Citrus Sinensis ID: 040770
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJH8 | 527 | High affinity nitrate tra | yes | no | 0.982 | 0.971 | 0.712 | 0.0 | |
| Q9LXH0 | 542 | High affinity nitrate tra | no | no | 0.990 | 0.952 | 0.720 | 0.0 | |
| Q9FJH7 | 539 | High affinity nitrate tra | no | no | 0.990 | 0.957 | 0.727 | 0.0 | |
| O82811 | 530 | High-affinity nitrate tra | no | no | 0.984 | 0.967 | 0.700 | 0.0 | |
| Q9LMZ9 | 522 | High-affinity nitrate tra | no | no | 0.955 | 0.954 | 0.669 | 0.0 | |
| Q9LPV5 | 502 | High affinity nitrate tra | no | no | 0.894 | 0.928 | 0.543 | 1e-154 | |
| Q9LYK2 | 493 | High affinity nitrate tra | no | no | 0.783 | 0.827 | 0.470 | 1e-111 | |
| P22152 | 507 | Nitrate transporter OS=Em | no | no | 0.401 | 0.412 | 0.341 | 3e-23 | |
| P08194 | 452 | Glycerol-3-phosphate tran | N/A | no | 0.309 | 0.356 | 0.262 | 0.0004 |
| >sp|Q9FJH8|NRT24_ARATH High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/533 (71%), Positives = 439/533 (82%), Gaps = 21/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA G GSSMHGV REQ++A V SP+VP+D++ KF LPVD+EH+AK FK+ SF P
Sbjct: 1 MADGFGEPGSSMHGVTGREQSYAFSVESPAVPSDSSAKFSLPVDTEHKAKVFKLLSFEAP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHLAW+SFFTCFISTFAAAPLVPIIRDNLNLT+ DVGNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLAWISFFTCFISTFAAAPLVPIIRDNLNLTRQDVGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VF MSFV A GYI RFMIGFCLATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVGGAGGYITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
G+I+GLVNG A GWG+MGGGVTQLLMP+V+E+I+ G+T FTAWR+AFF+PGW+H+IMGI
Sbjct: 181 GQIIGLVNGTAAGWGNMGGGVTQLLMPMVYEIIRRLGSTSFTAWRMAFFVPGWMHIIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGN L+KKG V KDKFSKV WY I NYRTWVF +LYG+SMG+ELTT+N
Sbjct: 241 LVLTLGQDLPDGNRSTLEKKGAVTKDKFSKVLWYAITNYRTWVFVLLYGYSMGVELTTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ +DRF+LKLHTAG IAA+FGMAN FARP GG+ASD+A R FGMRGRLWTLWI QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGIIAASFGMANFFARPIGGWASDIAARRFGMRGRLWTLWIIQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGG FC+WLGRA +LP AVV M+LFS+G QAACGATF I+PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGFFCLWLGRATTLPTAVVFMILFSLGAQAACGATFAIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS S FST G++ MG + WGSM LP ++D +S E
Sbjct: 421 FGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTEDEVKSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
EYYY EWTE EK +GMHEGSLKFA NS+SERG+RV ASAP+PP P H
Sbjct: 481 EYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRV----ASAPSPP---PEH 526
|
Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXH0|NRT26_ARATH High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/544 (72%), Positives = 450/544 (82%), Gaps = 28/544 (5%)
Query: 1 MAQN----EGSLGSSMHGVIAREQTFALEVVSPSVPT-------DTTVKFDLPVDSEHRA 49
MA N +GS+G+S+HGV AREQ F+ V VP+ D T KF LPVDSEHRA
Sbjct: 1 MAHNHSNEDGSIGTSLHGVTAREQVFSFSV-QEDVPSSQAVRTNDPTAKFALPVDSEHRA 59
Query: 50 KAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVS 109
K FK SFAKPHMR FHL W+SFFTCFISTFAAAPLVP+IRDNL+LTKTD+GNAGVASVS
Sbjct: 60 KVFKPLSFAKPHMRAFHLGWISFFTCFISTFAAAPLVPVIRDNLDLTKTDIGNAGVASVS 119
Query: 110 GSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFV 169
G+IFSRL MGAVCDL+G RYGT+F L+L+APAVF MSFV+DA Y+A RFMIGFCLATFV
Sbjct: 120 GAIFSRLAMGAVCDLLGARYGTAFSLMLTAPAVFSMSFVADAGSYLAVRFMIGFCLATFV 179
Query: 170 SCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229
SCQYWT++MF GKI+GLVNGCAGGWGDMGGGVTQLLMP+VF VIKL GATPFTAWR AFF
Sbjct: 180 SCQYWTSVMFTGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLTGATPFTAWRFAFF 239
Query: 230 IPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYG 289
IPG L ++MGILVLTLGQDLPDGNL LQK G V+KDKFSKVFW+ +KNYRTW+ F+LYG
Sbjct: 240 IPGILQIVMGILVLTLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFMLYG 299
Query: 290 FSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMR 349
FSMG+ELT NN+IS + YDRFNL LHTAG IAA+FGMAN FARPFGGYASDVA RLFGMR
Sbjct: 300 FSMGVELTINNVISGYFYDRFNLTLHTAGIIAASFGMANFFARPFGGYASDVAARLFGMR 359
Query: 350 GRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLG 409
GRLW LWI QT+G +FC+WLGRA SLPIA++AM+LFSMGTQAACGA FG+ PFVSRRSLG
Sbjct: 360 GRLWILWILQTVGALFCIWLGRASSLPIAILAMMLFSMGTQAACGALFGVAPFVSRRSLG 419
Query: 410 ILSGLTGAGGNFGSGLTQLAFFSNSKFSTATGISLMGALT--------------WGSMLL 455
++SGLTGAGGNFGSG+TQL FFS+S+FSTA G+SLMG + WGSM L
Sbjct: 420 LISGLTGAGGNFGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFL 479
Query: 456 PPSKDPQRSNEEYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTS 515
PS+D ++S EE+YY +EWTEEEK G+HEGS+KFAENS+SERG++ +A PTP T
Sbjct: 480 RPSQDGEKSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGRKA--MLADIPTPETG 537
Query: 516 TPVH 519
+P H
Sbjct: 538 SPAH 541
|
Involved in high-affinity nitrate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJH7|NRT23_ARATH High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana GN=NRT2.3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/535 (72%), Positives = 445/535 (83%), Gaps = 19/535 (3%)
Query: 2 AQNEGSLGSSMHGVIAREQTFALEVVSPSVPT---DTTVKFDLPVDSEHRAKAFKVFSFA 58
+ EGS+G+S+HGV AREQ F+ V + S D T KF LPVDSEHRAK F SFA
Sbjct: 6 SNEEGSIGTSLHGVTAREQVFSFSVDASSQTVQSDDPTAKFALPVDSEHRAKVFNPLSFA 65
Query: 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIM 118
KPHMR FHL W+SFFTCFISTFAAAPLVPIIRDNL+LTKTD+GNAGVASVSG+IFSRL M
Sbjct: 66 KPHMRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKTDIGNAGVASVSGAIFSRLAM 125
Query: 119 GAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIM 178
GAVCDL+G RYGT+F L+L+AP VF MSFV GY+ RFMIGFCLATFVSCQYWT++M
Sbjct: 126 GAVCDLLGARYGTAFSLMLTAPTVFSMSFVGGPSGYLGVRFMIGFCLATFVSCQYWTSVM 185
Query: 179 FNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIM 238
FNGKI+GLVNGCAGGWGDMGGGVTQLLMP+VF VIKLAGATPF AWRIAFF+PG+L V+M
Sbjct: 186 FNGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLAGATPFMAWRIAFFVPGFLQVVM 245
Query: 239 GILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTT 298
GILVL+LGQDLPDGNL LQK G V+KDKFSKVFW+ +KNYRTW+ FVLYG SMGIELT
Sbjct: 246 GILVLSLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFVLYGSSMGIELTI 305
Query: 299 NNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIF 358
NN+IS + YDRFNLKL TAG +AA+FGMAN ARPFGGYASDVA R+FGMRGRLWTLWIF
Sbjct: 306 NNVISGYFYDRFNLKLQTAGIVAASFGMANFIARPFGGYASDVAARVFGMRGRLWTLWIF 365
Query: 359 QTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAG 418
QT+G +FC+WLGRA SLPIA++AM+LFS+GTQAACGA FG+ PFVSRRSLG++SGLTGAG
Sbjct: 366 QTVGALFCIWLGRASSLPIAILAMMLFSIGTQAACGALFGVAPFVSRRSLGLISGLTGAG 425
Query: 419 GNFGSGLTQLAFFSNSKFSTATGISLMGALT--------------WGSMLLPPSKDPQRS 464
GNFGSGLTQL FFS+++FSTA G+SLMG + WGSM L PS D +RS
Sbjct: 426 GNFGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPSTDGERS 485
Query: 465 NEEYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
EEYYY SEWTE EK +G+HEGS+KFAENS+SERG++V +A+ PTP TP H
Sbjct: 486 QEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGRKV--ALANIPTPENGTPSH 538
|
Involved in high-affinity nitrate transport. Acts as a dual component transporter with NTR3.1. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82811|NRT21_ARATH High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/531 (70%), Positives = 432/531 (81%), Gaps = 18/531 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
M + G GSSMHGV REQ+FA V SP V TD T KFDLPVD+EH+A FK+FSFAKP
Sbjct: 1 MGDSTGEPGSSMHGVTGREQSFAFSVQSPIVHTDKTAKFDLPVDTEHKATVFKLFSFAKP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SF TCF+STFAAAPLVPIIR+NLNLTK D+GNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLSWISFSTCFVSTFAAAPLVPIIRENLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VF MSFVSDA G+I RFMIGFCLATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
+I+GLVNG A GWG+MGGG+TQLLMP+V+E+I+ G+T FTAWRIAFF+PGWLH+IMGI
Sbjct: 181 SQIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVL LGQDLPDGN L+K G V KDKF K+ WY + NYRTW+F +LYG+SMG+EL+T+N
Sbjct: 241 LVLNLGQDLPDGNRATLEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ +DRF+LKLHTAG IAA FGMAN FARP GGYASD A + FGMRGRLWTLWI QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGLIAACFGMANFFARPAGGYASDFAAKYFGMRGRLWTLWIIQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
GG+FCVWLGRA +L AVVAMVLFSMG QAACGATF IVPFVSRR+LGI+SGLTGAGGN
Sbjct: 361 AGGLFCVWLGRANTLVTAVVAMVLFSMGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS S F+T G++ MG + WGSM LPPS DP + E
Sbjct: 421 FGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPSTDPVKGTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTP 517
+YY SEW E+EK + MH+GSL+FAEN+KSE G+RV SA TPP +TP
Sbjct: 481 AHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGRRVR----SAATPPENTP 527
|
Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NTR3.1. Acts as a repressor of lateral root initiation under high sucrose/low nitrate conditions. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LMZ9|NRT22_ARATH High-affinity nitrate transporter 2.2 OS=Arabidopsis thaliana GN=NRT2.2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/514 (66%), Positives = 416/514 (80%), Gaps = 16/514 (3%)
Query: 9 GSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKPHMRTFHLA 68
GSSMHGV REQ++A V S PT+T K++LPVD+E +A FK+FSFAKPHMRTFHL+
Sbjct: 8 GSSMHGVTGREQSYAFSV-DGSEPTNTKKKYNLPVDAEDKATVFKLFSFAKPHMRTFHLS 66
Query: 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPR 128
W+SF TCF+STFAAAPL+PIIR+NLNLTK D+GNAGVASVSGSIFSRL+MGAVCDL+GPR
Sbjct: 67 WISFSTCFVSTFAAAPLIPIIRENLNLTKHDIGNAGVASVSGSIFSRLVMGAVCDLLGPR 126
Query: 129 YGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVN 188
YG +FL++LSAP VF MSFVSDA G+I RFMIGFCLATFVSCQYW + MFN +I+GLVN
Sbjct: 127 YGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNSQIIGLVN 186
Query: 189 GCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQD 248
G A GWG+MGGG+TQLLMP+V+E+I+ G+T FTAWRIAFF+PGWLH+IMGILVLTLGQD
Sbjct: 187 GTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGILVLTLGQD 246
Query: 249 LPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYD 308
LP GN A++K G V KDKF K+ WY + NYRTW+F +LYG+SMG+EL+T+N+I+E+ +D
Sbjct: 247 LPGGNRAAMEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFFD 306
Query: 309 RFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW 368
RF+LKLHTAG IAA FGMAN FARP GG+ASD+A + FGMRGRLWTLWI QT GG+FCVW
Sbjct: 307 RFHLKLHTAGIIAACFGMANFFARPAGGWASDIAAKRFGMRGRLWTLWIIQTSGGLFCVW 366
Query: 369 LGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQL 428
LGRA +L AVV+MVLFS+G QAACGATF IVPFVSRR+LGI+SGLTGAGGNFGSGLTQL
Sbjct: 367 LGRANTLVTAVVSMVLFSLGAQAACGATFAIVPFVSRRALGIISGLTGAGGNFGSGLTQL 426
Query: 429 AFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNEEYYYSSEW 474
FFS S+F+T G++ MG + WGSM PPS D + E+YY E+
Sbjct: 427 VFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSNDSVDAT-EHYYVGEY 485
Query: 475 TEEEKLRGMHEGSLKFAENSKSERGKRVNNNIAS 508
++EE+ GMH S FA+ +K+E G V+ A+
Sbjct: 486 SKEEQQIGMHLKSKLFADGAKTEGGSSVHKGNAT 519
|
Involved in high-affinity nitrate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPV5|NRT25_ARATH High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/482 (54%), Positives = 339/482 (70%), Gaps = 16/482 (3%)
Query: 38 KFDLPVDSEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTK 97
+F LPVD+E++A F++FS AKPHMR FHL+W FF CF+STFAA PL+P+IR+NLNLT
Sbjct: 20 RFALPVDAENKATTFRLFSVAKPHMRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTA 79
Query: 98 TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAA 157
TD+GNAG+ASVSG++F+R++MG CDL GPR ++ L L +APAV+ + + G+I
Sbjct: 80 TDIGNAGIASVSGAVFARIVMGTACDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMV 139
Query: 158 RFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217
RF GF LATFVS Q+W + MF+G ++G NG A GWG++GGG TQL+MP+VF +I+ G
Sbjct: 140 RFFAGFSLATFVSTQFWMSSMFSGPVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMG 199
Query: 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIK 277
AT FTAWRIAFFIPG + VL GQDLPDG+ A+ K G KD KV GIK
Sbjct: 200 ATKFTAWRIAFFIPGLFQTLSAFAVLLFGQDLPDGDYWAMHKSGEREKDDVGKVISNGIK 259
Query: 278 NYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGY 337
NYR W+ + YG+ G+ELT +NII+E+ +DRF+LKL TAG IAA+FG+AN FARP GG
Sbjct: 260 NYRGWITALAYGYCFGVELTIDNIIAEYFFDRFHLKLQTAGIIAASFGLANFFARPGGGI 319
Query: 338 ASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATF 397
SD R FGMRGRLW WI QT GGV C LG+ SL ++++ M++FS+ QAACG TF
Sbjct: 320 FSDFMSRRFGMRGRLWAWWIVQTSGGVLCACLGQISSLTVSIIVMLVFSVFVQAACGLTF 379
Query: 398 GIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAFFSNSKFSTATGISLMGALT-------- 449
G+VPF+SRRSLG++SG+TGAGGN G+ LTQL FF S ++ TGI+LMG ++
Sbjct: 380 GVVPFISRRSLGVVSGMTGAGGNVGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPIC 439
Query: 450 ------WGSMLLPPSKDPQRSNEEYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVN 503
WG M PS ++ EE YY +EW +EEK + +H GS KFAE S SERG+
Sbjct: 440 LIYFPQWGGMFCGPSS--KKVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGRATT 497
Query: 504 NN 505
+
Sbjct: 498 TH 499
|
Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYK2|NRT27_ARATH High affinity nitrate transporter 2.7 OS=Arabidopsis thaliana GN=NRT2.7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/436 (47%), Positives = 279/436 (63%), Gaps = 28/436 (6%)
Query: 33 TDTTVKFDLPVDSEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDN 92
+D+T+ PVDS+ RA F+ FS + PH R FHLAW+S F+CF STF+ PLVP+I +
Sbjct: 14 SDSTI----PVDSDGRATVFRPFSLSSPHSRAFHLAWLSLFSCFFSTFSIPPLVPVISSD 69
Query: 93 LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQ 152
LNL+ + V AG+AS +GSIFSRL MG +CDLIGPR ++ L L+AP + S VS
Sbjct: 70 LNLSASTVSAAGIASFAGSIFSRLAMGPLCDLIGPRTSSAILSFLTAPVILSASLVSSPT 129
Query: 153 GYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEV 212
+I RF +GF LA FV+ QYW + MF+G ++GL NG + GW ++G G++QLLMPL++
Sbjct: 130 SFILVRFFVGFSLANFVANQYWMSSMFSGNVIGLANGVSAGWANVGAGISQLLMPLIYST 189
Query: 213 IKLAGATP-FTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNK------ 265
I A P AWR++F P V +LVL GQD P GN +K N NK
Sbjct: 190 I--AEFLPRAVAWRVSFVFPAIFQVTTAVLVLLYGQDTPHGN----RKNSNQNKLTIPEE 243
Query: 266 -----------DKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKL 314
F ++ G+ NYR W+ +LYG+S G+ELTT+N+I+ + Y+RF + L
Sbjct: 244 EEVLVVEEDERSSFVEILIGGLGNYRAWILALLYGYSYGVELTTDNVIAGYFYERFGVNL 303
Query: 315 HTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES 374
AGTIAA+FG++NI +RP GG SD G+ FGMRGRLW LWI Q++ G+ CV LGR S
Sbjct: 304 EAAGTIAASFGISNIASRPAGGMISDALGKRFGMRGRLWGLWIVQSVAGLLCVLLGRVNS 363
Query: 375 LPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAFFSNS 434
L +++ M +FS+ QAA G FG+VPFVS RSLG+++G+TG+GG G+ +TQ FS
Sbjct: 364 LWGSILVMWVFSVFVQAASGLVFGVVPFVSTRSLGVVAGITGSGGTVGAVVTQFLLFSGD 423
Query: 435 KFSTATGISLMGALTW 450
ISLMG +T+
Sbjct: 424 DVRKQRSISLMGLMTF 439
|
Involved in high-affinity nitrate transport. Controls nitrate content in seeds. Arabidopsis thaliana (taxid: 3702) |
| >sp|P22152|CRNA_EMENI Nitrate transporter OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=crnA PE=2 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 2/211 (0%)
Query: 45 SEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNA 103
+ +A V + + R F +W F F+S +A PL+ + IRD+L++++T + N+
Sbjct: 16 NNRKALTIPVLNPFNTYGRVFFFSWFGFMLAFLSWYAFPPLLTVTIRDDLDMSQTQIANS 75
Query: 104 GVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGF 163
+ ++ ++ RLI G +CD GPR LLL+ + V+ QG IA RF IG
Sbjct: 76 NIIALLATLLVRLICGPLCDRFGPRLVFIGLLLVGSIPTAMAGLVTSPQGLIALRFFIGI 135
Query: 164 CLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE-VIKLAGATPFT 222
TFV CQ W T F+ I+G N A G G+ GGG+T +MP +F+ +I+ G
Sbjct: 136 LGGTFVPCQVWCTGFFDKSIVGTANSLAAGLGNAGGGITYFVMPAIFDSLIRDQGLPAHK 195
Query: 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDGN 253
AWR+A+ +P L V + +L D P G
Sbjct: 196 AWRVAYIVPFILIVAAALGMLFTCDDTPTGK 226
|
Permease for nitrate uptake. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|P08194|GLPT_ECOLI Glycerol-3-phosphate transporter OS=Escherichia coli (strain K12) GN=glpT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 96 TKTDVGNA--GVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQG 153
++ D+G A G++ G FS+ IMG+V D PR L+L+A + M FV A
Sbjct: 61 SRGDLGFALSGISIAYG--FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 118
Query: 154 YIAARFMIGFCLATFV---------SCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQL 204
IA F++ F F + +W + G I+ + N CA ++GGG+
Sbjct: 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN-CA---HNVGGGIP-- 172
Query: 205 LMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDG-NLGALQKKGNV 263
PL+F L G F W A ++P + +++ + + +D P L +++ N
Sbjct: 173 --PLLF----LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 226
Query: 264 NKDKFSK 270
D +++
Sbjct: 227 YPDDYNE 233
|
Responsible for glycerol-3-phosphate uptake. Escherichia coli (strain K12) (taxid: 83333) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| 351721519 | 530 | NRT2 protein [Glycine max] gi|3005576|gb | 0.988 | 0.971 | 0.765 | 0.0 | |
| 356543492 | 530 | PREDICTED: high affinity nitrate transpo | 0.988 | 0.971 | 0.759 | 0.0 | |
| 225436528 | 530 | PREDICTED: high affinity nitrate transpo | 0.988 | 0.971 | 0.765 | 0.0 | |
| 38636547 | 530 | high-affinity nitrate transporter [Prunu | 0.988 | 0.971 | 0.754 | 0.0 | |
| 39573544 | 530 | high-affinity nitrate transporter [Prunu | 0.988 | 0.971 | 0.752 | 0.0 | |
| 356541463 | 530 | PREDICTED: high affinity nitrate transpo | 0.963 | 0.947 | 0.771 | 0.0 | |
| 255565393 | 530 | nitrate transporter, putative [Ricinus c | 0.984 | 0.967 | 0.749 | 0.0 | |
| 357452997 | 526 | High-affinity nitrate transporter [Medic | 0.982 | 0.973 | 0.754 | 0.0 | |
| 255565397 | 530 | nitrate transporter, putative [Ricinus c | 0.990 | 0.973 | 0.783 | 0.0 | |
| 255565395 | 530 | nitrate transporter, putative [Ricinus c | 0.988 | 0.971 | 0.742 | 0.0 |
| >gi|351721519|ref|NP_001236444.1| NRT2 protein [Glycine max] gi|3005576|gb|AAC09320.1| putative high affinity nitrate transporter [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/533 (76%), Positives = 461/533 (86%), Gaps = 18/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA+ EGS GSSMHGV REQTF V SP VPTDTT KF LPVDSEH+AK FK+FS A P
Sbjct: 1 MAEIEGSPGSSMHGVTGREQTFVASVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SFFTCF+STFAAAPLVPIIRDNLNLTK+D+GNAGVASVSGSIFSRL MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLAMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCD++GPRYG +FL++LSAP VFCMSFV DA GYIA RF+IGF LATFVSCQYW + MFN
Sbjct: 121 VCDMLGPRYGCAFLIMLSAPTVFCMSFVKDAAGYIAVRFLIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
KI+GL NG A GWG+MGGG TQL+MPLV+E+I+ AGATPFTAWRIAFF+PG++HVIMGI
Sbjct: 181 SKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFVPGFMHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGNLGAL+KKG+V KDKFSKV WY I NYRTW+F +LYG+SMG+ELTT+N
Sbjct: 241 LVLTLGQDLPDGNLGALRKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKLHTAG IAA+FGMAN+ ARPFGGYASDVA RLFGMRGRLWTLWI QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGGVFC+WLGRA SLPIAV+AM+LFS+G QAACGATFGI+PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS SKFSTATG+SLMG + WGSM LPPSKD +S E
Sbjct: 421 FGSGLTQLVFFSTSKFSTATGLSLMGVMIVACTLPVSVVHFPQWGSMFLPPSKDVSKSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
E+YY+SEW EEEK +G+H+ SLKFAENS+SERGKRV ASAPTPP +TP H
Sbjct: 481 EFYYTSEWNEEEKQKGLHQQSLKFAENSRSERGKRV----ASAPTPPNATPTH 529
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543492|ref|XP_003540194.1| PREDICTED: high affinity nitrate transporter 2.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/533 (75%), Positives = 459/533 (86%), Gaps = 18/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA+ EGS GSSMHGV REQTF + SP VPTDTT KF LPVDSEH+AK FK+FS A P
Sbjct: 1 MAEIEGSPGSSMHGVTGREQTFVASIASPIVPTDTTAKFALPVDSEHKAKIFKLFSMANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SFFTCF+STFAAAPLVPIIRDNLNLTK+D+GNAGVASVSGSIFSRL MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLAMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VFCMSFV DA GYI RF+IGF LATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVKDAAGYIMVRFLIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
KI+GL NG A GWG+MGGG TQL+MPLV+E+I+ AGATPFTAWRIAFF+PG++HVIMGI
Sbjct: 181 SKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFVPGFMHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGNL ALQKKG+V KDKFSKV WY I NYRTW+F +LYG+SMG+ELTT+N
Sbjct: 241 LVLTLGQDLPDGNLAALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKLHTAG IAA+FGMAN+ ARPFGGYASDVA RLFGMRGRLWTLWI QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGGVFC+WLGRA SLPIA++AM+LFS+G QAACGATFGI+PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAILAMILFSLGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS SKFSTATG+SLMG + WGSM LPPSKD +S E
Sbjct: 421 FGSGLTQLVFFSTSKFSTATGLSLMGVMIVACTLPVSVVHFPQWGSMFLPPSKDVNKSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
E+YY+SEW EEE+ +G+H+ SLKFAENS+SERGKRV ASAPTPP +TP H
Sbjct: 481 EFYYTSEWNEEERQKGLHQQSLKFAENSRSERGKRV----ASAPTPPNATPTH 529
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436528|ref|XP_002277127.1| PREDICTED: high affinity nitrate transporter 2.4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/533 (76%), Positives = 459/533 (86%), Gaps = 18/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
M+ EGS GSSMHGV REQTFA V SP VPTDT+ F LPVDSEH+AK FK+ SFA P
Sbjct: 1 MSNIEGSPGSSMHGVTGREQTFAFSVASPIVPTDTSANFALPVDSEHKAKVFKILSFANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SFFTCF+STFAAAPLVPIIRDNLNLTK DVGNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKGDVGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VFCMSFVS A GYIA RFMIGF LATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
GKI+GLVNG A GWG+MGGG TQL+MP+++EVI G+TPFTAWRIAFFIPGWLHVIMGI
Sbjct: 181 GKIIGLVNGTAAGWGNMGGGATQLIMPILYEVICRVGSTPFTAWRIAFFIPGWLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGNL LQKKG+V++DKFS+VFWY I NYRTW+F +LYG+SMG+EL+ +N
Sbjct: 241 LVLTLGQDLPDGNLSTLQKKGDVSRDKFSRVFWYAITNYRTWIFVLLYGYSMGVELSIDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKLHTAG IAATFGMAN+ ARPFGGY+SD+AGR FGMRGRLWTLWI QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAATFGMANLVARPFGGYSSDLAGRRFGMRGRLWTLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGGVFC+WLGRA SL IAV+AM+LFS+G QAACGATFGIVPF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLSIAVLAMMLFSVGAQAACGATFGIVPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS+SKFSTATG+SLMGA+ WGSM LPPSKD + E
Sbjct: 421 FGSGLTQLVFFSSSKFSTATGLSLMGAMIVACTLPVTLVHFPQWGSMFLPPSKDVVKGTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
E+YY SEW EEEK +GMH+GSLKFAENS+SERG+RV ASAPTPP STP H
Sbjct: 481 EHYYESEWNEEEKQKGMHQGSLKFAENSRSERGQRV----ASAPTPPNSTPSH 529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38636547|dbj|BAD02939.1| high-affinity nitrate transporter [Prunus persica] gi|48675347|dbj|BAD22821.1| nitrate transporter [Prunus persica] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/533 (75%), Positives = 456/533 (85%), Gaps = 18/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA+ EG GSSMHGV REQTFA V SP VPTD T KFDLPVDSEH+AK FK+FS A P
Sbjct: 1 MAEVEGEPGSSMHGVTGREQTFAFSVASPIVPTDPTAKFDLPVDSEHKAKVFKIFSLANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SFFTCF+STFAAAPLVPIIRDNLNLTK D+GNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VFCMSFVSDA GY+A RFMIGF LATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAGGYLAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
KI+GLVNG A GWG+MGGG TQLLMPLVF++I GATPFTAWRIAFFIPGWLHVIMGI
Sbjct: 181 SKIIGLVNGTAAGWGNMGGGATQLLMPLVFDIIGRVGATPFTAWRIAFFIPGWLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
+VLTLGQDLPDGNL ALQKKG+V KD+FSKV W+ + NYRTW+F +LYG+SMG+EL+T+N
Sbjct: 241 MVLTLGQDLPDGNLAALQKKGDVAKDQFSKVLWHAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKLHTAG IAATFGMAN+ ARPFGG+ASD A R FGMRGRLWTLWI QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAATFGMANLVARPFGGFASDRAARYFGMRGRLWTLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGGVFC+WLGRA SLPIAV AM+LFS+G QAACGATFG++PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVFAMILFSVGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS+S FSTATG+SLMG + WGSM LPPSKD +S E
Sbjct: 421 FGSGLTQLVFFSSSAFSTATGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVVKSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
E+YY +EW EEEK +G+H+ SL+FAENS+SERG+RV ASAPTPP +TP H
Sbjct: 481 EFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRV----ASAPTPPNTTPSH 529
|
Source: Prunus persica Species: Prunus persica Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39573544|dbj|BAD04063.1| high-affinity nitrate transporter [Prunus persica] gi|48675349|dbj|BAD22822.1| nitrate transporter [Prunus persica] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/533 (75%), Positives = 454/533 (85%), Gaps = 18/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA+ EG GSSMHGV REQTFA V SP VPTD T KFDLPVDSEH+AK FK+FS A P
Sbjct: 1 MAEVEGEPGSSMHGVTGREQTFAFSVASPIVPTDPTAKFDLPVDSEHKAKVFKIFSLANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SFFTCF+STFAAAPLVPIIRDNLNLTK D+GNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VFCMSFVSDA GY+A RFMIGF LATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAGGYLAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
KI+GLVNG A GWG+MGGG TQLLMPLVF++I GATPFTAWRIAFFIPGWLHVIMGI
Sbjct: 181 SKIIGLVNGTAAGWGNMGGGATQLLMPLVFDIIGRVGATPFTAWRIAFFIPGWLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
+VLTLGQDLPDGNL ALQKKG+V KD+FSKV W+ I NYRTW+F +LYG+SMG+EL+ +N
Sbjct: 241 MVLTLGQDLPDGNLAALQKKGDVAKDQFSKVLWHAITNYRTWIFVLLYGYSMGVELSIDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKLHTAG IAA FGMANI ARPFGG+ASD A R FGMRGRLWTLWI QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAAAFGMANIVARPFGGFASDRAARYFGMRGRLWTLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGGVFC+WLGRA SLPIAV AM+LFS+G QAACGATFG++PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVFAMILFSVGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS++ FSTATG+SLMG + WGSM LPPSKD +S E
Sbjct: 421 FGSGLTQLVFFSSAAFSTATGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVVKSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
E+YY +EW EEEK +G+H+ SL+FAENS+SERG+RV ASAPTPP +TP H
Sbjct: 481 EFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRV----ASAPTPPNTTPSH 529
|
Source: Prunus persica Species: Prunus persica Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541463|ref|XP_003539195.1| PREDICTED: high affinity nitrate transporter 2.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/516 (77%), Positives = 447/516 (86%), Gaps = 14/516 (2%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA EGS GSSMHGV REQTF V SP VPTDTT F LPVDSEH+AK FK+FS A P
Sbjct: 1 MADIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKIFKLFSLANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SFFTCF+STFAAAPLVPIIRDNLNLTK D+GNAGVASVSGSIFSRL MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKGDIGNAGVASVSGSIFSRLTMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VFCMSFV+DA GYIA RFMIGF LATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
KI+GLVNG A GWG+MGGG TQL+MP+V+E+I+ AGATPFTAWRIAFF+PGW+HV+MGI
Sbjct: 181 SKIIGLVNGTAAGWGNMGGGATQLIMPMVYELIRRAGATPFTAWRIAFFVPGWMHVVMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGNLGALQKKGNV KDKFSKV WY I NYRTWVF +LYG+SMG+ELTT+N
Sbjct: 241 LVLTLGQDLPDGNLGALQKKGNVAKDKFSKVLWYAITNYRTWVFALLYGYSMGVELTTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKLHTAG IAA+FGMAN+ ARPFGGY SDVA RLFGMRGRLW LWI QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWNLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGGVFC+WLGRA SLPIAV+AM+LFS+G QAACGATFGI+PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS S+FST+TG+SLMG + WGSM LPPSKD +S E
Sbjct: 421 FGSGLTQLIFFSTSRFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVNKSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRV 502
EYYY++EW EEEK +G+H+ SLKFAENS+SERGKRV
Sbjct: 481 EYYYTAEWNEEEKQKGLHQNSLKFAENSRSERGKRV 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565393|ref|XP_002523687.1| nitrate transporter, putative [Ricinus communis] gi|223536991|gb|EEF38627.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/531 (74%), Positives = 452/531 (85%), Gaps = 18/531 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
M EGS GSSMHGV REQTFA V SP VPTDTT KFDLPVDSEH+AK FK+FSFA P
Sbjct: 1 MGDIEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFDLPVDSEHKAKVFKLFSFANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SF TCF+STFAAAPLVPIIRDNLNL K+D+GNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLSWISFCTCFVSTFAAAPLVPIIRDNLNLVKSDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
+CDL+GPRYG +FL++LSAP VFCMSFVS A GYIA RFMIGF LATFVSCQYW + MFN
Sbjct: 121 ICDLLGPRYGCAFLIMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
GKI+GLVNG A GWG+MGGG TQL+MPLV+++I+ GATPFTAWRIAFF+PG LHVIMGI
Sbjct: 181 GKIIGLVNGTAAGWGNMGGGATQLIMPLVYDLIQRVGATPFTAWRIAFFVPGLLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGNLGALQKKG+V KDKFSKV WY I NYRTW+F +LYG+SMG+EL+T+N
Sbjct: 241 LVLTLGQDLPDGNLGALQKKGDVAKDKFSKVMWYAITNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKL TAG IAATFGMAN+ ARPFGG+ASD A R FGMRGRLW LWI QT
Sbjct: 301 VIAEYFYDRFNLKLQTAGIIAATFGMANLVARPFGGFASDYAARYFGMRGRLWVLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGG FC+WLGRA SLPIAV+AM+LFS+G QAACGATFG++PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGAFCIWLGRANSLPIAVLAMILFSVGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS ++FST TG+SLMG + WG M LPPSKD +S E
Sbjct: 421 FGSGLTQLIFFSTTRFSTETGLSLMGVMIVACTLPVTLVYFPQWGGMFLPPSKDAMKSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTP 517
E+YY+SEW EEEK +G+H+ SLKFAENS+SERG R IASAPTPP +TP
Sbjct: 481 EFYYASEWNEEEKQKGLHQQSLKFAENSRSERGNR----IASAPTPPNTTP 527
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357452997|ref|XP_003596775.1| High-affinity nitrate transporter [Medicago truncatula] gi|358346959|ref|XP_003637531.1| High-affinity nitrate transporter [Medicago truncatula] gi|355485823|gb|AES67026.1| High-affinity nitrate transporter [Medicago truncatula] gi|355503466|gb|AES84669.1| High-affinity nitrate transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/533 (75%), Positives = 457/533 (85%), Gaps = 21/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA EGS GSSMHGV REQTF V SP VPTDTT KF LPVDSEH++K FK+FS A P
Sbjct: 1 MADIEGSPGSSMHGVTGREQTFMSSVASPMVPTDTTAKFALPVDSEHKSKVFKLFSMANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SFFTCF+STFAAAPLVPIIRDNLNLTK+DVGNAGVASVSGSIFSRL MGA
Sbjct: 61 HMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDVGNAGVASVSGSIFSRLAMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
+CDL+GPRYG +FL++L+AP VFCMSFV +A GYIA RFMIGF LATFVSCQYW + MFN
Sbjct: 121 ICDLLGPRYGCAFLIMLTAPTVFCMSFVENAAGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
KI+GL NG A GWG+MGGG TQL+MPLV+E+I+ AGATPFTAWRIAFFIPGWLHVIMGI
Sbjct: 181 SKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFIPGWLHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
+VLTLGQDLPDGNLGALQKKGNV KDKF+KV WY I NYRTW+F +LYG+SMG+ELTT+N
Sbjct: 241 MVLTLGQDLPDGNLGALQKKGNVAKDKFTKVLWYAITNYRTWIFALLYGYSMGVELTTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ YDRFNLKLHTAG IAA+FGMANI ARPFGGYASDVA RLFGMRGRLWTLWI QT
Sbjct: 301 VIAEYFYDRFNLKLHTAGIIAASFGMANIVARPFGGYASDVAARLFGMRGRLWTLWILQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGGVFC+WLGRA +LPIAV++M+LFS+G QAACGATFGI+PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGVFCIWLGRANTLPIAVLSMILFSVGAQAACGATFGIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS+SKFSTA+G+S MGA+ WGSM LP SK+ NE
Sbjct: 421 FGSGLTQLIFFSSSKFSTASGLSWMGAMIVGCTLPVAFVHFPQWGSMFLPASKE---INE 477
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
E+YY+SEW E+E +G+H+ SL+FAENS+SERGKRV ASA TPP +TP H
Sbjct: 478 EHYYTSEWNEDEVQKGLHQPSLRFAENSRSERGKRV----ASAATPPNTTPTH 526
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565397|ref|XP_002523689.1| nitrate transporter, putative [Ricinus communis] gi|223536993|gb|EEF38629.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/535 (78%), Positives = 461/535 (86%), Gaps = 19/535 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MAQ +G+LG+SMHGV REQTFA V S DTT KF+LPVDSEHRAK FK FS A P
Sbjct: 1 MAQ-DGALGTSMHGVTGREQTFAFSV--QSTENDTTHKFELPVDSEHRAKVFKPFSLANP 57
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMR FHLAW SFFT FISTFAAAPLVPIIRDNLNLTK+DVGNAGVASVSGSI SRL+MGA
Sbjct: 58 HMRAFHLAWTSFFTSFISTFAAAPLVPIIRDNLNLTKSDVGNAGVASVSGSILSRLVMGA 117
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDLIGPRYGT+FLL+LSAP VFCMSFVSDAQGY+ RFMIGFCLATFVSCQYWTT+MFN
Sbjct: 118 VCDLIGPRYGTAFLLMLSAPTVFCMSFVSDAQGYLIVRFMIGFCLATFVSCQYWTTMMFN 177
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
GKI+GLVNGCAGGWGDMGGGVTQLLMPLVF +IKLAGATPFTAWRIAFF+PG HVI+GI
Sbjct: 178 GKIIGLVNGCAGGWGDMGGGVTQLLMPLVFHIIKLAGATPFTAWRIAFFVPGCFHVIIGI 237
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGNL LQKKG+V KDKFSKV Y I NYRTW+FF+LYGFSMGI+LTTNN
Sbjct: 238 LVLTLGQDLPDGNLSTLQKKGDVAKDKFSKVLKYAITNYRTWIFFLLYGFSMGIQLTTNN 297
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
II+E+ YDRFNLKLHTAG IAA+FGM NIFARPFGGYASD+ R FG RGRLWTLWI QT
Sbjct: 298 IITEYFYDRFNLKLHTAGVIAASFGMTNIFARPFGGYASDLTARRFGTRGRLWTLWILQT 357
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LG VFC+WLGRA SLPIA++AM+L SMG QAACGAT+GIVPFVSRRSLGILSGLTGAGGN
Sbjct: 358 LGAVFCIWLGRANSLPIAILAMILSSMGIQAACGATYGIVPFVSRRSLGILSGLTGAGGN 417
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGALT--------------WGSMLLPPSKDPQRSNE 466
FGSGL QL FFS+S+FSTATG+SLMG L WGSM LPPSKDP + +E
Sbjct: 418 FGSGLNQLVFFSSSRFSTATGLSLMGILALVCTLSVALIHFPQWGSMFLPPSKDPAKCSE 477
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVHAV 521
EYYY++EWTEEE +GMHEGS+KFAENS+SERG+R N +ASA TPP +TP++ V
Sbjct: 478 EYYYTAEWTEEEMQKGMHEGSVKFAENSRSERGRR--NALASAATPPNATPLNNV 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565395|ref|XP_002523688.1| nitrate transporter, putative [Ricinus communis] gi|223536992|gb|EEF38628.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/533 (74%), Positives = 448/533 (84%), Gaps = 18/533 (3%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEVVSPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKP 60
MA EGS GSSMHGV REQTFAL V SP VPTDTT FDLPVDSEH+AK FK+FS A P
Sbjct: 1 MANIEGSPGSSMHGVTGREQTFALSVASPMVPTDTTAHFDLPVDSEHKAKVFKLFSIANP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SF TCFISTFAAAPLVPIIRDNLNL K+D+GNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLSWISFCTCFISTFAAAPLVPIIRDNLNLVKSDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VFCMS VS A GYIA RFMIGF LATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLIMLSAPTVFCMSLVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
GKI+GLVNG A GWG+MGGG TQL+MPLV+++I+ GATPFTAWRIAFF+PG LHVIMGI
Sbjct: 181 GKIIGLVNGTAAGWGNMGGGATQLIMPLVYDLIQRVGATPFTAWRIAFFVPGILHVIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGNLGALQKKG+V +DKFSKV WY I NYRTW+F +LYG+SMG+ELTT+N
Sbjct: 241 LVLTLGQDLPDGNLGALQKKGDVARDKFSKVMWYAITNYRTWIFVLLYGYSMGVELTTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ +DRFNLKLHTAG IAATFGMAN+ ARPFGGYASDVA R FGMRGRLW LW QT
Sbjct: 301 VIAEYFFDRFNLKLHTAGIIAATFGMANLVARPFGGYASDVAARHFGMRGRLWVLWTLQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGG FC+WLGRA SLP+A+ M+ FS+G QAACGATFG++PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGAFCIWLGRANSLPLAIFTMIAFSIGAQAACGATFGVIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGAL--------------TWGSMLLPPSKDPQRSNE 466
FGSGLTQL FFS +KFST G+SLMG + WG M P SKD RS E
Sbjct: 421 FGSGLTQLIFFSTTKFSTQAGLSLMGVMIVACTLPVTLIYFPQWGGMFFPASKDVTRSTE 480
Query: 467 EYYYSSEWTEEEKLRGMHEGSLKFAENSKSERGKRVNNNIASAPTPPTSTPVH 519
E+YY +EW EEEK +GMH+GSLKFAENS+SERG++V ASAPTPP +TP H
Sbjct: 481 EHYYEAEWNEEEKQKGMHQGSLKFAENSRSERGRKV----ASAPTPPYNTPSH 529
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| TAIR|locus:2075909 | 542 | NRT2.6 "high affinity nitrate | 0.959 | 0.922 | 0.680 | 1.1e-192 | |
| TAIR|locus:2159290 | 539 | NRT2.3 "AT5G60780" [Arabidopsi | 0.961 | 0.929 | 0.683 | 1.1e-192 | |
| TAIR|locus:2159280 | 527 | NRT2.4 "nitrate transporter 2. | 0.963 | 0.952 | 0.670 | 2e-189 | |
| TAIR|locus:2205190 | 530 | NRT2:1 "AT1G08090" [Arabidopsi | 0.967 | 0.950 | 0.658 | 6.2e-188 | |
| TAIR|locus:2205195 | 522 | NRT2.2 "nitrate transporter 2. | 0.946 | 0.944 | 0.634 | 1.1e-176 | |
| TAIR|locus:2010391 | 502 | NRT2.5 "nitrate transporter2.5 | 0.884 | 0.918 | 0.515 | 2.2e-130 | |
| TAIR|locus:2222652 | 493 | NRT2.7 "high affinity nitrate | 0.783 | 0.827 | 0.462 | 9.1e-100 | |
| ASPGD|ASPL0000060467 | 497 | nrtB [Emericella nidulans (tax | 0.406 | 0.426 | 0.299 | 1.5e-38 | |
| ASPGD|ASPL0000056693 | 507 | crnA [Emericella nidulans (tax | 0.399 | 0.410 | 0.314 | 1.2e-37 | |
| UNIPROTKB|Q47UD4 | 493 | narK "Nitrate permease" [Colwe | 0.357 | 0.377 | 0.302 | 1.2e-27 |
| TAIR|locus:2075909 NRT2.6 "high affinity nitrate transporter 2.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
Identities = 354/520 (68%), Positives = 408/520 (78%)
Query: 2 AQNEGSLGSSMHGVIAREQTFALE------XXXXXXXXXXXXKFDLPVDSEHRAKAFKVF 55
+ +GS+G+S+HGV AREQ F+ KF LPVDSEHRAK FK
Sbjct: 6 SNEDGSIGTSLHGVTAREQVFSFSVQEDVPSSQAVRTNDPTAKFALPVDSEHRAKVFKPL 65
Query: 56 SFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSR 115
SFAKPHMR FHL W+SFFTCFISTFAAAPLVP+IRDNL+LTKTD+GNAGVASVSG+IFSR
Sbjct: 66 SFAKPHMRAFHLGWISFFTCFISTFAAAPLVPVIRDNLDLTKTDIGNAGVASVSGAIFSR 125
Query: 116 LIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWT 175
L MGAVCDL+G RYGT+F L+L+APAVF MSFV+DA Y+A RFMIGFCLATFVSCQYWT
Sbjct: 126 LAMGAVCDLLGARYGTAFSLMLTAPAVFSMSFVADAGSYLAVRFMIGFCLATFVSCQYWT 185
Query: 176 TIMFNGKILGLVNXXXXXXXXXXXXVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLH 235
++MF GKI+GLVN VTQLLMP+VF VIKL GATPFTAWR AFFIPG L
Sbjct: 186 SVMFTGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLTGATPFTAWRFAFFIPGILQ 245
Query: 236 VIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIE 295
++MGILVLTLGQDLPDGNL LQK G V+KDKFSKVFW+ +KNYRTW+ F+LYGFSMG+E
Sbjct: 246 IVMGILVLTLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFMLYGFSMGVE 305
Query: 296 LTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTL 355
LT NN+IS + YDRFNL LHTAG IAA+FGMAN FARPFGGYASDVA RLFGMRGRLW L
Sbjct: 306 LTINNVISGYFYDRFNLTLHTAGIIAASFGMANFFARPFGGYASDVAARLFGMRGRLWIL 365
Query: 356 WIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLT 415
WI QT+G +FC+WLGRA SLPIA++AM+LFSMGTQAACGA FG+ PFVSRRSLG++SGLT
Sbjct: 366 WILQTVGALFCIWLGRASSLPIAILAMMLFSMGTQAACGALFGVAPFVSRRSLGLISGLT 425
Query: 416 GAGGNFGSGLTQLAFFSNSKFSTATGISLMGALT--------------WGSMLLPPSKDP 461
GAGGNFGSG+TQL FFS+S+FSTA G+SLMG + WGSM L PS+D
Sbjct: 426 GAGGNFGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFLRPSQDG 485
Query: 462 QRXXXXXXXXXXXXXXXKLRGMHEGSLKFAENSKSERGKR 501
++ K G+HEGS+KFAENS+SERG++
Sbjct: 486 EKSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGRK 525
|
|
| TAIR|locus:2159290 NRT2.3 "AT5G60780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
Identities = 354/518 (68%), Positives = 407/518 (78%)
Query: 2 AQNEGSLGSSMHGVIAREQTFALEXXXXXXXXXX---XXKFDLPVDSEHRAKAFKVFSFA 58
+ EGS+G+S+HGV AREQ F+ KF LPVDSEHRAK F SFA
Sbjct: 6 SNEEGSIGTSLHGVTAREQVFSFSVDASSQTVQSDDPTAKFALPVDSEHRAKVFNPLSFA 65
Query: 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIM 118
KPHMR FHL W+SFFTCFISTFAAAPLVPIIRDNL+LTKTD+GNAGVASVSG+IFSRL M
Sbjct: 66 KPHMRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKTDIGNAGVASVSGAIFSRLAM 125
Query: 119 GAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIM 178
GAVCDL+G RYGT+F L+L+AP VF MSFV GY+ RFMIGFCLATFVSCQYWT++M
Sbjct: 126 GAVCDLLGARYGTAFSLMLTAPTVFSMSFVGGPSGYLGVRFMIGFCLATFVSCQYWTSVM 185
Query: 179 FNGKILGLVNXXXXXXXXXXXXVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIM 238
FNGKI+GLVN VTQLLMP+VF VIKLAGATPF AWRIAFF+PG+L V+M
Sbjct: 186 FNGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLAGATPFMAWRIAFFVPGFLQVVM 245
Query: 239 GILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTT 298
GILVL+LGQDLPDGNL LQK G V+KDKFSKVFW+ +KNYRTW+ FVLYG SMGIELT
Sbjct: 246 GILVLSLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFVLYGSSMGIELTI 305
Query: 299 NNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIF 358
NN+IS + YDRFNLKL TAG +AA+FGMAN ARPFGGYASDVA R+FGMRGRLWTLWIF
Sbjct: 306 NNVISGYFYDRFNLKLQTAGIVAASFGMANFIARPFGGYASDVAARVFGMRGRLWTLWIF 365
Query: 359 QTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAG 418
QT+G +FC+WLGRA SLPIA++AM+LFS+GTQAACGA FG+ PFVSRRSLG++SGLTGAG
Sbjct: 366 QTVGALFCIWLGRASSLPIAILAMMLFSIGTQAACGALFGVAPFVSRRSLGLISGLTGAG 425
Query: 419 GNFGSGLTQLAFFSNSKFSTATGISLMGALT--------------WGSMLLPPSKDPQRX 464
GNFGSGLTQL FFS+++FSTA G+SLMG + WGSM L PS D +R
Sbjct: 426 GNFGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPSTDGERS 485
Query: 465 XXXXXXXXXXXXXXKLRGMHEGSLKFAENSKSERGKRV 502
K +G+HEGS+KFAENS+SERG++V
Sbjct: 486 QEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGRKV 523
|
|
| TAIR|locus:2159280 NRT2.4 "nitrate transporter 2.4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1836 (651.4 bits), Expect = 2.0e-189, P = 2.0e-189
Identities = 346/516 (67%), Positives = 399/516 (77%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEXXXXXXXXXXXXKFDLPVDSEHRAKAFKVFSFAKP 60
MA G GSSMHGV REQ++A KF LPVD+EH+AK FK+ SF P
Sbjct: 1 MADGFGEPGSSMHGVTGREQSYAFSVESPAVPSDSSAKFSLPVDTEHKAKVFKLLSFEAP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHLAW+SFFTCFISTFAAAPLVPIIRDNLNLT+ DVGNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLAWISFFTCFISTFAAAPLVPIIRDNLNLTRQDVGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VF MSFV A GYI RFMIGFCLATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVGGAGGYITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNXXXXXXXXXXXXVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
G+I+GLVN VTQLLMP+V+E+I+ G+T FTAWR+AFF+PGW+H+IMGI
Sbjct: 181 GQIIGLVNGTAAGWGNMGGGVTQLLMPMVYEIIRRLGSTSFTAWRMAFFVPGWMHIIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVLTLGQDLPDGN L+KKG V KDKFSKV WY I NYRTWVF +LYG+SMG+ELTT+N
Sbjct: 241 LVLTLGQDLPDGNRSTLEKKGAVTKDKFSKVLWYAITNYRTWVFVLLYGYSMGVELTTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ +DRF+LKLHTAG IAA+FGMAN FARP GG+ASD+A R FGMRGRLWTLWI QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGIIAASFGMANFFARPIGGWASDIAARRFGMRGRLWTLWIIQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
LGG FC+WLGRA +LP AVV M+LFS+G QAACGATF I+PF+SRRSLGI+SGLTGAGGN
Sbjct: 361 LGGFFCLWLGRATTLPTAVVFMILFSLGAQAACGATFAIIPFISRRSLGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGALT--------------WGSMLLPPSKDPQRXXX 466
FGSGLTQL FFS S FST G++ MG + WGSM LP ++D +
Sbjct: 421 FGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTEDEVKSTE 480
Query: 467 XXXXXXXXXXXXKLRGMHEGSLKFAENSKSERGKRV 502
K +GMHEGSLKFA NS+SERG+RV
Sbjct: 481 EYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRV 516
|
|
| TAIR|locus:2205190 NRT2:1 "AT1G08090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1822 (646.4 bits), Expect = 6.2e-188, P = 6.2e-188
Identities = 341/518 (65%), Positives = 398/518 (76%)
Query: 1 MAQNEGSLGSSMHGVIAREQTFALEXXXXXXXXXXXXKFDLPVDSEHRAKAFKVFSFAKP 60
M + G GSSMHGV REQ+FA KFDLPVD+EH+A FK+FSFAKP
Sbjct: 1 MGDSTGEPGSSMHGVTGREQSFAFSVQSPIVHTDKTAKFDLPVDTEHKATVFKLFSFAKP 60
Query: 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGA 120
HMRTFHL+W+SF TCF+STFAAAPLVPIIR+NLNLTK D+GNAGVASVSGSIFSRL+MGA
Sbjct: 61 HMRTFHLSWISFSTCFVSTFAAAPLVPIIRENLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 VCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
VCDL+GPRYG +FL++LSAP VF MSFVSDA G+I RFMIGFCLATFVSCQYW + MFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 GKILGLVNXXXXXXXXXXXXVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240
+I+GLVN +TQLLMP+V+E+I+ G+T FTAWRIAFF+PGWLH+IMGI
Sbjct: 181 SQIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGI 240
Query: 241 LVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300
LVL LGQDLPDGN L+K G V KDKF K+ WY + NYRTW+F +LYG+SMG+EL+T+N
Sbjct: 241 LVLNLGQDLPDGNRATLEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360
+I+E+ +DRF+LKLHTAG IAA FGMAN FARP GGYASD A + FGMRGRLWTLWI QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGLIAACFGMANFFARPAGGYASDFAAKYFGMRGRLWTLWIIQT 360
Query: 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGN 420
GG+FCVWLGRA +L AVVAMVLFSMG QAACGATF IVPFVSRR+LGI+SGLTGAGGN
Sbjct: 361 AGGLFCVWLGRANTLVTAVVAMVLFSMGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 420
Query: 421 FGSGLTQLAFFSNSKFSTATGISLMGALT--------------WGSMLLPPSKDPQRXXX 466
FGSGLTQL FFS S F+T G++ MG + WGSM LPPS DP +
Sbjct: 421 FGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPSTDPVKGTE 480
Query: 467 XXXXXXXXXXXXKLRGMHEGSLKFAENSKSERGKRVNN 504
K + MH+GSL+FAEN+KSE G+RV +
Sbjct: 481 AHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGRRVRS 518
|
|
| TAIR|locus:2205195 NRT2.2 "nitrate transporter 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1716 (609.1 bits), Expect = 1.1e-176, P = 1.1e-176
Identities = 323/509 (63%), Positives = 388/509 (76%)
Query: 9 GSSMHGVIAREQTFALEXXXXXXXXXXXXKFDLPVDSEHRAKAFKVFSFAKPHMRTFHLA 68
GSSMHGV REQ++A K++LPVD+E +A FK+FSFAKPHMRTFHL+
Sbjct: 8 GSSMHGVTGREQSYAFSVDGSEPTNTKK-KYNLPVDAEDKATVFKLFSFAKPHMRTFHLS 66
Query: 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPR 128
W+SF TCF+STFAAAPL+PIIR+NLNLTK D+GNAGVASVSGSIFSRL+MGAVCDL+GPR
Sbjct: 67 WISFSTCFVSTFAAAPLIPIIRENLNLTKHDIGNAGVASVSGSIFSRLVMGAVCDLLGPR 126
Query: 129 YGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVN 188
YG +FL++LSAP VF MSFVSDA G+I RFMIGFCLATFVSCQYW + MFN +I+GLVN
Sbjct: 127 YGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNSQIIGLVN 186
Query: 189 XXXXXXXXXXXXVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQD 248
+TQLLMP+V+E+I+ G+T FTAWRIAFF+PGWLH+IMGILVLTLGQD
Sbjct: 187 GTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGILVLTLGQD 246
Query: 249 LPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYD 308
LP GN A++K G V KDKF K+ WY + NYRTW+F +LYG+SMG+EL+T+N+I+E+ +D
Sbjct: 247 LPGGNRAAMEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFFD 306
Query: 309 RFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW 368
RF+LKLHTAG IAA FGMAN FARP GG+ASD+A + FGMRGRLWTLWI QT GG+FCVW
Sbjct: 307 RFHLKLHTAGIIAACFGMANFFARPAGGWASDIAAKRFGMRGRLWTLWIIQTSGGLFCVW 366
Query: 369 LGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQL 428
LGRA +L AVV+MVLFS+G QAACGATF IVPFVSRR+LGI+SGLTGAGGNFGSGLTQL
Sbjct: 367 LGRANTLVTAVVSMVLFSLGAQAACGATFAIVPFVSRRALGIISGLTGAGGNFGSGLTQL 426
Query: 429 AFFSNSKFSTATGISLMGALT--------------WGSMLLPPSKDPQRXXXXXXXXXXX 474
FFS S+F+T G++ MG + WGSM PPS D
Sbjct: 427 VFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSNDSVDATEHYYVGEYS 486
Query: 475 XXXXKLRGMHEGSLKFAENSKSERGKRVN 503
++ GMH S FA+ +K+E G V+
Sbjct: 487 KEEQQI-GMHLKSKLFADGAKTEGGSSVH 514
|
|
| TAIR|locus:2010391 NRT2.5 "nitrate transporter2.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1279 (455.3 bits), Expect = 2.2e-130, P = 2.2e-130
Identities = 246/477 (51%), Positives = 318/477 (66%)
Query: 38 KFDLPVDSEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTK 97
+F LPVD+E++A F++FS AKPHMR FHL+W FF CF+STFAA PL+P+IR+NLNLT
Sbjct: 20 RFALPVDAENKATTFRLFSVAKPHMRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTA 79
Query: 98 TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAA 157
TD+GNAG+ASVSG++F+R++MG CDL GPR ++ L L +APAV+ + + G+I
Sbjct: 80 TDIGNAGIASVSGAVFARIVMGTACDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMV 139
Query: 158 RFMIGFCLATFVSCQYWTTIMFNGKILGLVNXXXXXXXXXXXXVTQLLMPLVFEVIKLAG 217
RF GF LATFVS Q+W + MF+G ++G N TQL+MP+VF +I+ G
Sbjct: 140 RFFAGFSLATFVSTQFWMSSMFSGPVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMG 199
Query: 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIK 277
AT FTAWRIAFFIPG + VL GQDLPDG+ A+ K G KD KV GIK
Sbjct: 200 ATKFTAWRIAFFIPGLFQTLSAFAVLLFGQDLPDGDYWAMHKSGEREKDDVGKVISNGIK 259
Query: 278 NYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGY 337
NYR W+ + YG+ G+ELT +NII+E+ +DRF+LKL TAG IAA+FG+AN FARP GG
Sbjct: 260 NYRGWITALAYGYCFGVELTIDNIIAEYFFDRFHLKLQTAGIIAASFGLANFFARPGGGI 319
Query: 338 ASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATF 397
SD R FGMRGRLW WI QT GGV C LG+ SL ++++ M++FS+ QAACG TF
Sbjct: 320 FSDFMSRRFGMRGRLWAWWIVQTSGGVLCACLGQISSLTVSIIVMLVFSVFVQAACGLTF 379
Query: 398 GIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAFFSNSKFSTATGISLMGALT-------- 449
G+VPF+SRRSLG++SG+TGAGGN G+ LTQL FF S ++ TGI+LMG ++
Sbjct: 380 GVVPFISRRSLGVVSGMTGAGGNVGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPIC 439
Query: 450 ------WGSMLLPPSKDPQRXXXXXXXXXXXXXXXKLRGMHEGSLKFAENSKSERGK 500
WG M PS ++ K + +H GS KFAE S SERG+
Sbjct: 440 LIYFPQWGGMFCGPSS--KKVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGR 494
|
|
| TAIR|locus:2222652 NRT2.7 "high affinity nitrate transporter 2.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 196/424 (46%), Positives = 269/424 (63%)
Query: 41 LPVDSEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDV 100
+PVDS+ RA F+ FS + PH R FHLAW+S F+CF STF+ PLVP+I +LNL+ + V
Sbjct: 18 IPVDSDGRATVFRPFSLSSPHSRAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTV 77
Query: 101 GNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFM 160
AG+AS +GSIFSRL MG +CDLIGPR ++ L L+AP + S VS +I RF
Sbjct: 78 SAAGIASFAGSIFSRLAMGPLCDLIGPRTSSAILSFLTAPVILSASLVSSPTSFILVRFF 137
Query: 161 IGFCLATFVSCQYWTTIMFNGKILGLVNXXXXXXXXXXXXVTQLLMPLVFEVIKLAGATP 220
+GF LA FV+ QYW + MF+G ++GL N ++QLLMPL++ I A P
Sbjct: 138 VGFSLANFVANQYWMSSMFSGNVIGLANGVSAGWANVGAGISQLLMPLIYSTI--AEFLP 195
Query: 221 -FTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNL-GALQKKGNVNKDK----------- 267
AWR++F P V +LVL GQD P GN + Q K + +++
Sbjct: 196 RAVAWRVSFVFPAIFQVTTAVLVLLYGQDTPHGNRKNSNQNKLTIPEEEEVLVVEEDERS 255
Query: 268 -FSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGM 326
F ++ G+ NYR W+ +LYG+S G+ELTT+N+I+ + Y+RF + L AGTIAA+FG+
Sbjct: 256 SFVEILIGGLGNYRAWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGI 315
Query: 327 ANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFS 386
+NI +RP GG SD G+ FGMRGRLW LWI Q++ G+ CV LGR SL +++ M +FS
Sbjct: 316 SNIASRPAGGMISDALGKRFGMRGRLWGLWIVQSVAGLLCVLLGRVNSLWGSILVMWVFS 375
Query: 387 MGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAFFSNSKFSTATGISLMG 446
+ QAA G FG+VPFVS RSLG+++G+TG+GG G+ +TQ FS ISLMG
Sbjct: 376 VFVQAASGLVFGVVPFVSTRSLGVVAGITGSGGTVGAVVTQFLLFSGDDVRKQRSISLMG 435
Query: 447 ALTW 450
+T+
Sbjct: 436 LMTF 439
|
|
| ASPGD|ASPL0000060467 nrtB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 64/214 (29%), Positives = 107/214 (50%)
Query: 48 RAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVA 106
+A++ V + + R F +W+ F F+S +A PL+ + I+ +L++++ DV N+ +
Sbjct: 22 KARSIPVLNPFDLYGRVFFFSWIGFLVAFLSWYAFPPLLSVTIKKDLHMSQDDVANSNIV 81
Query: 107 SVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLA 166
++ G+ R I G +CD GPR LL+ A V+ QG IA RF +G A
Sbjct: 82 ALLGTFVMRFIAGPLCDRFGPRLVFVGLLICGAVPTAMAGLVTTPQGLIALRFFVGILGA 141
Query: 167 TFVSCQYWTTIMFNGKILGLVNXXXXXXXXXXXXVTQLLMPLVFE-VIKLAGATPFTAWR 225
TFV CQ W T F+ I+G N +T +MP +++ + G TP AWR
Sbjct: 142 TFVPCQVWCTGFFDKNIVGTANSLAGGFGNAGGGITYFVMPAIYDSFVHDRGLTPHKAWR 201
Query: 226 IAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQK 259
+++ +P + V + + +L D P G +K
Sbjct: 202 VSYIVPFIIIVSIALAMLFTCPDTPTGKWADREK 235
|
|
| ASPGD|ASPL0000056693 crnA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 66/210 (31%), Positives = 104/210 (49%)
Query: 45 SEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNA 103
+ +A V + + R F +W F F+S +A PL+ + IRD+L++++T + N+
Sbjct: 16 NNRKALTIPVLNPFNTYGRVFFFSWFGFMLAFLSWYAFPPLLTVTIRDDLDMSQTQIANS 75
Query: 104 GVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGF 163
+ ++ ++ RLI G +CD GPR LLL+ + V+ QG IA RF IG
Sbjct: 76 NIIALLATLLVRLICGPLCDRFGPRLVFIGLLLVGSIPTAMAGLVTSPQGLIALRFFIGI 135
Query: 164 CLATFVSCQYWTTIMFNGKILGLVNXXXXXXXXXXXXVTQLLMPLVFE-VIKLAGATPFT 222
TFV CQ W T F+ I+G N +T +MP +F+ +I+ G
Sbjct: 136 LGGTFVPCQVWCTGFFDKSIVGTANSLAAGLGNAGGGITYFVMPAIFDSLIRDQGLPAHK 195
Query: 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDG 252
AWR+A+ +P L V + +L D P G
Sbjct: 196 AWRVAYIVPFILIVAAALGMLFTCDDTPTG 225
|
|
| UNIPROTKB|Q47UD4 narK "Nitrate permease" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 59/195 (30%), Positives = 96/195 (49%)
Query: 258 QKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTA 317
Q G++ K++ ++ Y K V VLY + G EL +++ F + F+L + A
Sbjct: 279 QVNGHLFKEEVPEIHQYQFKQVA--VLNVLYFATFGSELAVVSMLPLFFAETFSLDMVYA 336
Query: 318 GTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPI 377
G +A+ + N+ +RP GG+ SD GR + L L LG + + + L +
Sbjct: 337 GMLASLYAFMNLMSRPGGGWLSDKYGR----KKTLLILTAGLALGYLAMALIDSSWPLVL 392
Query: 378 AVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSG--LTQLAFFS-NS 434
AV+ + S QA GA F VP + RR G ++G+TGA GN G+ LT L+ S +
Sbjct: 393 AVITAMACSFFVQAGEGAVFAAVPLIKRRLTGQIAGMTGAYGNVGAVVYLTVLSMVSYQT 452
Query: 435 KFSTATGISLMGALT 449
F +++G +T
Sbjct: 453 FFLVIAATAVLGFVT 467
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LXH0 | NRT26_ARATH | No assigned EC number | 0.7205 | 0.9904 | 0.9520 | no | no |
| O82811 | NRT21_ARATH | No assigned EC number | 0.7005 | 0.9846 | 0.9679 | no | no |
| Q9FJH8 | NRT24_ARATH | No assigned EC number | 0.7129 | 0.9827 | 0.9715 | yes | no |
| Q9FJH7 | NRT23_ARATH | No assigned EC number | 0.7271 | 0.9904 | 0.9573 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00022197001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (530 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 521 | |||
| PLN00028 | 476 | PLN00028, PLN00028, nitrate transmembrane transpor | 0.0 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 2e-80 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 4e-39 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-16 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 2e-10 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 1e-09 | |
| PRK11273 | 452 | PRK11273, glpT, sn-glycerol-3-phosphate transporte | 2e-09 | |
| TIGR00712 | 438 | TIGR00712, glpT, glycerol-3-phosphate transporter | 3e-07 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-04 |
| >gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Score = 814 bits (2106), Expect = 0.0
Identities = 331/479 (69%), Positives = 382/479 (79%), Gaps = 17/479 (3%)
Query: 28 SPSVPTDTTVKFDLPVDSEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVP 87
P+ P KF LPVDSEH+A F++FSFA+PHMR FHL+W+SFFTCF+STFAAAPL+P
Sbjct: 1 QPASPDPKYSKFALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLP 60
Query: 88 IIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147
IIRDNLNLTK+D+GNAG+ASVSGSIFSRL MG VCDL GPRYG++FLL+L+APAVFCMS
Sbjct: 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL 120
Query: 148 VSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMP 207
VS A G+IA RF IGF LATFVSCQYW + MFNGKI+G NG A GWG++GGGVTQLLMP
Sbjct: 121 VSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP 180
Query: 208 LVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDK 267
LVF +IK AGA FTAWRIAFF+PG LH+IMGILVLTLGQDLPDGN L+K G + KD
Sbjct: 181 LVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDS 240
Query: 268 FSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMA 327
FSKV YG+ NYRTW+ + YG+S G+ELT +NII+E+ YDRF L L TAG IAA+FG+
Sbjct: 241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLM 300
Query: 328 NIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSM 387
N+FARP GGY SDVA R FGMRGRLW LWI QTLGGVFC+WLGRA SL A+V M+LFS+
Sbjct: 301 NLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI 360
Query: 388 GTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAFFSNSKFSTATGISLMGA 447
QAACGATFGIVPFVSRRSLG++SGLTGAGGN G+ LTQL FF+ S +ST TGISLMG
Sbjct: 361 FVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGV 420
Query: 448 LT--------------WGSMLLPPSKDPQRSNEEYYYSSEWTEEEKLRGMHEGSLKFAE 492
+ WG M PSKD EE YY+SEWTEEEK +G+H+GSLKFAE
Sbjct: 421 MIIACTLPVAFIHFPQWGGMFFGPSKDAV---EEDYYASEWTEEEKEKGLHQGSLKFAE 476
|
Length = 476 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 2e-80
Identities = 123/374 (32%), Positives = 168/374 (44%), Gaps = 23/374 (6%)
Query: 63 RTFHLAWVSFFTCFISTFAAAPLVP-IIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAV 121
R +W FF F FA +PL +I+D+L L+ +GN V R+I+G +
Sbjct: 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFL 60
Query: 122 CDLIGPRYGTSFLLLLSAPAVFCMSFV-SDAQGYIAARFMIGFCLATFVSCQYWTTIMFN 180
D GPRY T+ LLL A + R IG +F SC W + F
Sbjct: 61 VDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFP 120
Query: 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVF-EVIKLAGATPFTAWRIAF-FIPGWLHVIM 238
KI G G A GWG+MGGGV Q +MP + +I AG AW AF +P + ++
Sbjct: 121 KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLP 180
Query: 239 GILVLTLGQDLPDGNL--------GALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGF 290
+L+ +G D P G GA G KVF ++ TW+ +LY
Sbjct: 181 ALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVF----RDRHTWILALLYSV 236
Query: 291 SMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRG 350
+ G L ++I + F D+F L TAG A+ G+ ARP GG SD G
Sbjct: 237 TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLG-----GA 291
Query: 351 RLWTLWIFQTLGGVFCVWLG--RAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSL 408
R + G F V LG SL + +V V + A G+TF +VP + RR+
Sbjct: 292 RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRAT 351
Query: 409 GILSGLTGAGGNFG 422
G +SGL GA GN G
Sbjct: 352 GAVSGLVGAIGNLG 365
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 4e-39
Identities = 91/385 (23%), Positives = 147/385 (38%), Gaps = 20/385 (5%)
Query: 51 AFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGN-AGVASVS 109
AF + R L+ ++F F+ +PL I+ + L++ G + +
Sbjct: 2 AFWEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILV 61
Query: 110 GSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF---VSDAQGYIAARFMIGFCLA 166
G++ RL G + D G R T +LL ++F + ++G A
Sbjct: 62 GALL-RLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120
Query: 167 TFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226
+F + F + GL G AG G++G V QL+ PLV A A F AWR
Sbjct: 121 SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV------AVAFGFLAWRN 173
Query: 227 AFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFV 286
I I +L D+P+ + VF N TW+ +
Sbjct: 174 VAGIYVVALAIAAVLAWLGMNDVPEHRAS----VKPQLPAQLKAVF----SNKDTWLLSL 225
Query: 287 LYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLF 346
LY + G + + + ++ +F L TAG IA F + ARP GG+ SD G
Sbjct: 226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR 285
Query: 347 GMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRR 406
+ + L +F G S + V + + G+ F ++P + +
Sbjct: 286 VTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK 345
Query: 407 SLGILSGLTGAGGNFGSGLTQLAFF 431
G ++G+ GA G G LAF
Sbjct: 346 ETGAVTGIVGAIGGLGGFFLPLAFG 370
|
Length = 417 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 9e-18
Identities = 69/361 (19%), Positives = 115/361 (31%), Gaps = 19/361 (5%)
Query: 67 LAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG 126
L +F + L + ++L ++ T++G A G ++ + G + D G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 127 PRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLA-TFVSCQYWTTIMFNGKILG 185
R LLL A + + F S + R + G F + F + G
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 186 LVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245
G +G + LL L+ + WR AF I L ++ +L L
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLF---------GWRAAFLILAILALLAAVLAALL 171
Query: 246 GQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEF 305
P + ++ + V + + ++ +L G
Sbjct: 172 LPRPPPES----KRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL 227
Query: 306 MYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF 365
+ L AG + G+ R G SD G R RL + L +
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSD----RLGRRRRLLLALLLLILAALG 283
Query: 366 CVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSG 424
L ES +VA++L G A +V + G SGL G+ G
Sbjct: 284 LALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343
Query: 425 L 425
L
Sbjct: 344 L 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 75/366 (20%), Positives = 122/366 (33%), Gaps = 49/366 (13%)
Query: 67 LAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG 126
L ++ FF + +P +P++ ++L L+ + G A G L+ G + D G
Sbjct: 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 127 PRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATF-VSCQYWTTIMFNGKILG 185
R LLL A ++F S + RF++G + F K G
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG 122
Query: 186 LVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245
G +G + LL L+ E WR F I L +++ +L+L L
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAE---------SLGWRWLFLILAILGLLLALLLLFL 173
Query: 246 GQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEF 305
+ + + + + +
Sbjct: 174 LR--------------------------------LLLLLALAFFLLSFGYYGLLTYLPLY 201
Query: 306 MYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF 365
+ + L AG + + FG+ I GG SD GR R L I L +
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR------RRLLLLIGLLLAALG 255
Query: 366 CVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSG 424
+ L A SL + +VA++L G A A + + G SGL G+ G
Sbjct: 256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA 315
Query: 425 LTQLAF 430
L L
Sbjct: 316 LGPLLA 321
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 78/360 (21%), Positives = 126/360 (35%), Gaps = 62/360 (17%)
Query: 65 FHLAWVSFFTCFISTFAAAPLV--------PIIRDNLNLTKTDVGNAGVASVSGSIFSRL 116
F + FI +AA L P + ++ L+KT +G G A S+
Sbjct: 24 KRWRIQIFLSIFIG-YAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKF 82
Query: 117 IMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGF--------CLATF 168
+MG + D PRY +F L+LSA F + + G+ C T
Sbjct: 83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTI 142
Query: 169 VSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAF 228
W + G + N ++GG + L+ L F WR AF
Sbjct: 143 TH---WFSRKERGTWWSIWNTSH----NIGGALAPLVALLAF-------FAFHGGWRAAF 188
Query: 229 FIPGWLHVIMGILVLTLGQDLP-------------DGNLGALQKKGNVNKDKFSKVFWYG 275
+ PG + +I+ +++L L +D P D ++K N + Y
Sbjct: 189 YFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYV 248
Query: 276 IKN----YRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFA 331
+KN +Y GI +SE L A + F +A +
Sbjct: 249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSE----VKGFSLVKANWAISLFEVAGLPG 304
Query: 332 RPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCV---WLGRAESLPIAVVAMVLFSMG 388
G+ SD +LF +GR + + L + WL S + A++LF +G
Sbjct: 305 TLLAGWLSD---KLF--KGRRGPMALIFMLLITASLVLYWLAPNGSYLL--DAILLFIIG 357
|
Length = 448 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 69/387 (17%), Positives = 125/387 (32%), Gaps = 46/387 (11%)
Query: 69 WVSFFTCFI--STFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG 126
++ + ++ FA A +P + + + L+KTD+G + S+ +MG+V D
Sbjct: 1 FIGYAAYYLVRKNFALA--MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN 58
Query: 127 PRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSC----QYWTTIMFNG 181
PR L+L A F + A + G + C W + G
Sbjct: 59 PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118
Query: 182 KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGIL 241
+ N C+ G GG + L++ G +W F +PG + +I+ ++
Sbjct: 119 TWVSFWN-CSHNVG--GGLLPPLVL---------FGIAELYSWHWVFIVPGIIAIIVSLI 166
Query: 242 VLTLGQDLP-------------DGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLY 288
L +D P + G +KK K Y + N W + Y
Sbjct: 167 CFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIF-LQYVLLNKVLWYISLGY 225
Query: 289 GFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGM 348
F + + ++ A + + + G+ SD +LF
Sbjct: 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD---KLFNG 282
Query: 349 RGR----LWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQA-ACGATFGIVPFV 403
R + I +L + I + A+ G Q + P
Sbjct: 283 RRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAP-- 340
Query: 404 SRRSLGILSGLTGAGGNFGSGLTQLAF 430
+++ G +G G G L L
Sbjct: 341 -KKAAGTAAGFVGFFAYLGGILAGLPL 366
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 30/165 (18%)
Query: 101 GNAGVASVSGSI---FSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAA 157
G+ G A SI FS+ IMG+V D PR L+L+A + M FV A IA
Sbjct: 63 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 122
Query: 158 RFMIGF------------CLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLL 205
F++ F C T V +W + G I+ + N CA ++GGG L
Sbjct: 123 MFVLLFLCGWFQGMGWPPCGRTMV---HWWSQKERGGIVSVWN-CA---HNVGGG----L 171
Query: 206 MPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLP 250
PL+F L G F W A ++P + +++ + + +D P
Sbjct: 172 PPLLF----LLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212
|
Length = 452 |
| >gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
Query: 96 TKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYI 155
+K ++G A A FS+ IMG+V D PR L+LSA + M FV A I
Sbjct: 59 SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSI 118
Query: 156 AARFMIGF------------CLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQ 203
A F++ F C T V +W + G I+ + N CA ++GGG+
Sbjct: 119 AIMFVLLFLNGWFQGMGWPPCGRTMV---HWWSQSERGTIVSIWN-CA---HNIGGGIPP 171
Query: 204 LLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLP 250
LL+ L G F W A + P +I+ + + +D P
Sbjct: 172 LLVLL--------GMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 70/380 (18%), Positives = 122/380 (32%), Gaps = 64/380 (16%)
Query: 86 VPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCM 145
P+++++L L+ G A G + + G + D G R + +++
Sbjct: 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76
Query: 146 SFVSDAQGYIAARFMIGFCLATFVSC-----QYW---------TTIMFNGKILGLVNGCA 191
+F R ++G A F W +I + + LG + G
Sbjct: 77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIG-- 134
Query: 192 GGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPD 251
G + G + W+ AF I G L +I G+L L D P
Sbjct: 135 ---GPLVGWILIHFS-----------------WQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174
Query: 252 ---------------GNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIEL 296
G L Q KG K+ +K+ R W + F + I L
Sbjct: 175 KAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQ--IKELLKDRRVWGLALGQ-FLVNIGL 231
Query: 297 TTNNI-ISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGR----LFGMRGR 351
++ L + AG +A+ G+ GG SD+ R L R
Sbjct: 232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKT 291
Query: 352 LWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGI 410
+ +L ++ ++P A +A+V A + ++ G+
Sbjct: 292 AIIAGLVLSLLMFATNYV----NIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGL 347
Query: 411 LSGLTGAGGNFGSGLTQLAF 430
GL + GN G + +
Sbjct: 348 TGGLINSLGNLGGIVGPIVI 367
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.98 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.98 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.86 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.76 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.74 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.72 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.71 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.68 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.65 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.63 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.58 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.57 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.55 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.53 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.51 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.51 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.48 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.47 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.44 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.43 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.42 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.42 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.38 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.38 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.37 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.36 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.32 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.32 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.31 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.31 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.29 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.29 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.27 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.25 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.25 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.23 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.23 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.23 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.22 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.21 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.21 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.21 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.2 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.2 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.19 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.17 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.17 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.16 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.15 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.15 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.15 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.14 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.14 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.14 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.14 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.13 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.13 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.13 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.12 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.11 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.1 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.09 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.08 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.07 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.06 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.06 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.06 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.05 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.05 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.04 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 99.03 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.03 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.02 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.02 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.02 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.02 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.01 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.01 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.99 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.99 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.99 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.98 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.95 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.94 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.92 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.92 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.91 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.91 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.88 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.86 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.82 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.81 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.79 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.76 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.76 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.73 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.73 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.71 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.68 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.68 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.66 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.63 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.58 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.55 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.49 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.47 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.46 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.43 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.42 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.41 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.4 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.39 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.35 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.35 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.32 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.32 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.28 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.26 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 98.14 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.11 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.08 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.02 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.01 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.97 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.93 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.69 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.67 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.65 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.58 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.57 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.57 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.53 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.18 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.04 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.0 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.97 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.89 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.73 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.49 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.43 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.15 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.65 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.59 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.22 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.19 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 93.53 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.5 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.05 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 89.91 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 89.8 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 88.9 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 87.11 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 86.7 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 86.14 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 85.28 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 82.92 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 82.52 | |
| PF07760 | 287 | DUF1616: Protein of unknown function (DUF1616); In | 80.25 |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=356.41 Aligned_cols=398 Identities=73% Similarity=1.299 Sum_probs=311.9
Q ss_pred ccccCCCChHHHHhhhcccccCchhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhh
Q 040770 37 VKFDLPVDSEHRAKAFKVFSFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRL 116 (521)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~ 116 (521)
+++..++|.+++.+..+.....+++++.+...+..++...++...+.+.+|.+.+++|++..+.+++.+.+.+++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~ 89 (476)
T PLN00028 10 SKFALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRL 89 (476)
T ss_pred cCCCCCcCcccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444444455555556677777778888888888888888999999999999999999999999999999999
Q ss_pred hhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhh
Q 040770 117 IMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGD 196 (521)
Q Consensus 117 ~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 196 (521)
+.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.+...+...+++|++|+++|++++++.....+
T Consensus 90 ~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~ 169 (476)
T PLN00028 90 AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGN 169 (476)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988655566789999999999999999988888
Q ss_pred hhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhh
Q 040770 197 MGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGI 276 (521)
Q Consensus 197 ~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (521)
+|..+++.+.+.+...+...+..+..|||+.|++.+++.++.+++.+++.++.|+...++.+++...++.+..+.+++.+
T Consensus 170 ~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
T PLN00028 170 LGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGV 249 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHH
Confidence 99999888887776654332222234899999999999888877777776666654322222111111222334566778
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHH
Q 040770 277 KNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLW 356 (521)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 356 (521)
+++++|.+.+.+++.+...+.+.+++|.|+.+.+|+++..++.+.++..++.+++++++|+++||++||+..+.+.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~ 329 (476)
T PLN00028 250 TNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALW 329 (476)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHH
Confidence 88999888888777777777778889999988889999999999999999999999999999999998865554555555
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhHhccc
Q 040770 357 IFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAFFSNS 434 (521)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~~~~~ 434 (521)
+..++.++.++++....+.+...+.+++++++.+...+..+++.+++.++.+|++.|+.+..+++|++++|.++...+
T Consensus 330 ~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~ 407 (476)
T PLN00028 330 IVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGS 407 (476)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHhcC
Confidence 555555554445555555555555666677776666677777777788889999999999999999999999865433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=305.79 Aligned_cols=360 Identities=19% Similarity=0.237 Sum_probs=301.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+.+++++...++++...++.+..+....|.+.+|.++|.+|+|++.+++.+.|.++.++.|.++||.++|..+.+++++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhh-hhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLA-TFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
++..++++++++.+.+.+..++.|..+| +.+++...++.|+++++||+..++++.+.++|..+.+.+..+ ..+..
T Consensus 105 ai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~-- 180 (448)
T COG2271 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL--AFFAF-- 180 (448)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH--HHHHh--
Confidence 9999999999999999999999999999 599999999999999999999999999999999888876633 22221
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChh--------hhhc--cCCCccc--cchh-hHHhhhchhHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLG--------ALQK--KGNVNKD--KFSK-VFWYGIKNYRTWVF 284 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~~~~--~~~~~~~--~~~~-~~~~~~~~~~~~~~ 284 (521)
+.+||..|++.++++++.+++.++..+|.|++.-- +..+ +++++.+ +.++ -.+.+++||.+|.+
T Consensus 181 ---~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~l 257 (448)
T COG2271 181 ---HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLL 257 (448)
T ss_pred ---ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHH
Confidence 22899999999999999999999999999986411 0001 1111111 1122 34667899999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHH
Q 040770 285 FVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGV 364 (521)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 364 (521)
++..++.+..-+++..|.|.|+.|..|+|...++...+.+-+++++|.+++||++||+.+.+ |....+++++...+
T Consensus 258 a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr----R~p~~~i~~~~i~~ 333 (448)
T COG2271 258 ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR----RGPMALIFMLLITA 333 (448)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc----cchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986432 22355555666666
Q ss_pred HHHHhhccC--cHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhH-HHHhhhhh
Q 040770 365 FCVWLGRAE--SLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNF-GSGLTQLA 429 (521)
Q Consensus 365 ~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~-g~~i~~~l 429 (521)
+++.+...+ +.+...+++++.|+...+..-+.-....| .|++..|++.|+.+.++++ |...+.+.
T Consensus 334 ~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~ 402 (448)
T COG2271 334 SLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP 402 (448)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence 666666655 45777778888888776666333223334 4899999999999999998 77777765
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=287.70 Aligned_cols=359 Identities=14% Similarity=0.098 Sum_probs=295.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+..+..+..+.++.|......+....++|++.+|+|+|..+.|++.|.|.+++.+++++...+.||+.||++++..+.++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34455677778888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
.++.+++++++||+.++++|++.|+..|. +.....+.++..|+++|++++++...+.+++.++|..++.++++.+
T Consensus 89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~---- 164 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF---- 164 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh----
Confidence 99999999999999999999999999996 7788999999999999999999999999999988888888888877
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
|||+.|++.+.++++..+..+..+| |.+..+ ++....++..+.+|+|+++...+..++.+...+.
T Consensus 165 -----GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~--------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~ 229 (394)
T COG2814 165 -----GWRATFLAIAVLALLALLLLWKLLP--PSEISG--------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFA 229 (394)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHhCC--CccCCC--------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhh
Confidence 9999999999999998888888866 221111 1111124467889999999999999999999999
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc-CcHH
Q 040770 298 TNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA-ESLP 376 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 376 (521)
..+|+.+++++..|++....+++...++++.++|.+++|++.|| +.|+ .+.....+..+.++.+.+. .+.+
T Consensus 230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-------~l~~~~~l~a~~~l~l~~~~~~~~ 301 (394)
T COG2814 230 LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-------ALIAALLLLALALLALTFTGASPA 301 (394)
T ss_pred hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-------HHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999 5543 4444444444444444444 4555
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHH
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISL 444 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~ 444 (521)
...+..+++|+..............+..|+.+..+.+++....|+|..+|..+. ...+.+++......
T Consensus 302 ~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~ 370 (394)
T COG2814 302 LALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWV 370 (394)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 666666666666655555555545556678899999999999998888888873 33333444444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=313.31 Aligned_cols=360 Identities=16% Similarity=0.158 Sum_probs=272.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+..+..+..+++.+++.++++..+++..|.+.+|+|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 55677788888999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHhh-----ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHH
Q 040770 139 APAVFCMSF-----VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEV 212 (521)
Q Consensus 139 ~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 212 (521)
+++.++.++ ++|++.+++.|+++|++.+. .+...++++||+|+++||+++|+.+.+.++|.++++.+...+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 777766654 68999999999999999985 778889999999999999999999998889988887665544332
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhc-----c---CC--Cccccc--hhhH-Hhhhchh
Q 040770 213 IKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQK-----K---GN--VNKDKF--SKVF-WYGIKNY 279 (521)
Q Consensus 213 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~---~~--~~~~~~--~~~~-~~~~~~~ 279 (521)
.. ..+||..|.+.+++.++.+++.+++.++.|+++.....+ . .+ .++++. .+.+ +..+++|
T Consensus 185 ~~------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (467)
T PRK09556 185 FF------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNP 258 (467)
T ss_pred hc------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcCh
Confidence 10 116999999999988888887777777777643211000 0 00 001111 1212 2368899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHH
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQ 359 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (521)
.+|...+..++.+...++...|+|.|+++.+|++..++++......++.+++.+++|+++||+++|+. .......
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~-----~~~~~~~ 333 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA-----LVACIAL 333 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHH
Confidence 99999999888888888888999999999899999999999999999999999999999999998751 1111111
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccc-ccccccchhhhhhhhhhhhhH-HHHhhhhh
Q 040770 360 TLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIV-PFVSRRSLGILSGLTGAGGNF-GSGLTQLA 429 (521)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-g~~i~~~l 429 (521)
......++.+....+.+...+..++.|++............ ...|++.+|++.|+.+..+++ |+.++|.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~ 405 (467)
T PRK09556 334 ALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG 405 (467)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh
Confidence 11111122222333444444555556644333222222333 345889999999999999997 66888886
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=303.71 Aligned_cols=362 Identities=15% Similarity=0.153 Sum_probs=272.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
|.+|+.+..+++.+++.++++...+...|.+.+|+|++..++|++.+++.+++++++++.|++.||+|||+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
+++.+++++++|++.+++.|+++|++.+. .+....++.|++|+++|++++++++...++|..+++.+++.+... ..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~ 160 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL---DG 160 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC
Confidence 99999999999999999999999999996 667778999999999999999999988888887777766554321 00
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChh---hhhc--------cC-----CC---ccccc--hhhHHhhh
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLG---ALQK--------KG-----NV---NKDKF--SKVFWYGI 276 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~--------~~-----~~---~~~~~--~~~~~~~~ 276 (521)
..+..|||+.|++.+++.++..++.++++||.|++.+. +.++ .. .+ ++++. ...++. .
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLRE-I 239 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHH-h
Confidence 01233999999999999888777777778888865321 0000 00 00 00000 112233 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHH
Q 040770 277 KNYRTWVFFVLYGFSMGIELTTNNIISEFMYDR-FNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTL 355 (521)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 355 (521)
++|.+|...+.+++.....+.+.+|+|.|+++. .|++..+++.......++.+++.+++|+++||+++|+ . ..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~----~--~~ 313 (412)
T TIGR02332 240 FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK----H--HT 313 (412)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH----H--HH
Confidence 457788888888888888888899999999873 4778889999999999999999999999999998764 1 11
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 356 WIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
....++..+.+++.....+....+..+++.+++.....+..+....+ .|++.|+++.|+.+..+++|++++|.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~ 389 (412)
T TIGR02332 314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLI 389 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 12222222222222222232322222333333333333333334343 5889999999999999999999999874
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=296.36 Aligned_cols=354 Identities=14% Similarity=0.029 Sum_probs=269.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHH
Q 040770 62 MRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPA 141 (521)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 141 (521)
|.....+.++.+..........+.+|.+.+++|++.++.+++.+.+.+++.++++++|++.||+|||+++..+.++++++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 43333334433333333344556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCC
Q 040770 142 VFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATP 220 (521)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~ 220 (521)
++++++++|++.++++|+++|++.+. .+...+++.|++|+++|++++++...+.++|..+++.+++.+....
T Consensus 88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~------- 160 (390)
T PRK03545 88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL------- 160 (390)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-------
Confidence 99999999999999999999999986 6778899999999999999999999888888888887777766544
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 040770 221 FTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN 300 (521)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (521)
|||+.|++.++++++..++.+...|+.|++++ +..+..++.+++|.++...+..++.....+...+
T Consensus 161 --gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T PRK03545 161 --GWRTTFLAIGGGALITLLLLIKLLPLLPSEHS------------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYS 226 (390)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc------------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887776666655444332110 1123456778888888776666665656666667
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHH-HHhhccCcHHHHH
Q 040770 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFC-VWLGRAESLPIAV 379 (521)
Q Consensus 301 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 379 (521)
+++.++.+.+|+++.+++.+.....++.++++++.+++.||+++|. .. .+..+..... ++....++.+..+
T Consensus 227 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-------~~-~~~~~~~~~~~~l~~~~~~~~~~~ 298 (390)
T PRK03545 227 YIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-------LL-IAIALLLVCLLLLLPAANSEWHLS 298 (390)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-------HH-HHHHHHHHHHHHHHHHhchHHHHH
Confidence 8888888878999999999999999999999999999999998763 22 2222222222 2333445566666
Q ss_pred HHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHH
Q 040770 380 VAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISL 444 (521)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~ 444 (521)
+..++.|++.....+.....+.+..++.++++.|+++...++|..++|.+. ...+.+++...+..
T Consensus 299 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~ 364 (390)
T PRK03545 299 VLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYV 364 (390)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH
Confidence 677777877655555555555555667899999999999999999998883 33444444444443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=297.89 Aligned_cols=358 Identities=14% Similarity=0.153 Sum_probs=264.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
++..+...++.+++.+++...+...+|.+.+++|++..+.+++.+.+.+++.+++++.|++.||+|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 44556667777888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCC
Q 040770 141 AVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGAT 219 (521)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~ 219 (521)
+.++++++++++.+++.|++.|++.|. .+...+++.|++|+++|++++++.+...++|..+++.+++.+....
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~------ 174 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY------ 174 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 999999999999999999999999985 7788899999999999999999999988899888877666655432
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhh------hh--cc-CCC--ccccchhhHH-hhhchhHHHHHHHH
Q 040770 220 PFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGA------LQ--KK-GNV--NKDKFSKVFW-YGIKNYRTWVFFVL 287 (521)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~--~~-~~~--~~~~~~~~~~-~~~~~~~~~~~~~~ 287 (521)
+||+.|++.+++.++.+++.++.+++.|+....+ .+ +. ++. .+.+..+.++ ..++++.+|...+.
T Consensus 175 ---gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (434)
T PRK11663 175 ---GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFS 251 (434)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHH
Confidence 9999999998887766666666666655421100 00 00 000 0111111122 35678889988887
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHH-HHHHHHHHHHH
Q 040770 288 YGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTL-WIFQTLGGVFC 366 (521)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~ 366 (521)
.++.+.....+.+|+|.|+.+.+|++..+++...+...+++++++++.|++.||+.+++ |+..... ..+..+..+++
T Consensus 252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~--r~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK11663 252 YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGN--RGPMNLIFAAGILLSVGSL 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCC--ccHHHHHHHHHHHHHHHHH
Confidence 77777777788889999998888999999999999999999999999999999994332 1111122 12222222222
Q ss_pred HHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 367 VWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.... ..+........+..|++.............+ .|++.++++.|+.++..++|++++|.+.
T Consensus 330 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~ 393 (434)
T PRK11663 330 WLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPL 393 (434)
T ss_pred HHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccH
Confidence 2222 2233333333333333322222222233344 4788999999999999999999999873
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=288.63 Aligned_cols=332 Identities=12% Similarity=-0.010 Sum_probs=250.9
Q ss_pred HHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHH
Q 040770 75 CFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGY 154 (521)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (521)
+...+..+++.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+....++|++.+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44556778899999999999999999999999999999999999999999999988776655555544433444799999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHH
Q 040770 155 IAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWL 234 (521)
Q Consensus 155 ~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~ 234 (521)
+++|+++|++.+...+....++|++|+++|++++++.+.+..+|..+++.+++.+.... |||+.|++.+++
T Consensus 83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~---------gWr~~f~~~~~l 153 (368)
T TIGR00903 83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG---------GLQLLIIPIAAV 153 (368)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------chHHHHHHHHHH
Confidence 99999999999876666677799999999999999999999999988887777765432 999999999999
Q ss_pred HHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCH
Q 040770 235 HVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKL 314 (521)
Q Consensus 235 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~ 314 (521)
+++..++.++.+||.|+.+++. . +.++..+.+++++++|.+|...+..++....++.+.+|+|.|+++ .|++.
T Consensus 154 ~~~~~~~~~~~lp~~p~~~~~~----~--~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~ 226 (368)
T TIGR00903 154 AAAGIILVLAALPALPFQAAEG----F--GFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLED 226 (368)
T ss_pred HHHHHHHHHHHcCCCCCCCCCC----c--chHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCh
Confidence 8888887787877766542110 0 001112457788999999999999999999999999999999976 57886
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccc
Q 040770 315 HTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACG 394 (521)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (521)
. .+....+..+.+.++ .++++||..||... + ........+.++.+..+....+....+.+..+.+++.....+
T Consensus 227 ~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r--~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (368)
T TIGR00903 227 I-AGDAVALAILAGLIG---VAVIPDRVARAGLR--S-IYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYA 299 (368)
T ss_pred H-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhH--H-HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHH
Confidence 5 566555555555554 57888988765311 1 122222233333333334444444445555556666666667
Q ss_pred ccccccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 395 ATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 395 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..+++.+|. |++.|+++.|+.+..++++++++|.+
T Consensus 300 ~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~ 335 (368)
T TIGR00903 300 IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALA 335 (368)
T ss_pred HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHH
Confidence 677776655 88999999999999999999999887
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=297.50 Aligned_cols=359 Identities=12% Similarity=0.079 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccc-hhh-----HHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHH
Q 040770 62 MRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTD-VGN-----AGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLL 135 (521)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 135 (521)
++.+...+++.++.++|...++...|.+.++++.+..+ .++ +.++.++++.++++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566678899999999999999999999999754432 222 257788999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCHHH--------HHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHH
Q 040770 136 LLSAPAVFCMSFVSDAQG--------YIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLM 206 (521)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 206 (521)
++++++++++++++|+++ ++++|+++|++.|+ ++...++++|++|+++||++.++...+..+|..+|+.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 88999999999996 778899999999999999999999887778887777666
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhh--hccCCC-ccccchhhHHhhhc-hhHHH
Q 040770 207 PLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGAL--QKKGNV-NKDKFSKVFWYGIK-NYRTW 282 (521)
Q Consensus 207 ~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~-~~~~~~~~~~~~~~-~~~~~ 282 (521)
.++...+..... ...|||+.|++.+++.++ +++.....||.|+..+... ++...+ .++.....++..++ +++.+
T Consensus 175 ~~~~~~~~~~~~-~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (490)
T PRK10642 175 VLISTIVGEANF-LDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSL 252 (490)
T ss_pred HHHHHhcCHHHh-cCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHH
Confidence 555543321111 123999999997665443 3333334444333111100 000000 00000112333333 22222
Q ss_pred H-HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHH
Q 040770 283 V-FFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTL 361 (521)
Q Consensus 283 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (521)
. .....++....++.+..|+|.|+.+.+|++....++......++.+++.++.|+++||+|||+ .+..+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~ 325 (490)
T PRK10642 253 LTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP-------FVILGSVA 325 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHH
Confidence 2 222333445567777889999998888999888888878888889999999999999999985 33333322
Q ss_pred H---HHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 362 G---GVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 362 ~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
. ++.++......+...+++..++.+++.+...+....+.+ ..|++.|+++.|+.+....+++.++|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i 397 (490)
T PRK10642 326 LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTL 397 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 1 121122222334445555556666655555555555555 4599999999998666677777778776
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=277.41 Aligned_cols=346 Identities=23% Similarity=0.298 Sum_probs=302.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+.+.+.+++.++++.+++..++.++++.+.+.+|+|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc---CHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHH
Q 040770 139 APAVFCMSFVS---DAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKL 215 (521)
Q Consensus 139 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 215 (521)
.+-++..+++. ++|++++++++.|++.+.+.+....+++|||++++|.++|++. ..|+|..+.++++|.+....
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-- 166 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-- 166 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH--
Confidence 99999999875 4559999999999999999999999999999999999999999 88999999999999999887
Q ss_pred hCCCCCCC---chHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccch-hhHHhhhchhHHHHHHHHHHHH
Q 040770 216 AGATPFTA---WRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFS-KVFWYGIKNYRTWVFFVLYGFS 291 (521)
Q Consensus 216 ~~~~~~~~---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (521)
+ ||.+..+..+..++..++.++...|.|+.... .++.. ..++...+++++|.+.+.++..
T Consensus 167 -------g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~---------~~~~~~~~~~~v~~~~~~W~lsllY~~t 230 (417)
T COG2223 167 -------GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRAS---------VKPQLPAQLKAVFSNKDTWLLSLLYFAT 230 (417)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcc---------ccccchhHHHHHhcCcchHHHHHHHHHH
Confidence 6 99999999999888899999998888875111 01111 4577888999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 040770 292 MGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR 371 (521)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (521)
++.+.++..++|.|++++||.++.+++.+.....+.+.+.++++|+++||+|.++ ........+.++..+...
T Consensus 231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-------v~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-------VTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-------HHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999875 333444444433333332
Q ss_pred c-------CcHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 372 A-------ESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 372 ~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
. .+.......++..+++.+......+.+++.+.+++.|.+.|+....+.+|++.-|..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~ 369 (417)
T COG2223 304 FLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAF 369 (417)
T ss_pred cccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHH
Confidence 2 3455566667777788888888899999988888999999999999999999988873
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=283.67 Aligned_cols=349 Identities=17% Similarity=0.162 Sum_probs=269.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHh-hcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRD-NLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLL 137 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 137 (521)
+-.++.+.+.++++++.+..++.++++.+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.++
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 345678888999999999999999999999876 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-----cCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHH
Q 040770 138 SAPAVFCMSFV-----SDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEV 212 (521)
Q Consensus 138 ~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 212 (521)
+++.+++.+++ ++++.+++.|++.|++.+.+++....+++|+|+++||+++|+.....++|..++++++|.+...
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999987 8999999999999998556889999999999999999999999888889999999888876542
Q ss_pred --HHHhCC-------CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHH
Q 040770 213 --IKLAGA-------TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWV 283 (521)
Q Consensus 213 --~~~~~~-------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (521)
+...+. .+..+||.++++..++.++.+++.+++.++.|+. +...++.+..+|+|++|.
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-------------~~~~~~~~~vlk~~~~Wl 256 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-------------RASIADQLPVLQRLHLWL 256 (462)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-------------ccCHHHHHHHhCCCchhH
Confidence 111111 1123589999999888887777777765543321 111255677899999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHH
Q 040770 284 FFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGG 363 (521)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 363 (521)
+++.+++.++.+.++..++|.|+++.+ +.........+..+...+.++++|+++||+|+++ +..++.+...
T Consensus 257 lslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-------vl~~~~i~~~ 327 (462)
T PRK15034 257 LSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR-------VTLINFIFMA 327 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-------HHHHHHHHHH
Confidence 999999999999999999999998855 3333333344556788899999999999999985 3333333222
Q ss_pred HHH---HHhhcc---CcHHHHHHHHHHHHhhhhhcccccccccccc-cc---------------------cchhhhhhhh
Q 040770 364 VFC---VWLGRA---ESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SR---------------------RSLGILSGLT 415 (521)
Q Consensus 364 ~~~---~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~---------------------~~~~~~~g~~ 415 (521)
++. .+.... .+.+...+.++...++.+...+..+-+++.. |+ ++.|.+.|+.
T Consensus 328 i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v 407 (462)
T PRK15034 328 IFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFI 407 (462)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHH
Confidence 222 111111 1344444444444455566666666665543 32 2678999999
Q ss_pred hhhhhHHHHhhhhh
Q 040770 416 GAGGNFGSGLTQLA 429 (521)
Q Consensus 416 ~~~~~~g~~i~~~l 429 (521)
+..+.+|+++.|.+
T Consensus 408 ~a~G~~Ggf~~p~~ 421 (462)
T PRK15034 408 SAIGAVGGFFIPQA 421 (462)
T ss_pred HHHHHcccchhhHH
Confidence 99999999999976
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=303.18 Aligned_cols=366 Identities=15% Similarity=0.113 Sum_probs=273.9
Q ss_pred cCchhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHH
Q 040770 57 FAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLL 136 (521)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 136 (521)
..+.+|..+.++.++.+...++...++.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34567777777788888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHH
Q 040770 137 LSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKL 215 (521)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 215 (521)
+++++.++++++++++.++++|++.|++.++ .+....+++|++|+++|++.++++..+..+|.++++.++..+......
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999996 778899999999999999999999988888888887766554432110
Q ss_pred ----hCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCC----h-hh-------hhccC-C----------------
Q 040770 216 ----AGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGN----L-GA-------LQKKG-N---------------- 262 (521)
Q Consensus 216 ----~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~----~-~~-------~~~~~-~---------------- 262 (521)
.......+||+.|++.+++.++. ++.++++||.|.-. + ++ ..+.. .
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 00012237999999887775554 44555556555210 0 00 00000 0
Q ss_pred ----------Ccccc----------------chhhHHhhhc---hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----
Q 040770 263 ----------VNKDK----------------FSKVFWYGIK---NYRTWVFFVLYGFSMGIELTTNNIISEFMYDR---- 309 (521)
Q Consensus 263 ----------~~~~~----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 309 (521)
+.+.. .|..++.+++ .++++.+++..++....++++..|+|.++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~ 479 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADD 479 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0112233332 23456777777888888999999999875431
Q ss_pred c-----------------CCCH----------------------------------------------------------
Q 040770 310 F-----------------NLKL---------------------------------------------------------- 314 (521)
Q Consensus 310 ~-----------------g~s~---------------------------------------------------------- 314 (521)
+ +++.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 559 (742)
T TIGR01299 480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT 559 (742)
T ss_pred HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence 0 0000
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHH
Q 040770 315 -----------------------------------HTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQ 359 (521)
Q Consensus 315 -----------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (521)
....+...+..++.+++.+++|+++||+|||+ ++.++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~-------~l~~~~ 632 (742)
T TIGR01299 560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR-------MLAGSM 632 (742)
T ss_pred chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHH
Confidence 01233455677889999999999999999985 666777
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 360 TLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
++.+++++++.+.++....++..++++++.++.++....+++++ |++.|++++|+.+..+.+|++++|++.
T Consensus 633 ~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 633 VLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666666666666677777777777777777755 999999999999999999999999884
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=294.76 Aligned_cols=365 Identities=12% Similarity=0.083 Sum_probs=279.2
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhcchhchHHHHh----------------------hcCCCccchhhHHHHHHHHHHHHh
Q 040770 58 AKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRD----------------------NLNLTKTDVGNAGVASVSGSIFSR 115 (521)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~s~~~~~~~~~~ 115 (521)
.+.++.+...+++++.+.+.++...+...+.+.+ |++++..+.|++.+.+.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 3566777888888899999999988888888776 789999999999999999999999
Q ss_pred hhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh--ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhh
Q 040770 116 LIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF--VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAG 192 (521)
Q Consensus 116 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~ 192 (521)
++.|+++||+|||+++.++.++++++.+++.+ ..+++.+++.|+++|++.+. .+....++.||+|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999888754 36788999999999999996 7788999999999999999999998
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhc-------c--CCC
Q 040770 193 GWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQK-------K--GNV 263 (521)
Q Consensus 193 ~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------~--~~~ 263 (521)
.+..+|..+++.+++.+... ..+||+.|++.+++.++..++.+.+.++.|+.+++..++ . +++
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~--------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~ 245 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCES--------WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQK 245 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhc--------cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhccccc
Confidence 88888887777665554432 128999999999998888777777777766543211100 0 000
Q ss_pred ccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q 040770 264 NKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAG 343 (521)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 343 (521)
.+.+....+++.++++.+|...+..++.+...+.+.+|+|.|+.+.+|++..+.++..++..++.+++.+++|+++||++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 246 GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLK 325 (465)
T ss_pred CCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111234778899999999999999888888888999999999989999999999999999999999999999999988
Q ss_pred cccccchhHH---HHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhh
Q 040770 344 RLFGMRGRLW---TLWIFQTLGGVFCVWLGR-AESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGG 419 (521)
Q Consensus 344 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (521)
+|+..+.... ...++..+.++..+.... ..+....++++.+.+.+.+...+.......+..++.+|.+.|+.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 405 (465)
T TIGR00894 326 SSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPG 405 (465)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHH
Confidence 7643322111 111111111121212222 233444444455555555445555555555666779999999999999
Q ss_pred hHHHHhhhhhH
Q 040770 420 NFGSGLTQLAF 430 (521)
Q Consensus 420 ~~g~~i~~~l~ 430 (521)
.+++.++|.+.
T Consensus 406 ~l~~~i~p~l~ 416 (465)
T TIGR00894 406 FIGGLIASTLA 416 (465)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=287.35 Aligned_cols=352 Identities=15% Similarity=0.124 Sum_probs=271.4
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+++|..+.+.++..++.+++....++..|.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 46677788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
.++.++++++++++.+++.|+++|++.+. .+...+++.|++|+++|++++++.+.+..+|..+++.++..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------ 164 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG------ 164 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 99999999999999999999999999886 67888999999999999999999988877777766655543322
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
..+||+.|++.+++.++..++..++.||.|+..+ ++...+++++..+...+..+.+..+...+..++.....+.
T Consensus 165 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK11551 165 ---DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ---AAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYF 238 (406)
T ss_pred ---ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHh---ccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2389999999887766666666666565443211 1111111111112222222233444444444555555666
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHH
Q 040770 298 TNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPI 377 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (521)
...++|.|+.+ .|+++.+.+.+.+...++.++++++.|++.||+++|+ .+..+.+..+++++.+...++.+.
T Consensus 239 ~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 310 (406)
T PRK11551 239 LLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-------VVLLIYAGILASLAALAAAPSFAG 310 (406)
T ss_pred HHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHhcCcHHH
Confidence 77788999877 5999999999999999999999999999999999875 333344444444444455556665
Q ss_pred HHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 378 AVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 378 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
..+..++.+++.....+..+++.. ..|++.|+++.|+.+....+|..++|.+.
T Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 311 MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 666666777777666677777766 45899999999999999999999999983
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=293.89 Aligned_cols=354 Identities=15% Similarity=0.035 Sum_probs=280.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
+|..+..++++.++..+|...++..+|.+.+|+|.+..+.+|+.+.|.+++.++.+++|+++||+|||++++++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCC
Q 040770 141 AVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGA 218 (521)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~ 218 (521)
+++++++++|++.++++|+++|+|.+. .+.....+.+++ |+++|++++++......+|..+||.+++.+.+.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~------ 157 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH------ 157 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------
Confidence 999999999999999999999999986 566777777776 678999999999988888887777776666543
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhcc------------------CCCccccc------------
Q 040770 219 TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKK------------------GNVNKDKF------------ 268 (521)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------~~~~~~~~------------ 268 (521)
.+|||.|++...+.++..++.++.+|+.|+++.++.+.. ........
T Consensus 158 ---~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
T PRK14995 158 ---FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL 234 (495)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 299999999988877777777777666543321111000 00000000
Q ss_pred ------------hh--hHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 040770 269 ------------SK--VFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPF 334 (521)
Q Consensus 269 ------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 334 (521)
.+ .-.+.+++|.++...+..++.....+....++|.|+++.+|+++.++|+......++..++.++
T Consensus 235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~ 314 (495)
T PRK14995 235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPI 314 (495)
T ss_pred HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0124577888877777777777777777789999999999999999999999999999999999
Q ss_pred hHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhh---ccCcHHHHHHHHHHHHhhhhhccccccccc-ccccccchhh
Q 040770 335 GGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG---RAESLPIAVVAMVLFSMGTQAACGATFGIV-PFVSRRSLGI 410 (521)
Q Consensus 335 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 410 (521)
.|++.||+++|+ .+..+.++..+++.++. ...+.+..+...++.|++.+...+...... ..+|++.++.
T Consensus 315 ~g~l~~r~g~~~-------~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~ 387 (495)
T PRK14995 315 AGILVSRLGLRL-------VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA 387 (495)
T ss_pred HHHHHHHcCchH-------HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch
Confidence 999999999874 44444444444433332 223455556677888888887777666554 4679999999
Q ss_pred hhhhhhhhhhHHHHhhhhhH
Q 040770 411 LSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 411 ~~g~~~~~~~~g~~i~~~l~ 430 (521)
+.++.++..++|+.+|+.+.
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998863
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=285.49 Aligned_cols=351 Identities=13% Similarity=0.073 Sum_probs=241.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcC---CCccchhhHH---HHHHHHHHHHhhhhHhhhhhcCCcHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLN---LTKTDVGNAG---VASVSGSIFSRLIMGAVCDLIGPRYGTSFL 134 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~---s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 134 (521)
++..+...+++.+++++|...++...|.+.++++ .+..+.+... +..+++..++++++|+++||+|||+++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3344556677889999999999999999999985 4555544444 444555559999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCHH--------HHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhH
Q 040770 135 LLLSAPAVFCMSFVSDAQ--------GYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLL 205 (521)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 205 (521)
.++++++++++++++++. .++++|+++|++.|+ ++...++++|++|+++|+++.++.+.+...|..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 588999999999996 78889999999999999999999877777777777665
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHH
Q 040770 206 MPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFF 285 (521)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (521)
...+...+.+... ...|||++|++.+++.++.. ++.+..||+++.+.++.+ + ...+++++++++.+...
T Consensus 180 ~~~~~~~~~~~~~-~~~gWr~~F~i~~~~~ll~~----~~~~~~~e~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~ 248 (432)
T PRK10406 180 VVVLQQTLEDAEL-REWGWRIPFALGAVLAVVAL----WLRRQLDETSQQETRALK--E----AGSLKGLWRNRRAFIMV 248 (432)
T ss_pred HHHHHHhCCHHHH-hccchHHHHHHHHHHHHHHH----HHHhcCCCCchHHHhhhc--c----cccHHHHHhhHHHHHHH
Confidence 5554433211000 12399999998877655432 222233444332211111 1 12356677888887766
Q ss_pred HHHHHH-HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHH
Q 040770 286 VLYGFS-MGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGV 364 (521)
Q Consensus 286 ~~~~~~-~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 364 (521)
+...+. ...++.+.+|+|.|+.+.+|++..+.+...++..++..++.++.|+++||++||+ ...+..++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-------~~~~~~~~~~~ 321 (432)
T PRK10406 249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-------SMLCFGSLAAL 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-------HHHHHHHHHHH
Confidence 655543 5567778889999998888999989988888888888888999999999999885 22222222211
Q ss_pred HH---HH-hhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhH-HHHhhhhh
Q 040770 365 FC---VW-LGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNF-GSGLTQLA 429 (521)
Q Consensus 365 ~~---~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~-g~~i~~~l 429 (521)
.. .. .....+.......+.+..++.+...+....+.+| .|++.|+++.|+.+..+++ .+...|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~ 392 (432)
T PRK10406 322 FTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYV 392 (432)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHH
Confidence 11 11 1112233322222222222233333444555554 4889999999999987774 24446664
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=279.20 Aligned_cols=319 Identities=14% Similarity=0.074 Sum_probs=246.0
Q ss_pred hcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 040770 80 FAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARF 159 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 159 (521)
...++.+|.+++|+|+|..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++++++|++.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHH
Q 040770 160 MIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIM 238 (521)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (521)
++|++.+. .+....++.+++| ++|+++++++..+..+|..+|+.+++.+.... .+||+.+.+.++..++.
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--------~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--------ETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHH
Confidence 99999996 6677788999996 88999999998888888888888777665432 28999988776665544
Q ss_pred HHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH
Q 040770 239 GILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAG 318 (521)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~ 318 (521)
.+..++..++.|++++ + ++. ..++.+++++.|...+..++....+....+|+|.|+.+ +|.+..+++
T Consensus 177 ~~~~~~~~~~~~~~~~----~----~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag 243 (393)
T PRK09705 177 LFAWWWQSAREVASSH----K----TTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSG 243 (393)
T ss_pred HHHHHHHhcCCCcccc----C----CCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhh
Confidence 3333333232222110 0 000 12344567888877777777777777888999999987 699999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHhhhhhcccccc
Q 040770 319 TIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR-AESLPIAVVAMVLFSMGTQAACGATF 397 (521)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (521)
...++.+++.++++++.+++.||+++|+ ....+..+..++.+.+.. ..+.... ..++.+++.+...+...
T Consensus 244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~ 314 (393)
T PRK09705 244 SLLALMTLGQAAGALLMPAMARHQDRRK-------LLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCL 314 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHH
Confidence 9999999999999999999999999875 444444444444333322 2222222 23445666666666554
Q ss_pred ccc-ccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 398 GIV-PFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 398 ~~~-~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
... ... +++.++++.|+.+..+++++.++|.+
T Consensus 315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~ 348 (393)
T PRK09705 315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWF 348 (393)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 344 45788999999999999999999887
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=278.23 Aligned_cols=342 Identities=11% Similarity=0.075 Sum_probs=257.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH
Q 040770 60 PHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA 139 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 139 (521)
..|+.+..+.++.+......+...+.+|.+.+++|+++++.++..+++.++..+++++.|++.||+|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~ 96 (394)
T PRK10213 17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 96 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 34555555555555555555566678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCC
Q 040770 140 PAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGA 218 (521)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~ 218 (521)
++.+++++++|++.+++.|+++|++.+. .+...+++.|++|+++|++++++.....++|..+++.+++.+....
T Consensus 97 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~----- 171 (394)
T PRK10213 97 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI----- 171 (394)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 9999999999999999999999999996 6788899999999999999999999988899988888777776543
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 040770 219 TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTT 298 (521)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (521)
+||+.|++.+++.++..+......|+.|+ ++ + +..+..++.+++|.++...+..++.+...+..
T Consensus 172 ----gw~~~f~~~~~l~~~~~l~~~~~~p~~~~---~~-----~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T PRK10213 172 ----GWRNVFNAAAVMGVLCIFWIIKSLPSLPG---EP-----S----HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAF 235 (394)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHCCCCCc---cc-----c----cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887766554444333333221 10 0 01123456788999888777666666666666
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHH
Q 040770 299 NNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIA 378 (521)
Q Consensus 299 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (521)
.+++++++.+.+|+++...+++....+++.+++.++.+++.||.+++. ......+.....+++....++.+..
T Consensus 236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~-------l~~~~~~~~~~~~~l~~~~~~~~~~ 308 (394)
T PRK10213 236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA-------LAGAPLVLAVSALVLTLWGSDKIVA 308 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH-------HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 667655445567999999999999999999999999999999854431 2222222233333333344556666
Q ss_pred HHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 379 VVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
....++.|++.+...+...+.+.+.-++..+.+.++.....++|..+++.+
T Consensus 309 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l 359 (394)
T PRK10213 309 TGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAI 359 (394)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888887777766666553323556677777777777888888877
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=279.71 Aligned_cols=345 Identities=15% Similarity=0.141 Sum_probs=265.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
.++++..+..++.+++........++.+|.+.+++|+|.++.+++.+.+.+++.++++++|++.||+|||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556677777888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
+++.++++++++++.+++.|+++|++.+. .+....++.|++|+++|++++++.+....+|..+++.+.+.+..
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------ 156 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA------ 156 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 99999999999999999999999999985 66788899999999999999998877777777666655443322
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
...+||+.|++.+++.++..++.++ ++.|+.++++. ++ +++. .+ ...++.++...+..++....++.
T Consensus 157 --~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~-~~---~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~ 223 (394)
T PRK03699 157 --RSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAP-KA---DKPV----AK-EKWGIGVLFLAIAALLYILAQLT 223 (394)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCc-cc---cCcc----cc-ccCChHHHHHHHHHHHHHHHHHH
Confidence 1228999999988877665544433 22333211110 00 0000 11 12245677777777776677778
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHH
Q 040770 298 TNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPI 377 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (521)
+..|+|.|+++.+|+++.+.+.+.+...++..+++++.++++||+++|+ .+.....+..+.+.++...++.+.
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~ 296 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-------ILTVLAGLALVLMYLFVNTDDPSH 296 (394)
T ss_pred HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHHcCCchH
Confidence 8899999999888999999999999999999999999999999999875 333333444444444444555555
Q ss_pred HHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 378 AVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 378 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..+..++.|++.+..++...+...+..++.++...+......++|..++|.+
T Consensus 297 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~ 348 (394)
T PRK03699 297 LLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVV 348 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 5566677777777677766666555545556778888888889999999987
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=281.57 Aligned_cols=349 Identities=16% Similarity=0.139 Sum_probs=267.8
Q ss_pred HHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCH
Q 040770 72 FFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDA 151 (521)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 151 (521)
+++.+++...++...|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 45677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHH
Q 040770 152 QGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFI 230 (521)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (521)
+.++++|+++|++.+. .+....++.|++|+++|++++++.+...++|..+++.+++.+.... +||+.|++
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~~~~~~~ 153 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF---------SWQWAFII 153 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC---------CchHHHHH
Confidence 9999999999999986 6788899999999999999999999999999988877666554432 89999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCChhhhhcc-------------CCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 231 PGWLHVIMGILVLTLGQDLPDGNLGALQKK-------------GNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
.+++.++..++.++..++.|++++...+++ ..++++..+...++.+++|+++...+..++.......
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGF 233 (399)
T ss_pred HHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHH
Confidence 998888777777766666555322111000 0011112234567788899999998888888888888
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchh-HHHHHHHHHHHHHHHHHhhccCcHH
Q 040770 298 TNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGR-LWTLWIFQTLGGVFCVWLGRAESLP 376 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (521)
+..+.|.|+.+.+|.++.+.+++.+...++.+++.++.+++.||++||+..... ......+..+..+........++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (399)
T TIGR00893 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY 313 (399)
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 889999999988899999999999999999999999999999999998411000 0011111111111111111122333
Q ss_pred HHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
... ...+.+.+.....+..+++..+ .|++.|+++.|+.+...++|+.++|.+.
T Consensus 314 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~ 367 (399)
T TIGR00893 314 AAL-ALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI 367 (399)
T ss_pred HHH-HHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 322 3333333333356666777664 4889999999999999999999999873
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=280.00 Aligned_cols=356 Identities=17% Similarity=0.237 Sum_probs=251.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH
Q 040770 60 PHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA 139 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 139 (521)
.+|..+....+.....++++..++...|.+.++ |++..+.+++.+.+.++++++++++|+++||+|||++++++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 345555555566666666666677888999888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc----cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHH-HHhHHHHHHHHH
Q 040770 140 PAVFCMSFV----SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGV-TQLLMPLVFEVI 213 (521)
Q Consensus 140 ~~~~~~~~~----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-g~~~~~~l~~~~ 213 (521)
++.++++++ .+++.+++.|++.|++.+. .+.....+.+++|+++|++++++++.+.++|..+ +++++..+..
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-- 182 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-- 182 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--
Confidence 999988876 3788899999999999885 6677788999999999999999998887777543 3332222211
Q ss_pred HHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChh----hhhcc------CC-CccccchhhH-HhhhchhHH
Q 040770 214 KLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLG----ALQKK------GN-VNKDKFSKVF-WYGIKNYRT 281 (521)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~------~~-~~~~~~~~~~-~~~~~~~~~ 281 (521)
..+||+.|++.+++.++..++.+++.++.|++... +.+++ .. +++.+..+.+ ...++++.+
T Consensus 183 -------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (452)
T PRK11273 183 -------FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLL 255 (452)
T ss_pred -------hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHH
Confidence 11899999999988888777777777776654210 00000 00 0011111212 236788999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHH
Q 040770 282 WVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTL 361 (521)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (521)
|...+..++.+...+....++|.|+++..|++..+++....+..++.+++.++.|+++||+++++. .. .......+
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~---~~-~~~~~~~l 331 (452)
T PRK11273 256 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---GA-TGVFFMTL 331 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---ch-HHHHHHHH
Confidence 998888888887778888899999998889999999998888999999999999999999954320 11 11111122
Q ss_pred HHHHHHH--hhccCcHHHHHHHHHHHHhhhhhccccccccc-ccccccchhhhhhhhhhhhhHHHHh-hhhh
Q 040770 362 GGVFCVW--LGRAESLPIAVVAMVLFSMGTQAACGATFGIV-PFVSRRSLGILSGLTGAGGNFGSGL-TQLA 429 (521)
Q Consensus 362 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i-~~~l 429 (521)
..+..+. .....+.+..++.+++.|.+..........+. ...|++.+|+++|+.+...++|+.+ +|.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v 403 (452)
T PRK11273 332 VTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 403 (452)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 2222222 21222333333444444443322222222333 3558899999999999998888765 6766
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=275.27 Aligned_cols=348 Identities=12% Similarity=0.012 Sum_probs=267.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
.+.....+.+..++..++...+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34445555666677777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCC
Q 040770 141 AVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGAT 219 (521)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~ 219 (521)
+.+++.++++++.+++.|+++|++.+. .+....++.|++|+++|.+++++......+|..+++.+++.+.+.
T Consensus 91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------- 163 (406)
T PRK15402 91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV------- 163 (406)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 999999999999999999999999886 567788999999999999999988777667776666665554432
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 040770 220 PFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTN 299 (521)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (521)
.+||+.|++.+++.++..+..++..|+.+++. .+ +.+.++..+.++..+++|+++...+..++.......+.
T Consensus 164 --~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (406)
T PRK15402 164 --LPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE---KLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWI 235 (406)
T ss_pred --cCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc---cccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 28999999998887776665555544432211 00 01112234566778899999888877766666566666
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc-----cCc
Q 040770 300 NIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR-----AES 374 (521)
Q Consensus 300 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 374 (521)
.+.|.++.+.+|+++.+.++......++.+++.++.+++.||+++|+ ...++.++..++..++.. ..+
T Consensus 236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (406)
T PRK15402 236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS-------LIRMGLWPMVAGLLLAALATVISSHA 308 (406)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHccccc
Confidence 77888888888999999998887788889999999999999999875 344444433333333221 234
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 375 LPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.+...+..++.+++.+...+.........+++.+|++.++.+....++..+++.+.
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 364 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELS 364 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677778888777666555544444568999999999999999988888873
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=278.21 Aligned_cols=358 Identities=16% Similarity=0.174 Sum_probs=260.2
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHH
Q 040770 58 AKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLL 137 (521)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 137 (521)
++.+|+.+..+++.++...++....++..|.+++++|++..+.+++.+++.++..+++++.|+++||+|||++++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 040770 138 SAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA 216 (521)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~ 216 (521)
.+++.++++++++++.+++.|++.|++.+. .+...+++.|++|+++|++++++.+.+..+|..+++.+++.+....
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~--- 163 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW--- 163 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 999999999999999999999999999986 6788899999999999999999999888888888887766665432
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccC-CCc------cccc-hh-------hHHhhh-chh-
Q 040770 217 GATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKG-NVN------KDKF-SK-------VFWYGI-KNY- 279 (521)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~------~~~~-~~-------~~~~~~-~~~- 279 (521)
+ .+||+.|++.++..++. ++.....|+.++..+++.+++. .+. .++. +. ..+... +++
T Consensus 164 ---~-~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
T TIGR00891 164 ---G-DGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWP 238 (405)
T ss_pred ---C-ccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhH
Confidence 0 15999998866554433 3333333443221111000000 000 0000 00 000000 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHH
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQ 359 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (521)
.+........+..........++|.|+.+.+|++..+.+.+.+...++.+++.++.+++.||++||+ .+..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~-------~~~~~~ 311 (405)
T TIGR00891 239 TFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK-------AYVCSL 311 (405)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-------hhHHHH
Confidence 1222222223333334455677899998888999999999999999999999999999999999885 333333
Q ss_pred HHHHH-HHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 360 TLGGV-FCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 360 ~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
++..+ ...+.....+.+...+..++.+++.....+....++.+ .|++.++++.|+.+...++|+.++|.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 384 (405)
T TIGR00891 312 LAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG 384 (405)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 33322 22222333444444455455565555555655666554 5889999999999999999999999973
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.85 Aligned_cols=355 Identities=14% Similarity=0.056 Sum_probs=262.3
Q ss_pred HHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHH
Q 040770 74 TCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQG 153 (521)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (521)
+.....+.+++..|.+.+++|++.++.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++++++|++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (377)
T TIGR00890 14 FTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAA 93 (377)
T ss_pred HHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 33334667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHH
Q 040770 154 YIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPG 232 (521)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~ 232 (521)
++++|++.|++.+. .+.....+.+++| ++|++++++...+.++|..+++.+...+.+ ..+||+.|++.+
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~f~~~~ 163 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---------LEGVPAAFIYMG 163 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---------cccHHHHHHHHH
Confidence 99999999999985 6677778889986 679999999988888887654433332222 228999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 040770 233 WLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNL 312 (521)
Q Consensus 233 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 312 (521)
++.++..+..+++.++.|+++.+ ++.+ .++.....++.++++.++...+..++..........+.+.|.++ +|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (377)
T TIGR00890 164 IIFLLVIVLGAFLIGYPPGQLIK---TNIE--VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGL 237 (377)
T ss_pred HHHHHHHHHHHHheecCchhccc---cCcc--cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCC
Confidence 98888777777666553332111 1100 01111245667788888877776666655555555666767654 689
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc--HHHHHHHHHHHHhhhh
Q 040770 313 KLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES--LPIAVVAMVLFSMGTQ 390 (521)
Q Consensus 313 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~ 390 (521)
+..+.+.+.+...++.++++++.|++.||++||+ .+..+..+..++.+++...++ ........++.+++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 310 (377)
T TIGR00890 238 SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-------TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG 310 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence 9888999999999999999999999999999885 444455555554444444432 2223344455666666
Q ss_pred hccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHHHHHHHHH
Q 040770 391 AACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISLMGALTWG 451 (521)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~ 451 (521)
...+....+..+ .|+++++++.|+.+....+|..++|.+. ...+.+++...+.+.+++.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 555555555554 4889999999999999999999999874 333444455555555444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=279.45 Aligned_cols=351 Identities=13% Similarity=0.157 Sum_probs=252.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+.+++.+...++.++...++.....+..|.+.+++|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
+++.++++++++++.++++|+++|++.+. .+....++.|++|+++|++++++...+..+|..+++.+.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~------ 167 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE------ 167 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc------
Confidence 99999999999999999999999999986 77888999999999999999999988777777776655544433
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhcc--CCCcccc----chhhHHhhhchhHHHHHHHHHH--
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKK--GNVNKDK----FSKVFWYGIKNYRTWVFFVLYG-- 289 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-- 289 (521)
..+||+.|++..+..++ . +++....||+++.+.++. +.++.+. ....++..++++.++.......
T Consensus 168 ---~~~w~~~f~i~~~~~~~-~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (426)
T PRK12307 168 ---AYGWRAAFFVGLLPVLL-V---IYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVL 240 (426)
T ss_pred ---cCCHHHHHHHHHHHHHH-H---HHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHH
Confidence 23899999885443222 2 222222344432211110 0000111 1124567777777765443322
Q ss_pred -HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 040770 290 -FSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW 368 (521)
Q Consensus 290 -~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (521)
..+...+.+..++|.|+.+. |+++...+.+.+...++.++++++.+++.||++||+ ....+.++..+.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-------~~~~~~~~~~~~~~~ 312 (426)
T PRK12307 241 FSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-------TFSIGLLMSFLFIFP 312 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHH
Confidence 22333344667889988774 999999999989999999999999999999999875 444444444333333
Q ss_pred hhccCcHHHHHHHHHHHHhhh--hhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 369 LGRAESLPIAVVAMVLFSMGT--QAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.....+.....+..++++.+. .+..+....++. ..|++.+|++.|+.+....+++.++|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~ 377 (426)
T PRK12307 313 LFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAA 377 (426)
T ss_pred HHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHH
Confidence 222221111222223333322 222233334444 45889999999999999999999999973
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=274.76 Aligned_cols=354 Identities=32% Similarity=0.536 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
++..++++++.+.....+.+..|. +++++|++..+.+++.+++.+++.++++++|+++||+|||+.++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 345678888888899999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc-CHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh-CCCCC
Q 040770 144 CMSFVS-DAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA-GATPF 221 (521)
Q Consensus 144 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~-~~~~~ 221 (521)
++++++ +++.+++.|+++|++.+...+...+++|++|+++|++++++...+.++|..+++.+++.+....... +..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999 9999999999999996666677889999999999999999999888899999988887776644321 11123
Q ss_pred CCchHHH-HHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCC----ccccchhhHHhhhchhHHHHHHHHHHHHHHHHH
Q 040770 222 TAWRIAF-FIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNV----NKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIEL 296 (521)
Q Consensus 222 ~~wr~~f-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (521)
.+||+.| ++.+++..+..++.+.+.++.|++++++.+.+... .+++..+..++.+++|+++...+..++......
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFL 242 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 4899999 44466655555555555555554322111111000 001111245667888888888888877777777
Q ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC--c
Q 040770 297 TTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE--S 374 (521)
Q Consensus 297 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 374 (521)
....+.|.|+++.+|+++.+++.+..+..+..+++++++|++.||+++|+ ...........+..++.+.... +
T Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (366)
T TIGR00886 243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR-----KLLMSFLGVAMGAFLVVLGLVSPLS 317 (366)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch-----hHHHHHHHHHHHHHHHHhcCCCcch
Confidence 88889999999989999999999898999999999999999999999874 1122222222222222222232 4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHH
Q 040770 375 LPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGS 423 (521)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 423 (521)
.+...+...+.+++.+...+..+++.+++.++++|+++|+.+..+++|+
T Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 5555555666666677777777777777777899999999999888763
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=271.72 Aligned_cols=345 Identities=16% Similarity=0.115 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV 142 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 142 (521)
+.+..+....++..+....+.+.+|.+.+++|.++.+.+++.+++.++..+++++.|++.||+|||+++..+.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 84 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS 84 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence 33444444456666777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCC
Q 040770 143 FCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPF 221 (521)
Q Consensus 143 ~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~ 221 (521)
++++++++++.+++.|++.|++.+. .+...+++.|++|+++|++++++.+....+|..+++.+++.+....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 156 (385)
T TIGR00710 85 LGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-------- 156 (385)
T ss_pred HHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 9999999999999999999999996 6788899999999999999999999998999888887777665533
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhh
Q 040770 222 TAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNI 301 (521)
Q Consensus 222 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (521)
+||+.|++.+++.++..++.++..|+.++.+++ ++.++.++.+++.+++|+++...+...+.....+....+
T Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (385)
T TIGR00710 157 -SWHAIFAFLSLAGILLSALIFFILPETLPYEAR-------IQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSG 228 (385)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc-------CCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHc
Confidence 899999999888777776666665443322110 111222355677888999988887777777777777788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc---c--CcHH
Q 040770 302 ISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR---A--ESLP 376 (521)
Q Consensus 302 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~ 376 (521)
.|.++.+.+|.++.+.+.+.....++.+++.++.+++.||+++|+ ....+..+..++.+++.. . .+..
T Consensus 229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (385)
T TIGR00710 229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-------LLRMGLILFAVSAVLLEITAILGLGSWA 301 (385)
T ss_pred ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 899988888999999999999999999999999999999999875 222333333222222211 1 2233
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHh-hhhhH
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGL-TQLAF 430 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i-~~~l~ 430 (521)
......++.|++.+...+.......+..++.++++.++.+.....++.+ ++.+.
T Consensus 302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 302 MIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566677777777776666655555578999999999888764444 44444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=279.48 Aligned_cols=346 Identities=21% Similarity=0.255 Sum_probs=265.8
Q ss_pred HHHHHHHHhhhhcchhchH-HHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 69 WVSFFTCFISTFAAAPLVP-IIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
+++.++..++.....+.+| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 5667778888888888999 899999999999999999999999999999999999999999999999999999777777
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~ 226 (521)
++|++.++++|++.|++.+. .+...+++.|++|+++|++++++.+...++|..+++.+++.+.... +||+
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---------~~~~ 152 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF---------GWRW 152 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC---------HHCC
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc---------cccc
Confidence 78899999999999999985 7789999999999999999999999998888887777666554322 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCC-CccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 040770 227 AFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGN-VNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEF 305 (521)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (521)
.|++.+++.++..++..++.++.|++++.+.++++. +.+++..+.++...++|.+|......++..........++|.|
T Consensus 153 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 153 AFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence 999999998887775555554433332222111110 0112222236667777777645555555555677788899999
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 040770 306 MYDRFNLK-LHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVL 384 (521)
Q Consensus 306 l~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (521)
+.+.+|++ ..+.+.+..+..+..+++.++.+++.||+++++ .......+..+..+.+.......+....+...++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR----RLLIAILLLILGALGLLLLPFSSSPVWLIIALFL 308 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88888999 899999999999999999999999999999864 2222222333233232223333455666777888
Q ss_pred HHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhh
Q 040770 385 FSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQ 427 (521)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~ 427 (521)
.|++.+...+...++..+ .|++.+|++.|+.+...++++.++|
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 898888888888888764 5889999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=281.20 Aligned_cols=357 Identities=15% Similarity=0.092 Sum_probs=267.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH
Q 040770 60 PHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA 139 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 139 (521)
.+|.++...++.....+.....++..+|.+.+++|++.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.+
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 34666655556555555566667888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHH-HHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 140 PAVFCMSFVSDAQGYIA-ARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 140 ~~~~~~~~~~~~~~l~~-~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
+++++++++++++.+++ .|+++|++.+. .++...++.++++ ++|++++++.+.+..+|..+++.+++.+....
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~---- 170 (455)
T TIGR00892 96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF---- 170 (455)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh----
Confidence 99999999999999875 57999999985 5677788899995 78999999999998898888877776665544
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCC--hhhhhc----cCCCcc---ccch---hhH--HhhhchhHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGN--LGALQK----KGNVNK---DKFS---KVF--WYGIKNYRTWV 283 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~----~~~~~~---~~~~---~~~--~~~~~~~~~~~ 283 (521)
|||+.|++.+++.++..+..+++.+..++.+ +.+.++ ....++ .... ... .+.+++|.++.
T Consensus 171 -----gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (455)
T TIGR00892 171 -----GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLV 245 (455)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHH
Confidence 9999999999987766555555443222110 000000 000000 0000 111 24678888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHH
Q 040770 284 FFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGG 363 (521)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 363 (521)
..+..++.....+....+++.|+.+ .|++..+++++.++.+++.++++++.+++.||...+. ++...+..+.++.+
T Consensus 246 ~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 246 YLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP---HVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH---HHHHHHHHHHHHHH
Confidence 8887777777777777888999876 5999999999999999999999999999999743221 01122233333333
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 364 VFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+.+++....++.+.+++..++.|++.+...+...+++. .+|++.++++.|+++...++|.+++|.+.
T Consensus 322 l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~ 389 (455)
T TIGR00892 322 LTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence 43444445566777777788888888777777777765 45888999999999999999999999883
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=269.58 Aligned_cols=335 Identities=11% Similarity=0.058 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
+..+....+..........+.+|.+++|+|++.++.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 44556677777777778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 145 MSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
+++++|++.+++.|+++|++.+. .+....++.|++++++|++++++...+..+|..+++.++..+.... +
T Consensus 85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---------g 155 (382)
T PRK10091 85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF---------S 155 (382)
T ss_pred HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc---------c
Confidence 99999999999999999999996 6677788999999999999999998777788877776665554432 8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHH
Q 040770 224 WRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIIS 303 (521)
Q Consensus 224 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (521)
||+.|++.+++.++..+..++..|+.+++++ . +. +...+.+++++.+...+..++.....+...++++
T Consensus 156 wr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~-------~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (382)
T PRK10091 156 WRYTFLLIAVFNIAVLASIYFWVPDIRDEAK-------G----GL-REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIK 223 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcccc-------c----CH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877766655555554332110 0 01 1122356777777666555555445555556778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhh-ccCcHHHHHHHH
Q 040770 304 EFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG-RAESLPIAVVAM 382 (521)
Q Consensus 304 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 382 (521)
.++.+.+|+++.+.+++.+...++.++++++.+++.||+++|+ ....+..+.+++++++. ..++.+...+..
T Consensus 224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 296 (382)
T PRK10091 224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR-------IAAVTDFIIVLALLMLFFFGGMKTASLIFA 296 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888778999999999999999999999999999999999875 44444444444443332 233444444444
Q ss_pred HHHHhhhhhccccccc-ccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 383 VLFSMGTQAACGATFG-IVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 383 ~~~g~~~~~~~~~~~~-~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.+++.....+.... ...+. +++..+.+ ..+....+|..++|.+
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~ 343 (382)
T PRK10091 297 FICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYC 343 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHH
Confidence 5555554443333222 23333 44444443 3456677888888887
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=271.56 Aligned_cols=353 Identities=16% Similarity=0.128 Sum_probs=243.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhH-HHHH-----HHHHHHHhhhhHhhhhhcCCcHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNA-GVAS-----VSGSIFSRLIMGAVCDLIGPRYGTSFL 134 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~ 134 (521)
+++.....+++.++.++|+..+++..|.+.+|++.++.+.+.+ .+.. .++..+++++.|+++||+|||+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 3456777889999999999999999999999999988876544 3332 233347889999999999999999999
Q ss_pred HHHHHHHHHHHhhccCHHH--------HHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhH
Q 040770 135 LLLSAPAVFCMSFVSDAQG--------YIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLL 205 (521)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 205 (521)
.+++++++++++++++++. ++++|+++|++.+. .+....+++|++|+++|++++++.....++|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874 68899999999996 67778999999999999999999988888888888877
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHH
Q 040770 206 MPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFF 285 (521)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (521)
++.+...+.... .+..|||++|++..+.. ++.++.....||+++...++.+ .+..+.++...++++.+...
T Consensus 173 g~~l~~~~~~~~-~~~~gWr~~f~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 243 (434)
T PRK15075 173 GYLLNQWLSPAQ-MAEWGWRIPFLIGCLIV----PFIFLIRRSLEETEEFLARKHR----PSMREIFRSLAANWRIVLAG 243 (434)
T ss_pred HHHHHHhCCHHH-HhccchHHHHHHHHHHH----HHHHHHHHhcCCCHHHHHhhhc----cccccHHHHHHHhHHHHHHH
Confidence 777654331110 01339999998754332 2222222233443211111111 11112233444555555443
Q ss_pred -HHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHH
Q 040770 286 -VLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGV 364 (521)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 364 (521)
+..++....++....|.|.|+++.+|++..+.++...+..++++++.++.|+++||++||+ ....+..+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-------~~~~~~~~~~~ 316 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP-------VLIAFTVLAIL 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHH
Confidence 3333345556677889999999888999999999888899999999999999999999885 22222222211
Q ss_pred -HHHH---hhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhh-HHHHhhhhh
Q 040770 365 -FCVW---LGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGN-FGSGLTQLA 429 (521)
Q Consensus 365 -~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~g~~i~~~l 429 (521)
.+.. ....++........++.+++.+...+..+.+.. ..|++.|+++.|+.+..+. +++.++|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~ 387 (434)
T PRK15075 317 TAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAI 387 (434)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHH
Confidence 1111 111223323333334445555555555555555 4588999999999765555 457778776
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=269.27 Aligned_cols=355 Identities=11% Similarity=0.059 Sum_probs=242.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHH-HHhhc--CCCccchhhHH-----HHHHHHHHHHhhhhHhhhhhcCCcHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPI-IRDNL--NLTKTDVGNAG-----VASVSGSIFSRLIMGAVCDLIGPRYGTS 132 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 132 (521)
+++.+...++.++++++|...++...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 3456677788899999999988877765 55555 66665 45543 3455677899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCHH--------HHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHH
Q 040770 133 FLLLLSAPAVFCMSFVSDAQ--------GYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQ 203 (521)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 203 (521)
++.++++++++++++++|++ .++++|+++|++.|+ .+....++.|++|+++|++..+..+.+..+|..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 588899999999996 678889999999999999999998777777776665
Q ss_pred hHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhc-cCCCccccchhhHHhhhchhHHH
Q 040770 204 LLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQK-KGNVNKDKFSKVFWYGIKNYRTW 282 (521)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 282 (521)
.+...+...+.... ....+||++|++.+++.++. +++....||+++...++ +.++.+++ ....+..+++|+.+
T Consensus 179 ~~~~~l~~~~~~~~-~~~~gWr~~f~~~~~~~l~~----~~l~~~~~es~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 252 (438)
T PRK09952 179 GLVSLISMMTTDEQ-FLSWGWRIPFLFSIVLVLIA----LWVRNGMEESAEFEQQQHEQAAAKKR-IPVIEALLRHPGAF 252 (438)
T ss_pred HHHHHHHHhCCHHH-hhccChHHHHHHHHHHHHHH----HHHHHhCCCChhHHHHHhhccccccc-CCHHHHHHHchHHH
Confidence 55444433221110 01239999999887664332 22223344443322111 11111111 11223355677666
Q ss_pred HHHH-HHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHH
Q 040770 283 VFFV-LYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTL 361 (521)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (521)
...+ ..++.....+....|.|.|+.+.+|++......+..+.++..+++.++.|+++||++||+ ....+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~-------~~~~~~~~ 325 (438)
T PRK09952 253 LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR-------VYITGALI 325 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHHH
Confidence 6544 334445556677789999998888998876666666677788888999999999999985 33333333
Q ss_pred HHHHHHH--h-hcc-CcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhh-HHHHhhhhh
Q 040770 362 GGVFCVW--L-GRA-ESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGN-FGSGLTQLA 429 (521)
Q Consensus 362 ~~~~~~~--~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~-~g~~i~~~l 429 (521)
..++.+. . ... ++.+......++.+++.+...+..+++.+| .|++.|+++.|+.+..+. +++.++|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i 399 (438)
T PRK09952 326 GTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFI 399 (438)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 2222211 1 112 223333444555566666666767777766 488899999999766654 788888887
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=269.17 Aligned_cols=345 Identities=12% Similarity=-0.002 Sum_probs=252.6
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
+.+..++..+....+.+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 34445556667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~ 226 (521)
++|++.++++|+++|++.+. .+....++.|++++++|++++++......+|..+|+++++.+.... +||+
T Consensus 101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~---------gw~~ 171 (413)
T PRK15403 101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV---------HWKV 171 (413)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CHHH
Confidence 99999999999999999885 4466788999999999999999998888888888877776655432 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040770 227 AFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFM 306 (521)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (521)
.|++.+++.++..+..++..|+.+++ + +++...+...+.++..++||.++...+..++.....+.+..+.|.++
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp~~~~~---~---~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l 245 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMPETVKR---G---AVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVIL 245 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccc---c---CCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 99999988777665555554443221 1 01111223346678889999999988888877777777778889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 040770 307 YDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFS 386 (521)
Q Consensus 307 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (521)
++.+|+++.+.++.......+.+++..+.+.+.++..+++..........++..+..+... ...++.+..++..++++
T Consensus 246 ~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~--~~~~~~~~~~~~~~l~~ 323 (413)
T PRK15403 246 IDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL--LWPHVWLWSVLGTSLYA 323 (413)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH--HccccHHHHHHHHHHHH
Confidence 9988999999999887777788887777777654433322000000011111111111110 12233333456677778
Q ss_pred hhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 387 MGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.+...+......-.-....+|++.++.+.....+..+++..
T Consensus 324 ~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~ 366 (413)
T PRK15403 324 FGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEI 366 (413)
T ss_pred HHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8877777766643222223346888888888877766666665
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=275.90 Aligned_cols=347 Identities=17% Similarity=0.184 Sum_probs=264.0
Q ss_pred HHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhcc
Q 040770 70 VSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVS 149 (521)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 149 (521)
+.++..++++..+.+..|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 34667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHH-hHHHHHHHHHHHhCCCCCCCchHH
Q 040770 150 DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQ-LLMPLVFEVIKLAGATPFTAWRIA 227 (521)
Q Consensus 150 ~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~-~~~~~l~~~~~~~~~~~~~~wr~~ 227 (521)
+++.+++.|++.|++.+. .+...+++.|++|+++|++++++.+....+|..+++ +++..+.. ..+||+.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~ 152 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---------LYSWHWV 152 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---------cCCchhH
Confidence 999999999999999996 778889999999999999999999888888887777 34433322 2289999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCChhhhhc-----c----C---CCccccchhhHHhhhchhHHHHHHHHHHHHHHHH
Q 040770 228 FFIPGWLHVIMGILVLTLGQDLPDGNLGALQK-----K----G---NVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIE 295 (521)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (521)
|++.+++.++..++.+++.++.|++++.+..+ + . +++.+......+..+++|.++...+..++.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR 232 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99999888777777777766655432111000 0 0 0000111223456778899998888888888888
Q ss_pred HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc--cC
Q 040770 296 LTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR--AE 373 (521)
Q Consensus 296 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 373 (521)
..+..+.|.|+.+.+|+++.+.+.......++.+++.++.+++.||..+++ +............+.+..... ..
T Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (379)
T TIGR00881 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR----RGPLAVFFMALIIVSLLVYWLNPAA 308 (379)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHhcCcch
Confidence 888889999999888999999999999999999999999999999865432 111222222222222222222 22
Q ss_pred cHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 374 SLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+......++.|++.....+....+.. ..|++.|+++.|+.+....+|+.++|.+
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 365 (379)
T TIGR00881 309 NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365 (379)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhh
Confidence 3344444455555544444444444444 4588999999999999999999999987
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=270.15 Aligned_cols=345 Identities=13% Similarity=0.053 Sum_probs=273.3
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
++.+.++..+......+.+|.+..+++.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++..+
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777788889999999999999999999999999999999999999999999999999999999888888
Q ss_pred cc-----CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCC
Q 040770 148 VS-----DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPF 221 (521)
Q Consensus 148 ~~-----~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~ 221 (521)
++ +++.+++.|+++|++.+. .+...+++.|++|+++|++++++.+....+|..+++.+++.+....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------- 155 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-------- 155 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 77 999999999999999996 6788899999999999999999999999999988888877776654
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHh-h
Q 040770 222 TAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTN-N 300 (521)
Q Consensus 222 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (521)
+||+.|++.++..++..++.+++.. |++++++.++.+++..++..+.++..+++|.++...+..++......... .
T Consensus 156 -g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (365)
T TIGR00900 156 -GIKWAIWVDAVGFAISALLIVSVRI--PELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVA 232 (365)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhccc--ccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988776555444443322 22111111110001112233456677888888888777776666665555 7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc-HHHHH
Q 040770 301 IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES-LPIAV 379 (521)
Q Consensus 301 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 379 (521)
+.|.|..+.+|.++.+.+.+.....++.+++.++.+++.||.+||+ ....+..+.++.+.+....++ .+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (365)
T TIGR00900 233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA-------LMTGAIFVIGLAILVVGLTPPNFPLFL 305 (365)
T ss_pred HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-------HHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 7888888878999999999999999999999999999999998874 444444445555555555443 66677
Q ss_pred HHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 380 VAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+..++.|++.+...+...++.. ..|++.|+++.|+.+...+++..++|.+.
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887777766 45889999999999999999999998873
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=268.79 Aligned_cols=370 Identities=12% Similarity=0.066 Sum_probs=268.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
....+..+++.+++..+......+..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34456667788888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---hhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH---
Q 040770 141 AVFCM---SFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI--- 213 (521)
Q Consensus 141 ~~~~~---~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~--- 213 (521)
+.+++ +++++++.++++|+++|+|.+. .+....++.|+.++++|...+++.+....+|..+|+++++.+....
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~ 183 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99886 5689999999999999999996 6788888899877777777899999999999999988776544100
Q ss_pred -----------HH-hCCCC--CCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchh
Q 040770 214 -----------KL-AGATP--FTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNY 279 (521)
Q Consensus 214 -----------~~-~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (521)
.. .+... ..+||++|+....+..+..++.. .+..|+.+.++. .+++..+..+..++++++|
T Consensus 184 ~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~--~~~~p~~~~~~~---~~~~~~~~~~~~~~ll~~~ 258 (438)
T PRK10133 184 QSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM--LTKFPALQSDNH---SDAKQGSFSASLSRLARIR 258 (438)
T ss_pred cchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCCcccc---ccccccchhhhHHHHHhCc
Confidence 00 00000 02677777654433333222221 122233211110 1111122335567788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHH
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFM-YDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIF 358 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (521)
.++...+..++..........|++.|+ ++.+|+++.++++......++.++++++++++.||+++|+ .+..+
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~-------~l~~~ 331 (438)
T PRK10133 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-------VLAAY 331 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-------HHHHH
Confidence 988877777777777777778888885 5668999999999999999999999999999999999875 44444
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh-Hhcccchh
Q 040770 359 QTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA-FFSNSKFS 437 (521)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l-~~~~~~~~ 437 (521)
..+..+.+++....++. ..+..+.+.|++.+..+|..++...+..+++.+++.++... ..+|+.++|.+ ....+.++
T Consensus 332 ~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 332 ALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhcc
Confidence 44444444444444443 33556778899999999999988776555567788888764 44667777665 33334333
Q ss_pred -HHHHHHH
Q 040770 438 -TATGISL 444 (521)
Q Consensus 438 -~~~~~~~ 444 (521)
....+.+
T Consensus 410 ~~~~~~~v 417 (438)
T PRK10133 410 NIPTAELI 417 (438)
T ss_pred chHHHHHH
Confidence 3334433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=280.63 Aligned_cols=351 Identities=12% Similarity=0.036 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 64 TFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
.+..++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCC
Q 040770 144 CMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFT 222 (521)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~ 222 (521)
++++++|++.++++|+++|++.+. .+...+++.|++|+++|+++++++.....+|..+|+.+++.+.+ +.
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~ 153 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE---------NY 153 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc---------Cc
Confidence 999999999999999999999996 67888999999999999999999988888888777766655543 23
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhh-------------------ccCCCcc-cc---------------
Q 040770 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQ-------------------KKGNVNK-DK--------------- 267 (521)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------------~~~~~~~-~~--------------- 267 (521)
+||+.|++.+++.++..++.++..|+.++..+++.+ +.++... ..
T Consensus 154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (485)
T TIGR00711 154 HWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAII 233 (485)
T ss_pred CceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 999999999888777776666665543322111100 0000000 00
Q ss_pred ----------chhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 040770 268 ----------FSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGY 337 (521)
Q Consensus 268 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 337 (521)
....-.+.+++|.++...+..++.....+....++|.|+++.+|+++.++++......++.+++.++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 234 AFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR 313 (485)
T ss_pred HHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000124567888888888877777777788889999999989999999999999999999999999999
Q ss_pred HhhhhhcccccchhHHHHHHHHHHHHHHHHHhh--cc--CcHHHHHHHHHHHHhhhhhcccccccc-cccccccchhhhh
Q 040770 338 ASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG--RA--ESLPIAVVAMVLFSMGTQAACGATFGI-VPFVSRRSLGILS 412 (521)
Q Consensus 338 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ 412 (521)
+.||++||+ ....+..+.+++..++. .. .+.+......++.|++.+...+..... ...+|++.++++.
T Consensus 314 l~~r~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 314 MGDKIDPRK-------LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGS 386 (485)
T ss_pred HHhhcCcHH-------HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHH
Confidence 999999875 45555555555554443 11 234555566777888887766555444 4467899999999
Q ss_pred hhhhhhhhHHHHhhhhhH
Q 040770 413 GLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 413 g~~~~~~~~g~~i~~~l~ 430 (521)
|+.+....+|+.+++.+.
T Consensus 387 ~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALI 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998873
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=277.46 Aligned_cols=360 Identities=14% Similarity=0.209 Sum_probs=247.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+.+++.+..+++.+++..++.....+.+|.+.+++|++..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
+++.+++++++|++.+++.|++.|++.++ .+....++.|++|+++|++++++......+|..+++.+.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------ 169 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP------ 169 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999886 67888999999999999999999988888888777766655443
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHh--------------------hh-
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWY--------------------GI- 276 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~- 276 (521)
+.+||+.|++.++.. +..++. .+..|++++.+.+++.....++..+.... .+
T Consensus 170 ---~~~w~~~f~~~~~~~-~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (496)
T PRK03893 170 ---VWGWRALFFIGILPI-IFALWL---RKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFA 242 (496)
T ss_pred ---cCCHHHHHHHHHHHH-HHHHHH---HHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 239999998754432 222222 22334432211111110000000000000 00
Q ss_pred ------------------------------chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040770 277 ------------------------------KNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGM 326 (521)
Q Consensus 277 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~ 326 (521)
+.+......+..+......+....++|.|+++.+|++..+++++.+...+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~ 322 (496)
T PRK03893 243 GNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGF 322 (496)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 00000000000000011111234678999987789999999999999999
Q ss_pred HHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHhhhhhcccccccccc-cc
Q 040770 327 ANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA--ESLPIAVVAMVLFSMGTQAACGATFGIVP-FV 403 (521)
Q Consensus 327 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 403 (521)
+.+++.++.|+++||+++|+ ....+..+..+..++.... .+.+......++.++......+...++.. ..
T Consensus 323 ~~~~g~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (496)
T PRK03893 323 GAAVGCCVGGFLGDWLGTRK-------AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF 395 (496)
T ss_pred HHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence 99999999999999999875 3333443333333322222 22233323333333332233344444554 45
Q ss_pred cccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhH
Q 040770 404 SRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFST 438 (521)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~ 438 (521)
|++.+++++|+.+....+|+.++|.+. ...+.+++
T Consensus 396 ~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~ 431 (496)
T PRK03893 396 DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431 (496)
T ss_pred CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence 888999999999999999999999873 33343333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=262.06 Aligned_cols=342 Identities=14% Similarity=0.066 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
+.......+........+.+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444555555556666678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 145 MSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
+.++++++.+++.|+++|++.+. .+....++.|++|+++|++++++.+....+|..+++.++..+.. ..+
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---------~~g 155 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---------KFP 155 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CcC
Confidence 99999999999999999999886 66888999999999999999999988877777666665544432 228
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHH
Q 040770 224 WRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIIS 303 (521)
Q Consensus 224 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (521)
||+.|++.+++.++..++.++..++.+++++ + ++.+..+..++.+++++++...+...+.......+..+.|
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFILKETRPARA----P----AASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSP 227 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCccc----C----CccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 9999999998888777776666555432210 0 0111123455677888877766665555555555666778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 040770 304 EFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMV 383 (521)
Q Consensus 304 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (521)
.++.+.+|+++.+.+.+.+..+++.+++.++.+++.||+++|+ ....+..+..++.+.+....+.+.......
T Consensus 228 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK10473 228 VLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT-------LMLTSQVLFLAAGITLALSPSHAVSLFGIT 300 (392)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999875 444444444444444444333333333344
Q ss_pred HHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 384 LFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 384 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+.+.+.+...+........-.++..+.+.++......+|..+++.+.
T Consensus 301 l~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 301 LICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HHHHHHHHHhHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333322211111223446677776666667777777764
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=269.62 Aligned_cols=349 Identities=11% Similarity=-0.033 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 64 TFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
.++.++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 45667778888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCC
Q 040770 144 CMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFT 222 (521)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~ 222 (521)
+++++++++.+++.|+++|++.+. .+....++.|++|+++|+++.++.....++|..+|+.+++.+.+..
T Consensus 91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~--------- 161 (471)
T PRK10504 91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA--------- 161 (471)
T ss_pred HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc---------
Confidence 999999999999999999999996 6788899999999999999999998888888888877776665432
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhh------------------hccCC----------------------
Q 040770 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGAL------------------QKKGN---------------------- 262 (521)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------------------~~~~~---------------------- 262 (521)
+||+.|++...+..+..++.....++.+++.++.. .+.+.
T Consensus 162 gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
T PRK10504 162 SWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLY 241 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHH
Confidence 89999999888777666666665554433221100 00000
Q ss_pred ----CccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH
Q 040770 263 ----VNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYA 338 (521)
Q Consensus 263 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 338 (521)
...++. ..-.++++||.++...+..++..........+.|.|++..+|.++...++......++.+++.++.+++
T Consensus 242 ~~~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 242 LLHARNNNRA-LFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred HHHHhcCCCC-ccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 001246788888888777777776666666778888887789999999999988888888898999999
Q ss_pred hhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc---CcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhh
Q 040770 339 SDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA---ESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGL 414 (521)
Q Consensus 339 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 414 (521)
.||+++|+ .+..+..+.++..+++... .+.+......++.|++.+...+....+.. .+|++.++.++|+
T Consensus 321 ~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 393 (471)
T PRK10504 321 VNRFGYRR-------VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSL 393 (471)
T ss_pred HHHcCchH-------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHH
Confidence 99999885 4444444444443333322 22333334455666776666666666544 5688999999999
Q ss_pred hhhhhhHHHHhhhhh
Q 040770 415 TGAGGNFGSGLTQLA 429 (521)
Q Consensus 415 ~~~~~~~g~~i~~~l 429 (521)
.++...+|..+++.+
T Consensus 394 ~~~~~~~g~~ig~~i 408 (471)
T PRK10504 394 LSMIMQLSMSIGVTI 408 (471)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888876
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=261.43 Aligned_cols=340 Identities=13% Similarity=0.015 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
+....+...+.++....+.|.+|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 87 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG 87 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 33344445566667777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 145 MSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
++++++++.+++.|+++|++.+. .+...+++.|+++++++++..+.......+|..+++.+++.+.+.. +
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---------g 158 (401)
T PRK11043 88 MLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF---------G 158 (401)
T ss_pred HHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------C
Confidence 99999999999999999999885 5566788999999999999999887777778877776666554432 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHH
Q 040770 224 WRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIIS 303 (521)
Q Consensus 224 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (521)
||+.|++.+++.++..++.+++.++.++++ +++....+++.+++|+++...+...+....++.+..+.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (401)
T PRK11043 159 WQAIFATLFAITLLLILPTLRLKPSKKARK-----------QSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSP 227 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCccc-----------cchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999998887776665554432222110 011124567778888887766666666666666777888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc--cCcHHHHHHH
Q 040770 304 EFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR--AESLPIAVVA 381 (521)
Q Consensus 304 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 381 (521)
.++++ +|+++.+.++......++.+++.++.+++.||+++|+ ..........+..+.+..... .++.+...+.
T Consensus 228 ~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 228 FILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ----LLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 88765 6999999999888888889999999999999998764 112222222222222222221 2344444555
Q ss_pred HHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 382 MVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 382 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..+.+++.+..++.......+..++.+|++.|+.+..+..++..++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 350 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLL 350 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666544445789999999999988888888776
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=271.43 Aligned_cols=375 Identities=18% Similarity=0.190 Sum_probs=283.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcch-hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAA-PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLL 137 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 137 (521)
|....++..++..++..+.+...++ ..+..+.+|.+....+.+.+.++++++++++.+++|.+.||++..+.+....++
T Consensus 41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~ 120 (495)
T KOG2533|consen 41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL 120 (495)
T ss_pred HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH
Confidence 3445556666777777777765543 333446799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 040770 138 SAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA 216 (521)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~ 216 (521)
+++..++....+|++.+++.|++.|+.+++ +|....+++.|+.+++|++.++++.+..++|.++|++++..+.. ..
T Consensus 121 w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~---~~ 197 (495)
T KOG2533|consen 121 WGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK---LN 197 (495)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh---hc
Confidence 999998988899999999999999999995 99999999999999999999999999999999877776655433 22
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCh----h-------hhhccCCC--ccccchhhHHhhhchhHHHH
Q 040770 217 GATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNL----G-------ALQKKGNV--NKDKFSKVFWYGIKNYRTWV 283 (521)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~----~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 283 (521)
+.....||||.|++.|+++++.++++++++|+.|++.+ . +.++.... .++..+..+++.+++|.+|.
T Consensus 198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~ 277 (495)
T KOG2533|consen 198 GSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWP 277 (495)
T ss_pred CCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHH
Confidence 22345599999999999999999999999999998431 1 11111111 11134678899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhh----cccccchhHHHHHHHH
Q 040770 284 FFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAG----RLFGMRGRLWTLWIFQ 359 (521)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~----~~~~~~~~~~~~~~~~ 359 (521)
+.++.++.....+++.+|+|.|+.+..|++..++..+.+...++++++.+++|+++||++ +| ........
T Consensus 278 ~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~------~~~~~~~~ 351 (495)
T KOG2533|consen 278 FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR------LLFIVFLC 351 (495)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH------HHHHHHHH
Confidence 999999999999999999999999866799999999999999999999999999999953 32 22233333
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cc-cccchhhhhhhhhhhhhHHHHhhhhhHhccc--c
Q 040770 360 TLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FV-SRRSLGILSGLTGAGGNFGSGLTQLAFFSNS--K 435 (521)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~~~~~--~ 435 (521)
+...++...+......+......+....+.....+....... .. +...+-+..++.......+++++|.++...+ .
T Consensus 352 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~ 431 (495)
T KOG2533|consen 352 LYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR 431 (495)
T ss_pred HHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence 333344344433343444444444444444455555555544 23 4445555666666677788888888865533 4
Q ss_pred hhHHHHH
Q 040770 436 FSTATGI 442 (521)
Q Consensus 436 ~~~~~~~ 442 (521)
|.....+
T Consensus 432 y~~~~~f 438 (495)
T KOG2533|consen 432 YGWGAVF 438 (495)
T ss_pred hhhhhHH
Confidence 5555444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=268.43 Aligned_cols=339 Identities=10% Similarity=0.043 Sum_probs=258.4
Q ss_pred HHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh-
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF- 147 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~- 147 (521)
+...++..+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 102 (417)
T PRK10489 23 FIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN 102 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence 4445566666667778889999999999999999999999999999999999999999999999988888777665542
Q ss_pred ----ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCC
Q 040770 148 ----VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFT 222 (521)
Q Consensus 148 ----~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~ 222 (521)
.++++.+++.|+++|++.+. .++..+++.|++|+++|+++.++.....++|..+|+.+++.+....
T Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~--------- 173 (417)
T PRK10489 103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG--------- 173 (417)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---------
Confidence 57889999999999999885 6677889999999999999999998888899988888877776654
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH
Q 040770 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNII 302 (521)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (521)
+|++.|++.++..++..++. +..|+.++++ +++.+..++..+.++..+++|.++...+..++.. .......++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (417)
T PRK10489 174 GVAWNYGLAAAGTFITLLPL-LRLPALPPPP-----QPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLY 246 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HhCCCCCCCC-----cccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhh
Confidence 89999998877766554443 3334332211 1111112223344566778887766555544332 234566788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHH
Q 040770 303 SEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAM 382 (521)
Q Consensus 303 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (521)
|.|+.+.+|.++...+++.+...++.+++.++.+++.||.++++ .+..+.++.++.++++...++.+...+..
T Consensus 247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (417)
T PRK10489 247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL-------LMLLSTLGSFLAVGLFGLMPMWILAVLCL 319 (417)
T ss_pred HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch-------HHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99998878999999999999999999999999999999865543 44445555555555555666666666777
Q ss_pred HHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 383 VLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
++.|++.+...+...+++.+ .|++.||+++|+.+...++|..++|.+.
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 77888777666666677664 5888999999999999999999999873
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=268.44 Aligned_cols=355 Identities=14% Similarity=0.157 Sum_probs=267.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+.+++.+...++.++...++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 44566666667777777788888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
+++.++..++++++.+++.|++.|++.+. .+...+++.|++|+++|++++++......+|..+++.+++.+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---- 168 (398)
T TIGR00895 93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF---- 168 (398)
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc----
Confidence 99999999999999999999999999985 7788999999999999999999998888888888877666554432
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhh-hhc--------------------cCCCccccchhh----H
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGA-LQK--------------------KGNVNKDKFSKV----F 272 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~--------------------~~~~~~~~~~~~----~ 272 (521)
+||+.|++.+++.++..++.+++.|+.|+...++ .++ .+.+.+++..+. +
T Consensus 169 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (398)
T TIGR00895 169 -----GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKAL 243 (398)
T ss_pred -----cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHH
Confidence 8999999987776766666666666544311000 000 000000111111 1
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhH
Q 040770 273 WYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRL 352 (521)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 352 (521)
+.....+..+...+..++..........++| ++.+.+|.++.+.+.......++.+++.++.+++.||+++|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 316 (398)
T TIGR00895 244 FQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV------ 316 (398)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH------
Confidence 1222233444444555555556666677788 444557999999999999999999999999999999999863
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 353 WTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.............++.....+.+..++..++.|++.+...+...++..+ .|++.|+++.|+.+....+|..++|.+.
T Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 317 -TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2222222222222222224466666777788888888888888887665 4889999999999999999999999873
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=261.20 Aligned_cols=349 Identities=11% Similarity=0.024 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 64 TFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
.+...+++.+............++.+.+|+|+++.+.+++.+.+.+++.++++++|+++||+|||+++..+.++++++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~ 93 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA 93 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 34444555555555544444566777789999999999999999999999999999999999999999999999998877
Q ss_pred HHh---h-ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhh-HHHHhHHHHHHHHHHHhC
Q 040770 144 CMS---F-VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGG-GVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 144 ~~~---~-~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~ig~~~~~~l~~~~~~~~ 217 (521)
++. + .++++.+++.|+++|++.+. .+.....+.+++|+++|++++|+.+...++|. .+++.++..+...
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~----- 168 (402)
T TIGR00897 94 AFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA----- 168 (402)
T ss_pred HHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 653 3 35889999999999999885 55677888999999999999999998888886 4566555444332
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
.||+..++......++..++.+++.++.+++++++ ++++.++..+.++..+++|.++...+..++.....+.
T Consensus 169 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (402)
T TIGR00897 169 ----FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ----TREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFG 240 (402)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc----CCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 27666555544443444444455555543321111 1111122234466788999999888887777777788
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhh--ccCcH
Q 040770 298 TNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG--RAESL 375 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 375 (521)
..++.|.|+++ +|+++.+.+.+.....++..++.++.|+++||++||+.. .........+..+.+.... ..++.
T Consensus 241 ~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~---~~~~~l~~~~~~~~l~~~~~~~~~~~ 316 (402)
T TIGR00897 241 FAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV---RWFGGVGCGIFTLALYYIPQHFGHSF 316 (402)
T ss_pred HHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH---HHHHHHHHHHHHHHHHHHHHccCCcH
Confidence 88899988866 799999999988889999999999999999999987511 0011111111111111111 12345
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 376 PIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+..++..++.|++.+...+. .....+.++++++++.|+.+....+++.++|.+.
T Consensus 317 ~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~ 370 (402)
T TIGR00897 317 AVALIIAIALGIFLAGYVPL-AAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIA 370 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777776654443 3344567778999999999999999999999873
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=272.24 Aligned_cols=362 Identities=11% Similarity=0.037 Sum_probs=240.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhc--------CCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNL--------NLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYG 130 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 130 (521)
+.+.+...+..++.+...++...+++..|.+++++ +++..+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34455666677788888889888998889998887 8888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc------------cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhh
Q 040770 131 TSFLLLLSAPAVFCMSFV------------SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDM 197 (521)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 197 (521)
++++.++++++.++++++ ++++.++++|+++|++.|+ .+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 2256788999999999996 778999999999999999999999887777
Q ss_pred hhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCC-----Chhhhh----c-cCCCcccc
Q 040770 198 GGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDG-----NLGALQ----K-KGNVNKDK 267 (521)
Q Consensus 198 G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~----~-~~~~~~~~ 267 (521)
|..++++++..+....... ..+..+||+.|++.+++.++..+. .+++||.|+. +.++.+ + .+..+.+.
T Consensus 168 G~~~~~~~~~~~~~~~~~~-~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDAS-WLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245 (479)
T ss_pred HHHHHHHHHHHHhccCccc-ccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHH
Confidence 7766655444332211000 012348999999988887766544 4555555421 000000 0 00000000
Q ss_pred chhhHHhhhc-----hhHHHHH---HHHH------HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh
Q 040770 268 FSKVFWYGIK-----NYRTWVF---FVLY------GFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARP 333 (521)
Q Consensus 268 ~~~~~~~~~~-----~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~ 333 (521)
..+..+...+ .+..+.. .+.. +......+...++.|.++.+ .|.+.....+.....++..+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~ 324 (479)
T PRK10077 246 ALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTV 324 (479)
T ss_pred HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHH
Confidence 0111111111 0111100 0010 00111122233445665544 588877777777788889999999
Q ss_pred hhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc---cCc-HHHHHHHHHHHHhhhhhc-ccccccccccc-cccc
Q 040770 334 FGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR---AES-LPIAVVAMVLFSMGTQAA-CGATFGIVPFV-SRRS 407 (521)
Q Consensus 334 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~~ 407 (521)
++++++||++||+ .+..+.++.+++.+++.. .+. ......++++++++.+.. .+..+.++.+. |++.
T Consensus 325 ~~g~l~dr~g~r~-------~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 397 (479)
T PRK10077 325 LAIMTVDKFGRKP-------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 397 (479)
T ss_pred HHHHHHHHhcChH-------HHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence 9999999999885 444444444444433321 111 122333444455444433 35556666655 8899
Q ss_pred hhhhhhhhhhhhhHHHHhhhhhH
Q 040770 408 LGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 408 ~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
|+++.|+.+..++++.++++.++
T Consensus 398 r~~~~g~~~~~~~~g~~~~~~~~ 420 (479)
T PRK10077 398 RGKALAIAVAAQWIANYFVSWTF 420 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887764
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=266.64 Aligned_cols=357 Identities=18% Similarity=0.224 Sum_probs=253.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
+++.+....+.+...+.++..+....|.+++ +|+++++.+++.+++.++..++.++.|+++||+|||+++.++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3455566666777777777777777888876 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc----cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHH
Q 040770 141 AVFCMSFV----SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKL 215 (521)
Q Consensus 141 ~~~~~~~~----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 215 (521)
+.++.++. ++++.+.+.|++.|++.+. .++....+.|++|+++|++++++++...++|..+++.+.+.....
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--- 180 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--- 180 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH---
Confidence 98887764 5678888999999999985 677888999999999999999999888888887776554432221
Q ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChh-h---hhcc-----CCCccc--cchhhH-HhhhchhHHHH
Q 040770 216 AGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLG-A---LQKK-----GNVNKD--KFSKVF-WYGIKNYRTWV 283 (521)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~-~---~~~~-----~~~~~~--~~~~~~-~~~~~~~~~~~ 283 (521)
+.+||+.|++.++++++..++.+++.++.|+++.. + .+++ .++.+. +..+.+ +..++++.+|.
T Consensus 181 -----~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (438)
T TIGR00712 181 -----FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWY 255 (438)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHH
Confidence 11899999999998888777777777776543210 0 0000 000001 111111 23678888998
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHH
Q 040770 284 FFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGG 363 (521)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 363 (521)
..+..++.+...+...+++|.|+++.+|+++.++++...+..+.++++++++|+++||+++++.. ........+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~----~~~~~~~~~~~ 331 (438)
T TIGR00712 256 IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG----ATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----HHHHHHHHHHH
Confidence 88877777777778888999999988899999999999999999999999999999999654311 11111111111
Q ss_pred HHHHHhhc--cCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHH-HhhhhhH
Q 040770 364 VFCVWLGR--AESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGS-GLTQLAF 430 (521)
Q Consensus 364 ~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~-~i~~~l~ 430 (521)
+..+.+.. ..+.+......++.|++............. ..|++.++++.|+.+...++++ +++|.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~ 402 (438)
T TIGR00712 332 IAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 402 (438)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence 11221111 223333333334444432221111122333 4588999999999999888875 5788873
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=259.12 Aligned_cols=332 Identities=14% Similarity=0.078 Sum_probs=250.4
Q ss_pred hhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 040770 78 STFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAA 157 (521)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (521)
....+.|.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 040770 158 RFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHV 236 (521)
Q Consensus 158 r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~ 236 (521)
|+++|++.+. .+...+++.|++|+++|++++++.+....+|..+++.+++.+.... +||+.|++.+++.+
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~ 156 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF---------SWHAIFWVLALAAI 156 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------ChHHHHHHHHHHHH
Confidence 9999999886 6788899999999999999999998888888888877766665543 89999999988877
Q ss_pred HHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH
Q 040770 237 IMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHT 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~ 316 (521)
+..++..+..++.++++++ + +.+.++..+.+++.++++.++...+..++.+...+.+..+.|.++.+.+|+++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 231 (377)
T PRK11102 157 LAAALVFFFIPETLPKERR----Q-PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN 231 (377)
T ss_pred HHHHHHHHhCCccCccccc----C-CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence 7766666665554322110 0 1111112345667788888888777777666666777777888888888999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHH---HHHHHHHhhcc-CcHHHHHHHHHHHHhhhhhc
Q 040770 317 AGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTL---GGVFCVWLGRA-ESLPIAVVAMVLFSMGTQAA 392 (521)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 392 (521)
.+.+.....++.+++.++.+++.||+++|+ ....+..+ .++.+...... .+.+...+...+.+.+.+..
T Consensus 232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T PRK11102 232 FGYYFALNIVFLFVMTIINSRFVRRVGALN-------MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMI 304 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875 33333222 22222222222 23333333343444444444
Q ss_pred ccccccccccccccchhhhhhhhhhhhh-HHHHhhhhhH
Q 040770 393 CGATFGIVPFVSRRSLGILSGLTGAGGN-FGSGLTQLAF 430 (521)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~i~~~l~ 430 (521)
.+.......+..++.++++.++.+.... +|..+++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 305 SSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred hHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555556889999999877654 6666677663
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=264.12 Aligned_cols=331 Identities=15% Similarity=0.070 Sum_probs=269.7
Q ss_pred HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHhhhhh
Q 040770 90 RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV--SDAQGYIAARFMIGFCLAT 167 (521)
Q Consensus 90 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~ 167 (521)
..+++++..+.+++.+.+++|+.+++++.|+++||+|.|+++..+.++.++++++..++ .+++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 45789999999999999999999999999999999999999999999999999998876 4566789999999999996
Q ss_pred -hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 040770 168 -FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLG 246 (521)
Q Consensus 168 -~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 246 (521)
+++...+.+.|.|++||++..++..++..+|.+++..+++.+... ..||+++|++.++++++..++++++.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--------~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--------SLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999988888887777666666554 12999999999999999999999999
Q ss_pred ccCCCCChhhh-------hccCC--CccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH
Q 040770 247 QDLPDGNLGAL-------QKKGN--VNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTA 317 (521)
Q Consensus 247 ~~~p~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~ 317 (521)
.|.|++++.-. ++.+. ..+++..-.++.+++++.+|.+.+..++.....+.+..++|.|+.+.+|++..+.
T Consensus 217 ~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~ 296 (466)
T KOG2532|consen 217 SDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET 296 (466)
T ss_pred cCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh
Confidence 99998754311 11111 1111123568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhccccc---chhHHHHHHHHHHHHHHHHHhhccCc--HHHHHHHHHHHHhhhhhc
Q 040770 318 GTIAATFGMANIFARPFGGYASDVAGRLFGM---RGRLWTLWIFQTLGGVFCVWLGRAES--LPIAVVAMVLFSMGTQAA 392 (521)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 392 (521)
|++.++..+...+..+++|.++||+.+| .. ..++..-.++....++.++.+.+.++ .+..++++.+.....+..
T Consensus 297 G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~ 375 (466)
T KOG2532|consen 297 GFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFN 375 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999886 32 24455666777777777777777663 322333333322222333
Q ss_pred ccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 393 CGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+..+....+..|++.+..+|+.+....+.++++|.+
T Consensus 376 ~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 376 ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333445488999999999999999999999998
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=257.55 Aligned_cols=347 Identities=15% Similarity=0.099 Sum_probs=263.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH
Q 040770 60 PHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA 139 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 139 (521)
+.++.+.+.....++..+....+.+.+|.+.+++|+++.+.+++.+.+.+++.++++++|+++||+|||+++.++.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~ 84 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI 84 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 34566666666666777777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCC
Q 040770 140 PAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGA 218 (521)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~ 218 (521)
++.+++.++++++.+++.|++.|++.+. .+....++.|.+++++|++++++...+..+|..+++.+++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------ 158 (394)
T PRK11652 85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL------ 158 (394)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 9999999999999999999999999885 566778889999999999999998766666666666555544332
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 040770 219 TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTT 298 (521)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (521)
.+||+.|++.+++.++..++..+..||.+++++ ++++..+.++..+++|+++...+..+........+
T Consensus 159 ---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T PRK11652 159 ---FGWRACYLFLLLLGAGVTFSMARWMPETRPADA---------RRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVF 226 (394)
T ss_pred ---cChHHHHHHHHHHHHHHHHHHHHhCCccCcccc---------chhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 289999999988777666655555554332211 01113356677888888877666655555555555
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc--cCcHH
Q 040770 299 NNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR--AESLP 376 (521)
Q Consensus 299 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 376 (521)
..+.+.++.+.+|+++.+.+++.....++.+++.++.+++.||.+++. .....+..+..+.+..... ..+.+
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLMWIPGWFGVMNVW 300 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccccHH
Confidence 667788888888999999999888888888888888888888887431 2222222222222222222 23445
Q ss_pred HHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
......++.+++.+...+...++..+..++.+|++.++.+....+|+.+++.+.
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 301 TLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888887778777776655567889999999999999999999873
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=260.06 Aligned_cols=335 Identities=15% Similarity=0.082 Sum_probs=249.4
Q ss_pred HHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHH-HHHHHHHHHHHHhh
Q 040770 70 VSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSF-LLLLSAPAVFCMSF 147 (521)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~ 147 (521)
+.+++..+......+.+|. +++++|.|..++|++.+++.+...+.+++.|+++||+||||.++. +.++..++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4466677777777788886 568899999999999999999999999999999999999887654 56666778888899
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhH--HHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCc
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLV--NGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAW 224 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~w 224 (521)
+++++.+++.|+++|.+.+. .+...+++.|+.++++|++. .++...+.++|..+|+.+++.+.+.. +|
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---------~~ 154 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF---------GF 154 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc---------cc
Confidence 99999999999999887775 66677888898887777654 57777777788888877776665533 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040770 225 RIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISE 304 (521)
Q Consensus 225 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (521)
|+.|++.+++.++..++.++++||.|+.+.++ . ++ .+.+..++++.++...+..++.+........++|.
T Consensus 155 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T TIGR00899 155 TVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA---L---TR----LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPL 224 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCcccc---c---Cc----chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999887777777767666654432111 0 01 12334566777766655555555545555667888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 040770 305 FMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVL 384 (521)
Q Consensus 305 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (521)
|+.+.+|.++.+.+.+.....+..+++.++.|++.||+++|+ ....+.++..+.+......++.+...+..++
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-------LMLLAALAGVAFYTGLAADNSLWALLMLQLL 297 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888999999998887777778888999999999999885 3333444444443344444556655666667
Q ss_pred HHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 385 FSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.+++.+...+....+..+..+++++++.++.+...++|..++|.+.
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666666666666566778999999999999999999873
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-31 Score=265.86 Aligned_cols=365 Identities=15% Similarity=0.074 Sum_probs=242.1
Q ss_pred cCchhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhc-----CCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHH
Q 040770 57 FAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNL-----NLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGT 131 (521)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 131 (521)
..+.+++.+.++.++.+..+++....+...|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~ 89 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY 89 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3456677777888888999999999888888887653 34556789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC------HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHh
Q 040770 132 SFLLLLSAPAVFCMSFVSD------AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQL 204 (521)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 204 (521)
.++.+++.++.++++++++ ++.++++|+++|++.|. .+....+++|++|+++|++++++.+....+|..+++.
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 78999999999999996 7789999999999999999999999998999988887
Q ss_pred HHHHHHHHHHHh--CC------------CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCC----Chh-h-hh------
Q 040770 205 LMPLVFEVIKLA--GA------------TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDG----NLG-A-LQ------ 258 (521)
Q Consensus 205 ~~~~l~~~~~~~--~~------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~----~~~-~-~~------ 258 (521)
++..+....... .. ....+||++|.+.++++++..+. .+.+||.|+- .++ + .+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 776554432110 00 01137999998887776654443 4455555531 010 0 00
Q ss_pred -c-c-C--CCc-------cccchhhHHhhhch---hHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH-
Q 040770 259 -K-K-G--NVN-------KDKFSKVFWYGIKN---YRT----WVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAG- 318 (521)
Q Consensus 259 -~-~-~--~~~-------~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~- 318 (521)
+ + . .++ ++.....+++++++ ++. +......+.....+++...+.|.++.+ .|++....+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~ 327 (502)
T TIGR00887 249 LQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATN 327 (502)
T ss_pred hccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccch
Confidence 0 0 0 000 00011123444432 122 112222333334455666778888865 477643211
Q ss_pred ----------H-HHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC---cHHHHHHHHHH
Q 040770 319 ----------T-IAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE---SLPIAVVAMVL 384 (521)
Q Consensus 319 ----------~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 384 (521)
. ...+..++.+++.++.++++||+|||+ .+..+..+.+++++++.... +........++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~-------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 400 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP-------IQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVL 400 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh-------HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 1 223345566778899999999999985 44444444333333322211 11111111222
Q ss_pred HH-hhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 385 FS-MGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 385 ~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.. ++.....+..+.+..|+ |++.|+++.|+.+.+++++++++|.++
T Consensus 401 ~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~ 448 (502)
T TIGR00887 401 AQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF 448 (502)
T ss_pred HHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 22 22223345556665655 889999999999999999999999874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=257.82 Aligned_cols=352 Identities=14% Similarity=0.080 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV 142 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 142 (521)
+.+..++.+.++..+......+.+|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCC
Q 040770 143 FCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPF 221 (521)
Q Consensus 143 ~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~ 221 (521)
+++++++|++.++++|+++|++.+. .+.....+.+..++++|+++++++....++|..+|+.+++.+....
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 157 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-------- 157 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------
Confidence 9999999999999999999999986 5667778888899999999999998888888887777666554321
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhh
Q 040770 222 TAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNI 301 (521)
Q Consensus 222 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (521)
.|.. ++..+...... +..++ .+..|+++ + + ++. ++.++.+++|.++......+.....+.....+
T Consensus 158 -~~~~-~~~~~~~~~~~-~~~~~-~~~~~~~~-~---~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (381)
T PRK03633 158 -MSVL-PWVTGLVLAAI-LPLLF-TRILNQQA-E---N---HDS----TSIWPMLKLRQARLGVNGCIISGIVLGSLYGL 222 (381)
T ss_pred -cchH-HHHHHHHHHHH-HHHHH-hcccCCCC-C---C---CCC----CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22222221211 11122 12212111 0 0 011 23445667777775544444333444555677
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHH
Q 040770 302 ISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVA 381 (521)
Q Consensus 302 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (521)
+|.|+++ .|.++...+.+.+...++.+++++..|++.||+++|+ .+..+..+..++.+... .. ......
T Consensus 223 lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-------~l~~~~~~~~~~~~~~~--~~-~~~~~~ 291 (381)
T PRK03633 223 MPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-------VLRVQVFVVILGSIAML--SQ-AAMAPA 291 (381)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-------HHHHHHHHHHHHHHHHh--hh-HHHHHH
Confidence 8988877 4999999999999999999999999999999999875 44444444444333332 11 222334
Q ss_pred HHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHHHHHH
Q 040770 382 MVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISLMGAL 448 (521)
Q Consensus 382 ~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~~~~~ 448 (521)
..+.+++.....|...+.+. ..|++.++...+..+...++|..++|.+. ...+.++....+.+.+.+
T Consensus 292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~ 360 (381)
T PRK03633 292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASV 360 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 45556655556676666654 45677777788888888889999999873 333444444444443333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=258.30 Aligned_cols=363 Identities=15% Similarity=0.081 Sum_probs=269.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+..++.+.++++..+++.+|.+.+....+.+++.||++++..|++.+.+.+.+.++++++|+++|||.||+++.+|..+|
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
.++.+++++++.||+++++|.+.|+|.+. .+.++.+++|.+|..+|++++++++....+|..+|.+.+..++...
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---- 184 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---- 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc----
Confidence 99999999999999999999999999996 6799999999999999999999999999999999988887776543
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccC--CCccccchhhHHhhhchhHHHHHHHHHHHHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKG--NVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIE 295 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (521)
. .|||.|+..++++++++++.+++.+|+++..+++.+.+. ..+..+.+++++...+++.+....+.+....+..
T Consensus 185 --~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~ 260 (493)
T KOG1330|consen 185 --F--WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI 260 (493)
T ss_pred --c--ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence 1 399999999999999999999987774433322222211 1234455788888888888877777777666666
Q ss_pred HHHhhhHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHH----HHHHHHHHHHHHH
Q 040770 296 LTTNNIISEFMY---DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTL----WIFQTLGGVFCVW 368 (521)
Q Consensus 296 ~~~~~~~~~~l~---~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 368 (521)
.++..|.|.+.. +..|++.....++..+...++.+|.+++|.++||+.++.....+...- ..+..++...+.+
T Consensus 261 Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~ 340 (493)
T KOG1330|consen 261 GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL 340 (493)
T ss_pred cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence 666666666544 333556666667778888999999999999999977644331111111 1122222222222
Q ss_pred hhc-cCcHHHHHHHHHHHHhhhhhccc-cccccc-ccccccchhhhhhhhhhhhhH-HHHhhhhh
Q 040770 369 LGR-AESLPIAVVAMVLFSMGTQAACG-ATFGIV-PFVSRRSLGILSGLTGAGGNF-GSGLTQLA 429 (521)
Q Consensus 369 ~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~~~~~-g~~i~~~l 429 (521)
... ..+.....+.++++|........ ...-+. .-+|++.|.++.++...+..+ |.+-+|++
T Consensus 341 ~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~i 405 (493)
T KOG1330|consen 341 FPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYI 405 (493)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcce
Confidence 222 22222333334444443332222 222233 345999999999998877664 45555534
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=259.83 Aligned_cols=356 Identities=13% Similarity=0.069 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccc-----hhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTD-----VGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA 139 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 139 (521)
...++++.++..+......+.+|.+.+++|++..+ .|++.+++.++..++.+++|+++||+|||+++..+.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 44556777778888888889999999999998665 4889999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCC
Q 040770 140 PAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGAT 219 (521)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~ 219 (521)
++.+++.++++++.+++.|++.|++.+..+....++.+++|+++|++++++......+|..+++.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------ 169 (408)
T PRK09874 96 IVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------ 169 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 99999999999999999999999986656677788999999999999999998888888888887777665543
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHH-HHHHHHHHHHH
Q 040770 220 PFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVL-YGFSMGIELTT 298 (521)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 298 (521)
+||+.|++.+++.++..+..+++.++.+++.+++ + +.+ .++..+.+++++++...+. ...........
T Consensus 170 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
T PRK09874 170 ---GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK---E----MLH-MREVVTSLKNPKLVLSLFVTTLIIQVATGSI 238 (408)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHhccCcccccch---h----hhH-HHHHHHhCcCCchHHHHHHHHHHHHHHHHHH
Confidence 8999999999887777776666655543211110 0 001 1233445667776553333 23333334445
Q ss_pred hhhHHHHHHHhcCCCH---HHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcH
Q 040770 299 NNIISEFMYDRFNLKL---HTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESL 375 (521)
Q Consensus 299 ~~~~~~~l~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (521)
..+++.|..+..+... ...+.+..+.+++.+++.+..|++.||++||+ .+..+..+..+..+.....++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-------ILITALIFSVLLLIPMSFVQTP 311 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHHHHHHhccH
Confidence 5677777776533322 13455666777888899999999999999885 4444444454444444445566
Q ss_pred HHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHH
Q 040770 376 PIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISL 444 (521)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~ 444 (521)
+..++..++.|++.+...+...+... ..+++.+|+.+++.+....+|..++|.+. ...+.+++...+.+
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~ 382 (408)
T PRK09874 312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLV 382 (408)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHH
Confidence 66667777888888777777666655 45788899999999999999999999983 33333333334433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=259.98 Aligned_cols=333 Identities=16% Similarity=0.050 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 62 MRTFHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
++.+..+.+..++..++.....+.+|. +.+++|.|..+.|++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 344666788888888888888888887 6789999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhc---c-----CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 141 AVFCMSFV---S-----DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 141 ~~~~~~~~---~-----~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
+.+++.++ + +++.+++.|+++|++.+. .+....++.|++|+++|++++++.+....+|..+|+.+++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 77665543 2 567899999999999996 66778889999999999999999988888888888877766655
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHH
Q 040770 212 VIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFS 291 (521)
Q Consensus 212 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (521)
.. +||+.+++.+++.++.. ++.++.|++++.+ +++.+ .++.++ +++.......+.
T Consensus 174 ~~---------g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~----~~~~~~--~~~~~~~~~~~~ 228 (399)
T PRK05122 174 WG---------GLAGLGLLIMLLALLGL----LLARPRPAVPPVK------GERLP----FRRVLG--RVWPYGMGLALA 228 (399)
T ss_pred cc---------cHHHHHHHHHHHHHHHH----HHHhcCCCCCCCC------ccchh----HHHHHH--HHHHHHHHHHHH
Confidence 33 89998887665543322 2222223321110 01111 222222 122222222233
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 040770 292 MGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR 371 (521)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (521)
...+.....+++.|+.+. |.+ ..+.......++.+++.++.+++.||+++|+ ....+..+.+++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~ 298 (399)
T PRK05122 229 SIGFGTIATFITLYYAAR-GWD--GAALALTLFGVAFVGARLLFGNLINRLGGLR-------VAIVSLLVEILGLLLLWL 298 (399)
T ss_pred HHHHHHHHHHHHHHHHHc-ccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHHH
Confidence 334445556778887654 553 4456667788888999999999999999874 444555555555555555
Q ss_pred cCcHHHHHHHHHHHHhhhhhccccccccc-ccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 372 AESLPIAVVAMVLFSMGTQAACGATFGIV-PFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.++.+..++..++.|++.+...+...... ...|++.+|++.|+++....+|..+++.+
T Consensus 299 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 357 (399)
T PRK05122 299 APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL 357 (399)
T ss_pred hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777888888877776655543 35688999999999999999998888776
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=259.06 Aligned_cols=350 Identities=12% Similarity=-0.033 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
+..++++.++..+.........+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.++++++
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 33456777777775555555666778999999999999999999999999999999999999999999999999999988
Q ss_pred HhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 145 MSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
++++++. ++.|+++|++.+. .++..+++.|++|+++|++++++.+....+|..+||.+++.+... .
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----------~ 151 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----------H 151 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 8777664 7889999999996 778899999999999999999999988888888888877776653 4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHH
Q 040770 224 WRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIIS 303 (521)
Q Consensus 224 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (521)
|+..+.+.+...++. ++..+.+|+.|++++++ +.+.....++.++..+.++++|.+........+.+.........++
T Consensus 152 ~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK11195 152 AEAALAVCALIYLLA-ALFNLFIPRLGARRPGQ-SWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVL 229 (393)
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCCccccccc-CCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766554333 33344444433221100 0000000112233455667787776555554444444555556677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 040770 304 EFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMV 383 (521)
Q Consensus 304 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (521)
.|+++.+|.++.+.|++.+..+++.+++.++.+++.||.++++ .+..+.. .++..+.+...++.+...+..+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-------~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 301 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-------VLPAGIL-MGLVVLLMALQHSLLPAYPLLI 301 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-------hHHHHHH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888999999999999999999999999999999877663 3333332 2333333344445555566666
Q ss_pred HHHhhhhhccccccccccccccc-c-hhhhhhhhhhhhhHHHHhhhhhHhcccchh
Q 040770 384 LFSMGTQAACGATFGIVPFVSRR-S-LGILSGLTGAGGNFGSGLTQLAFFSNSKFS 437 (521)
Q Consensus 384 ~~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~~~~~g~~i~~~l~~~~~~~~ 437 (521)
+.|++.+...+...+...+.+++ . +|++.++.+...+++..++..++...+.++
T Consensus 302 ~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 357 (393)
T PRK11195 302 LIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLG 357 (393)
T ss_pred HHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence 78887777666666666655544 3 699999999999999999888754444333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=249.48 Aligned_cols=347 Identities=13% Similarity=0.103 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
+..++..+++.++......+++|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 45667778888888888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhh---ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh-C--
Q 040770 145 MSF---VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA-G-- 217 (521)
Q Consensus 145 ~~~---~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~-~-- 217 (521)
+.. .++++.+++.|++.|+|.|. .+....++.+..|+++|++.+++.+...++|..+++.+++.+....... +
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 644 46899999999999999996 6788889999999999999999999999999999998877664321000 0
Q ss_pred --------------CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHH
Q 040770 218 --------------ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWV 283 (521)
Q Consensus 218 --------------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (521)
..+..+||++|++.+++.++..++..+ .+ .|+.++++ + ++.+..+..++.+++|+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~-~~-~p~~~~~~--~----~~~~~~~~~~~~~~~~~~~~ 236 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIML-TK-MPALNHSD--A----KQISFSASLSRLARIRHYRE 236 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCccc--c----ccccchhhHHHHHhChhHHH
Confidence 001127999999998876665544432 22 33321111 0 11112234557788999988
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHH
Q 040770 284 FFVLYGFSMGIELTTNNIISEFMYDRF-NLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLG 362 (521)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 362 (521)
..+..++..+.+....++++.|..+.. +.+....+...+....+..+|+++++++.||+++|+ .+.++.++.
T Consensus 237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-------~l~i~~~~~ 309 (410)
T TIGR00885 237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-------VLMAYAIIG 309 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-------HHHHHHHHH
Confidence 888888887788778889999987632 445555555666667888999999999999998875 555555655
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 363 GVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+++++....++.. ....+.+.+++.+..+|..++... .++++....+.++.... +|+.+.|.+
T Consensus 310 ~~~~ll~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l 374 (410)
T TIGR00885 310 MALCLGSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPL 374 (410)
T ss_pred HHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHH
Confidence 55555555555533 356777788888888898888865 45655544444444433 889988887
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-30 Score=251.63 Aligned_cols=346 Identities=15% Similarity=0.104 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH
Q 040770 64 TFHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV 142 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 142 (521)
.+..++++.++.++......+.+|. +.+++|+|..++|++.+++.+++.++++++|+++||+|||++++.+.++..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG 95 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 3455566667777777777788886 578999999999999999999999999999999999999999999988877665
Q ss_pred HHH---hh-----ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 143 FCM---SF-----VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 143 ~~~---~~-----~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+.. ++ .++++.++++|+++|++.+. .+...+++.|++|+++|++++++.+.+.+.|..+++.+++.+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (392)
T PRK12382 96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF 175 (392)
T ss_pred HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 432 22 35789999999999999996 6677889999999999999999998888888877777766655432
Q ss_pred HHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHH
Q 040770 214 KLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMG 293 (521)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (521)
|||+.+.+..+..++. +.+.++.|+.++++ + ++.+.++..+ .++...+..++...
T Consensus 176 ---------g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~~~~~~~~l~~~ 230 (392)
T PRK12382 176 ---------GFAALALTTMVLPLLA----WAFNGTVRKVPAHA---G---ERPSLWSVVG------LIWKPGLGLALQGV 230 (392)
T ss_pred ---------ChHHHHHHHHHHHHHH----HHHHHhccCCCCCc---c---cCchHHHHHH------HHHHhHHHHHHHHH
Confidence 8998777654442222 22222233322111 0 1111112221 11211122222223
Q ss_pred HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC
Q 040770 294 IELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE 373 (521)
Q Consensus 294 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (521)
.......+.+.|+.+. |++. .++......++.++++++.|++.||+++|+ .+..+..+.++.++++...+
T Consensus 231 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK12382 231 GFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-------VAIVSLLVETVGLLLLWLAP 300 (392)
T ss_pred HHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-------ehHHHHHHHHHHHHHHHHcc
Confidence 3444556777787664 6653 455566677888899999999999999876 34444445555555555556
Q ss_pred cHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHH
Q 040770 374 SLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISL 444 (521)
Q Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~ 444 (521)
+.+..++..++.+++.+...+....... ..+++.||++.|+.+....+|..++|.+. ...+.+++...+.+
T Consensus 301 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~ 373 (392)
T PRK12382 301 TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLA 373 (392)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 6666666777788887776666555544 56889999999999999999999999873 33333333433333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=262.86 Aligned_cols=349 Identities=12% Similarity=0.018 Sum_probs=232.7
Q ss_pred HHHHHHHHHHhhhhcchhchHHHHhhcCCC--------ccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 67 LAWVSFFTCFISTFAAAPLVPIIRDNLNLT--------KTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
++.++.++..++.....+.++.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||++++++.+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~ 111 (481)
T TIGR00879 32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF 111 (481)
T ss_pred HHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHH
Confidence 344455566667777888889888888777 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc---cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 139 APAVFCMSFV---SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 139 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
.++.+++.+. .+++.++++|+++|++.+. .+....++.|++|+++|++++++.+.+..+|..+++.++ ......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~- 189 (481)
T TIGR00879 112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG-SGKVSL- 189 (481)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcC-
Confidence 9999998554 4566899999999999996 678889999999999999999999888888887777655 000111
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCC-----Chhhhhc---c---CCCcccc----------------
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDG-----NLGALQK---K---GNVNKDK---------------- 267 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~---~---~~~~~~~---------------- 267 (521)
.+..+||+.|++.++..++. ++..+++++.|+. +.++.++ + ..+....
T Consensus 190 ----~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (481)
T TIGR00879 190 ----NNTLGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEK 264 (481)
T ss_pred ----CCCccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 12349999999966654444 4444555554421 0000000 0 0000000
Q ss_pred -----chhhHHhhhc---hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 040770 268 -----FSKVFWYGIK---NYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYAS 339 (521)
Q Consensus 268 -----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (521)
.+..++...+ .+.++...+..+...........+.|.++. .+|++....++......++.+++.++++++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 343 (481)
T TIGR00879 265 RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLV 343 (481)
T ss_pred hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011222222 222233333333222223334455565554 4699988888888899999999999999999
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHhh---c--cCc-----HHHHHHHHHHHHhhhhh-cccccccccccc-cccc
Q 040770 340 DVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG---R--AES-----LPIAVVAMVLFSMGTQA-ACGATFGIVPFV-SRRS 407 (521)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~-----~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~~ 407 (521)
||++||+ ....+.++.+++++++. . ..+ .........+++.+.+. ..+....+..+. |++.
T Consensus 344 d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (481)
T TIGR00879 344 DRFGRRP-------LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL 416 (481)
T ss_pred HHhcchH-------HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH
Confidence 9999885 34444444444433332 1 111 22223333333333333 334455555554 7889
Q ss_pred hhhhhhhhhhhhhHHHHhhhhhH
Q 040770 408 LGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 408 ~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
|+++.|+.+...++|++++|.+.
T Consensus 417 ~~~~~~~~~~~~~lg~~i~~~~~ 439 (481)
T TIGR00879 417 RPKGISIAVAANWLANFIVGFLF 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999873
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-30 Score=263.24 Aligned_cols=354 Identities=14% Similarity=0.093 Sum_probs=246.0
Q ss_pred hchHHHHhhcCCC---ccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 040770 84 PLVPIIRDNLNLT---KTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFM 160 (521)
Q Consensus 84 ~~~~~~~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (521)
+..|.+.+|+|++ ..+.+++.+++.+++.++++++|+++||+|||++++++.++.+++.+++++++|++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6778899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH
Q 040770 161 IGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMG 239 (521)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (521)
.|++.++ .+....++.|++|+++|+++.++...+..+|.++++ .++..+. +||+.|++.+++.++..
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~----~~~~~~~--------~wr~~~~~~~i~~~~~~ 257 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP----LVAYFIP--------DWRWLQLAVSLPTFLFF 257 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHH----HHHHHhh--------HHHHHHHHHHHHHHHHH
Confidence 9999996 788999999999999999999998777666665555 4444332 69999999998877666
Q ss_pred HHHHHhcccCCCC-----Chhhhh-------c-cC------------CC--ccccchhhHHhhhchhHHHHHHHHHHHHH
Q 040770 240 ILVLTLGQDLPDG-----NLGALQ-------K-KG------------NV--NKDKFSKVFWYGIKNYRTWVFFVLYGFSM 292 (521)
Q Consensus 240 ~~~~~~~~~~p~~-----~~~~~~-------~-~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (521)
+.. +++||.|+. +.++.. + .+ .+ ..++....+++++++|.++...+...+.+
T Consensus 258 ~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (505)
T TIGR00898 258 LLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLW 336 (505)
T ss_pred HHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHH
Confidence 555 555555421 000000 0 00 00 00000124567788888777666654443
Q ss_pred HHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc
Q 040770 293 GIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA 372 (521)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (521)
.........++.+ .+..+.+.. ....+.++..+++.++.+++.||+|||+ .+.++.++.+++++++...
T Consensus 337 ~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~-------~~~~~~~~~~~~~l~~~~~ 405 (505)
T TIGR00898 337 FTTAFSYYGLVLD-LGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRY-------TMAASLLLAGVALLLLLFV 405 (505)
T ss_pred HHHHHHHHHHhcc-ccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHc
Confidence 3322222222222 233455533 3334566778889999999999999985 5555555555555555444
Q ss_pred CcH--HHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhHhcccchhHHHHHHH---HH
Q 040770 373 ESL--PIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAFFSNSKFSTATGISL---MG 446 (521)
Q Consensus 373 ~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~~~~~~~~~~~~~~~---~~ 446 (521)
++. +...+..++.+++....++..+.+..+. |++.|+++.|+.+....+|++++|.+.. .+.+.....+.+ ++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~ 484 (505)
T TIGR00898 406 PVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLA 484 (505)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHH
Confidence 432 4444555566666666677777777655 8899999999999999999999999855 222222222222 22
Q ss_pred HH-HHHHhhcCCCCCCC
Q 040770 447 AL-TWGSMLLPPSKDPQ 462 (521)
Q Consensus 447 ~~-~~~~~~~~~~~~~~ 462 (521)
++ .+..++++++++++
T Consensus 485 ~~~~~~~~~lpet~~~~ 501 (505)
T TIGR00898 485 LLAGILTLFLPETKGVP 501 (505)
T ss_pred HHHHHHHHcCcCCCCCC
Confidence 22 34445667766544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=246.79 Aligned_cols=333 Identities=13% Similarity=0.035 Sum_probs=249.2
Q ss_pred HHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 69 WVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
....++..+......+.++. +++++|+|..++|++.+.+.++..+.++++|+++||+|||+++..+.++.+++.+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554555554 67899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~ 226 (521)
+++++.+++.|+++|++.+. .++..+++.|++|+++|++++++.....++|..+|+.+++.+.. . +||+
T Consensus 96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-~---------g~~~ 165 (400)
T PRK11646 96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-Y---------DFRL 165 (400)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---------hHHH
Confidence 99999999999999999885 56778999999999999999999999999999888888877762 2 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040770 227 AFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFM 306 (521)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (521)
.|++.+++.++.+++..+..|+.++++ .+++..+.++..+++|+++...+..+..+........++|.|+
T Consensus 166 ~f~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (400)
T PRK11646 166 VCATGAVLFVLAAAFNAWLLPAYKLST----------VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMV 235 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccc----------cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999998887766655555544321110 0111234566778888887766655544444444456788888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh-hhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 040770 307 YDRFNLKLHTAGTIAATFGMANIFARPFGGYASDV-AGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLF 385 (521)
Q Consensus 307 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (521)
++..+ ++.+.+++.++..+....+....+++.|| ++.++ .+..+.++.+++.+++...++.+...+..+++
T Consensus 236 ~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 307 (400)
T PRK11646 236 NDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-------RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF 307 (400)
T ss_pred HhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 87644 67788888777777666655555666654 44332 33444445555555555556666555566667
Q ss_pred Hhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 386 SMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 386 g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+++.+...+...++.. ..|++.+|+++|+.+....+|..++|.+
T Consensus 308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l 352 (400)
T PRK11646 308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIG 352 (400)
T ss_pred HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence 7777767677767665 4588999999999999999999999987
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=242.68 Aligned_cols=316 Identities=23% Similarity=0.287 Sum_probs=274.6
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
+....+...++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 45666777788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~ 226 (521)
+++++.+++.|++.|++.+. .+...+++.|++|+++|++.+++.+....+|..+++.+++.+.+.. +||+
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~ 154 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---------GWRW 154 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---------hHHH
Confidence 99999999999999999996 7788999999999999999999999999999988887777666543 7999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040770 227 AFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFM 306 (521)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (521)
.|++.+++.++..+...++. |.++...+..++..........+.|.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (352)
T cd06174 155 LFLILAILGLLLALLLLFLL--------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYL 202 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999988777666655541 5677777777788888888888999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 040770 307 YDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFS 386 (521)
Q Consensus 307 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (521)
.+.+|.+..+.+.......++..++.++.+++.||+++|+ ..+..+..+..++.+.....++.+...+..++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g 276 (352)
T cd06174 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR------LLLLIGLLLAALGLLLLALAPSLALLLVALLLLG 276 (352)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999873 1444555666666666666667777888888899
Q ss_pred hhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 387 MGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
++.+...+...++..+. |++.|++..|+.+...+++..++|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred HHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888887754 779999999999999999999999983
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=248.83 Aligned_cols=354 Identities=10% Similarity=-0.002 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
+..+.+..++.........+.+|. +.+++|++..++|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 444455666667776676666654 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCC
Q 040770 144 CMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFT 222 (521)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~ 222 (521)
+.+++++++.++++|++.|.+.+. .+....+..|.+|+++|++++++.....++|..+++.+++.+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~--------- 158 (395)
T PRK10054 89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q--------- 158 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---------
Confidence 999999999999999988887665 56778899999999999999999999999999888887776653 2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH
Q 040770 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNII 302 (521)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (521)
+|+.+|++.+++.++..++..+..++.++++++ ++ + +. ...++.+++|+++...+..++.......+..+.
T Consensus 159 g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~---~~----~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 229 (395)
T PRK10054 159 SINLPFWLAAICSAFPLVFIQIWVQRSEKAIAT---ET----G-SV-WSPSVLLQDKALLWFTCSGFLASFVSGAFASCI 229 (395)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcccccccc---ch----h-hh-hhhhhhccCceehHHHHHHHHHHHHHHHhhhhH
Confidence 899999998887776655555544332211110 00 0 11 123567888898888777776665555555566
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc-CcHHHHH
Q 040770 303 SEFMYDR--FNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA-ESLPIAV 379 (521)
Q Consensus 303 ~~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 379 (521)
+.|+... .+.+....+.+.....+......+..+++.||.++|+ .+..+..+.++++..+... ++.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (395)
T PRK10054 230 SQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP-------LMTAGTLCFVIGLVGFIFSGNSLLLWG 302 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh-------HHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 6666432 3556667777777777777777788889999998775 4445555455544444433 4555556
Q ss_pred HHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHHH
Q 040770 380 VAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISLM 445 (521)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~~ 445 (521)
+..++.+++.....|...+.+.+ .|++.++++.+..+ ...+|..++|.+. ...+.++....+.+.
T Consensus 303 ~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 303 MSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 67778888877777776666654 47888899888755 5668888998873 333444444344433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=244.65 Aligned_cols=334 Identities=12% Similarity=0.021 Sum_probs=258.2
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHH----HHHHHHHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGT----SFLLLLSAPAVF 143 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~~~~~ 143 (521)
+.+.++..++......|.+|.+.+++|+|..++|++.+++.+...++++++|+++||+||++.. ..+..+..+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 5666777777778888999999999999999999999999999999999999999999985433 222222222 2
Q ss_pred HHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCC
Q 040770 144 CMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFT 222 (521)
Q Consensus 144 ~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~ 222 (521)
.+..+++++.+++.|+++|.+.+. .+...++..++ .++|++..|....+.++|.++++.+++.+.+..
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~--------- 155 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF--------- 155 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 445688999999999999988885 66666776554 478899999998888888888887777766644
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH
Q 040770 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNII 302 (521)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (521)
|||..|++.++. ++..++.+.+.++.|++++ ++++ +.+..+.+++.+|+|+++...+..++.......+..+.
T Consensus 156 g~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~ 228 (382)
T TIGR00902 156 DEQNILAILTAG-LAFMLIGFLIKPTIPPKDA---IPED---ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS 228 (382)
T ss_pred ChhHHHHHHHHH-HHHHHHHHHcCCCCCCCcc---cccc---ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887655 3333333333332122111 1100 11112456788899999999988888888888888899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHH
Q 040770 303 SEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAM 382 (521)
Q Consensus 303 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (521)
|.|+++ .|.++...|.+..+..++.+++.++.+++.||++.|+ .+.++.+...+...++...++.+.++...
T Consensus 229 ~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~q 300 (382)
T TIGR00902 229 AIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-------LLLISAIACVGRWAIIGAIEAFPLIFLLQ 300 (382)
T ss_pred HHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-------HHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 999977 6999999999999899999999999999999999875 66677777777777777788888888888
Q ss_pred HHHHhhhhhcccccccccccccccchhhhhhhhhh-hhhHHHHhhhhh
Q 040770 383 VLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGA-GGNFGSGLTQLA 429 (521)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~i~~~l 429 (521)
++-++..+...+....++.+.|++.++++.++++. ...+|..++|.+
T Consensus 301 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 301 ILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888776688899999999874 345777777776
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=240.30 Aligned_cols=334 Identities=14% Similarity=0.089 Sum_probs=223.5
Q ss_pred HHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHH-HHHHHHhhhhHhhhhhcCCcHHH-HHHHHHHHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASV-SGSIFSRLIMGAVCDLIGPRYGT-SFLLLLSAPAVFC 144 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~ 144 (521)
.++..++..+......|.+|. +.+++|++.+++|++.+... +++.++.+++++ .||+|||+.+ ..+.++.+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~ 98 (393)
T PRK15011 20 FLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTL 98 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHH
Confidence 344566666666666666666 57889999999999977654 466666666666 9999998875 5566767788888
Q ss_pred HhhccCHHHHHHHHHHHH-hhhhhhhhHHHHHHhhcCCcch--hhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCC
Q 040770 145 MSFVSDAQGYIAARFMIG-FCLATFVSCQYWTTIMFNGKIL--GLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPF 221 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G-~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~ 221 (521)
.+++++++.+++.+.+.| ++....+...+++.++.++++| +...++.+.+.++|..+|+.+++.+....
T Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-------- 170 (393)
T PRK15011 99 FAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-------- 170 (393)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc--------
Confidence 889999998876655544 4433466777888888766655 34457777777888888877777665543
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhh
Q 040770 222 TAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNI 301 (521)
Q Consensus 222 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (521)
|||..|++.++..++.+++.++..||.|++++.. ++ +.+ ..++ +.+..+.......+.+.....+..+
T Consensus 171 -gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
T PRK15011 171 -SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-TG----TLE----APRR--NRRDTLLLFVICTLMWGTNSLYIIN 238 (393)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc-cc----ccc----cccc--ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888877777777666654332111 00 000 0111 1122233333334444455556678
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHH
Q 040770 302 ISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVA 381 (521)
Q Consensus 302 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (521)
.|.|+++.+|+++.+.+.+.....++.+++.++.|+++||+++|+ .+..+.....+.+......++.+...+.
T Consensus 239 ~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (393)
T PRK15011 239 MPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-------LMRVAAVAGVCFYAGMLMAHSPAILLGL 311 (393)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999998888999999998888777888889999999999999885 3333333333333333333445444444
Q ss_pred HHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 382 MVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 382 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.++.+++.+...+....+..+..|+.++++.++++...++|..++|.+
T Consensus 312 ~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l 359 (393)
T PRK15011 312 QLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSL 359 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555555679999999999889999999987
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=240.35 Aligned_cols=322 Identities=14% Similarity=0.068 Sum_probs=240.8
Q ss_pred hcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 040770 80 FAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARF 159 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 159 (521)
..+++.+|.+.+++|++.++.+++.+++.+++.+++++.|++.||+|||+++.++.++..++.+++ .+++++.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999988888887 7899999999999
Q ss_pred HHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHH
Q 040770 160 MIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIM 238 (521)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (521)
+.|++.+. ......++.|+++ ++|++++++.+...++|..+++.+++.+..... .+||+.|.+.+++.++.
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-------~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-------GHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHH
Confidence 99999986 5566778888885 689999999988888888888877666654321 14999998877654433
Q ss_pred HHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH
Q 040770 239 GILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAG 318 (521)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~ 318 (521)
.. ...++.+++++ ++ +... ....++.+++|.++...+..++....++....++|.|+++ .|++..+.+
T Consensus 168 ~~---~~~~~~~~~~~---~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g 235 (355)
T TIGR00896 168 LL---AWIPQVRRRVA---AN-QTTT----RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAG 235 (355)
T ss_pred HH---HHhhhhccccC---CC-CCCC----CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 22 12222221111 00 0000 1224456788888877777776667777788899999987 599999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccc
Q 040770 319 TIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFG 398 (521)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 398 (521)
.+.+...++.++++++.|++.||+++|+ ..+..+..+.+++.+.+....+.... ...+++|++.+...+...+
T Consensus 236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~ 308 (355)
T TIGR00896 236 SLLALMQLAQAASALLIPALARRVKDQR------GIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALT 308 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccch------HHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHH
Confidence 9999999999999999999999995442 13334444444444444333332222 2456778888777776655
Q ss_pred ccc-cc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 399 IVP-FV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 399 ~~~-~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
... +. +++.++...++.+..++++..++|.+
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~ 341 (355)
T TIGR00896 309 LIGLRSRQAAQAAALSAMAQSIGYLLAALGPLF 341 (355)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 33 45677899999999999998899876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=243.62 Aligned_cols=342 Identities=13% Similarity=0.079 Sum_probs=239.1
Q ss_pred HHHHhhhhcchhchHHHHhhcC--CCccchhhHHHH-----HHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHH
Q 040770 73 FTCFISTFAAAPLVPIIRDNLN--LTKTDVGNAGVA-----SVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCM 145 (521)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 145 (521)
+.++++++.+++..+.+.+++. .++.+.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4567778788888888887764 445566654443 333445789999999999999999999999999999999
Q ss_pred hhccCHH--------HHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 040770 146 SFVSDAQ--------GYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA 216 (521)
Q Consensus 146 ~~~~~~~--------~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~ 216 (521)
+++++++ .++++|+++|++.+. .+....++.|++++++|+++.++.+.+..+|..+++.++..+...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999876 478899999999986 7788899999999999999999998888888877777666554322111
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhH--HHHHHHHHHHHHHH
Q 040770 217 GATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYR--TWVFFVLYGFSMGI 294 (521)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 294 (521)
.. +..+||+.|++.+++.++... .....+ |+++.+.++++.+ +..+..++.+++++ ++...+..++....
T Consensus 163 ~~-~~~~w~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T TIGR00883 163 AL-LEWGWRIPFLVSAVLVLIGLY-LRRNLE---ETPVFEKAQEKHK---KKRGPIRETLTKHRKPFLLGLGLVIATTTT 234 (394)
T ss_pred Hh-hccchHHHHHHHHHHHHHHHH-HHHhcC---CChhHHHHHhccc---cccCCHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 10 133899999987766544332 223323 3222111111111 11123445555554 66666666666666
Q ss_pred HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHH-HHH--HHH-hh
Q 040770 295 ELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLG-GVF--CVW-LG 370 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~ 370 (521)
......++|.|+++.+|.++.+.+.......++.+++.++.+++.||++||+ .......+. ... .+. ..
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-------VLIIFTVLAALLAVPLLMALL 307 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 7777788999998888999999999999999999999999999999999875 222222111 111 111 11
Q ss_pred ccCcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhh-hhhhHHHHhhhhh
Q 040770 371 RAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTG-AGGNFGSGLTQLA 429 (521)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~-~~~~~g~~i~~~l 429 (521)
...+.+......++.+++.+...+...+++.+. |++.|+++.++.. ....+|..++|.+
T Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~ 368 (394)
T TIGR00883 308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI 368 (394)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHH
Confidence 223555555666777777777777777776654 8889999999854 4455777788877
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=241.41 Aligned_cols=342 Identities=14% Similarity=0.097 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc-----CCcHH-HHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-----GPRYG-TSFLLLLS 138 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~ 138 (521)
...++...+..++......+.+|.+.++.|.+..+++.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 445566677788888888889999999999999999986 4444444 5889999999999 99885 66788888
Q ss_pred HHHHHHHhhc---cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 139 APAVFCMSFV---SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 139 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
+++.+++++. ++++.+.+.+++.|++.+. .++..+++.|++|+++|+++.++...+..+|..+++.++..+...
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~-- 169 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR-- 169 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8887777775 4788899999999999886 668889999999999999999999888888887776655555431
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHH
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGI 294 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
..|||..|++.+++.++..+..++ .||.++..+ +++ +.+++..+.+++.++++..|...+..++....
T Consensus 170 ------~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~---~~~--~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~ 237 (491)
T PRK11010 170 ------YLGWQGMYWLMAALLIPCIIATLL-APEPTDTIP---VPK--TLEQAVVAPLRDFFGRNNAWLILLLIVLYKLG 237 (491)
T ss_pred ------ccCHHHHHHHHHHHHHHHHHHHHh-cCCCccccc---ccc--chhhhHHHHHHHHHcCcCHHHHHHHHHHHHHH
Confidence 129999999999887666544443 454332110 000 01111224566677777777666665555555
Q ss_pred HHHHhhhHHHHHHHhcCCCHHHHHHHHH-HHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHH---HHHHHhh
Q 040770 295 ELTTNNIISEFMYDRFNLKLHTAGTIAA-TFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGG---VFCVWLG 370 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 370 (521)
......+.++|+.+.+|++..+.+++.. ...++.+++.+++|+++||+++|+ .+.++.++.+ +.+.++.
T Consensus 238 ~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-------~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 238 DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-------ALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 5555677888887778999999999874 556799999999999999999874 2222222222 2222222
Q ss_pred cc-CcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 371 RA-ESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 371 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.. ++.+.+....++..+..+...+..+++.. ..+++..++..|+.+....+|..+++.+
T Consensus 311 ~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~ 371 (491)
T PRK11010 311 ITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV 371 (491)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34433333344433333333444455544 3477788999999999999888776665
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-28 Score=270.19 Aligned_cols=354 Identities=11% Similarity=0.008 Sum_probs=255.7
Q ss_pred HHHHHHH-HhhhhcchhchHHHHhhcCCCcc--chhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHH
Q 040770 69 WVSFFTC-FISTFAAAPLVPIIRDNLNLTKT--DVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCM 145 (521)
Q Consensus 69 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 145 (521)
+++.++. +.+......+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~ 94 (1146)
T PRK08633 15 LLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLI 94 (1146)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 3333343 33444445556667777776544 47899999999999999999999999999999999887766555544
Q ss_pred ---hhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCC
Q 040770 146 ---SFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPF 221 (521)
Q Consensus 146 ---~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~ 221 (521)
..+++++.++++|+++|++.+. .++..+++.|++|+++|++++++.+.+.++|.++|+++++.+.......+....
T Consensus 95 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~ 174 (1146)
T PRK08633 95 VLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEI 174 (1146)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 3457899999999999999996 678889999999999999999999999999998888888777654110000011
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhh
Q 040770 222 TAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNI 301 (521)
Q Consensus 222 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (521)
.+|++.+.+.++...+++++..+.+++.|+......++..........+.++.+++++.++...+..++.+.....+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1146)
T PRK08633 175 LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQAN 254 (1146)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 14555555544444444444444445544332111001111111223455677788888888777777776667777788
Q ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHH
Q 040770 302 ISEFMYDRFNLKLH-TAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVV 380 (521)
Q Consensus 302 ~~~~l~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (521)
+|.|+.+.+|++.. ..+++.+...++.+++.++.+++.||+++++ .+.++.++.+++++++....+.+..++
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG-------LVPLGALGLALSLFLLPTAPSLASVLV 327 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc-------chhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999998999998 9999999999999999999999999998774 344444445555555555557777777
Q ss_pred HHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 381 AMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 381 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..+++|++.+...+...+++. ..|++.||+++|+.+++.++|.++++.+
T Consensus 328 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 328 LFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 788888888877777777765 4588999999999999999888777665
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-27 Score=217.17 Aligned_cols=364 Identities=14% Similarity=0.106 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV 142 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 142 (521)
..+..+...+++.++......+++|.+++.|+++..|.+++..+++.+|.+.+++.|++.+|+|+|+.++.++.++++++
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34566677888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh---hccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH-----
Q 040770 143 FCMS---FVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI----- 213 (521)
Q Consensus 143 ~~~~---~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~----- 213 (521)
.+.. ...+|..++++-++.|.|.+. .+++..+++...++++-.+.+.+.+.+.++|..++|+++..+...-
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 9984 667899999999999999996 7799999999999988899999999999999999998887666520
Q ss_pred -----HHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHH
Q 040770 214 -----KLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLY 288 (521)
Q Consensus 214 -----~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (521)
..........||++|...+...+++.+..... +.|+.+....++. +.++ ....+.+++|+++...+..
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~--k~p~~~~~~~~~~---~~~~--~~~~~l~~~~~~~~gvl~~ 245 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS--KLPDLQVAAPSLG---ASGS--AGLSSLFQNKHLRLGVLAI 245 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc--cCCcCCccccccc---cccc--chHHHHHhChHHHHHHHHH
Confidence 00000011258999998888766655554433 2233322111111 1111 1467889999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 040770 289 GFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW 368 (521)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (521)
++..+.+....+|++.|+.+..|.+..++....+.+..+.++|++++.++..|+...+ .+....++..+.++.
T Consensus 246 FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k-------~Laf~a~~~ill~~~ 318 (422)
T COG0738 246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK-------YLAFYALIAILLLLA 318 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHH
Confidence 9999999999999999999977999999999999999999999999999999998765 666666555555566
Q ss_pred hhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh-HhcccchhHHHHHH
Q 040770 369 LGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA-FFSNSKFSTATGIS 443 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l-~~~~~~~~~~~~~~ 443 (521)
....++ ...+...++.|++.+..+|..++... .++ ++... .|....+.-+|+++.|++ ....|.++......
T Consensus 319 ~~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 319 VALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccc-cceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 666666 44566778899999999999999865 445 44333 444455566788888887 45555555444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=232.42 Aligned_cols=330 Identities=13% Similarity=0.038 Sum_probs=243.0
Q ss_pred HHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCc----HHHHHHHHHHHHHHHHHhh
Q 040770 72 FFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPR----YGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~ 147 (521)
++..+.......|.+|.+.+|+|.|..++|++.+++.++..++++++|++.||+||| +.+.+...+. .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 455555667788899999999999999999999999999999999999999999984 3333222222 2233445
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~ 226 (521)
++++|.+++.|++.|++.+. .+...+++.++ .++|+++++......++|.++|+.+++.+.+.. |||.
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~---------g~~~ 159 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF---------GEQA 159 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc---------ChhH
Confidence 68999999999999998875 56666676666 456888888888888888888888777776654 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040770 227 AFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFM 306 (521)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (521)
.|++.++..++..+ ..+..|+.+ +++.+++ +.++..+.+++.+++|+++...+..++.........++.|.|+
T Consensus 160 ~f~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 232 (382)
T PRK11128 160 ILWILTAGVASMLL-GQLLRPTIM---PQGESRQ---QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW 232 (382)
T ss_pred HHHHHHHHHHHHHH-HHHccCCCC---Ccccccc---ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 99988765444333 333333221 1110111 1111124578889999999888877776666666777888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 040770 307 YDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFS 386 (521)
Q Consensus 307 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (521)
.+ .|.+..+.|.+..+..++.++..++.+++.||+++|+ .+..+.+..++..+++...++.+..++..++.|
T Consensus 233 ~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 304 (382)
T PRK11128 233 QA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-------LLLLSAICGVVRWGLMGSTTALPWLIVIQILHC 304 (382)
T ss_pred HH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66 6999999999998888899999999999999999875 455566666666666666777777777888888
Q ss_pred hhhhhcccccccccccccccchhhhhhhhhhh-hhHHHHhhhhh
Q 040770 387 MGTQAACGATFGIVPFVSRRSLGILSGLTGAG-GNFGSGLTQLA 429 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~i~~~l 429 (521)
++.+...+....+..+.+++++++..++.+.. ..+|..++|.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 305 GTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred HHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777776666677778888888744 34566777776
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=226.67 Aligned_cols=336 Identities=8% Similarity=0.022 Sum_probs=252.8
Q ss_pred hhcchhchHHHHhhcCCCccc-hhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 040770 79 TFAAAPLVPIIRDNLNLTKTD-VGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAA 157 (521)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (521)
+...+.+.|.+.+|+|+|.+| .|.+.++++.+|+++.+++|+++||+|.|+++.++.+.+++..++.+++++++.+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH--HHHH
Q 040770 158 RFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP--GWLH 235 (521)
Q Consensus 158 r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~--~~~~ 235 (521)
|++.|++.|+..+...++..|+|+++|+++.++..++..+|.++++++++++.. . |||+-+.+. ...+
T Consensus 122 R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s-~---------gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 122 EVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT-L---------GWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------CchhHHHHHHHHHHH
Confidence 999999999744999999999999999999999998888888888877766322 1 787755433 2223
Q ss_pred HHHHHHHHHhcccCCCCCh---hh---------hhc--cCC---Cc---c-------ccchhhHHhhhchhHHHHHHHHH
Q 040770 236 VIMGILVLTLGQDLPDGNL---GA---------LQK--KGN---VN---K-------DKFSKVFWYGIKNYRTWVFFVLY 288 (521)
Q Consensus 236 ~~~~~~~~~~~~~~p~~~~---~~---------~~~--~~~---~~---~-------~~~~~~~~~~~~~~~~~~~~~~~ 288 (521)
.++++++.+++|..+++-. ++ .+. .+. .. + ...+..++...+||.++...+-.
T Consensus 192 ~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWw 271 (511)
T TIGR00806 192 MTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWW 271 (511)
T ss_pred HHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 3444555555664333210 00 000 000 00 0 11345566678888888888877
Q ss_pred HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 040770 289 GFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW 368 (521)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (521)
.+....++-+.+|......+..+-.+..-|.+-++..+.+.+..+..|++-.++.+. -...+.++.++.+..+++
T Consensus 272 a~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-----~~l~l~v~s~~~~gll~~ 346 (511)
T TIGR00806 272 VFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-----SKLLIAVVSAIQAGLVFW 346 (511)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-----HHHHHHHHHHHHHHHhhh
Confidence 777777777777777666554332223556666777778888888888885554332 134555666666777888
Q ss_pred hhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 369 LGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+...++.|..++..+++...+....++...-++ .+..+.-|...|+++++..+-..+-..+
T Consensus 347 m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 347 MSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 888999999999999999988888877766554 6677888999999888887766666554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=234.36 Aligned_cols=361 Identities=15% Similarity=0.078 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV 142 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 142 (521)
+.+..+|.+.+++.++..+....++.+..++.-|+..++++..+..+...+.++++|.++||++||++++.+.++.++..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 44666678888888888887788888888888899999999999999999999999999999999999999998877665
Q ss_pred HHHhh-----ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 040770 143 FCMSF-----VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA 216 (521)
Q Consensus 143 ~~~~~-----~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~ 216 (521)
++.++ ..+.|.+++.-++.|++.+. .|+..+++.|..|+++...++++.+...++...+||.+++.+....
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~--- 166 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF--- 166 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---
Confidence 55443 25789999999999999996 7788999999999999999999999999999999999998888776
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHH
Q 040770 217 GATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIEL 296 (521)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (521)
|-.++|.+.++..++..+......++.+++ +. .++.-.+...+.++...++|.+....+..++......
T Consensus 167 ------G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~--~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~ 235 (524)
T PF05977_consen 167 ------GAAAAFLINALSFLISILALLRWKPPPPPS---SL--PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFAS 235 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHcccccccc---cc--chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence 778889888776555443333332211111 11 1111123344566666777777666555555554455
Q ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHH
Q 040770 297 TTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLP 376 (521)
Q Consensus 297 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (521)
.+...+|.+..+.+|.++...|++.+..+++.++|.++.+++.+|+++++ ++..+.++.+++++.+.+.++.+
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~-------lv~~~~~~~a~~~~~lal~~~~~ 308 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR-------LVLLASLLFALALLLLALSPSFW 308 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch-------hhHHHHHHHHHHHHHHhcchHHH
Confidence 55667899999999999999999999999999999999999988887764 55566677777777888888888
Q ss_pred HHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHH
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISL 444 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~ 444 (521)
...+.+++.|++.........+... ..|++.+|++++++++....+..+|.+++ ...+.++....+.+
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~ 378 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLI 378 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 8888888899888777777767666 66999999999999999888888888874 33444444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=239.31 Aligned_cols=345 Identities=15% Similarity=0.118 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
++.++..+++..+......+.+|.+ .+++|++..+.|++.+++.+++.++++++|+++||+|||++++++..+.+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 91 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG 91 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4444556666666666666666665 455999999999999999999999999999999999999999887766655443
Q ss_pred HHh---hccC-----HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 144 CMS---FVSD-----AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 144 ~~~---~~~~-----~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
... .++. +...++++++.|.+... .+....+. +.. .+++++.++......++|..+++.+++.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-- 167 (420)
T PRK09528 92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-- 167 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--
Confidence 221 1111 11112223333333222 22222332 222 34567788888888888888888776665432
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHH
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGI 294 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
+|++.|++.+++.++..++.++..++.++++..+ +++..+++....+..+..+++|.++...+...+....
T Consensus 168 --------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~ 238 (420)
T PRK09528 168 --------NPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-NALGANASAVSLKDALALLKLPKFWFLVLYVIGVACF 238 (420)
T ss_pred --------CchHhHHHHHHHHHHHHHHHhcccccccchhhhc-cchhcccccccHHHHHHHccCCCeEeehHHHHHHHHH
Confidence 8999999988887766666555544433321111 1111111112234566778888887666555444444
Q ss_pred HHHHhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 040770 295 ELTTNNIISEFMYDRF---NLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR 371 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (521)
......++|.|+.+.+ +.+....+.+.++..++.+++.++.|++.||+++|+ .+..+.++.++...++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-------ALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHh
Confidence 4444556777765543 566677889888888999999999999999999986 455555555555556666
Q ss_pred cCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhh-hhhhhhHHHHhhhhh
Q 040770 372 AESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGL-TGAGGNFGSGLTQLA 429 (521)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~g~~i~~~l 429 (521)
.++.+..+...++.+++.+...+....++. ..|++.+++..+. .+....+|.+++|.+
T Consensus 312 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~ 371 (420)
T PRK09528 312 ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL 371 (420)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence 667776666667777766655555556655 4588888887766 567778888888887
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=231.13 Aligned_cols=325 Identities=13% Similarity=0.110 Sum_probs=232.4
Q ss_pred hcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc-----CCcHH-HHHHHHHHHHHHHHHhhc---cC
Q 040770 80 FAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-----GPRYG-TSFLLLLSAPAVFCMSFV---SD 150 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~ 150 (521)
....+.+|.+.+|+|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 345678899999999999999999755 555554 89999999998 89887 567788888887777777 46
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHH
Q 040770 151 AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229 (521)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (521)
++.+.+..++.+++.+. .++..+++.|++|+++|+++.++...+.++|..+++.++..+......... ...+||..|+
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~-~~~~wr~~f~ 161 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG-LITLWGYIFF 161 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccccHHHHH
Confidence 66677777788877775 668889999999999999999999888888888888777666554411100 1124999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhH---HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040770 230 IPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYR---TWVFFVLYGFSMGIELTTNNIISEFM 306 (521)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (521)
+.+++.++..+..++..||.++.++. + ++++++..+.++..+++|. ++...+..++..........++|.|+
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQEDASV---P--KPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFL 236 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccc---c--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988776555555554552221110 0 0011122345566667664 66666666666666777778999999
Q ss_pred HHhcCCCHHHHHHHHHHHH-HHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc-----------Cc
Q 040770 307 YDRFNLKLHTAGTIAATFG-MANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA-----------ES 374 (521)
Q Consensus 307 ~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 374 (521)
.+ +|+++.+.+.+....+ +..+++.++++++.||+++|+ .+..+.++.++...++... ++
T Consensus 237 ~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 237 LD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-------ALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 88 7999999998877665 577899999999999999875 3333444443333322221 23
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhh
Q 040770 375 LPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGN 420 (521)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 420 (521)
.+......++.+++.+...+...++..+ .|++.+|+..|+.+...+
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4555556667788888888888888764 599999999999887654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=230.32 Aligned_cols=364 Identities=15% Similarity=0.117 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
++.+...+++.+.....+.+.+|.+ .+++|.++.+.|++.+++.+++.++++++|+++||+|||+.++.+.+..+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3444556666777777777777765 556899999999999999999999999999999999999999988777665443
Q ss_pred HH---hhcc-----CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 144 CM---SFVS-----DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 144 ~~---~~~~-----~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
.. .+.+ .+..+++.+++.|++.+. .+....+..+.. ++++..++......++|.++|+.+++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-- 159 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-- 159 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc--
Confidence 32 1221 233456678888888775 556666666643 2345566777777788888887776655331
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHH
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGI 294 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
+||.+|++.+++.++..++.+...++.|++++.+ ++.+.++++...+++++.+++|.++...+..++....
T Consensus 160 --------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 230 (396)
T TIGR00882 160 --------DPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-NALGANASAFSLKLALELFRQRKFWMFVLYVVGVACV 230 (396)
T ss_pred --------CchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-cccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 8999999998888877666655544443321111 1000111111234577888999988777666555555
Q ss_pred HHHHhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 040770 295 ELTTNNIISEFMYDRF---NLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR 371 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (521)
+.....+.+.|+.+.+ +.+....+...++..+...++.+..+++.||+++|+ .+.++..+.++...+...
T Consensus 231 ~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-------~l~~~~~l~~l~~~~~~~ 303 (396)
T TIGR00882 231 YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-------ALLIAGTIMSVRIIGSSF 303 (396)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHHh
Confidence 5555567788877654 456667788888888889999999999999999986 455555555555555555
Q ss_pred cCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhh-hhhhhhHHHHhhhhh-HhcccchhHHHHHHHHHHH
Q 040770 372 AESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGL-TGAGGNFGSGLTQLA-FFSNSKFSTATGISLMGAL 448 (521)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~g~~i~~~l-~~~~~~~~~~~~~~~~~~~ 448 (521)
.++.+..++..++.+++..........+.. ..+++.++++.+. .+....+|+.+++.+ ....+.+++...+.+.+++
T Consensus 304 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 304 ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 667766666666666665444333344444 3467777777766 567788899998877 3333333444444444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=233.94 Aligned_cols=354 Identities=15% Similarity=0.108 Sum_probs=280.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH
Q 040770 60 PHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA 139 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 139 (521)
..|.+....+++.+...-....++.+.+.++++++.+.++++|+.++....+.+..++.+.+.||+|.|.+.+.|.++.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 34544444445555554455667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHH-HHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 140 PAVFCMSFVSDAQGYIAA-RFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~-r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
++.++.+|++++|++++. -++.|+|.|. +.+...++..+| +++|+.++|+...+.++|..+-+.+...+....
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~---- 197 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY---- 197 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh----
Confidence 999999999999998875 5788999996 678888888888 889999999997777777754444333333332
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChh---------------------hhhcc----------------
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLG---------------------ALQKK---------------- 260 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~---------------------~~~~~---------------- 260 (521)
|||+.+++.+.+.+-..+....+.|..++..+. ....+
T Consensus 198 -----G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (509)
T KOG2504|consen 198 -----GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLK 272 (509)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhh
Confidence 999999999999877777777776633322100 00000
Q ss_pred -CCCccc--cchhhH----HhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh
Q 040770 261 -GNVNKD--KFSKVF----WYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARP 333 (521)
Q Consensus 261 -~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~ 333 (521)
..++.+ .....+ ..+++++.++.+.+...+....++....++|.|..+ +|++..++..+.++.++..+++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 273 RGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred hCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhh
Confidence 000000 111122 477899999999999999999999999999999985 699999999999999999999999
Q ss_pred hhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhh
Q 040770 334 FGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILS 412 (521)
Q Consensus 334 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~ 412 (521)
+.|++.|+...++ ..+..++.++.++..+......+.+.++...+++|+..+........... .++.+.-..+.
T Consensus 352 ~~G~laD~~~~~~-----~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~ 426 (509)
T KOG2504|consen 352 ILGLLADKPGIRA-----LVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAY 426 (509)
T ss_pred hhhhhcCccccch-----HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHH
Confidence 9999999988543 45667777777777778888889999999999999998877776654544 55888899999
Q ss_pred hhhhhhhhHHHHhhhhh
Q 040770 413 GLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 413 g~~~~~~~~g~~i~~~l 429 (521)
|+...+..++..++|.+
T Consensus 427 Gl~l~~~gi~~l~gpPi 443 (509)
T KOG2504|consen 427 GLLLLFQGIGALVGPPI 443 (509)
T ss_pred HHHHHHhHHHHHcCccc
Confidence 99999999999999998
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=262.11 Aligned_cols=323 Identities=11% Similarity=-0.040 Sum_probs=235.8
Q ss_pred HHHhhcCCCc-cchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHH---HHHHHHHHHHHHhhccCHHHHHHHHHHHHh
Q 040770 88 IIRDNLNLTK-TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSF---LLLLSAPAVFCMSFVSDAQGYIAARFMIGF 163 (521)
Q Consensus 88 ~~~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 163 (521)
.+..+.+.+. ...++..+++.+++.++++++|+++||+|||+++.. ..++..+..++....+++++++++|+++|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi 120 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI 120 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444333 447888999999999999999999999999997643 223333333333445899999999999999
Q ss_pred hhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 040770 164 CLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILV 242 (521)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (521)
+.+. .++..+++.+++++++|++++++.+++.++|.++|+.+++++.... +|++.|++.++..++ +++.
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~---------~~~~~~~~~~~~~~~-~~~~ 190 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG---------NFVILVALLMGIAVL-GWLA 190 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHH-HHHH
Confidence 9996 6889999999999999999999999999999988888888776643 899999554444343 3444
Q ss_pred HHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHH
Q 040770 243 LTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAA 322 (521)
Q Consensus 243 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~ 322 (521)
.+.+++.+++.... +......+.....++.+.+++.++...+..++.+.....+..++|.|+.+.+|.++...+++.+
T Consensus 191 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~ 268 (1140)
T PRK06814 191 SLFIPKTGNAAPDL--KIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLA 268 (1140)
T ss_pred HhhCCCCCCCCCCC--eeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHH
Confidence 44444433221110 0000111122355777889999999888888887777788889999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc--------------------cCcHHHHHHHH
Q 040770 323 TFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR--------------------AESLPIAVVAM 382 (521)
Q Consensus 323 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~ 382 (521)
..+++.++|.++.|++.++..+++ .+..+.++.+++.+.+.+ ..+.+.+++..
T Consensus 269 ~~~~g~~ig~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1140)
T PRK06814 269 VFSVGVAVGSFLASKLSEGRITLL-------YVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDL 341 (1140)
T ss_pred HHHHHHHHHHHHHHHHhCCceeee-------eehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHH
Confidence 999999999999999998776553 112222222221111111 14556667777
Q ss_pred HHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 383 VLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+++|++.+...+...+++. ..|++.+|+++|+.+++..++..+++.+
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~ 389 (1140)
T PRK06814 342 FGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTII 389 (1140)
T ss_pred HHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHH
Confidence 7888888877777777765 5699999999999999999999888886
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-26 Score=225.91 Aligned_cols=346 Identities=17% Similarity=0.152 Sum_probs=243.6
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
.++.+...++.....+..++.+..|+|- .....|+.+.+.++.+++.++.|+++|.||||++++.+.++..+|.++++.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3444444555566667788999999994 588899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHH
Q 040770 148 VSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIA 227 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~ 227 (521)
++|...++++..+.|+|.|........++|..|.|.|+...++... ...+....++.++..+. .+.+|||.
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~----~~i~~~~~~~~ia~~~~-----~~~~WRw~ 198 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASI----PFIITTWISPLIAQLFA-----AHSGWRWI 198 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHH----HHHhhhcccHHHHHHhc-----cCCCcchH
Confidence 9999999999999999988655566679999999999877766543 33333345556655542 23389999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCC--Chhh------hhccC----------------------C-Cc---cccc-----
Q 040770 228 FFIPGWLHVIMGILVLTLGQDLPDG--NLGA------LQKKG----------------------N-VN---KDKF----- 268 (521)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~--~~~~------~~~~~----------------------~-~~---~~~~----- 268 (521)
|++.++...+..++.+++.+.++.. +.++ .++-+ . .. ..+.
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv 278 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV 278 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence 9999998777666655554332211 0000 00000 0 00 0000
Q ss_pred -----------hhh---------HHhhhchhH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH---HHHHHHHHH
Q 040770 269 -----------SKV---------FWYGIKNYR-TWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLH---TAGTIAATF 324 (521)
Q Consensus 269 -----------~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~---~~~~~~~~~ 324 (521)
|+. -.+++++++ +...+++.++....++....+.|......++-++. ..++.....
T Consensus 279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~ 358 (599)
T PF06609_consen 279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPV 358 (599)
T ss_pred HHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhH
Confidence 000 024466644 55545566666666777778888888877777653 567777788
Q ss_pred HHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHH--HHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-
Q 040770 325 GMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF--CVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP- 401 (521)
Q Consensus 325 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 401 (521)
+++..+|.++.|.+..+++|-| +.++++.++..++ ++.....++....+.+.++.|++.+....+....++
T Consensus 359 ~fg~~~g~~i~g~l~~~ir~~K------w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql 432 (599)
T PF06609_consen 359 GFGSCAGAVILGLLFSKIRHIK------WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQL 432 (599)
T ss_pred HHHHHHHHHHHHHHHHHccchh------HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEe
Confidence 8888899999999998887543 3444444444333 222233345555567777888888777766666665
Q ss_pred cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 402 FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..|++..|++.|+..+.+.+|+.++..+
T Consensus 433 ~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 433 IVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred eeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4588999999999999999999988766
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-26 Score=204.21 Aligned_cols=358 Identities=12% Similarity=0.069 Sum_probs=252.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHH
Q 040770 56 SFAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLL 135 (521)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 135 (521)
.+.+.+|..............+.....+.+.|...+.+|.+.-|..++......|..+++..+|.++|++|||+.+.+..
T Consensus 71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~ 150 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF 150 (528)
T ss_pred CcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence 34466677766666666666666667778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHH
Q 040770 136 LLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKL 215 (521)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 215 (521)
+..++..++.+.++|+..+++.|.+.|+|.|+.+...++-.|..|..+|..-+-.. .++.+|.++...+.-.+...+
T Consensus 151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-- 227 (528)
T KOG0253|consen 151 LVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-- 227 (528)
T ss_pred HHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh--
Confidence 99999999999999999999999999999999888888889999999998877666 777888877766554444433
Q ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCC------hh------h-hh-------------------ccCC-
Q 040770 216 AGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGN------LG------A-LQ-------------------KKGN- 262 (521)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~------~~------~-~~-------------------~~~~- 262 (521)
||||.....+.+..+.+...++ ++|.|+-. .+ + .+ ++++
T Consensus 228 -------gwr~~l~~~~~pl~~~a~f~~w-~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~ 299 (528)
T KOG0253|consen 228 -------GWRYLLFTSSTPLMFAARFLVW-VYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES 299 (528)
T ss_pred -------hHHHHHHHHHhHHHHHHHHHhh-cccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence 9999999888775555555444 34443210 00 0 00 0000
Q ss_pred -------CccccchhhHHhhh---chhHHHHHHHHHHHHHHHHHHHhhhH-----------------HHHHHHhcC--CC
Q 040770 263 -------VNKDKFSKVFWYGI---KNYRTWVFFVLYGFSMGIELTTNNII-----------------SEFMYDRFN--LK 313 (521)
Q Consensus 263 -------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~g--~s 313 (521)
+..++.......++ .+++.+.+....+..-..+++..... |++++...+ .+
T Consensus 300 ~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s 379 (528)
T KOG0253|consen 300 DLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLS 379 (528)
T ss_pred chhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCcc
Confidence 00000011111221 11223333333332323333322221 222211100 11
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcc
Q 040770 314 LHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAAC 393 (521)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 393 (521)
...--.=..+..+....|.++.++++||+|||+ .+..++++.+++.+++....+.....+..+..-++..+.+
T Consensus 380 ~~~dYrdllitslaefPGlLIt~~iverlGRKk-------TMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f 452 (528)
T KOG0253|consen 380 VAKDYRDLLITSLAEFPGLLITGVIVERLGRKK-------TMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF 452 (528)
T ss_pred chhHHHHHHHHHHhhCCchhHHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh
Confidence 111111123556788899999999999999997 7777777777777766665555556666777888889999
Q ss_pred cccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhHh
Q 040770 394 GATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAFF 431 (521)
Q Consensus 394 ~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~~ 431 (521)
...|.+.+++ |+..|+++.|.+..+..+|+++.|.+..
T Consensus 453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~ 491 (528)
T KOG0253|consen 453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAM 491 (528)
T ss_pred eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHH
Confidence 9999999987 8899999999999999999999999853
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-26 Score=223.24 Aligned_cols=332 Identities=13% Similarity=0.063 Sum_probs=222.0
Q ss_pred HHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc-----CCcH-HHHHHHHHHHHHH
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-----GPRY-GTSFLLLLSAPAV 142 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~ 142 (521)
...++..++........+|.+.++.|+|.+++|++..+... .+..+++|+++||+ |||| .+.++.++.+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 44556666777777888999999999999999999777665 58899999999999 8775 7888888888888
Q ss_pred HHHhhc---cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCC
Q 040770 143 FCMSFV---SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGA 218 (521)
Q Consensus 143 ~~~~~~---~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~ 218 (521)
.+.++. ++++.+++..++.+++.+. .++..+++.|++|+++|+++.++...+.++|..+++.++..+...
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~------ 156 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR------ 156 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc------
Confidence 887776 4578888888888877775 668889999999999999999999888788887776655544431
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 040770 219 TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTT 298 (521)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (521)
..|||..|++.+++.++..+. .+..++.++. ++ ++ ++.+++..+.+++.+++|.++..++..++........
T Consensus 157 --~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~-~~--~~--~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~ 228 (402)
T PRK11902 157 --VLGWGNTYLLMAGLMLAGALT-TLWAPEPEVP-AR--PP--RSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA 228 (402)
T ss_pred --ccCHHHHHHHHHHHHHHHHHH-HHhcCCCccc-cc--cc--chhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence 128999999998876655443 3444432221 11 00 0111123456778889998887777666555443333
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHH-HHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHH---HHHHHhhcc-C
Q 040770 299 NNIISEFMYDRFNLKLHTAGTIAATFG-MANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGG---VFCVWLGRA-E 373 (521)
Q Consensus 299 ~~~~~~~l~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~ 373 (521)
..+.+.++.+.+|+++.+.+++....+ ++.+++.++++++.||+++|+ .+..+..+.. +.+..+... +
T Consensus 229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-------~l~~~~~~~~l~~l~~~~~~~~~~ 301 (402)
T PRK11902 229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-------SLMLFGVLQAVSNLGYWVLAVTPK 301 (402)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555677778999999999876554 468899999999999999874 2222222222 222222333 3
Q ss_pred cHHHHHHHHH----HHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhh
Q 040770 374 SLPIAVVAMV----LFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQ 427 (521)
Q Consensus 374 ~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~ 427 (521)
+.+..+...+ ..+++.+........++.+. |.+. .++.+....++..+++
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 356 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVG 356 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHH
Confidence 4444444433 34444444455555555533 4443 3444444444444333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=242.43 Aligned_cols=280 Identities=12% Similarity=0.126 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHH
Q 040770 66 HLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCM 145 (521)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 145 (521)
....+.++...+........++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+.+.++.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33445666667777778889999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcc---------------------------------------------------CHHHHHHHHHHHHhhhhh-hhhHHH
Q 040770 146 SFVS---------------------------------------------------DAQGYIAARFMIGFCLAT-FVSCQY 173 (521)
Q Consensus 146 ~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (521)
++.+ .+..++++|+++|+|.+. ++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8763 255678999999999996 788899
Q ss_pred HHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC--------CCC----CC-CchHHHHHHHHHHHHHHH
Q 040770 174 WTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG--------ATP----FT-AWRIAFFIPGWLHVIMGI 240 (521)
Q Consensus 174 ~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~--------~~~----~~-~wr~~f~~~~~~~~~~~~ 240 (521)
++.|++|+++|++++++++....+|.++|+++++.+.....+.. .+. +. +|+..|++.+++.++.++
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888877777665432110 000 11 277889999988888777
Q ss_pred HHHHhcccCCCCChh-hhh--c-cC-----CCc-------cccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040770 241 LVLTLGQDLPDGNLG-ALQ--K-KG-----NVN-------KDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISE 304 (521)
Q Consensus 241 ~~~~~~~~~p~~~~~-~~~--~-~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (521)
+.+++.++.|++..+ +.+ + +. .+. .++..+.++.+++||.++...+..++.....+.+.+|+|.
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~ 355 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK 355 (633)
T ss_pred HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555543211 100 0 00 000 0122345678899999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HHHhhhhhhHHHhhhhhcc
Q 040770 305 FMYDRFNLKLHTAGTIAATFGM-ANIFARPFGGYASDVAGRL 345 (521)
Q Consensus 305 ~l~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~ 345 (521)
|+++.+|+++.+++++.....+ +.+++.+++|+++||++.+
T Consensus 356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 9999999999999998877665 5688999999999999865
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-25 Score=212.02 Aligned_cols=343 Identities=14% Similarity=0.061 Sum_probs=231.7
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHhhhhh-hhhHHHHH
Q 040770 100 VGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF---VSDAQGYIAARFMIGFCLAT-FVSCQYWT 175 (521)
Q Consensus 100 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~-~~~~~~~i 175 (521)
.+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.+ .+++.+++++|++.|+..|. ....+-++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456889999999999999999999999999999999988888877665 47899999999999999996 66888999
Q ss_pred HhhcCCcchhhHHHHhhhhhhhhhHHHHhHH-HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCh
Q 040770 176 TIMFNGKILGLVNGCAGGWGDMGGGVTQLLM-PLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNL 254 (521)
Q Consensus 176 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~-~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 254 (521)
.|..|.+.||..-.+.+.+..+|..++..++ +-+. .....|++.+.+..+++++..++..+ .||.| +
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il--------Gt~~~W~~l~~~~~i~~~~~l~~l~~-~PESP---k 209 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL--------GTEDLWPYLLAFPLIPALLQLALLPF-LPESP---K 209 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc--------CCCcchHHHHHHHHHHHHHHHHHHhc-CCCCc---c
Confidence 9999999999999999888888887775433 2111 23337999999998886665555444 44444 2
Q ss_pred hhhhc------------------------------cCCCccc-cchhhHHhhhchhHHHHH-----HHHHHHHHHHHHHH
Q 040770 255 GALQK------------------------------KGNVNKD-KFSKVFWYGIKNYRTWVF-----FVLYGFSMGIELTT 298 (521)
Q Consensus 255 ~~~~~------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 298 (521)
.-..+ .+.++.+ +....++++++++..... .+.....+...+..
T Consensus 210 ~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai 289 (485)
T KOG0569|consen 210 YLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAI 289 (485)
T ss_pred hHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCccee
Confidence 11100 0000000 011235566665444332 22222223334444
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc---cCc-
Q 040770 299 NNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR---AES- 374 (521)
Q Consensus 299 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 374 (521)
..|...++.+ .|++..++.+.....++...+.++++.++.||+|||+ +++.+..++.+..+++.. ..+
T Consensus 290 ~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp-------Lll~~~~~~~~~~~~~~~~~~l~~~ 361 (485)
T KOG0569|consen 290 FFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP-------LLLISLSLMAVALLLMSIALFLSNS 361 (485)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544 5999999999999999999999999999999999996 444444444333333221 111
Q ss_pred --HH---HHHHHHHHHHhhhhhc-ccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhHhccc-chhH-H-HHHH-
Q 040770 375 --LP---IAVVAMVLFSMGTQAA-CGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAFFSNS-KFST-A-TGIS- 443 (521)
Q Consensus 375 --~~---~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~~~~~-~~~~-~-~~~~- 443 (521)
.| ..+++.+++.++++.. .|+.+-+.+|+ |++.|+.+.++.....++.+++-...++... ..+. . ..+.
T Consensus 362 ~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i 441 (485)
T KOG0569|consen 362 FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVI 441 (485)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 12 2234555555555554 35556666766 9999999999999999999888877754322 2221 1 1111
Q ss_pred -HHHHHHHHHhhcCCCCCCC
Q 040770 444 -LMGALTWGSMLLPPSKDPQ 462 (521)
Q Consensus 444 -~~~~~~~~~~~~~~~~~~~ 462 (521)
.+...+.++..+||+|+|.
T Consensus 442 ~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 442 PLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHHHHHHHhCcccCCCC
Confidence 2233356777889999887
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-25 Score=197.89 Aligned_cols=321 Identities=16% Similarity=0.104 Sum_probs=259.5
Q ss_pred hhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHH
Q 040770 79 TFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAAR 158 (521)
Q Consensus 79 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (521)
...++|+++.+++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.++|.++-... +.+.++.+-
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt 106 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGT 106 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999887 788899999
Q ss_pred HHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 040770 159 FMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVI 237 (521)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (521)
.+.|.|.+. ....+.+|.+.| +|+-+.++|+|....++|..+++.+.+.+.... .+||....+.+.++++
T Consensus 107 ~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~--------~gW~~aL~~WAl~all 177 (395)
T COG2807 107 LLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--------GGWRGALGFWALLALL 177 (395)
T ss_pred HHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--------ccHHHHHHHHHHHHHH
Confidence 999999995 778899999999 577899999999999999999988877777654 1899999999999887
Q ss_pred HHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH
Q 040770 238 MGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTA 317 (521)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~ 317 (521)
..++++.-. .+++....+.+ ...-..++|+|..|.+.+.+.+....+|....|+|.++.|. |+|..++
T Consensus 178 Al~~WlPq~------~r~~~~~~~~~-----~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~a 245 (395)
T COG2807 178 ALLIWLPQA------LREQAASIATK-----LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEA 245 (395)
T ss_pred HHHHHhhhc------ccccccccccc-----cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHh
Confidence 766554321 11100110000 01224578899999999999999999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHhhhhhccccc
Q 040770 318 GTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE-SLPIAVVAMVLFSMGTQAACGAT 396 (521)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 396 (521)
|.+.++..+..++.++....+.+|.+.++ . .......+..++++-+.+.+ +.+..+ .++.|++.+..++..
T Consensus 246 G~llsl~~l~~~~~~ll~P~la~R~~n~r----~--~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~la 317 (395)
T COG2807 246 GSLLSLMQLAQLPTALLIPLLARRSKNQR----P--LVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLA 317 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccc----h--HHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHH
Confidence 99999999999999999999999865553 1 22222333333333333333 222222 588999999999988
Q ss_pred ccccc-cc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 397 FGIVP-FV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 397 ~~~~~-~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..++. +. .++..+.-+|+.+.++++-..++|++
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 88765 33 67888999999999999999999998
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=221.24 Aligned_cols=358 Identities=10% Similarity=-0.047 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHH-hh--cCCCccchhhHHHHHHHHHHHHhhhhHhhhhh-cCCcHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIR-DN--LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL-IGPRYGTSFLLLLS 138 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~ 138 (521)
+.+..+++..+...+..+...+.+|.+. ++ +|++..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 3455556667777777777667777764 44 89999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcc---hhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKI---LGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
+++.++.+++++++.++++|++.|+|.|. .+...+++++++|+++ |+.++++.+...++|..+|+.+++.+....
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~- 168 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY- 168 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999996 6788899999998754 888999999999999998888877766543
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhh--hhccCCCccccc---------------------h--
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGA--LQKKGNVNKDKF---------------------S-- 269 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~---------------------~-- 269 (521)
+|++.|++.++..++..+..++..+..++.++++ .++++.+..... .
T Consensus 169 --------g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
T TIGR00924 169 --------GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIAN 240 (475)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 8999999988654444333333222221111000 000000000000 0
Q ss_pred --------------------hhHHhh--hchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH----HHHHHHH
Q 040770 270 --------------------KVFWYG--IKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHT----AGTIAAT 323 (521)
Q Consensus 270 --------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~----~~~~~~~ 323 (521)
...... .|...+..+.+...+.+..+....+.++.+..+..+.+... .+++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~ 320 (475)
T TIGR00924 241 ILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSL 320 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhh
Confidence 000001 11122333344444445555555566777766643433222 5677777
Q ss_pred HHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc---------cCcHHHHHHHHHHHHhhhhhccc
Q 040770 324 FGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR---------AESLPIAVVAMVLFSMGTQAACG 394 (521)
Q Consensus 324 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~ 394 (521)
..+..++..++..++..+++||........-+.+++++.+++++.+.. ..+.++.+...++.+++.....|
T Consensus 321 n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p 400 (475)
T TIGR00924 321 NPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISP 400 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhH
Confidence 888777777776666666666421111112235566666555555442 34788888899999999999999
Q ss_pred ccccccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 395 ATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 395 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
...+++.+. |++.||+.+|+......+|..+++.+
T Consensus 401 ~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~ 436 (475)
T TIGR00924 401 LGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYL 436 (475)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997754 89999999999999999999998887
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=221.47 Aligned_cols=332 Identities=13% Similarity=0.044 Sum_probs=226.1
Q ss_pred HHHHHHHHhhhhcc-hhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCC-cHHHHHHHHHHHHHHHHHh
Q 040770 69 WVSFFTCFISTFAA-APLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGP-RYGTSFLLLLSAPAVFCMS 146 (521)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~ 146 (521)
...++..+..+..+ +++.+.+.+++|++.+|+|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 44555566665554 556666778899999999999999999999999999999999964 7788888999989998999
Q ss_pred hccCHHHHHHHHHHHHhhhhh-hhhHHHHH----H----hhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 147 FVSDAQGYIAARFMIGFCLAT-FVSCQYWT----T----IMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
+.++++.+++.|++.|++.+. .+...++. . |......|.+.+| .+|.++|+++++.+..
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~------ 155 (418)
T TIGR00889 88 QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI------ 155 (418)
T ss_pred HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc------
Confidence 999999999999999998764 44443332 2 2222234445444 4677666666654421
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
...|+ +|++.++..++..++ .+.+||.|+.+++ ++. +.++......+..+|+|+++.+.+..++.......
T Consensus 156 ---~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~---~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 226 (418)
T TIGR00889 156 ---ELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKST---AKM-SIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQI 226 (418)
T ss_pred ---cchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccc---ccc-CHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHH
Confidence 11354 455666665554443 3444554322111 100 01111112245678889888877777776555555
Q ss_pred HhhhHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 040770 298 TNNIISEFMYDRFNLK--------LHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL 369 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (521)
...+.+.|+.+. |.+ ....+...++..+..+++.++.+++.||+|+|+ .+..+.++.++.+.++
T Consensus 227 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-------~l~~~~~~~~v~~~l~ 298 (418)
T TIGR00889 227 TNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-------VMLLSLVAWALRFGFF 298 (418)
T ss_pred HHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHH
Confidence 566778887663 544 356688888999999999999999999999985 5556666655554444
Q ss_pred hccC-c---HHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhh-hhhhHHHHhhhhh
Q 040770 370 GRAE-S---LPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTG-AGGNFGSGLTQLA 429 (521)
Q Consensus 370 ~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~-~~~~~g~~i~~~l 429 (521)
.... + .+..++..++.+++.+...+....++. ..|++.|+++.|+.+ ....+|..++|.+
T Consensus 299 ~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l 364 (418)
T TIGR00889 299 AYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL 364 (418)
T ss_pred HHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4322 1 234455667777777766666666655 458899999999997 5567888888887
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=213.15 Aligned_cols=334 Identities=14% Similarity=0.039 Sum_probs=259.4
Q ss_pred hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hh
Q 040770 91 DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FV 169 (521)
Q Consensus 91 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~ 169 (521)
++.+-+++++|++...+.+.+.+..++.|.+.||+|+|..+++|+.++..+++++++.++|+.++++|.+||+|.++ .+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999996 77
Q ss_pred hHHHHHHhhcCCcc-hhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q 040770 170 SCQYWTTIMFNGKI-LGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQD 248 (521)
Q Consensus 170 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (521)
+..+++++.+|+++ |++++|+...+.++|..+||.+|+++++.. |.+.+|++.+++.++..++.+++++.
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---------Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---------GKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---------CCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 89999999998764 899999999999999999999999998877 99999999999999988888777543
Q ss_pred CCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040770 249 LPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMAN 328 (521)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~ 328 (521)
....++ ..+ + ...+++++++|.++...................++.++.+.+..+..+.|+.+....+..
T Consensus 250 ~~~~~~--~~~------~--~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y 319 (464)
T KOG3764|consen 250 TEMDPD--STE------Q--GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSY 319 (464)
T ss_pred cccCcc--ccc------c--CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccch
Confidence 222111 000 1 134778899999998888777776667677778888888888866669999998999999
Q ss_pred HhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccc----cccccc
Q 040770 329 IFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFG----IVPFVS 404 (521)
Q Consensus 329 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~ 404 (521)
.++..+.|.+.||++..+ -.....+.+..+.+.....+.+++..+++-.+..+++.+........ ++....
T Consensus 320 ~ig~~lfg~la~k~~~~~-----wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh 394 (464)
T KOG3764|consen 320 AIGTNLFGKLADKYPHLR-----WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH 394 (464)
T ss_pred hccCchHHHHHHhcCchh-----HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh
Confidence 999999999999999432 11444555555555555666666665555555555555444433322 222222
Q ss_pred cc---chhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHHHHHH
Q 040770 405 RR---SLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISLMGAL 448 (521)
Q Consensus 405 ~~---~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~~~~~ 448 (521)
.+ ..|.++++......+|.+++|.+. ......++.|...++++.
T Consensus 395 ~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~ 442 (464)
T KOG3764|consen 395 VSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGIL 442 (464)
T ss_pred ccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHH
Confidence 23 678999999999999999999983 334445555544444333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=225.99 Aligned_cols=362 Identities=14% Similarity=0.070 Sum_probs=236.7
Q ss_pred hcchhchHHHHhhcC-----CCc--cchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHH
Q 040770 80 FAAAPLVPIIRDNLN-----LTK--TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQ 152 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~-----~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 152 (521)
...++....+.++.. .+. .+.+|+.+.+.++..++++++|+++|++|||+.++++.+++.++.+++++++|++
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~ 143 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY 143 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345556666665432 111 3458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 040770 153 GYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP 231 (521)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (521)
+++++|+++|+|.|+ ....+.+++|..|++.||...+..+....+|..++..++...... . .+||..+.+.
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-------~-~~Wr~~~~~~ 215 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-------Y-AGWRIPLGLA 215 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-------C-ccHHHHHHHH
Confidence 999999999999997 668899999999999999999999988888886663322222110 0 3899999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhhhhccC---------------CCcccc--------------------chhhHHh-h
Q 040770 232 GWLHVIMGILVLTLGQDLPDGNLGALQKKG---------------NVNKDK--------------------FSKVFWY-G 275 (521)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---------------~~~~~~--------------------~~~~~~~-~ 275 (521)
.+.+++..+. +++.||.| ++..++.+ +.+.+. .+.++.. .
T Consensus 216 ~i~~~~~~~~-~~~~pesp---~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (513)
T KOG0254|consen 216 LIPAVILALG-MLFLPESP---RWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPK 291 (513)
T ss_pred HHHHHHHHHH-HHhCCCCh---HHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcc
Confidence 9998888777 66655444 32211110 000000 0111111 1
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHH
Q 040770 276 IKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTL 355 (521)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 355 (521)
.+++.++...+..+..+........|.+.+++.. |.+... .....+.++..+++.+++.++.||+|||+ ++
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~-------ll 362 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK-------LL 362 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HH
Confidence 2233344445555555555566666777776654 665433 45555677888888888899999999986 55
Q ss_pred HHHHHHHHHHHHHhhcc------------CcHHHHHHHHHHH-Hhhhhhcccccccccccc-cccchhhhhhhhhhhhhH
Q 040770 356 WIFQTLGGVFCVWLGRA------------ESLPIAVVAMVLF-SMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNF 421 (521)
Q Consensus 356 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 421 (521)
+.+.....++++++... ...+..++..+++ ..+..+..++.+.+..|. |.+.|+.+.++.....++
T Consensus 363 l~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 363 LFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWL 442 (513)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence 55555444444433321 0122233333333 333334445566566665 889999999999999988
Q ss_pred HHHhhhhhHhccc-------chhHHHHHHHHHHHHHHHhhcCCCCCCC
Q 040770 422 GSGLTQLAFFSNS-------KFSTATGISLMGALTWGSMLLPPSKDPQ 462 (521)
Q Consensus 422 g~~i~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (521)
.+.+-...+.... .+........+....++.+++||+|++.
T Consensus 443 ~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 443 WNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 7776655432211 1111111111222225667788988887
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=210.75 Aligned_cols=392 Identities=14% Similarity=0.110 Sum_probs=263.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhc-C-------CCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNL-N-------LTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYG 130 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 130 (521)
+++.+.+.+.-++++.+.++.+.++.+.|.+...+ | .++...+.+..+..+|.++|++++|++.||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 55666677788899999999999998888877654 2 345567888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHH
Q 040770 131 TSFLLLLSAPAVFCMSFVS-------DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVT 202 (521)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig 202 (521)
+...++++.+++++++++. -.+++...|++.|+|.|+ +|...++.+|....++||...+...+..+.|...|
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 9999999999999888752 367889999999999999 88888999999999999999999999999999988
Q ss_pred HhHHHHHHHHHHHhCCCC----C--CCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccC-------------C-
Q 040770 203 QLLMPLVFEVIKLAGATP----F--TAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKG-------------N- 262 (521)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~----~--~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------~- 262 (521)
.+++-++...+.+..... + .=||..|.+.+++.+++ +..+-..||+++.+....+ .
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~----ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~ 272 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV----LYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV 272 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH----HHhhhcCCcchhHHHHhhcCHhhhhhcccccccc
Confidence 888877776664321110 0 13998888776664433 3333334666543210000 0
Q ss_pred ------------CccccchhhHHhhh---chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH--------HHH
Q 040770 263 ------------VNKDKFSKVFWYGI---KNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHT--------AGT 319 (521)
Q Consensus 263 ------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~--------~~~ 319 (521)
+.++.....+...+ .-++.+..+...++.-.+++..+.+....+.. .|+.+.. ...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~ 351 (538)
T KOG0252|consen 273 DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAE 351 (538)
T ss_pred ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHH
Confidence 00000001122222 22455666677777777777777777766654 2543322 222
Q ss_pred HHHHHH-HHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc----HHHHHHHHHHHHh-hhhhcc
Q 040770 320 IAATFG-MANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES----LPIAVVAMVLFSM-GTQAAC 393 (521)
Q Consensus 320 ~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~-~~~~~~ 393 (521)
...+.. ...+.|..+..+++|++||+. ..+.++++..+..+.+....+ .....++..+..+ +..+..
T Consensus 352 ~~~iia~~~~vPGyw~tv~~id~iGRk~-------iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn 424 (538)
T KOG0252|consen 352 GNLIIAVCSTVPGYWFTVYFIDIIGRKY-------IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN 424 (538)
T ss_pred HHHHHHHHccCCceeEEEEEeehhhhHH-------HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC
Confidence 222333 334457888899999999985 777778877777777766544 1222222222222 223333
Q ss_pred cccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhHhc-cc-----chhHHHHHHHHHHHH----HHHhhcCCCCCCC
Q 040770 394 GATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAFFS-NS-----KFSTATGISLMGALT----WGSMLLPPSKDPQ 462 (521)
Q Consensus 394 ~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~~~-~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 462 (521)
.....+.++. |.+.|+++.|+....+..|++++...+.. .+ ..+....+++++.+. +..++++|++++.
T Consensus 425 ~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~ 504 (538)
T KOG0252|consen 425 ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKS 504 (538)
T ss_pred ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccC
Confidence 3444444554 99999999999999999999999887422 22 233344454444442 3445567777765
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=216.32 Aligned_cols=359 Identities=11% Similarity=-0.013 Sum_probs=237.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcch-hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh-cCCcHHHHHHHHHH
Q 040770 61 HMRTFHLAWVSFFTCFISTFAAA-PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL-IGPRYGTSFLLLLS 138 (521)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~ 138 (521)
+++.++.++...+...+..+... .+...+.+++|++.++.+++.+.+.....+..+++|+++|| +|||++++++.+++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 34445555666666666665544 44555678899999999999999998888889999999999 99999999999999
Q ss_pred HHHHHHHhhccCHHH-HHHHHHHHHhhhhh-hhhHHHHHHhhcCCc--chhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 139 APAVFCMSFVSDAQG-YIAARFMIGFCLAT-FVSCQYWTTIMFNGK--ILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
+++.++++++++... ++++|+++|+|.|. .+...++++|.+|++ +|++++++++...++|..+|+.+++.+....
T Consensus 92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~- 170 (489)
T PRK10207 92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF- 170 (489)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 999999999877554 55899999999996 667789999999877 4578899999999999999998888887654
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCh----h-hhhccCC-----------------Cccccc----
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNL----G-ALQKKGN-----------------VNKDKF---- 268 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~----~-~~~~~~~-----------------~~~~~~---- 268 (521)
|||+.|++.++ +++.+++.+.+.++..++.. + +.+..+. ......
T Consensus 171 --------gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (489)
T PRK10207 171 --------GYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLV 241 (489)
T ss_pred --------ChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999655 44444444444332221110 0 0000000 000000
Q ss_pred -------------h--hhHHhhhchhHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHhcCCCH----HHHHHHHHHHHHH
Q 040770 269 -------------S--KVFWYGIKNYRTWVFFVL--YGFSMGIELTTNNIISEFMYDRFNLKL----HTAGTIAATFGMA 327 (521)
Q Consensus 269 -------------~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~g~s~----~~~~~~~~~~~~~ 327 (521)
. ....+.+|+|.+....+. ..+.+..+....+.++.+.++..+.+. .....+..+..+.
T Consensus 242 ~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ 321 (489)
T PRK10207 242 LIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFW 321 (489)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHH
Confidence 0 000123344444333322 222333344444566667664222211 0123333445556
Q ss_pred HHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH-------hhc---cCcHHHHHHHHHHHHhhhhhcccccc
Q 040770 328 NIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW-------LGR---AESLPIAVVAMVLFSMGTQAACGATF 397 (521)
Q Consensus 328 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (521)
.++..++.+++.||+++|+..-....-+.+++++.+++++. ... ..+.++.....++.+++.....+...
T Consensus 322 iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~ 401 (489)
T PRK10207 322 VVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGL 401 (489)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 66777788999999998852111112233344444433321 111 12456677788899999999999888
Q ss_pred cccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 398 GIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 398 ~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+++. ..|++.+|.++|+.+....+|+.++..+
T Consensus 402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l 434 (489)
T PRK10207 402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYV 434 (489)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765 6799999999999999999998888876
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=220.67 Aligned_cols=332 Identities=12% Similarity=0.046 Sum_probs=241.5
Q ss_pred hhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh----cCCc-HHHHHHHHHHHHHHHHHhhccC------H
Q 040770 83 APLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL----IGPR-YGTSFLLLLSAPAVFCMSFVSD------A 151 (521)
Q Consensus 83 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~ 151 (521)
..+.+.+.+++|+++.++|++.++..+..++..++.|+++|| +||| +.++++.+..+++.+++.+.++ .
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 345666778899999999999999999999999999999998 6774 4677888888888888877654 4
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHH
Q 040770 152 QGYIAARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229 (521)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (521)
+.+++.+++.+++.+. ..+..++..|.. ++++|++..++.+.+..+|..+++.+.+.+...+.. ..+..+||+.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~--~~~~~g~~~~~~ 177 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG--GDDKFGWFMFAL 177 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcccccHHHHHH
Confidence 5667788888888885 456778888887 568999999999888888887776665444443211 012348999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 040770 230 IPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDR 309 (521)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (521)
+.+++.++..++.++..+|.+++.+. +++++.+..+.++..+++|.++..++..++..........+.+.|.+..
T Consensus 178 i~~~l~~~~~~~~~~~~~e~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (437)
T TIGR00792 178 VLALIGVVSLIICFFGTKERYSEIPK-----NIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYV 252 (437)
T ss_pred HHHHHHHHHHHHHHcCCEecCCCCCc-----ccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeee
Confidence 99998888777766666654422111 0112233456678888999999888877777666666555555565555
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHhh
Q 040770 310 FNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA-ESLPIAVVAMVLFSMG 388 (521)
Q Consensus 310 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 388 (521)
++ ++...+.+..+..++.+++.++.++++||+|+|+ ....+..+..++++.+... ++.+...+..++.+++
T Consensus 253 ~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 324 (437)
T TIGR00792 253 LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-------LFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFG 324 (437)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH
Confidence 55 4556677777788999999999999999999875 4444555444444444333 3455556666777888
Q ss_pred hhhcccccccccccc--------cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 389 TQAACGATFGIVPFV--------SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 389 ~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+...+..+++.++. +++.+|.+.|+.+....+|..+++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 325 QNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665543 35678999999999999998888876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=200.16 Aligned_cols=320 Identities=14% Similarity=0.067 Sum_probs=221.6
Q ss_pred CccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhhhhhHHHHH
Q 040770 96 TKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWT 175 (521)
Q Consensus 96 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i 175 (521)
+..-.|.+.+.|.+++.++++.+|.++||+|||++++++++..++..++.++++|+..+.++|++.|+.-|...++.+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999777778999999999989999999
Q ss_pred HhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH----HHHHhcccCCC
Q 040770 176 TIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI----LVLTLGQDLPD 251 (521)
Q Consensus 176 ~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~----~~~~~~~~~p~ 251 (521)
+|.+++|+|+++++..+...++|.++||++|+++....... | +.+|.....+..+... ...+++ ||
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~------g-~~p~alP~~~v~i~a~~~v~~~~~~l---pE 215 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSIS------G-SYPFALPCLLVFILAAGDVTFFPWFL---PE 215 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhh------c-cCchHHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 99999999999999999999999999999998888733111 1 2222222222222111 122222 44
Q ss_pred CChhhhhccC--------C--Cccccch-hhHHhhhchhHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 040770 252 GNLGALQKKG--------N--VNKDKFS-KVFWYGIKNYRTWV-------FFVLYGFSMGIELTTNNIISEFMYDRFNLK 313 (521)
Q Consensus 252 ~~~~~~~~~~--------~--~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s 313 (521)
+-+.+.+.+. + .+..++. ..-...++|+...- +.+.+++....+..+.++...+..+.+|++
T Consensus 216 TL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~s 295 (451)
T KOG2615|consen 216 TLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYS 295 (451)
T ss_pred cccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCC
Confidence 4222211100 0 0000110 00112234433222 222222333333333334444445778999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcc
Q 040770 314 LHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAAC 393 (521)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 393 (521)
+.+.|.+.+..++.+.+.+.......+|.+.- ....+...+.++.-.++++........++....+..+......
T Consensus 296 s~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-----~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~v 370 (451)
T KOG2615|consen 296 SMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-----IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVV 370 (451)
T ss_pred hhhheeeeehhhHHHHHHHHhccccccccccc-----hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhh
Confidence 99999988888887777776666666665511 1124444555555556666666677777888888888877777
Q ss_pred cccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 394 GATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 394 ~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+....++. ..|+++||++.|+....+.++-++||.+.
T Consensus 371 t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~ 408 (451)
T KOG2615|consen 371 TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS 408 (451)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence 87777776 45899999999999999999999999985
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=203.62 Aligned_cols=357 Identities=13% Similarity=0.043 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhH--HHHHHHHHHHHhhhhH-hhhhhcCCcHHHHHHHHH-HHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNA--GVASVSGSIFSRLIMG-AVCDLIGPRYGTSFLLLL-SAP 140 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~-~~~ 140 (521)
+..+...++..++......+.+|.+.+|.|.+.+++|++ .++..+...+.+++++ +..||+||||..++.+.+ .++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 445667778888888888899999999999999999997 4666777878888884 478999999887555533 222
Q ss_pred HHHHHh---hccC-HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHH
Q 040770 141 AVFCMS---FVSD-AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKL 215 (521)
Q Consensus 141 ~~~~~~---~~~~-~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 215 (521)
.....+ ...+ ...++..-++.++..+. .+...++..|+.++++++...+....+..+|..+|+.....+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-- 160 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-- 160 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 222222 2222 33334444444455554 4566677888888888888888876666677766665555555444
Q ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHH
Q 040770 216 AGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIE 295 (521)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (521)
|||..|++.+++.++..+..+++.++.|++++ . +++..+.+++.+|+|.++......++.....
T Consensus 161 -------gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 224 (390)
T TIGR02718 161 -------GQRPAFLLVACVPLASLVCVLWLKDRAVASPE-----A----PLARRASLFRFFRRPLAWSLLALALLSAMTA 224 (390)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc-----c----chhhHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 99999999998877766665555333221110 0 0111235677888888888877777777767
Q ss_pred HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHH-HHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHH-HHHhh---
Q 040770 296 LTTNNIISEFMYDRFNLKLHTAGTIAATFGM-ANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF-CVWLG--- 370 (521)
Q Consensus 296 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 370 (521)
.....+.+.|+.+ .|+++.+.+++....++ ..+++.++.|++.||+++|+ .+..+..+.++. +....
T Consensus 225 ~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~ 296 (390)
T TIGR02718 225 VSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-------TFILGVGLAGSLALLWFAQAA 296 (390)
T ss_pred HHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 7777788889887 59999999998877764 66677899999999999875 333333322111 11111
Q ss_pred --ccCcHHHHHHHHHHHHhhhhhcccccccccc-cccc-cchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHHHHHHH
Q 040770 371 --RAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSR-RSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTATGISLM 445 (521)
Q Consensus 371 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~~~~~~ 445 (521)
..++....+...++.++..+...+..++... ..++ +.+++.+++.+...++|..++|.+. ...+..++...+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~ 376 (390)
T TIGR02718 297 FWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSG 376 (390)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 1122333333334444455555555555533 4454 8899999999999999999999883 333333333344333
Q ss_pred HH
Q 040770 446 GA 447 (521)
Q Consensus 446 ~~ 447 (521)
++
T Consensus 377 ~~ 378 (390)
T TIGR02718 377 TV 378 (390)
T ss_pred HH
Confidence 33
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=187.38 Aligned_cols=354 Identities=16% Similarity=0.119 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh-cCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL-IGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~ 143 (521)
+...++.-|.+++.....+.+..++..|.+++.++..++.+.|.+...+.++++|++.|| +|-|...++-+....+|-+
T Consensus 46 lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gql 125 (459)
T KOG4686|consen 46 LVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQL 125 (459)
T ss_pred HHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 444455555666667777788888999999999999999999999999999999999997 6888877777777777777
Q ss_pred HHhh---ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC-C
Q 040770 144 CMSF---VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG-A 218 (521)
Q Consensus 144 ~~~~---~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~-~ 218 (521)
+++. .+.+|++.++|++.|+|.-. ..+-.+++.-|+..|+.+.++|+..+...+|..+-..+.|.+.+.+.... -
T Consensus 126 iFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~ 205 (459)
T KOG4686|consen 126 IFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPG 205 (459)
T ss_pred HHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhccc
Confidence 7654 68999999999999999776 55777999999999999999999999999999999999999988875321 0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhc-cCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 219 TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQK-KGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
.++. --......+.......++.....--..+..++..++ +....++....+.+ -..|.+|.+.++.++.+...+-
T Consensus 206 ~ghT-~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pkLtdv~--~f~ppfw~~~iicv~yyva~fP 282 (459)
T KOG4686|consen 206 VGHT-LLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPKLTDVN--TFYPPFWVLVIICVLYYVAWFP 282 (459)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCccccccc--ccCccHHHHHHHHHHHHHHHHH
Confidence 1110 001111112222221111111110011111111111 11000000001111 1257899999999999988888
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHH
Q 040770 298 TNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPI 377 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (521)
+...-|.++++++|+|+..++.+.+.....+.+..++.|.++||+|++. +....+.+....+=..+.+ +.+.
T Consensus 283 Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~------~wv~~a~~~tl~~H~~l~F--t~ls 354 (459)
T KOG4686|consen 283 FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL------WWVASACILTLLGHSGLFF--TFLS 354 (459)
T ss_pred HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee------hhHHHHHHHHHHHhhhHHh--hhcc
Confidence 8899999999999999999999998888888999999999999999974 2222222222221111111 2334
Q ss_pred HHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 378 AVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 378 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.++.+.+.|+.+.......|..++ -+|.++.|+++|.++...++|-.+.|.+
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Ii 407 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPII 407 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhh
Confidence 456677888887777666777776 4588999999999999999999999987
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=205.48 Aligned_cols=353 Identities=10% Similarity=0.046 Sum_probs=246.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH
Q 040770 60 PHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA 139 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 139 (521)
++|..+...+....+.. ..+.++...+.+++++|++..+++++.++. ..+.+++++.|++.||+|+|++++++.++++
T Consensus 25 ~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 25 RRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34444443333333322 234566778899999999999999998774 4455678889999999999999999999999
Q ss_pred HHHHHHhhc------cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHH
Q 040770 140 PAVFCMSFV------SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEV 212 (521)
Q Consensus 140 ~~~~~~~~~------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 212 (521)
++.++++++ ++++.+++.|++.|+|.+. .+.+...+.+|+| ++||++.|+...+.++|.++.+. +...+
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~---l~~~l 178 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGS---IQLAF 178 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999997 6899999999999999885 6778888999995 78999999999888888864332 22222
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCC---------hhh---------------------------
Q 040770 213 IKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGN---------LGA--------------------------- 256 (521)
Q Consensus 213 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~---------~~~--------------------------- 256 (521)
+. . +|+..|++.+++.++++++.++++++.|... +++
T Consensus 179 ~~-~------~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i 251 (591)
T PTZ00207 179 FS-D------NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVI 251 (591)
T ss_pred HH-H------hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHH
Confidence 21 1 7899999999999998888888777655211 000
Q ss_pred --------------------------------h------h--------------c-cC-C--------------Cc----
Q 040770 257 --------------------------------L------Q--------------K-KG-N--------------VN---- 264 (521)
Q Consensus 257 --------------------------------~------~--------------~-~~-~--------------~~---- 264 (521)
. . + +. . ++
T Consensus 252 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (591)
T PTZ00207 252 LIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVV 331 (591)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccc
Confidence 0 0 0 00 0 00
Q ss_pred ----c---ccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH--HHHHHHHHHHHHHhhhhhh
Q 040770 265 ----K---DKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHT--AGTIAATFGMANIFARPFG 335 (521)
Q Consensus 265 ----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~ 335 (521)
+ ....+.+++.+++..+|.+.+.+++..+....+.+.+.++.+..-|.+... ..++.++.++++.+|++..
T Consensus 332 ~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~ 411 (591)
T PTZ00207 332 ETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCM 411 (591)
T ss_pred cccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHH
Confidence 0 001125666677889999999999999988888888888877654663322 2236788999999999999
Q ss_pred HHHhhhhhccccc-chh-HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhh
Q 040770 336 GYASDVAGRLFGM-RGR-LWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSG 413 (521)
Q Consensus 336 g~l~d~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 413 (521)
|++.....+|+.. |-+ ...+.+..+ +.++.+++...-+...+++..++.|++.|..+++....+.++..++-|+-+-
T Consensus 412 g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN 490 (591)
T PTZ00207 412 SYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYN 490 (591)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhh
Confidence 9998444444311 111 112222333 4444444433333257888999999999999998888888774477777666
Q ss_pred hhhhhhhHHHHhh
Q 040770 414 LTGAGGNFGSGLT 426 (521)
Q Consensus 414 ~~~~~~~~g~~i~ 426 (521)
+.....-+|..+.
T Consensus 491 ~~~~a~pigs~~~ 503 (591)
T PTZ00207 491 FCFLGSVLSAIFL 503 (591)
T ss_pred HHhHHHHHHHHHH
Confidence 6666665665554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=208.60 Aligned_cols=346 Identities=18% Similarity=0.094 Sum_probs=226.4
Q ss_pred HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-h
Q 040770 90 RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-F 168 (521)
Q Consensus 90 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~ 168 (521)
.+.+..+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|+++|++.++ .
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 355677888899999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred hhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q 040770 169 VSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQD 248 (521)
Q Consensus 169 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (521)
..+..+++|++++++|+.+..+ ......+..+++..+..+.. +||+.+++..+++++..++ +++.+|
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----------~Wr~~~~~~~~~~~~~~~~-~~l~~E 256 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----------DWRWLFWIISIPSGLFLLL-WFLPPE 256 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHH-HHccCc
Confidence 7889999999999999999999 55555555444443333322 8999999999998876665 455334
Q ss_pred CCCCChhhhhccC------------------CCccccc----------------hhhHHhhhchhHHHHHHHHHHHHHHH
Q 040770 249 LPDGNLGALQKKG------------------NVNKDKF----------------SKVFWYGIKNYRTWVFFVLYGFSMGI 294 (521)
Q Consensus 249 ~p~~~~~~~~~~~------------------~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
.| ++...+.+ ...++.. ...+...++.|++....+...+....
T Consensus 257 s~---rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 333 (521)
T KOG0255|consen 257 SP---RWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV 333 (521)
T ss_pred Ch---HHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH
Confidence 33 22111100 0000000 01123344554433333322222211
Q ss_pred HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc
Q 040770 295 ELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES 374 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (521)
. ....+.-.+....+|.+.. +.....+.....+....+...|+.|||. ....+..+.++++++..+...
T Consensus 334 ~-~~~y~gl~~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~-------~~~~~~~~~~~~~~~~~~~~~ 402 (521)
T KOG0255|consen 334 F-SLVYYGLSLNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRP-------PLFLSLFLAGIGLLLFGWLPD 402 (521)
T ss_pred H-hHHHHhhhhhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence 1 1111111122222343332 3333444477777778889999998875 666777777777766666543
Q ss_pred HH---HHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhHhcccchhHHHH---HH-HHH
Q 040770 375 LP---IAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAFFSNSKFSTATG---IS-LMG 446 (521)
Q Consensus 375 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~~~~~~~~~~~~---~~-~~~ 446 (521)
.. ..++...+..++.+..+...+.+..+ +|+..|..+.+..+....++++++|.+......+..... +. +..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~ 482 (521)
T KOG0255|consen 403 DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLAL 482 (521)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 22 34444555555555666666666554 499999999999999999999999998422221111111 11 122
Q ss_pred HH-HHHHhhcCCCCCCC
Q 040770 447 AL-TWGSMLLPPSKDPQ 462 (521)
Q Consensus 447 ~~-~~~~~~~~~~~~~~ 462 (521)
+. .+..+++|+++.+.
T Consensus 483 l~~~~~~~~lpet~~~~ 499 (521)
T KOG0255|consen 483 LLGLLSLLLLPETKGKP 499 (521)
T ss_pred HHHHHHHhcCcccCCCC
Confidence 22 33347888888776
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=187.07 Aligned_cols=360 Identities=14% Similarity=0.058 Sum_probs=271.8
Q ss_pred cCchhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHH
Q 040770 57 FAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLL 136 (521)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 136 (521)
..+++|..+....+..+.+.+.+..+++........|+ +....-|+..+|++.+....+++-|+.||+|-|...+++.+
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 34677888888888888888899999998888888889 77888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc------CHH--HHHHHHHHHHhhhhhhh-hHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHH
Q 040770 137 LSAPAVFCMSFVS------DAQ--GYIAARFMIGFCLATFV-SCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMP 207 (521)
Q Consensus 137 ~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 207 (521)
+.++|..+-..+. .++ ....+..+.+.+.-... ....+..-||++++|..+..+-..+..+|.++|.++.|
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 9999999877653 334 44556666666555432 44577888999999999999998898999999998888
Q ss_pred HHHHHHHHhCCCCCCCchH--HHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHH
Q 040770 208 LVFEVIKLAGATPFTAWRI--AFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFF 285 (521)
Q Consensus 208 ~l~~~~~~~~~~~~~~wr~--~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (521)
++...-. ..++..|.. .|+..+++..+..++..+..++.|+.+....+.... ..++.+.+++.++|+++.+..
T Consensus 198 ilV~~~~---~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~--~~~f~~si~~~~~n~~F~il~ 272 (480)
T KOG2563|consen 198 ILVPSSK---DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ--DASFPKSIKSCFKNRQFIILA 272 (480)
T ss_pred eecCCCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh--cCcHHHHHHHHHcCccHHHHH
Confidence 8765421 112336755 466566665555566666667767665543333222 334778999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHH
Q 040770 286 VLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF 365 (521)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (521)
+++....+.+++..+.+..-+... |++...+|+......++++++.++.|.+.||.++-+ ....+......++
T Consensus 273 ~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk------~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 273 ICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK------LTTLVLYLFALVG 345 (480)
T ss_pred HHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH------HHHHHHHHHHHHH
Confidence 999999988888887776555554 788889999999999999999999999999988653 1222222222222
Q ss_pred -HHHhhcc---CcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 366 -CVWLGRA---ESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 366 -~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+.... ...+.+.....++|++.....|+...+..|. .|..-++..|+.+..+++-+++-..+
T Consensus 346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~ 414 (480)
T KOG2563|consen 346 TLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFI 414 (480)
T ss_pred HHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHH
Confidence 2222221 2445666777888888888889888885544 67777888999999999888777776
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=201.77 Aligned_cols=351 Identities=12% Similarity=0.001 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh-cCCcHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL-IGPRYGTSFLLLLSAPAV 142 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~ 142 (521)
+..++...+...+..+.....++. +.+++|++.++.+++.+.+........+++|+++|| +|||++++++.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 444455555565555554444444 568899999999998888776666667899999999 599999999999999999
Q ss_pred HHHhhcc-CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcc--hhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCC
Q 040770 143 FCMSFVS-DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKI--LGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGA 218 (521)
Q Consensus 143 ~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~ 218 (521)
+++++++ +.+.++++|+++|++.|. .+...+++.|++|+++ |..++++++.+.++|..+|+.+++.+.+..
T Consensus 103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~----- 177 (500)
T PRK09584 103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY----- 177 (500)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 9998874 566777889999999996 5677789999997653 456788888888899988887777766543
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHh---cccCCCCChh-hhhccCC------------------Cccccc--------
Q 040770 219 TPFTAWRIAFFIPGWLHVIMGILVLTL---GQDLPDGNLG-ALQKKGN------------------VNKDKF-------- 268 (521)
Q Consensus 219 ~~~~~wr~~f~~~~~~~~~~~~~~~~~---~~~~p~~~~~-~~~~~~~------------------~~~~~~-------- 268 (521)
|||+.|++.++..++..+..++. .++.++.++. +.+..+. ...+..
T Consensus 178 ----g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (500)
T PRK09584 178 ----GWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVA 253 (500)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999876544433332222 2222111100 0000000 000000
Q ss_pred -------hhh---HHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--hcCCCH------HHHHHHHHHHHHHHHh
Q 040770 269 -------SKV---FWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYD--RFNLKL------HTAGTIAATFGMANIF 330 (521)
Q Consensus 269 -------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~s~------~~~~~~~~~~~~~~~~ 330 (521)
... ..+.. +++.+..+. .++....++......+.++.. ..+.+. ...+++.++..+..++
T Consensus 254 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil 331 (500)
T PRK09584 254 LGIVVIFGKEAFAMKGAA-RRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMI 331 (500)
T ss_pred HHHHHHHHHHHhhcCHHH-HHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHH
Confidence 000 00111 122222222 223333344444445555332 111111 1245566677777777
Q ss_pred hhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC---------cHHHHHHHHHHHHhhhhhcccccccccc
Q 040770 331 ARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE---------SLPIAVVAMVLFSMGTQAACGATFGIVP 401 (521)
Q Consensus 331 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (521)
..++.+++-+|.++|.+. ...+.+++++.+++++.+.... +.++.....++.+++.....|...+++.
T Consensus 332 ~~p~~~~~~~~l~~r~~~---~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~ 408 (500)
T PRK09584 332 GSPILAAIYNKMGDRLPM---PHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVA 408 (500)
T ss_pred HHHHHHHHHHHhCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 777777777777766432 2355566666666665544332 2456777888999999999999999876
Q ss_pred -cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 402 -FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 402 -~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..|++.||.++|+......+|+.++..+
T Consensus 409 ~~aP~~~rg~~~g~~~l~~a~g~~~~g~~ 437 (500)
T PRK09584 409 QLVPQRLMGFIMGSWFLTTAGAALIAGYV 437 (500)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999887777777776665
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-28 Score=242.88 Aligned_cols=373 Identities=15% Similarity=0.106 Sum_probs=234.2
Q ss_pred HHHHHHHhhhhcchhchHHHH--hhcCCC---------ccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 70 VSFFTCFISTFAAAPLVPIIR--DNLNLT---------KTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s---------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
++.+..+++....+...+... .+++.+ ..+.+++.+...+|..+|++++|+++||+|||+++.++.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 334556666555544444433 222222 234688999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc---CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 139 APAVFCMSFVS---DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 139 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
.++.++.++++ |++.+.++|+++|++.|+ .+....++.|..|+++|++..++.+.+..+|..++.+++..+....
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~- 165 (451)
T PF00083_consen 87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS- 165 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 99999999999 999999999999999996 7789999999999999999999999988888877776654442221
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccC---------------------CCccccch----
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKG---------------------NVNKDKFS---- 269 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---------------------~~~~~~~~---- 269 (521)
+...||..+++.++++++..+.. ++.||.|. +...+++ ++..++..
T Consensus 166 -----~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~---wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (451)
T PF00083_consen 166 -----DNWGWRILLIFGAIPSLLVLLLR-FFLPESPR---WLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQE 236 (451)
T ss_pred -----ccccccccccccccccccccccc-cccccccc---eecccccccccccccccccccccccccccccccccccccc
Confidence 12269999999988876654444 44455442 1110000 00000000
Q ss_pred --hhHHhhhchhH----HHHHHHHHHHHHHH-HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhh
Q 040770 270 --KVFWYGIKNYR----TWVFFVLYGFSMGI-ELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVA 342 (521)
Q Consensus 270 --~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 342 (521)
...++.++++. +...+....+.... ......+.+.++ +..+.+.. -.......+...++.+++.++.||+
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
T PF00083_consen 237 SKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF-ENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF 313 (451)
T ss_pred cceeeeeccccccccccccccccccccccccccccccccccccc-cccccccc--ccccccccccccccccccccccccc
Confidence 11233444422 22222222222222 223333444444 44466655 2233345567777888888999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHhh-----ccCc----HHHHHHHHHHHHhhhh-hcccccccccccc-cccchhhh
Q 040770 343 GRLFGMRGRLWTLWIFQTLGGVFCVWLG-----RAES----LPIAVVAMVLFSMGTQ-AACGATFGIVPFV-SRRSLGIL 411 (521)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~ 411 (521)
|||+ ....+..+.+++.+.+. ...+ ....+++..+..+++. +..+..+.+..|+ |++.|+++
T Consensus 314 GRr~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~ 386 (451)
T PF00083_consen 314 GRRK-------LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTG 386 (451)
T ss_pred cccc-------ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccc
Confidence 9996 44444444444333332 1112 1222223333333333 3445566776665 99999999
Q ss_pred hhhhhhhhhHHHHhhhhhHhccc-c---hhHHHHHHH--HHHHHHHHhhcCCCCCCC
Q 040770 412 SGLTGAGGNFGSGLTQLAFFSNS-K---FSTATGISL--MGALTWGSMLLPPSKDPQ 462 (521)
Q Consensus 412 ~g~~~~~~~~g~~i~~~l~~~~~-~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 462 (521)
.|+....+++++++.+.+..... . ......+.. ....++..+++||+++++
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence 99999999999999988743221 1 122222222 222245566789999887
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=181.15 Aligned_cols=341 Identities=18% Similarity=0.143 Sum_probs=243.1
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcC-CcHHHHHHHHHHHHHHHHHh
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG-PRYGTSFLLLLSAPAVFCMS 146 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~ 146 (521)
+...+++.++....+.|.++.+.++.|.|..|+|.+.+...+...++++++|.++||++ +|+.+.+..++.++...+..
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777888899999999999999999999999999999999999999986 67888888888888887888
Q ss_pred hccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhH-HHHHHHHHHHhCCCCCCCc
Q 040770 147 FVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLL-MPLVFEVIKLAGATPFTAW 224 (521)
Q Consensus 147 ~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~-~~~l~~~~~~~~~~~~~~w 224 (521)
..++++.+++..++..+.... .+...++..+... +++.-.|-.-.++++|.+++... +..+.... +..+.
T Consensus 87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~------~~~~~ 158 (400)
T PF03825_consen 87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL------GISGT 158 (400)
T ss_pred HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhh------ccccc
Confidence 889999988888888777664 5566666666664 34444555666668888777543 12222221 11133
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040770 225 RIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISE 304 (521)
Q Consensus 225 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (521)
.+.+++.++..++.+...+. +|+.|.+++ .+ ++.++....+..+++|+|+++...+..++.......+.++.+.
T Consensus 159 ~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~---~~--~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~ 232 (400)
T PF03825_consen 159 SLIFYIAAILSLLLAGFALF-LPKTPPKRS---AK--ESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSI 232 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHh-CCCCccccc---cC--CCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655554443333 444441111 11 1112222345567899999999888888888888888889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHH-
Q 040770 305 FMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA-ESLPIAVVAM- 382 (521)
Q Consensus 305 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 382 (521)
|+++.-|.+....+.+.++..++.++.-...+++..|+|.++ ++.++.+..++=..++... ++.+..++..
T Consensus 233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~-------ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~ 305 (400)
T PF03825_consen 233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW-------LLLLALVAYAVRWLLYAYFSDPWPFIVALQL 305 (400)
T ss_pred HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 998874488888888888888888888889999999998764 6777777777666666665 4444433333
Q ss_pred ---HHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhh-HHHHhhhhh
Q 040770 383 ---VLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGN-FGSGLTQLA 429 (521)
Q Consensus 383 ---~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~g~~i~~~l 429 (521)
.+-|+.++........++. ..|++.|+++.++++.... +|+.++..+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 3467777777777777877 4599999999999887654 566665555
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-20 Score=182.16 Aligned_cols=326 Identities=17% Similarity=0.059 Sum_probs=236.6
Q ss_pred chhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHH-HHHHHHHHHHHHHhhc-cC-HHHHHHHHHHHHhhhhh-hhhHHHH
Q 040770 99 DVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTS-FLLLLSAPAVFCMSFV-SD-AQGYIAARFMIGFCLAT-FVSCQYW 174 (521)
Q Consensus 99 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~-~~-~~~l~~~r~l~G~~~~~-~~~~~~~ 174 (521)
..++..++..+..++..++.|.++|+-|+||.++ +..++..+.+.+..+. ++ ++...+.-++.-++.+. .....++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998555554 4555566666666664 33 44344444444455554 5567799
Q ss_pred HHhhcCCcch--------------------------hhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHH
Q 040770 175 TTIMFNGKIL--------------------------GLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAF 228 (521)
Q Consensus 175 i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f 228 (521)
+.|..+++++ ++..+.-.+.+++|..+..++.-.+....... .++..+-|..+
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-~~~~~~~r~~~ 229 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-ASNTWAIRVAF 229 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-cccchhhhHHH
Confidence 9999988888 89988888888888876655443332221111 11123569999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCChhhhhcc-CCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 040770 229 FIPGWLHVIMGILVLTLGQDLPDGNLGALQKK-GNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMY 307 (521)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (521)
.+.++..++..+..++..|+.|..+..+..++ -...-++.++.+++..+.|.+..+++.+++..-...++......|..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~ 309 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT 309 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999888765311111000 01112234566777788899999999999888888889999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc--------cCcHHHHH
Q 040770 308 DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR--------AESLPIAV 379 (521)
Q Consensus 308 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 379 (521)
+.+|++..+...+..+..+.+++|.++.+++.||+|.|.. ..+.++.+...+..+...+ ..+.+.++
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-----~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-----RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 9999999999999999999999999999999999998821 1333333222221111111 44677888
Q ss_pred HHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 380 VAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 380 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+..++.|++.+..++..-++..++ |+++.+..+|++...+...++++|.++
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888887754 999999999999999999999999984
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=192.77 Aligned_cols=348 Identities=12% Similarity=-0.019 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcC-----CcHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG-----PRYGTSFLLLL 137 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~ 137 (521)
..+.++...++..++.......+.+.+.+++|++.++++...+...+.+.+-.+ +|+++||++ ||+.++++.++
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 345555666777777745555677778888999999999999999999998665 999999998 78888888877
Q ss_pred H-HHHHHHHhhccCHHHHHH-HHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHh---hhhhhhhhHHHHhHHHHHHH
Q 040770 138 S-APAVFCMSFVSDAQGYIA-ARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCA---GGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 138 ~-~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~ig~~~~~~l~~ 211 (521)
. .++....+..++...+.+ ..++.+++.+. ..++-+++.|..+ +++....+.. ....++|..+|+.+++.+..
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 354444555556554444 78899999886 6788899999998 5554433333 22334678777776666655
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCC-CChhhhhcc-------CCC---ccccchhhHHhhhchhH
Q 040770 212 VIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPD-GNLGALQKK-------GNV---NKDKFSKVFWYGIKNYR 280 (521)
Q Consensus 212 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~ 280 (521)
.. +||..|++.+++.++.. +..++.+|.++ ..++..++. ... ..++..+.++..+++|.
T Consensus 184 ~~---------~~~~~f~~~a~l~ll~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 253 (468)
T TIGR00788 184 KT---------LTRILFLITAALLLLQL-FVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLE 253 (468)
T ss_pred hc---------CcchHHHHHHHHHHHHH-HHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHH
Confidence 43 89999999988877663 33444444321 101000000 000 00111234556678888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHH
Q 040770 281 TWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360 (521)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (521)
++...+..++.+..........-.+..+..|+++...|++....+++.+++..+.+++.+|++.|+ .+.++.+
T Consensus 254 i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~-------~l~~~~~ 326 (468)
T TIGR00788 254 IAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL-------LFGVTTL 326 (468)
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH-------HHHHHHH
Confidence 887666555521111111111111233457999999999999999999999999998888888764 5555555
Q ss_pred HHHHHHHHhhc----------cCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 361 LGGVFCVWLGR----------AESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 361 ~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+++.+.... .++.+......++.+++.+........++. ..|++.+|+.+++.+.+.++|..+++.+
T Consensus 327 l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~ 406 (468)
T TIGR00788 327 LYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL 406 (468)
T ss_pred HHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence 55544432210 123334444556667776666666666665 4589999999999999999999888875
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=177.73 Aligned_cols=356 Identities=10% Similarity=0.049 Sum_probs=233.0
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhh----hcCCcHHHHHH-HHHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCD----LIGPRYGTSFL-LLLSAPAV 142 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~ 142 (521)
+....+...+.+....+.++.+.+++|.+..+.+++..+..+...+.+++.|+++| |+|||+.++++ .+...++.
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l 88 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAV 88 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHH
Confidence 34444555556666667777788999999999999999999999999999999999 59999998874 66677777
Q ss_pred HHHhhccCHHH-----------------HHHHHHHHHhhhhh-hhhHHHHHHhhcCCcch--hhHHHHhhhhhhhhhHHH
Q 040770 143 FCMSFVSDAQG-----------------YIAARFMIGFCLAT-FVSCQYWTTIMFNGKIL--GLVNGCAGGWGDMGGGVT 202 (521)
Q Consensus 143 ~~~~~~~~~~~-----------------l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~ig 202 (521)
++.+++++++. ++++-.+..++... ..+..++++|.+|+++| +.+.++.+.+.++|..+|
T Consensus 89 ~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg 168 (477)
T TIGR01301 89 ILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLG 168 (477)
T ss_pred HHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78888776532 22222233335553 55788999999998865 689999988889999888
Q ss_pred HhHHHHHH--HHHHHhCC--CCC--CCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhh-----hccCCCccccchhh
Q 040770 203 QLLMPLVF--EVIKLAGA--TPF--TAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGAL-----QKKGNVNKDKFSKV 271 (521)
Q Consensus 203 ~~~~~~l~--~~~~~~~~--~~~--~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~ 271 (521)
+.++.+.- ..+...+. .+. .+.|+.|++.+++.++..++..+..+|.|...+++. ++.++.+.+...++
T Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (477)
T TIGR01301 169 YAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGE 248 (477)
T ss_pred HHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHH
Confidence 87776541 11110000 000 157999999998888888888887777653221111 11111111111112
Q ss_pred HHhhhc--hhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhcCCCH------HHH---H-HHHHHHHHHHHhhhhhhHHH
Q 040770 272 FWYGIK--NYRTWVFFVLYGFSMGIELTTNNIISEFMY-DRFNLKL------HTA---G-TIAATFGMANIFARPFGGYA 338 (521)
Q Consensus 272 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~s~------~~~---~-~~~~~~~~~~~~~~~~~g~l 338 (521)
+.+.++ .+.++.+++..++.+.+.+.+..|...|.. +.|+-++ .+. | +....+.+...+.+++..++
T Consensus 249 i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l 328 (477)
T TIGR01301 249 LFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKL 328 (477)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 356888999999999999888888888865 4555322 111 2 33344555555666677778
Q ss_pred hhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc---------------------HHHHHHHHHHHHhhhhhcccccc
Q 040770 339 SDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES---------------------LPIAVVAMVLFSMGTQAACGATF 397 (521)
Q Consensus 339 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~g~~~~~~~~~~~ 397 (521)
.+|+|+|+ + +-.++.++.++++....+..+ .+..++.+.+.|+.....+...+
T Consensus 329 ~~~~g~~k----~--~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 329 CRGWGAGK----R--LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred HHHhccch----h--HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 88887432 1 333444444444333322111 35667777888888888888888
Q ss_pred cccc-ccc--ccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 398 GIVP-FVS--RRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 398 ~~~~-~~~--~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++++ +.+ .+..|..+|+.|.+..+...+....
T Consensus 403 al~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~ 437 (477)
T TIGR01301 403 ALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLG 437 (477)
T ss_pred HHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 8876 445 3566999999999988777666543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=189.53 Aligned_cols=332 Identities=11% Similarity=-0.020 Sum_probs=221.1
Q ss_pred chHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhh----hcCC-cHHHHHHHHHHHHHHHHHhhccC------HHH
Q 040770 85 LVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCD----LIGP-RYGTSFLLLLSAPAVFCMSFVSD------AQG 153 (521)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~ 153 (521)
+...+.+.+|+++..+|.+..+..+.-++..++.|+++| |+|| |+.++++.+..+++.+++...++ +..
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~ 108 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF 108 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence 455566778999999999999999999999999999999 6697 66677788888887666644332 334
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 040770 154 YIAARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP 231 (521)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (521)
+++..++.+++... ..+..+++.|.. ++++|.+..++...+.++|..+.+.+...+..... +.+...+|+....+.
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g--~~~~~~g~~~~~~i~ 186 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG--GGDRGFGFQMFTLVL 186 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCchhhhHHHHHHHH
Confidence 55566666777665 557778999998 68899999998777777776555544333322221 011223688888888
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcC
Q 040770 232 GWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFN 311 (521)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 311 (521)
+++.++..++.++..+|.++.+.. +.+++++.+.++.++.+++||.++.+++..++..........+.+.|.+.. .
T Consensus 187 ~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-~ 262 (473)
T PRK10429 187 IAFFIVSTIITLRNVHEVYSSDNQ---VSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-I 262 (473)
T ss_pred HHHHHHHHHHHHcCceecCCcccc---ccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-C
Confidence 777666666666555554321110 111122334556677788999988888877777666665555555444443 3
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh-----hccCcHHHHHHHHHHHH
Q 040770 312 LKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL-----GRAESLPIAVVAMVLFS 386 (521)
Q Consensus 312 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g 386 (521)
.+....+.+.....++.+++.++.+++.||+|+|+ .+.++..+..++.+.+ ....+.+..++..++.+
T Consensus 263 ~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 335 (473)
T PRK10429 263 GDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-------LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLN 335 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 35566667777777888999999999999999985 3333333322222221 11234555566667777
Q ss_pred hhhhhcccccccccccc--------cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 387 MGTQAACGATFGIVPFV--------SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.+...+..+++.++. ..+..|..+|..+....++..+++.+
T Consensus 336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666544 24556778899888888888887765
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=187.20 Aligned_cols=329 Identities=11% Similarity=0.043 Sum_probs=224.6
Q ss_pred hhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh----cCC-cHHHHHHHHHHHHHHHHHhhccC------H
Q 040770 83 APLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL----IGP-RYGTSFLLLLSAPAVFCMSFVSD------A 151 (521)
Q Consensus 83 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~ 151 (521)
..+...+.+++|++..++|.+.++..+..++..++.|+++|| +|| |+.++++.+..+++.++....++ +
T Consensus 30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 345666888899999999999999999999999999999999 776 45566777777777766555543 4
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHH
Q 040770 152 QGYIAARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229 (521)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (521)
+.+++..++.+++... ..+..++.+|+. ++++|.+..++...+..+|..+++.+...+...+... ....+|+..+.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~--~~~~g~~~~~~ 187 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG--DEQKGYFYAMM 187 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--chhhhHHHHHH
Confidence 5566666666766664 456778999988 5688999999988888888888876655554443210 11338999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 040770 230 IPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDR 309 (521)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (521)
+.+++.++..++.++..+|.++.+ ++++.+.++.++..++||.++.+++..++............+.|....
T Consensus 188 i~~ii~~v~~~~~~~~~~e~~~~~--------~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~ 259 (444)
T PRK09669 188 VMGLLGVVLFFCCFFMTKERYTPE--------VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV 259 (444)
T ss_pred HHHHHHHHHHHHHhCCeEEecCCC--------CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee
Confidence 888887776666665555432211 011233457788889999998887776665554443333333333333
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHH-HHHHhhc-cCcHHHHHHHHHHHHh
Q 040770 310 FNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGV-FCVWLGR-AESLPIAVVAMVLFSM 387 (521)
Q Consensus 310 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~ 387 (521)
.+ ++...+.+.....+..+++.++.++++||+|+|+ ....+.++..+ .+.+... .++.+..++..++.++
T Consensus 260 ~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 331 (444)
T PRK09669 260 LL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-------AFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNF 331 (444)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 33 3334445555666778888889999999999875 33333332222 2222222 3456666777788899
Q ss_pred hhhhcccccccccccc--------cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 388 GTQAACGATFGIVPFV--------SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 388 ~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+...+..+++.+++ ..+..|...|+.+....+|..+++.+
T Consensus 332 ~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i 381 (444)
T PRK09669 332 IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAV 381 (444)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888877654 23445777888888888888888775
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-21 Score=189.43 Aligned_cols=329 Identities=12% Similarity=0.063 Sum_probs=252.8
Q ss_pred hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhh----hcCCcH-HHHHHHHHHHHHHHHHhhc-c-------C
Q 040770 84 PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCD----LIGPRY-GTSFLLLLSAPAVFCMSFV-S-------D 150 (521)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~~~~~~~~~~-~-------~ 150 (521)
.+.+.+.+.+|+++..+|.+..+..+..++..|+.|.++| |+|||| .++++.+..+++.+++... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 5567778888999999999999999999999999999999 899655 4556888888888887766 4 2
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcC-CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCC-CCchHH
Q 040770 151 AQGYIAARFMIGFCLAT-FVSCQYWTTIMFN-GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPF-TAWRIA 227 (521)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~-~~wr~~ 227 (521)
...+++..++..++... ..+..++..|..+ +++|.+..++...+..+|..+...+.+.+...+.. .+. .+|++.
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~---~~~~~~~~~~ 179 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG---GDTSNGYRWM 179 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---CccchHHHHH
Confidence 23356666667777775 5577899999996 57899999999888888887666666666644421 111 279999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 040770 228 FFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMY 307 (521)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (521)
.++.+++.++..++.++..+|.+++ .++++++.+..+.++..++||.++.+.+..++............+.|.+
T Consensus 180 ~~v~~iv~~v~~~i~~~~~ke~~~~------~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~ 253 (428)
T PF13347_consen 180 ALVLAIVGLVFFLITFFFVKERSVE------VTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFT 253 (428)
T ss_pred HHHHHHHHHHHhhhhhheeeecccc------ccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 9999999888888777776651111 1112233445677889999999999999988887777777777888888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHH
Q 040770 308 DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA--ESLPIAVVAMVLF 385 (521)
Q Consensus 308 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 385 (521)
...|.+ ...+.+.....++.+++.++.++++||+|+|+ ....+..+.+++.+++.+. ++.+..++..++.
T Consensus 254 ~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 325 (428)
T PF13347_consen 254 YVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-------VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILA 325 (428)
T ss_pred HHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-------ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 877777 55667777888999999999999999999987 5555555565555555544 4888889999999
Q ss_pred Hhhhhhcccccccccccc--------cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 386 SMGTQAACGATFGIVPFV--------SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 386 g~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
|++.+......+++.+|+ .++..|...|+.+....++..+++.+
T Consensus 326 gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 326 GIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 999999988888887765 24557899999999988888877775
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-19 Score=169.66 Aligned_cols=364 Identities=16% Similarity=0.153 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHhhhhcchhchHHHHhh-cCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH--HH
Q 040770 64 TFHLAWVSFFTCFISTFAAAPLVPIIRDN-LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS--AP 140 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~--~~ 140 (521)
.++.....++..++.+....|..+...++ .|+|.+++|.+.++..+...+.+++.|.+.||+|.||-++....+. ..
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~ 87 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLF 87 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 34555666677777777777777776664 8999999999999999999999999999999999666555443322 22
Q ss_pred HH-HHHhhc----cCHH-HHHHHHHHHHhhhh-hhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 141 AV-FCMSFV----SDAQ-GYIAARFMIGFCLA-TFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 141 ~~-~~~~~~----~~~~-~l~~~r~l~G~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+. +...+. .|.+ ..+++-+..|+... +.+..-+++.++. ++.+.=.|-.-.++++|.+++..+++.+.+.
T Consensus 88 ~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i- 164 (412)
T PF01306_consen 88 GPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI- 164 (412)
T ss_dssp HHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-
Confidence 22 222222 2322 22222222333333 2344455555544 2333334445556688998888888877764
Q ss_pred HHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHH
Q 040770 214 KLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMG 293 (521)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (521)
+-+..||+....+++..++.++..++.+++......++ .++++...++..+++|+|++|.+.+.......
T Consensus 165 ---------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~ 234 (412)
T PF01306_consen 165 ---------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG-AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAA 234 (412)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-S------HHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred ---------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 45778888777666666555555444443322111111 11112224567889999999999888777767
Q ss_pred HHHHHhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhh
Q 040770 294 IELTTNNIISEFMYDRF---NLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG 370 (521)
Q Consensus 294 ~~~~~~~~~~~~l~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (521)
.+..+....+.|....+ +.+....|.+.++..+..++.-.+..++.+|+|.|+ .+.++..+..+=.....
T Consensus 235 ~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~-------~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 235 IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN-------LLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-------HHHHHHHHHHHHHHHHh
Confidence 77777767777776543 345567888999999999999999999999999986 67677777777777888
Q ss_pred ccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhh-hhhhhHHHHhhhhh-HhcccchhHHHHHHHHHH
Q 040770 371 RAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLT-GAGGNFGSGLTQLA-FFSNSKFSTATGISLMGA 447 (521)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~-~~~~~~g~~i~~~l-~~~~~~~~~~~~~~~~~~ 447 (521)
+.++++.+.+.-.+-++-........+-++. ..+++..++...+. +....+|..+.+.+ +...|.++....+.+++.
T Consensus 308 ~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~ 387 (412)
T PF01306_consen 308 FATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGL 387 (412)
T ss_dssp T--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHH
Confidence 8889888888888888777777777777766 55888888888885 56666777776665 555565555444443333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-20 Score=172.76 Aligned_cols=283 Identities=11% Similarity=0.039 Sum_probs=198.6
Q ss_pred hhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh------CC
Q 040770 146 SFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA------GA 218 (521)
Q Consensus 146 ~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~------~~ 218 (521)
+...+|+.++++-++.|.|.+. .+.++.++++..+++++.+.+++.+.+.++|..++|+++..+....... ..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3457899999999999999996 7899999999999999999999999999999988888777655311000 00
Q ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 040770 219 -TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELT 297 (521)
Q Consensus 219 -~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (521)
.+..+|+++|++.+.+.++..++..+. +.||.++++.++... ++. ...+..+++|.++...+..++..+...+
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~--~~p~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~f~yvg~e~~ 158 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFL--PLPELQEADVARVSS--GDT--TQKTSAFQFTHLVLGALGIFVYVGAEVS 158 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCCCCccccccccc--ccc--cchhhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 001279999998877756555443332 234322211111110 111 1123456788888888888888888999
Q ss_pred HhhhHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcH
Q 040770 298 TNNIISEFMYDR--FNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESL 375 (521)
Q Consensus 298 ~~~~~~~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (521)
...|++.|+.+. +|+++.++++..+.+..+.++|+++++++.||+++|+ .+.++..+..++.++....++.
T Consensus 159 ~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~-------~l~~~~~l~~~~~~l~~~~~~~ 231 (310)
T TIGR01272 159 AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR-------YLAFNAFLAVLLSIGAALTHGY 231 (310)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999854 6999999999999999999999999999999999875 4444444444444444343333
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh-HhcccchhHHHHHH
Q 040770 376 PIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA-FFSNSKFSTATGIS 443 (521)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l-~~~~~~~~~~~~~~ 443 (521)
. .....++.|++.+..+|...+...+..++..+++.++. ..+.+|+.+.|.+ ....|.++....+.
T Consensus 232 ~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 232 V-AMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 3 33456678899999999988876654344566777775 5677999999986 44445444444444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-19 Score=173.15 Aligned_cols=351 Identities=12% Similarity=0.063 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc-CCcHHHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-GPRYGTSFLLLLSAP 140 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~ 140 (521)
+.+..++...+...+..+.....+|.+ .+++|++..+.+.+.+.+.....++.+++|+++||+ |||++++++.++..+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l 88 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI 88 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 344445555556666666555556654 567899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhcc-CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCc--chhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 040770 141 AVFCMSFVS-DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGK--ILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA 216 (521)
Q Consensus 141 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~ 216 (521)
+.+++++.+ +...++++..+.++|.|. .+...++++|.+|++ +|..++++.+...++|..++|.+.+.+....
T Consensus 89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--- 165 (493)
T PRK15462 89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--- 165 (493)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 988776543 233344444555566665 455678899999875 7999999999999999988887777765533
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHhcccC-CCC---ChhhhhccCCCcccc---------------------chhh
Q 040770 217 GATPFTAWRIAFFIPGWLHVIMGILVLTLGQDL-PDG---NLGALQKKGNVNKDK---------------------FSKV 271 (521)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~-p~~---~~~~~~~~~~~~~~~---------------------~~~~ 271 (521)
||++.|.+.++. .+.+++.+++.++. ++. ++++.++ ++.. ..+.
T Consensus 166 ------Gw~~~F~iaaig-m~l~li~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
T PRK15462 166 ------SWAMGFGLAAVG-MIAGLVIFLCGNRHFTHTRGVNKKVLRA----TNFLLPNWGWLLVLLVATPALITVLFWKE 234 (493)
T ss_pred ------ChHHHHHHHHHH-HHHHHHHHHHhhhhhccCCCCCCCCchh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987664 44444444432211 111 0100000 0000 0000
Q ss_pred --------------------HHhhh---chhHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHH
Q 040770 272 --------------------FWYGI---KNYRTWVFF---VLYGFSMGIELTTNNIISEFMYDR-----FNLKLHTAGTI 320 (521)
Q Consensus 272 --------------------~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~ 320 (521)
.+... .+++.+... +...+++..+.-..+-+..|..+. +|+. ....++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~ 313 (493)
T PRK15462 235 WSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMF 313 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHH
Confidence 00000 011222211 111122222333333344444332 2221 124455
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhcc-cccchhHHHHHHHHHHHHHHHHHhhc----c-----CcHHHHHHHHHHHHhhhh
Q 040770 321 AATFGMANIFARPFGGYASDVAGRL-FGMRGRLWTLWIFQTLGGVFCVWLGR----A-----ESLPIAVVAMVLFSMGTQ 390 (521)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~g~~~~ 390 (521)
.++..+.-++.+++.+++-.|..|| +....+.+ ..+++++.+++++++.. . .+.++++...++.+++.-
T Consensus 314 qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K-fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl 392 (493)
T PRK15462 314 QSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK-FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL 392 (493)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 6677777777777777776666432 21222222 33455555555544421 1 255667788888999999
Q ss_pred hcccccccccccc-cccchhhhhhhhhhhh-hHHHHhhhhh
Q 040770 391 AACGATFGIVPFV-SRRSLGILSGLTGAGG-NFGSGLTQLA 429 (521)
Q Consensus 391 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~-~~g~~i~~~l 429 (521)
+..|+..++++++ |++.+|..+|+..... .+|+.++..+
T Consensus 393 ~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~ 433 (493)
T PRK15462 393 FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVI 433 (493)
T ss_pred HHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998866 8899999999986644 5777777665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=165.73 Aligned_cols=335 Identities=14% Similarity=0.056 Sum_probs=259.2
Q ss_pred chhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh----cCC-cHHHHHHHHHHHHHHHHHhhccC------
Q 040770 82 AAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL----IGP-RYGTSFLLLLSAPAVFCMSFVSD------ 150 (521)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------ 150 (521)
...++-.+.+.+|+++..+|.+..+.-+--++..|+.|.+.|| +|| |+.++++.+..++.+.++-.+++
T Consensus 32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k 111 (467)
T COG2211 32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK 111 (467)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence 3344556777889999999999999999999999999999996 785 56667788999999998887763
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHH
Q 040770 151 AQGYIAARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAF 228 (521)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f 228 (521)
....++...+.+++... ..+..++.+|.. +++||.+..++-+.+.++|..+..++.+.+...+... +...||+...
T Consensus 112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~--~~~~g~~~~~ 189 (467)
T COG2211 112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG--DKALGYQGTA 189 (467)
T ss_pred hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhhHHHHH
Confidence 44566677888888885 557778888888 5789999999999999999888777776666655322 1134899999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 040770 229 FIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYD 308 (521)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (521)
++.++++.+..+.+++-.+|++.+... .+...+.+..+.+...++|+.+...++...+.........+....|.+.
T Consensus 190 ~~~~vi~~i~~l~~~~~v~ER~~~~~~----~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y 265 (467)
T COG2211 190 LVLGVIGVILLLFCFFNVKERVVETQP----TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY 265 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcccc----CcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE
Confidence 999998888888888877776542111 1112344455667788999999999998888877777777777888887
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC--cHHHHHHHHHHHH
Q 040770 309 RFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE--SLPIAVVAMVLFS 386 (521)
Q Consensus 309 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 386 (521)
..|.+.....+.......+.+++.++..++.+|+|+|+ +..++.++..++.+++.+.+ +.+..++..++.+
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-------~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~ 338 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-------LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAG 338 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH
Confidence 78888888888888888888888999999999999986 55566666666655555544 5677777778999
Q ss_pred hhhhhcccccccccccc--------cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 387 MGTQAACGATFGIVPFV--------SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.+...+..++++++. ..|..|...|...++.-+|..++..+
T Consensus 339 ~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 339 VGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988765 45667888999888888887777654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=174.95 Aligned_cols=326 Identities=11% Similarity=0.039 Sum_probs=206.5
Q ss_pred chHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc----CCcHHH-HHHHHHHHHHHHHH-hh----ccC--HH
Q 040770 85 LVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI----GPRYGT-SFLLLLSAPAVFCM-SF----VSD--AQ 152 (521)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~-~~----~~~--~~ 152 (521)
+.+.+.+.+|++..++|.+.+...+..++..++.|+++||. |||+.. +++.+...+..++. .. +++ .+
T Consensus 31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 44567778899999999999999999999999999999996 766644 55555454444443 21 122 23
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhh-hHHHHhHHHHHHHHHHHhCCCCCCCchHHHH
Q 040770 153 GYIAARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMG-GGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229 (521)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G-~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (521)
.+++..++.+++.+. .++..++..+.. ++++|.+..++-..+.++| ..++..++|.+....... ...+|.....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~---~~~~~~~~~~ 187 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEE---MVSVYHFWTI 187 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---hhhhHHHHHH
Confidence 344455667777775 446666667666 4467888777665444443 233334444444321100 0001221112
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 040770 230 IPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDR 309 (521)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (521)
+.++++++..++.+.. .||+.+.+ .++....+.++.+++||.++...+..++.+........+.+.|+++.
T Consensus 188 ~~~v~~~~~~~~~~~~---~~e~~~~~------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (448)
T PRK09848 188 VLAIAGMVLYFICFKS---TRENVVRI------VAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV 258 (448)
T ss_pred HHHHHHHHHHHHHHcC---cEeccCCC------ccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee
Confidence 2233322222222222 23321111 11123456678899999999988888888777777777778888888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC--cHHHHHHHHHHHHh
Q 040770 310 FNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE--SLPIAVVAMVLFSM 387 (521)
Q Consensus 310 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 387 (521)
+|.++...++......++.+++.++.+++.||+++|+ .+.++.++..++.+.+.+.+ +.+...+..++.++
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~-------~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~ 331 (448)
T PRK09848 259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN-------TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASI 331 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 8887766666555556677888999999999999875 45555555544444443332 45555566777888
Q ss_pred hhhhcccccccccccc-c-------ccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 388 GTQAACGATFGIVPFV-S-------RRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 388 ~~~~~~~~~~~~~~~~-~-------~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+...+...++..+. + .+..|...|+.+....+|..+++.+
T Consensus 332 G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i 381 (448)
T PRK09848 332 GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI 381 (448)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777765544 2 2456999999999999988888775
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-18 Score=156.45 Aligned_cols=325 Identities=14% Similarity=0.074 Sum_probs=242.0
Q ss_pred cchhhHHHHHHHHHHHHhhhhHhhhhhcCCc-HHHHHHHHHHHHHHHHHhhccC--HHH-HHHHHHHHHhhhhh-hhhHH
Q 040770 98 TDVGNAGVASVSGSIFSRLIMGAVCDLIGPR-YGTSFLLLLSAPAVFCMSFVSD--AQG-YIAARFMIGFCLAT-FVSCQ 172 (521)
Q Consensus 98 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~~~~~~~~~~~~~~~~~~~~~--~~~-l~~~r~l~G~~~~~-~~~~~ 172 (521)
+..+...++..+..++.+++.|.++|+.|+| +.+-+...+..++..+..++++ ++. .++..++..++... .....
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 4567788899999999999999999999955 5555666666777777777765 444 44456666777665 56777
Q ss_pred HHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHh-------CC--CCCCCchHHHHHHHHHHHHHHHHHH
Q 040770 173 YWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLA-------GA--TPFTAWRIAFFIPGWLHVIMGILVL 243 (521)
Q Consensus 173 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~-------~~--~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (521)
+++.+..++++-++..++-.....+|+.+.-++.-......+.. ++ .+...=|..+.+.++-.++..+..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 99999999999898888887777888876554321111110000 00 1223568899999999888888888
Q ss_pred HhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHH
Q 040770 244 TLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAAT 323 (521)
Q Consensus 244 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~ 323 (521)
+..++.++.... ..+.-...-++.++.++++.+++.+..+.+..++..-...+.......|....+|++..+..++...
T Consensus 218 ~~v~~~~~~~~~-~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~ 296 (438)
T COG2270 218 LNVHDAEKISSP-PPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIA 296 (438)
T ss_pred hccccccccccc-chHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 887776643200 0000011122345677888888899999999988888888888888899998899999999999999
Q ss_pred HHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-c
Q 040770 324 FGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-F 402 (521)
Q Consensus 324 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~ 402 (521)
..+.+++|+++.|++.||+|.|. ++..+.++..+..+...+.......+++..++|++.+..+...-++.. .
T Consensus 297 ~~vvA~lg~ii~g~Ld~rfg~k~-------vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~l 369 (438)
T COG2270 297 LSVVAALGAIIAGFLDERFGSKP-------VLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARL 369 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCCce-------eehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 99999999999999999999985 555555555555555445555666677778889999888888888866 5
Q ss_pred ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 403 VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+|+++.+...|+++..+....+++|++.
T Consensus 370 vp~~k~~~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 370 VPKGKEGRFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred CCCccccceeehhhhhhhHHHHHHHHHH
Confidence 5999999999999999999999999984
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-17 Score=161.98 Aligned_cols=327 Identities=10% Similarity=-0.009 Sum_probs=209.5
Q ss_pred hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh----cCCc-HHHHHHHHHHHHHHHHHhhccC------HH
Q 040770 84 PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL----IGPR-YGTSFLLLLSAPAVFCMSFVSD------AQ 152 (521)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~ 152 (521)
.++..+.+.+|+++..+|.+..+.-+.-++..|+.|.++|| +||| +.++++.+..+++.+++-..++ ..
T Consensus 31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 45556778889999999999999999999999999999996 7875 5555677888888777655443 34
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHHhhcC-CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHH
Q 040770 153 GYIAARFMIGFCLAT-FVSCQYWTTIMFN-GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFI 230 (521)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (521)
.+++.-++..++... ..+..++..|..+ +++|.+..++...+.++|..+++++...+...... .+...+|+....+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~--~~~~~g~~~~~~i 188 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG--DNKPLGFQGGIAV 188 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CchhhhHHHHHHH
Confidence 456666677777775 4577788999885 78999999999988888887777665544443321 0112378888888
Q ss_pred HHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Q 040770 231 PGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRF 310 (521)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (521)
.+++.+++.++.+...+|.++.+ +++.+..+.++..++|+.++.+....++..............|.....
T Consensus 189 ~~ii~~i~~~i~~~~~kE~~~~~---------~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~ 259 (460)
T PRK11462 189 LSVVAFMMLAFCFFTTKERVEAP---------PTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL 259 (460)
T ss_pred HHHHHHHHHHHHHhcceeccCCC---------ccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc
Confidence 88876666655555544432211 112234567788889988877766655554444433333333443334
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHH-HHHHhhccC-cHHHHHHHHHHHHhh
Q 040770 311 NLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGV-FCVWLGRAE-SLPIAVVAMVLFSMG 388 (521)
Q Consensus 311 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~ 388 (521)
|. +...+.+.....++.+++.+++++++||+++|+ ....+..+..+ .++++.... +.+..++..++.+++
T Consensus 260 g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 331 (460)
T PRK11462 260 GT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-------IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVL 331 (460)
T ss_pred CC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 43 334455666778888999999999999999874 22212121111 222222222 233344445556666
Q ss_pred hhhccccccccccccc--------ccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 389 TQAACGATFGIVPFVS--------RRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 389 ~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+...+..+++.++.. .+..|..++.......+|..+++.+
T Consensus 332 ~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i 380 (460)
T PRK11462 332 HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL 380 (460)
T ss_pred HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555566655442 3344555666667777777666654
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.8e-17 Score=154.67 Aligned_cols=260 Identities=13% Similarity=0.027 Sum_probs=178.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhh--cCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCC-cHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDN--LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGP-RYGTSFLL 135 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~ 135 (521)
+.+||.+++..+..++.......+.+..-++.++ .+.+.+..|++.++..++.+++++.+|+...|.+. |+.++.+.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 5678888888888888888887776666555555 67778889999999999999999999999999996 88899999
Q ss_pred HHHHHHHHHH-hh---cc-CHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHH
Q 040770 136 LLSAPAVFCM-SF---VS-DAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVF 210 (521)
Q Consensus 136 ~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 210 (521)
++..++.++. ++ .+ .-+.++++|++.|+|.+.....-+|+++....++|.++++....+..+|..+||.+.+.+.
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 9999999887 33 23 6788999999999999998999999999999999999999998877888888887777766
Q ss_pred HHHHHh---CC-CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhH-HHHHH
Q 040770 211 EVIKLA---GA-TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYR-TWVFF 285 (521)
Q Consensus 211 ~~~~~~---~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 285 (521)
...... .. ..++-+..+-|+.+++.++..++.+++.+|.+....++..++.++++ +-.+..+..--++. .+.+.
T Consensus 190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~vc~ 268 (488)
T KOG2325|consen 190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEK-SDIEKVKKPKLDWVAVLVCI 268 (488)
T ss_pred hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhc-cchhhhccCChhHHHHHHHH
Confidence 654210 00 01112345667888888888888888777755433222111110001 10111122111222 23333
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHH
Q 040770 286 VLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGT 319 (521)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~ 319 (521)
+..+..........+..+.+....++++..++-.
T Consensus 269 ~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~ 302 (488)
T KOG2325|consen 269 FLRFVVNFIATTIETLSSALTMVMYGWTGSEAVL 302 (488)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhccccchHHH
Confidence 3333344444444555566666666776554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-15 Score=139.08 Aligned_cols=320 Identities=14% Similarity=0.082 Sum_probs=216.9
Q ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcC-----CcHHHHH-HHHHHHHHHHHHhhc-----c-------
Q 040770 88 IIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG-----PRYGTSF-LLLLSAPAVFCMSFV-----S------- 149 (521)
Q Consensus 88 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~------- 149 (521)
.+..|++++..-.+.+.++..+... ..+.+|+.+|+.+ ||..+++ +.++...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4667899999999999988888775 6889999999998 7766554 556666655554432 2
Q ss_pred CH--HH--HHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCc
Q 040770 150 DA--QG--YIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAW 224 (521)
Q Consensus 150 ~~--~~--l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~w 224 (521)
+. +. ..+.-.+.|+|.+. .++..++++|..|+++|+++.++...+.-+|.+++.++.+.+..- +..-
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~--------~s~~ 155 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP--------FSPE 155 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc--------cCHH
Confidence 22 22 33445667777775 668889999999999999999999998888887776544433321 2122
Q ss_pred hHH--HHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH
Q 040770 225 RIA--FFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNII 302 (521)
Q Consensus 225 r~~--f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (521)
|.. +...+++.++..++..+- .|.+.++ ..+..++++..+.+.+++...+|+...+....++....++.-...+
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~wg-~E~r~~~---~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iL 231 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALWG-QEPRRSR---RAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVIL 231 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cccCCcc---cccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHc
Confidence 322 223333333333333332 1211111 1123344455666778888888888888888887777777777788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh-hhcccccchhHHHHHHHHHHHHHH---HHHhhccCcHHHH
Q 040770 303 SEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDV-AGRLFGMRGRLWTLWIFQTLGGVF---CVWLGRAESLPIA 378 (521)
Q Consensus 303 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 378 (521)
-+|--+.+|++..+...+....+.+..+|-.+.|++..| .++++ ...+++..+.++ +++.....+.+.+
T Consensus 232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~-------~a~~G~~~~~~~f~lii~a~~~~~~~~~ 304 (403)
T PF03209_consen 232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR-------TAALGCLLGALAFALIILAGPLGSPWLF 304 (403)
T ss_pred CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 888889999999999999999999999999999988763 33332 233333333333 3334455678888
Q ss_pred HHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhh
Q 040770 379 VVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQ 427 (521)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~ 427 (521)
....+++|++.+.......+..-+ ..++..|..+|.....+.++..++.
T Consensus 305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~ 354 (403)
T PF03209_consen 305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGT 354 (403)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 899999999988877666555443 4678889999998887774443333
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-19 Score=177.47 Aligned_cols=277 Identities=14% Similarity=0.111 Sum_probs=3.0
Q ss_pred HHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV 148 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 148 (521)
++..++..+........+..+++.|+++.++.|++.+.+-++..+..++..++.+|..|-+.+-++.++++++++++++=
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 44444445555556678899999999999999999999999999999999999999999999999999999999987751
Q ss_pred ----c----------------------------------------------CHHHHHHHHHHHHhhhhh-hhhHHHHHHh
Q 040770 149 ----S----------------------------------------------DAQGYIAARFMIGFCLAT-FVSCQYWTTI 177 (521)
Q Consensus 149 ----~----------------------------------------------~~~~l~~~r~l~G~~~~~-~~~~~~~i~~ 177 (521)
. -++.++++.++.|+|... ++.+.+|+=|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 0 134578899999999995 8899999999
Q ss_pred hcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCC------------CCC-CchHHHHHHHHHHHHHHHHHHH
Q 040770 178 MFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGAT------------PFT-AWRIAFFIPGWLHVIMGILVLT 244 (521)
Q Consensus 178 ~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~------------~~~-~wr~~f~~~~~~~~~~~~~~~~ 244 (521)
..++++-+..+|+..+...+|-++|.++++.+.....+.... .|- .|-.-|++.+++.++.++..++
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998888888888887776654322111 111 3777788888888888888888
Q ss_pred hcccCCCCChh----h--hhc------cC---C-------CccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhH
Q 040770 245 LGQDLPDGNLG----A--LQK------KG---N-------VNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNII 302 (521)
Q Consensus 245 ~~~~~p~~~~~----~--~~~------~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (521)
+.++.|++.+. + .++ +. . +..+++.+.++++++||.+....+..........++.+++
T Consensus 249 FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~ 328 (539)
T PF03137_consen 249 FPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFL 328 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766110 0 000 00 0 0113345667888999999999999999888899999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH-HHHHhhhhhhHHHhhhhhcc
Q 040770 303 SEFMYDRFNLKLHTAGTIAATFG-MANIFARPFGGYASDVAGRL 345 (521)
Q Consensus 303 ~~~l~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~ 345 (521)
|.|++.+|+.++..++++..... .+.++|.+++|++.+|++-+
T Consensus 329 pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~ 372 (539)
T PF03137_consen 329 PKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS 372 (539)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence 99999999999999988775443 46778889999999998654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-14 Score=137.25 Aligned_cols=358 Identities=13% Similarity=0.013 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHHhhhhcch-hchHHHHhhcC----CCccchhhHHHHHHHHHHHHhhhhHhhhhhc-CCcHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAA-PLVPIIRDNLN----LTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-GPRYGTSFLLL 136 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~ 136 (521)
+.+..++..-+..-++.+... ++.-.+..+++ ++.++..-+.+.|..-.-+..+++|+++||+ |+|+++..+.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 445555666666666655543 44455566666 9988888788888777778999999999996 99999999999
Q ss_pred HHHHHHHHHhhcc--CHHHHHHHHHHHHhhhhhh-hhHHHHHHhhcCCc--chhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 137 LSAPAVFCMSFVS--DAQGYIAARFMIGFCLATF-VSCQYWTTIMFNGK--ILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
++.+|.++.+.+. +...++++-++.++|.|.+ +-...++.|.+|++ +|-..++++..+.++|+.++|++.+.+..
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999999984 7889999999999999975 46678999999765 47788899999999999888888777776
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCC---h-hhhhccCCCc------------------cccch
Q 040770 212 VIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGN---L-GALQKKGNVN------------------KDKFS 269 (521)
Q Consensus 212 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~---~-~~~~~~~~~~------------------~~~~~ 269 (521)
.. ||...|.+.++-..+..+..++..+....+. . ...+...... ..+.+
T Consensus 181 ~~---------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (498)
T COG3104 181 NY---------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTF 251 (498)
T ss_pred hh---------CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 9999999887765554444444332211110 0 0000000000 00000
Q ss_pred hh-------------HHhhh------c-hhHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHH
Q 040770 270 KV-------------FWYGI------K-NYRTWVFF---VLYGFSMGIELTTNNIISEFMYDR-----FNLKLHTAGTIA 321 (521)
Q Consensus 270 ~~-------------~~~~~------~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~ 321 (521)
.. +.+.+ . +++.+..+ +....++..+....+.+..|..+. +|++ ....+..
T Consensus 252 ~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQ 330 (498)
T COG3104 252 SGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQ 330 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHH
Confidence 00 00000 1 11222222 222222222222333344443322 2211 2334566
Q ss_pred HHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHHHhhhhh
Q 040770 322 ATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA----------ESLPIAVVAMVLFSMGTQA 391 (521)
Q Consensus 322 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~ 391 (521)
++..+.-++..++..++..+.+++...-..-.-..+++.+++++++++... .+.++.+...++.+++.-+
T Consensus 331 slNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~ 410 (498)
T COG3104 331 SLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELF 410 (498)
T ss_pred hhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 677777777888888888885554311111112334444444444443322 2567788888999999999
Q ss_pred cccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 392 ACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 392 ~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
..|...+++. ..|+...+..+++.......|..++..+.
T Consensus 411 iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va 450 (498)
T COG3104 411 ISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVA 450 (498)
T ss_pred hCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceec
Confidence 9999998877 45888889999988887777777777663
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=152.54 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
+.++.+..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|..|-+.+-++.+++++++++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll 178 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLL 178 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHH
Confidence 34455556666666666677888999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc--------------------c-----------------------------C--HH-HHHHHHHHHHhhhhh-hhhH
Q 040770 145 MSFV--------------------S-----------------------------D--AQ-GYIAARFMIGFCLAT-FVSC 171 (521)
Q Consensus 145 ~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~-~~~~ 171 (521)
+++- + + ++ .++++.++.|+|... ++.+
T Consensus 179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG 258 (735)
T KOG3626|consen 179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG 258 (735)
T ss_pred HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence 8761 0 0 23 567789999999996 8899
Q ss_pred HHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCC-----C----CC-CchHHHHHHHHHHHHHHHH
Q 040770 172 QYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGAT-----P----FT-AWRIAFFIPGWLHVIMGIL 241 (521)
Q Consensus 172 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~-----~----~~-~wr~~f~~~~~~~~~~~~~ 241 (521)
.+|+=|...+++-+..+|+......+|-++|.+++++...+..+.+.. . |. .|..-|++.+.+.++.++.
T Consensus 259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887778777777777776655433111 1 11 3777888899998888888
Q ss_pred HHHhcccCCCCChh------hhhccCC---Ccc-------ccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 040770 242 VLTLGQDLPDGNLG------ALQKKGN---VNK-------DKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEF 305 (521)
Q Consensus 242 ~~~~~~~~p~~~~~------~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (521)
.+++.++.|++.++ +..+.+. ++. +++.+.++++++||.+...++...+....+.++.+++|-|
T Consensus 339 ~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKy 418 (735)
T KOG3626|consen 339 LFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKY 418 (735)
T ss_pred HHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHH
Confidence 88887777765321 0111111 011 2335567888999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHH-HHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHH
Q 040770 306 MYDRFNLKLHTAGTIAATFG-MANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF 365 (521)
Q Consensus 306 l~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (521)
++++||.++..+..+....+ .+..+|.+++|++..|+.-+. |......++..++..++
T Consensus 419 LE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~--r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 419 LETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA--RGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH--HHHHHHHHHHHHHHHHH
Confidence 99999999999998885544 455677889999999887653 32333444444444444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=126.81 Aligned_cols=251 Identities=12% Similarity=0.089 Sum_probs=168.8
Q ss_pred hcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 040770 80 FAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARF 159 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 159 (521)
...+|.+-.+-+++|.+..|++.+....+....+...+.|.++||+|||+..++.+++++++++. -..++++.++++|+
T Consensus 51 WLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRv 129 (354)
T PF05631_consen 51 WLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRV 129 (354)
T ss_pred HhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHH
Confidence 34455555666789999999999999999999999999999999999999999999999999964 45588999999999
Q ss_pred HHHhhhhh-hhhHHHH-HHhhcCCcchhhHHHHhhhhhh-hhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 040770 160 MIGFCLAT-FVSCQYW-TTIMFNGKILGLVNGCAGGWGD-MGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHV 236 (521)
Q Consensus 160 l~G~~~~~-~~~~~~~-i~~~~~~~~r~~~~~~~~~~~~-~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~ 236 (521)
+.|++... +.+-.++ +.|+-..+.+....+-...-.. ++..+-.++.+++++.+.+.. +. |-..+|....++.+
T Consensus 130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~--~~-g~vaPF~~a~~~l~ 206 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF--GF-GPVAPFDAAIVLLA 206 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh--CC-CCcchHHHHHHHHH
Confidence 99999996 6666664 5565422222122222111112 344444455556666554321 11 44778888777766
Q ss_pred HHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH
Q 040770 237 IMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHT 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~ 316 (521)
+.++++....+|...++. +..+..++..+.++.+.+||+++.+.++..+.-+..+.+.....+-+.. +-...-
T Consensus 207 ~~~~~I~~~W~ENyg~~~-----~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~--~~~~~P 279 (354)
T PF05631_consen 207 VAAVLILKTWPENYGDTS-----SSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDP--DDEELP 279 (354)
T ss_pred HHHHHHHhcccccCCCcc-----cccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecC--CCCCCC
Confidence 666655544333322111 1111223444566778889999999999998887776655443333332 112234
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhh
Q 040770 317 AGTIAATFGMANIFARPFGGYASDV 341 (521)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~d~ 341 (521)
.|++++.+.++.++|+.+..++..+
T Consensus 280 ~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 280 LGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7899999999999999888766554
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-14 Score=138.52 Aligned_cols=343 Identities=10% Similarity=0.048 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHhhhhcchhchHHHHhhcCCCcc-chhhHHH----HHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 66 HLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKT-DVGNAGV----ASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~s----~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
....+-.+...+......+..+.....++.... ..+.... ...+...+.++..|.++||+|||..+.+......+
T Consensus 25 ~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l 104 (463)
T KOG2816|consen 25 PLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL 104 (463)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence 333444444555544445555555555543322 2222333 33677788999999999999999999999999988
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhhhh---hhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC
Q 040770 141 AVFCMSFVSDAQGYIAARFMIGFCLA---TFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG 217 (521)
Q Consensus 141 ~~~~~~~~~~~~~l~~~r~l~G~~~~---~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~ 217 (521)
..+...+.. +|.+ + +.|+..+ .+..+.++++|....++|....|+.......+..+++.++..+....
T Consensus 105 ~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~---- 175 (463)
T KOG2816|consen 105 PALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL---- 175 (463)
T ss_pred hHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----
Confidence 888877766 4433 3 6666655 24578899999999999999999999888888888887777666654
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhh-h-------ccCCCccccchhhHHhhhchhHHHHHHHHHH
Q 040770 218 ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGAL-Q-------KKGNVNKDKFSKVFWYGIKNYRTWVFFVLYG 289 (521)
Q Consensus 218 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (521)
|.-.+|.+..+..++..+..++.+||.-.++++.. . +.......+..+.....-.+|..+.+++..+
T Consensus 176 -----~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~ 250 (463)
T KOG2816|consen 176 -----GIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAF 250 (463)
T ss_pred -----CchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHH
Confidence 78889999988888877777777555322211110 0 0000011111222233334556666666665
Q ss_pred HHHHHHHHHhh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH-HHhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 040770 290 FSMGIELTTNN-IISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGG-YASDVAGRLFGMRGRLWTLWIFQTLGGVFCV 367 (521)
Q Consensus 290 ~~~~~~~~~~~-~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (521)
+.......-.. .++.|+...++++..+.+.+.+.......++.++.. .+...++.|+ .+..++..-.+..+
T Consensus 251 ~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~-------~i~lGl~~~~~~~~ 323 (463)
T KOG2816|consen 251 LSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR-------LISLGLLSEFLQLL 323 (463)
T ss_pred HHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HhhHHHHHHHHHHH
Confidence 55544433222 446778888999999999888888888888888777 6666777764 77777777778888
Q ss_pred HhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 368 WLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.+.+..+.|..+....+.++. ....+...+..+ ...++++|.+.++......+.+.++|.++
T Consensus 324 ~~af~~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 324 LFAFATETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred HHHHhccchhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence 888888877766555554443 455566666665 55899999999999999999999999873
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=119.23 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcC
Q 040770 102 NAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFN 180 (521)
Q Consensus 102 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~ 180 (521)
++.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..++++++.+.+.+++.|++.+. .+....++.|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EEEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 345567788899999999999999999999999999999999999999999999999999999986 6788899999999
Q ss_pred CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 040770 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLG 246 (521)
Q Consensus 181 ~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 246 (521)
+++|++.+++.+....+|..+++.+.+.+.+.. +|++.|++.+++.++..+..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFL---------GWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc---------chHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999988899988887776655432 899999998888777666666653
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=142.71 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCC
Q 040770 103 AGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNG 181 (521)
Q Consensus 103 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~ 181 (521)
...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++.+.+++.+++.|++.++ ++...++++|++|.
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt 679 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPS 679 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 35566788899999999999999999999999999999999999999988888889988888775 77888999999999
Q ss_pred cchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 182 KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 182 ~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
++|++++|+..+...+|.++||++++.+... +...+|++.+++.++.+++.+++
T Consensus 680 ~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----------~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 680 DKRATAFGFLNALCKAAAVLGILIFGSFVGI----------TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998888877665543 45677888877766655555543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=117.36 Aligned_cols=334 Identities=12% Similarity=0.016 Sum_probs=235.8
Q ss_pred hhchHHHHhh-cCCCccchh-hHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 040770 83 APLVPIIRDN-LNLTKTDVG-NAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFM 160 (521)
Q Consensus 83 ~~~~~~~~~~-~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (521)
+.+.|.+.+. .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++..+.++.+.+-+..++
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~ 103 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF 103 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 3445555554 788888875 36666777788888999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 040770 161 IGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240 (521)
Q Consensus 161 ~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 240 (521)
.|++.+...+..+++--..++++--++.+...+..-+|-.++.+++.++... +..+.+...++......+..
T Consensus 104 yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-------~~~sy~~L~~isl~~~~~a~- 175 (412)
T PF01770_consen 104 YGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-------GGVSYFQLNYISLASVSLAL- 175 (412)
T ss_pred HHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHH-
Confidence 9999999888899998889999989999888777777776666665555442 22356777666655434433
Q ss_pred HHHHhcccCCCCC---hhh----------hh---ccCCC----------cc-------ccchhhHHhhhchhHHHHHHHH
Q 040770 241 LVLTLGQDLPDGN---LGA----------LQ---KKGNV----------NK-------DKFSKVFWYGIKNYRTWVFFVL 287 (521)
Q Consensus 241 ~~~~~~~~~p~~~---~~~----------~~---~~~~~----------~~-------~~~~~~~~~~~~~~~~~~~~~~ 287 (521)
++.+++|..+.+. ++. .+ +..+. .+ ...++.++...++|.++...+-
T Consensus 176 ~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlW 255 (412)
T PF01770_consen 176 LIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLW 255 (412)
T ss_pred HHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 4444455433211 000 00 00000 00 0124566777889998888888
Q ss_pred HHHHHHHHHHHhhhHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHH
Q 040770 288 YGFSMGIELTTNNIISEFMYDR--FNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF 365 (521)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (521)
..+...+++-+.++......+. -+-....-|.+-+...+.+.++.+..|++-.++.+.. ...+....++.+..
T Consensus 256 Wa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~-----~l~l~~~S~l~a~~ 330 (412)
T PF01770_consen 256 WAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG-----ELALGVFSLLQAGL 330 (412)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH-----HHHHHHHHHHHHHH
Confidence 8887777777777776666554 2334455677777888888888888998855555432 23555566666677
Q ss_pred HHHhhccCcHHHHHHHHHHHHhhhhhccccccccc-ccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 366 CVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIV-PFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++++...++.|..++..++++..+....++...-+ ..+..+.-|...|+..++..+-..+-..+
T Consensus 331 L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT~i 395 (412)
T PF01770_consen 331 LFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTILTLI 395 (412)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheEEE
Confidence 77888888999999999988888777666655543 36677888888888877776655555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=134.35 Aligned_cols=151 Identities=10% Similarity=0.091 Sum_probs=124.5
Q ss_pred hcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhh
Q 040770 92 NLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVS 170 (521)
Q Consensus 92 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~ 170 (521)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+. ...
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677889999999999999999999999999999999999999999999999999999999999999998885 567
Q ss_pred HHHHHHhhcCCcchhhHHHH-hhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccC
Q 040770 171 CQYWTTIMFNGKILGLVNGC-AGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDL 249 (521)
Q Consensus 171 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 249 (521)
...++.|.+|++.|+...+. ++....+|..+++.+.+.+.+.. ||+..|.+.+++.++..++.++..++.
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---------G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---------GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---------CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77899999999988877654 45556677777777666665543 899999999888777776666665554
Q ss_pred CC
Q 040770 250 PD 251 (521)
Q Consensus 250 p~ 251 (521)
|+
T Consensus 407 ~~ 408 (420)
T PRK09528 407 RE 408 (420)
T ss_pred ch
Confidence 44
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=129.66 Aligned_cols=331 Identities=15% Similarity=0.106 Sum_probs=195.3
Q ss_pred chhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc---C--CcHHHHHHHHHHHHHHHHHhhc----cCHH
Q 040770 82 AAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI---G--PRYGTSFLLLLSAPAVFCMSFV----SDAQ 152 (521)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~---G--rr~~~~~~~~~~~~~~~~~~~~----~~~~ 152 (521)
.....|.+++++|+++++...+.+...+... .-++.|.++|-+ | ||+.++++.++.+++.+..+.. .+..
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 3456788999999999999999999999996 566889999986 3 6666777777776656655543 3466
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHHhhcC--CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHH
Q 040770 153 GYIAARFMIGFCLAT-FVSCQYWTTIMFN--GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229 (521)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (521)
...+.-++..+|.+. ...+-+++.|... ++.||...+.......+|..++..+++.+.... ++|+.|.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---------~~~~~f~ 158 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---------GPQGVFL 158 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---------CCeEEeh
Confidence 666677777777774 6677888888873 334778888887777888877776655544432 7899999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCChhhhh---ccCCCc----cccchhhHHhhhchhHHHHHHH-HHHHHHHHHHHHhhh
Q 040770 230 IPGWLHVIMGILVLTLGQDLPDGNLGALQ---KKGNVN----KDKFSKVFWYGIKNYRTWVFFV-LYGFSMGIELTTNNI 301 (521)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 301 (521)
+.+++..+..+..+++.+|.++.++.+.. ++..+. .++....+++.++.+.+|...+ ..++...........
T Consensus 159 i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~ 238 (433)
T PF03092_consen 159 ISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSAS 238 (433)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCcc
Confidence 99888777777777775542222111111 110000 1223455677778888887766 222222111110000
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH-hhcc-----
Q 040770 302 ISEFMYDRFN---LKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW-LGRA----- 372 (521)
Q Consensus 302 ~~~~l~~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 372 (521)
.-.+..+..+ +++...+.+..+..++.++|..+......+..-| + +.....++..+..+. +...
T Consensus 239 ~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R----~---~~~~t~~~~~~~~l~~~~lv~~~n~ 311 (433)
T PF03092_consen 239 SFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWR----R---IFVVTTLVSVLASLFDLLLVTRWNL 311 (433)
T ss_pred EEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----H---HHHHHHHHHHHHhcccEEEEEEEee
Confidence 0011123344 8888888777666666666555554443333322 2 333333333222221 1111
Q ss_pred ----CcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 373 ----ESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 373 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.+..+.--++..+.....+-+...+.. ..|+..-|+.+++...+.++|..++..+
T Consensus 312 ~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~l 373 (433)
T PF03092_consen 312 DLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTL 373 (433)
T ss_pred eeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11121122222233222232223333333 5589999999999999999888887776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=133.63 Aligned_cols=165 Identities=15% Similarity=0.048 Sum_probs=114.2
Q ss_pred hhhhcchhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH---HhhccCHH
Q 040770 77 ISTFAAAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC---MSFVSDAQ 152 (521)
Q Consensus 77 ~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~ 152 (521)
...+.....+|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. ...+++..
T Consensus 264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (490)
T PRK10642 264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG 343 (490)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 33334444566654 568988888888888889999999999999999999999988887654433322 23356688
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 040770 153 GYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP 231 (521)
Q Consensus 153 ~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (521)
.+++++++.|++.+. ......++.|.+|++.|+.++++......++..+++.+.+.+.... .+|+.++++.
T Consensus 344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--------~~~~~~~~~~ 415 (490)
T PRK10642 344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--------QNLMMPAYYL 415 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCchHHHHHH
Confidence 888899999988775 4566778889999999999999754434444555555444443321 1578777777
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 040770 232 GWLHVIMGILVLTLGQDLP 250 (521)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p 250 (521)
.+++++..+..+ +.||.|
T Consensus 416 ~~~~~i~~~~~~-~~pes~ 433 (490)
T PRK10642 416 MVVAVIGLITGV-TMKETA 433 (490)
T ss_pred HHHHHHHHHHHH-Hhcccc
Confidence 666665555444 434444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=132.80 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=129.4
Q ss_pred hchHHHHhhcCCCc--------cchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhcc----CH
Q 040770 84 PLVPIIRDNLNLTK--------TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVS----DA 151 (521)
Q Consensus 84 ~~~~~~~~~~~~s~--------~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~ 151 (521)
...+.+.++.|.++ ++.+.+.++..++..++.++.|++.||+|+|+++.++.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 44455566666543 5668899999999999999999999999999999999999998877766632 24
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhh-hhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHH
Q 040770 152 QGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAG-GWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229 (521)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (521)
+.+++.+++.|++.+. .+....++.|++|+++|++++++.+ ...++|..+|+.+++.+.+.... .+..||+..|.
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---~~~~~~~~~f~ 385 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---YGTFDWQTMWL 385 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---ccCCchHHHHH
Confidence 6677889999999886 5677889999999999999999997 56778998888888777665421 01127999999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 040770 230 IPGWLHVIMGILVLTLGQD 248 (521)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~ 248 (521)
+.+++.++.+++.+++.++
T Consensus 386 ~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 386 FFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9999988888888887654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-13 Score=131.82 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=126.2
Q ss_pred cchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 040770 81 AAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFM 160 (521)
Q Consensus 81 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (521)
......|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+..++
T Consensus 238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445677888899999999999999999999999999999999999999998887777777777788888888888888
Q ss_pred HHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH
Q 040770 161 IGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMG 239 (521)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (521)
.|++.++ .+...+++.|.+|+++|++++|+.+....+|..+++.+++.+.+.. .+|...+++.....++..
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--------~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--------RSTVGVIGASIPVILVAA 389 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--------CchHHHHHHHHHHHHHHH
Confidence 8888765 6677889999999999999999999998999888887666654421 156667766666655544
Q ss_pred HHHHHh
Q 040770 240 ILVLTL 245 (521)
Q Consensus 240 ~~~~~~ 245 (521)
++.++.
T Consensus 390 ~~~~~~ 395 (406)
T PRK11551 390 LAALLL 395 (406)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-12 Score=127.66 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=124.5
Q ss_pred hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHh
Q 040770 84 PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGF 163 (521)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 163 (521)
..++.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++.+++.|+
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 314 (399)
T PRK05122 237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF 314 (399)
T ss_pred HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555556665 345677788889999999999999999999999999999999988888888999888899999999
Q ss_pred hhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 040770 164 CLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILV 242 (521)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (521)
+.+. .+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+.. ||++.|++.+++.++..++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------g~~~~~~~~~~~~~~~~~~~ 385 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF---------GYPSIFLAAALAALLGLALT 385 (399)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CHHHHHHHHHHHHHHHHHHH
Confidence 9885 6666677889999999999999999888888887776666655543 89999999888877766665
Q ss_pred HHhcc
Q 040770 243 LTLGQ 247 (521)
Q Consensus 243 ~~~~~ 247 (521)
+++.+
T Consensus 386 ~~~~~ 390 (399)
T PRK05122 386 WLLYR 390 (399)
T ss_pred HHhcc
Confidence 55533
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=127.55 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=120.7
Q ss_pred hchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Q 040770 84 PLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIG 162 (521)
Q Consensus 84 ~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 162 (521)
...|. +++++|.+..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......++++++.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34554 45678999999999888888888889999999999999999888877766666555566788888888999988
Q ss_pred hhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHH
Q 040770 163 FCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGIL 241 (521)
Q Consensus 163 ~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 241 (521)
++.+. ......+..|.+| ++|++++++++...++|..+++.+++.+.+.. +|+..|++.+++.++..++
T Consensus 317 ~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~---------g~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW---------NYHAVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 88774 4566677888886 46999999998888899988888887776654 8999999887776665544
Q ss_pred HHHh
Q 040770 242 VLTL 245 (521)
Q Consensus 242 ~~~~ 245 (521)
.++.
T Consensus 387 ~~~~ 390 (393)
T PRK15011 387 LLRI 390 (393)
T ss_pred HHhh
Confidence 4433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=129.00 Aligned_cols=147 Identities=17% Similarity=0.109 Sum_probs=121.4
Q ss_pred hhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCH--HHHHHHHHH
Q 040770 83 APLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDA--QGYIAARFM 160 (521)
Q Consensus 83 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l 160 (521)
....+.+.++++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++. ..+++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 344556678899998899999999999999999999999999999999999999999988888777643 334566778
Q ss_pred HHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHH
Q 040770 161 IGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIM 238 (521)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (521)
.|++.+. ......++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. ||++.|++.+++.++.
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---------GFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh---------chhhHHHHHHHHHHHh
Confidence 8888775 5566788999999999999999999988899888887777665543 8999999887765543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-12 Score=126.35 Aligned_cols=159 Identities=17% Similarity=0.118 Sum_probs=134.8
Q ss_pred hhchHHHHhh-cCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Q 040770 83 APLVPIIRDN-LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMI 161 (521)
Q Consensus 83 ~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 161 (521)
....|.+.++ +|.+..+.+++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF 322 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 3456766666 899999999999999999999999999999998888888888888888888888889888888889999
Q ss_pred Hhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 040770 162 GFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240 (521)
Q Consensus 162 G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 240 (521)
|++.+. .+...+++.|..|++.||++++++.....+|..+|+.+.+.+.+.. |++..+++.+++.++.++
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~---------g~~~~~~~~~~~~~~~~~ 393 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM---------TPVASASASGFGLLIIGV 393 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---------chhhHHHHHHHHHHHHHH
Confidence 988875 4566788999999999999999999998999999998888887765 888899888888777777
Q ss_pred HHHHhcccCC
Q 040770 241 LVLTLGQDLP 250 (521)
Q Consensus 241 ~~~~~~~~~p 250 (521)
+.+..+++.+
T Consensus 394 ~~~~~~~~~~ 403 (417)
T PRK10489 394 LLLLVLGELR 403 (417)
T ss_pred HHHHhccccc
Confidence 7766655443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=124.49 Aligned_cols=157 Identities=20% Similarity=0.327 Sum_probs=135.5
Q ss_pred hhhcchhchHHHHhhc-CCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcH-HHHHHHHHHHHHHHHHhhccCHHHHH
Q 040770 78 STFAAAPLVPIIRDNL-NLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRY-GTSFLLLLSAPAVFCMSFVSDAQGYI 155 (521)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (521)
.........|.+.++. |.+..+.++..+...++..++.++.+++.||+|||+ .+..+.++..++.++..+.++.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 269 (352)
T cd06174 190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444555666666665 899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHH
Q 040770 156 AARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWL 234 (521)
Q Consensus 156 ~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~ 234 (521)
+..++.|++.+. .+....++.|..|+++|++.+++.+...++|..+++.+.+.+.+. .+|+..|++.+++
T Consensus 270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---------~~~~~~~~~~~~~ 340 (352)
T cd06174 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---------GGYGGVFLILAAL 340 (352)
T ss_pred HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCcchHHHHHHHH
Confidence 999999999996 778899999999999999999999999999998887766665542 2899999999988
Q ss_pred HHHHHHHHH
Q 040770 235 HVIMGILVL 243 (521)
Q Consensus 235 ~~~~~~~~~ 243 (521)
.++..++.+
T Consensus 341 ~~i~~i~~~ 349 (352)
T cd06174 341 ALLAALLLL 349 (352)
T ss_pred HHHHHHHhe
Confidence 777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=126.20 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=124.3
Q ss_pred chhchHHHHhhcCCCccc----hhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 040770 82 AAPLVPIIRDNLNLTKTD----VGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAA 157 (521)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (521)
..+.++.+..+.+.+..+ .+.+.+++.++..++.+..|++.||+|||+.+..+.++..++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344555555554333332 4556667778888999999999999999999999999888888888888899999999
Q ss_pred HHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 040770 158 RFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHV 236 (521)
Q Consensus 158 r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~ 236 (521)
+++.|++.+. .+....++.+..++++||+.+++++....+|..+|+.+++.+.+.. ||++.|++.+++.+
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~---------g~~~~f~~~~~~~l 388 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY---------GFRAVFLVTAGVVL 388 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc---------chhHHHHHHHHHHH
Confidence 9999999986 6677788888899999999999999888899988887777665533 89999999998887
Q ss_pred HHHHHHHHh
Q 040770 237 IMGILVLTL 245 (521)
Q Consensus 237 ~~~~~~~~~ 245 (521)
+..++.++.
T Consensus 389 ~~~~~~~~~ 397 (408)
T PRK09874 389 FNAVYSWNS 397 (408)
T ss_pred HHHHHHHHH
Confidence 777666554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.7e-12 Score=123.43 Aligned_cols=152 Identities=9% Similarity=0.013 Sum_probs=119.2
Q ss_pred hHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH-HHHhhccCHHHHHHHHHHHHhh
Q 040770 86 VPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV-FCMSFVSDAQGYIAARFMIGFC 164 (521)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~ 164 (521)
.|.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|+|+... +..+..++. ++..+.++.+.+.++.++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34556668999999999999999999999999999999999887544 444444443 3445667888888899999998
Q ss_pred hhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 040770 165 LAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVL 243 (521)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (521)
.+. .+.....+.+..| ++|+++++++.....+|..+|+++++.+.+.. |++..|++.+++.++..+..+
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~---------g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL---------GLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------ChhHHHHHHHHHHHHHHHHHH
Confidence 775 4556677777765 68899999999888999988888777776544 999999999988877777666
Q ss_pred Hhccc
Q 040770 244 TLGQD 248 (521)
Q Consensus 244 ~~~~~ 248 (521)
...++
T Consensus 378 ~~~~~ 382 (390)
T PRK03545 378 LIFRR 382 (390)
T ss_pred HHccc
Confidence 66543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=122.39 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=125.4
Q ss_pred hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHh
Q 040770 84 PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGF 163 (521)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 163 (521)
...|.+.++.+.+ +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|+
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 314 (392)
T PRK12382 237 TFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGA 314 (392)
T ss_pred HHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445555666654 35666777888888999999999999999999999999999998888888999888899999999
Q ss_pred hhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 040770 164 CLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILV 242 (521)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (521)
+.+. .+.....+.|.+|+++|++++++++....+|..+++.+.+.+.+.. ||++.|.+.+++.++..++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---------g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---------GYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CchHHHHHHHHHHHHHHHHH
Confidence 9885 6677788899999999999999999998999988888777776654 89999999998877766665
Q ss_pred HHh
Q 040770 243 LTL 245 (521)
Q Consensus 243 ~~~ 245 (521)
++.
T Consensus 386 ~~~ 388 (392)
T PRK12382 386 ILS 388 (392)
T ss_pred Hhh
Confidence 544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=121.81 Aligned_cols=158 Identities=6% Similarity=-0.091 Sum_probs=129.7
Q ss_pred HHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccC
Q 040770 71 SFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSD 150 (521)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 150 (521)
..++.......+....|.+.+++|.+..++|++.+...++..+..++.+++.||+|+|+.+.++.++..+..++.+++++
T Consensus 213 ~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 292 (382)
T TIGR00902 213 AVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA 292 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 33333344444444566666789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhh-hhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHH
Q 040770 151 AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAG-GWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAF 228 (521)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f 228 (521)
.+.+++.++++|+..+. .+....++.+. |+++|+...++++ ...++|..+++.+++.+.+.. |+ ..|
T Consensus 293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------g~-~~~ 361 (382)
T TIGR00902 293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------GA-GTF 361 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cH-HHH
Confidence 99999999999999996 77888899988 9999999999986 355688888887777776654 65 567
Q ss_pred HHHHHHHHHHH
Q 040770 229 FIPGWLHVIMG 239 (521)
Q Consensus 229 ~~~~~~~~~~~ 239 (521)
++.+++.++..
T Consensus 362 ~~~~~~~~~~~ 372 (382)
T TIGR00902 362 VFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHH
Confidence 77777766443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=120.82 Aligned_cols=167 Identities=11% Similarity=0.108 Sum_probs=128.0
Q ss_pred HHHHHHHHhhhhcchhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 69 WVSFFTCFISTFAAAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
.+..++............|.+. +++|++..+.+++.+.+.++..++.++.|++.||+|+|+.+.....+..+...+...
T Consensus 211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~ 290 (394)
T PRK03699 211 AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN 290 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445566655 678999999999999999999999999999999999999999888887777777777
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~ 226 (521)
.++.+.+.+..++.|++.+. ++...++..+..| +++++..+.......+|..++|.+.+.+.+.. ||+.
T Consensus 291 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~---------g~~~ 360 (394)
T PRK03699 291 TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF---------GLQA 360 (394)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---------Cchh
Confidence 78887777788888888775 5666667777664 55677888888777888888887777666644 8999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 040770 227 AFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~ 245 (521)
.|++.+++.++..+.+..+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 361 ALLTANGLYAVVFVMCILL 379 (394)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 9998888877665554444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=120.07 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=119.0
Q ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh
Q 040770 88 IIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT 167 (521)
Q Consensus 88 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 167 (521)
.+.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+..++..+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999988888777888899999999999999999888877777666666778888888899999999885
Q ss_pred -hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 040770 168 -FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVL 243 (521)
Q Consensus 168 -~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (521)
.+....++.|..|+ +++.++++++...++|..+++.+++.+.+.. ||+..|++.+++.++..++..
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---------g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW---------SYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHHHHHHh
Confidence 56677888888865 6679999998888899988888777766543 899999998887666555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=124.81 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
++.+++..++.+.........+|. +++++|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 333444444444444445555675 4567999999999999999999999999999999999999887765544443332
Q ss_pred --HHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhh-hhHHHHhHHHHHHHH-HHHhCC
Q 040770 144 --CMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDM-GGGVTQLLMPLVFEV-IKLAGA 218 (521)
Q Consensus 144 --~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~-~~~~~~ 218 (521)
+....++.+.+.+.+++.|++..+ .........|.+|++.||.+.|+.+...++ |..+++.+.+.+.+. ......
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 233456777777888888865443 334446777999999999999999877775 556666555444430 000000
Q ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 219 --TPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 219 --~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
....+|+..|++.++..++..+..+++
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 002379999999877766655544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=118.74 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=122.7
Q ss_pred HHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHH-HHHHHHHHHHHHHh--
Q 040770 70 VSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTS-FLLLLSAPAVFCMS-- 146 (521)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~-- 146 (521)
+..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~ 308 (402)
T TIGR00897 229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI 308 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455678888889999999999999999999999999999999999888764 33333334333322
Q ss_pred ---hccCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 147 ---FVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 147 ---~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
..++++.+++..++.|++.+...+....+.|.. +++|++++|+.+....+|..++|.+++.+.+.. |
T Consensus 309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~---------g 378 (402)
T TIGR00897 309 PQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF---------G 378 (402)
T ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------c
Confidence 235677778888899988876444455666754 568999999999888888888887776665543 8
Q ss_pred chHHHHHHHHHHHHHHHHHHHh
Q 040770 224 WRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 224 wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
|+..|++.+++.++.+++.+++
T Consensus 379 ~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 379 AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998877776666654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-11 Score=117.97 Aligned_cols=161 Identities=13% Similarity=0.087 Sum_probs=120.5
Q ss_pred HHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhcc-CHHH
Q 040770 75 CFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVS-DAQG 153 (521)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (521)
...........+|.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...
T Consensus 217 ~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (393)
T PRK09705 217 INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV 296 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 333444444556777777899999999999999999999999999999999999999998888777776554333 3222
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHHhhcC-CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 040770 154 YIAARFMIGFCLAT-FVSCQYWTTIMFN-GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP 231 (521)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (521)
+ .-++.|++.+. .+.......+.++ +++|++.+++.+....++..++|.+.+.+.+... +|...|++.
T Consensus 297 ~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--------~~~~~~~~~ 366 (393)
T PRK09705 297 L--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--------NYLMDWAFH 366 (393)
T ss_pred H--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CchHHHHHH
Confidence 2 23456777775 5666666667774 5789999999998888888888877777766541 588888888
Q ss_pred HHHHHHHHHHHHHh
Q 040770 232 GWLHVIMGILVLTL 245 (521)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (521)
++..++..+..+.+
T Consensus 367 ~~~~~~~~~~~~~~ 380 (393)
T PRK09705 367 ALCVVGLMIITLRF 380 (393)
T ss_pred HHHHHHHHHHHHHh
Confidence 87777666665555
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=125.04 Aligned_cols=174 Identities=15% Similarity=0.037 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
+....+..+.............|.+.+++|.+..+.++......++..++.+++|++.||+|||+.+.++.++.+++.++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333444443333444555678888899999988899999999999999999999999999999999998888887777
Q ss_pred Hhh-----cc------CHHHHHHHHHHHHhhhh-h-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 145 MSF-----VS------DAQGYIAARFMIGFCLA-T-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 145 ~~~-----~~------~~~~l~~~r~l~G~~~~-~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
.++ .+ +...+.... +.+.+.+ + .+....++.|.+|+++|++++++.+...++|..+++.+.+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 366 LGILGASFVTGSSKSSGNVAIVFIL-LFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHhhcccCCcccchhHHHHHHHH-HHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 652 12 222232222 3333323 2 34556778999999999999999999888888877776665554
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q 040770 212 VIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQD 248 (521)
Q Consensus 212 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (521)
.. +|++.|++.++++++.+++.+++.++
T Consensus 445 ~~---------~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 445 SI---------GVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred hc---------CccceehhHHHHHHHHHHHHheeccc
Confidence 32 89999999988888777776666443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-11 Score=117.62 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=117.4
Q ss_pred hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHh
Q 040770 84 PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGF 163 (521)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 163 (521)
..+|.+.++.|.+..+.+++.+.+.++..+++++.|++.||+|+|+++..+.++.+++.++.. + ...+....++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 346777778899999999999999999999999999999999999999988888877766543 2 2344456777787
Q ss_pred hhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 040770 164 CLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILV 242 (521)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 242 (521)
+... .+....++.|..|+++++.+.+......++|..+||.+++.+.+.. +|++.|.+.+.+.++..+..
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~---------g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY---------SDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CccHHHHHHHHHHHHHHHHH
Confidence 7664 7788888999998888888888887777888888887777766544 89999999888776554444
Q ss_pred H
Q 040770 243 L 243 (521)
Q Consensus 243 ~ 243 (521)
+
T Consensus 369 ~ 369 (381)
T PRK03633 369 L 369 (381)
T ss_pred H
Confidence 3
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-12 Score=125.50 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=125.7
Q ss_pred HHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc--CCcHHHHH--HHHHHHHHHHH
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI--GPRYGTSF--LLLLSAPAVFC 144 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~~~~~~~~~ 144 (521)
....++..+........+|.+.+++|.+..+.+++.++..++..++.++.|++.||. ++|+...+ +.++.+++.++
T Consensus 247 ~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll 326 (455)
T TIGR00892 247 LSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL 326 (455)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444556777788999999999999999999999999999999984 33433333 34444555666
Q ss_pred HhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 145 MSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
+.+.++++.+++.+++.|++.+. .+...+++.|.+|++++++.+++++...++|..+|+.+++.+.+.. .+
T Consensus 327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~--------g~ 398 (455)
T TIGR00892 327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT--------KN 398 (455)
T ss_pred HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc--------CC
Confidence 77788999999999999999886 5677889999999999999999999999999988887776665432 15
Q ss_pred chHHHHHHHHHHHHHHH
Q 040770 224 WRIAFFIPGWLHVIMGI 240 (521)
Q Consensus 224 wr~~f~~~~~~~~~~~~ 240 (521)
|++.|++.+++.++..+
T Consensus 399 ~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 399 YKYIFYASGSIVVSAGL 415 (455)
T ss_pred cchHHHHhhHHHHHHHH
Confidence 99999998887665544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=121.53 Aligned_cols=168 Identities=17% Similarity=0.113 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhhhcchhchHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcH--HH------HHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRY--GT------SFLLLLS 138 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~~------~~~~~~~ 138 (521)
..+..++............|.+ .+++|.+..+.+++.+...++..++.++.|++.||+|||+ .. ..+.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 3444444444444455555654 4568999999999999999999999999999999999986 11 1111112
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCC
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGA 218 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~ 218 (521)
.+........++.+..+....+.+.+.+..+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~----- 374 (399)
T TIGR00893 300 SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT----- 374 (399)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----
Confidence 222222222334444444444444444446678899999999999999999999998899988877666654432
Q ss_pred CCCCC-chHHHHHHHHHHHHHHHHHHH
Q 040770 219 TPFTA-WRIAFFIPGWLHVIMGILVLT 244 (521)
Q Consensus 219 ~~~~~-wr~~f~~~~~~~~~~~~~~~~ 244 (521)
+ |++.|++.+++.++..+..++
T Consensus 375 ----g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 375 ----GSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHH
Confidence 6 999999888877666555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=120.69 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=112.2
Q ss_pred HHHHHHHHhhhhcchhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH--HHH
Q 040770 69 WVSFFTCFISTFAAAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV--FCM 145 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~ 145 (521)
....+.............|.+. +++|.+..+.+++.+...++..++.++.|++.||+|||+.+.....+..+.. ++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T TIGR00883 225 LGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445566655 7789999999999999999999999999999999999998876555444333 222
Q ss_pred hh--ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHh-hhhhhhhhHHHHhHHHHHHHHHHHhCCCCC
Q 040770 146 SF--VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCA-GGWGDMGGGVTQLLMPLVFEVIKLAGATPF 221 (521)
Q Consensus 146 ~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~ 221 (521)
.+ .++.+.+++..++.|++.+. .+...+++.|.+|+++|++++++. +....+|..++|.+++.+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~-------- 376 (394)
T TIGR00883 305 ALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT-------- 376 (394)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc--------
Confidence 22 35677777888888988875 678889999999999999999874 3444456666666655555433
Q ss_pred CC-chHHHHHHHHH
Q 040770 222 TA-WRIAFFIPGWL 234 (521)
Q Consensus 222 ~~-wr~~f~~~~~~ 234 (521)
| |++.++...+.
T Consensus 377 -g~~~~~~~~~~~~ 389 (394)
T TIGR00883 377 -GDWYAIGYYLAAL 389 (394)
T ss_pred -CcchhHHHHHHHH
Confidence 5 88877766554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-11 Score=119.67 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=121.6
Q ss_pred chhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc--cC-HH-HHHHH
Q 040770 82 AAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV--SD-AQ-GYIAA 157 (521)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~-~~-~l~~~ 157 (521)
.....|.+.+++|.+.....+......+...++.+++|++.||+|||+.++.+.++.+++.++.+.. ++ .+ ...++
T Consensus 290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 369 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 369 (479)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3345688888899888777777778888899999999999999999999999999988888776543 12 11 22333
Q ss_pred HHHHHhhhhh--hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHH--HHHHHhCCCCCCCchHHHHHHHH
Q 040770 158 RFMIGFCLAT--FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVF--EVIKLAGATPFTAWRIAFFIPGW 233 (521)
Q Consensus 158 r~l~G~~~~~--~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~--~~~~~~~~~~~~~wr~~f~~~~~ 233 (521)
.++.+++.+. .+....++.|.+|+++|+.++|+......+|..+++.+.|.+. .++. +..+|++.|++.++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~ 444 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV-----AHFHNGFSYWIYGC 444 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh-----hhccCccHHHHHHH
Confidence 4444544442 3567899999999999999999999999999988887777655 1211 22389999999888
Q ss_pred HHHHHHHHHHHhccc
Q 040770 234 LHVIMGILVLTLGQD 248 (521)
Q Consensus 234 ~~~~~~~~~~~~~~~ 248 (521)
++++.+++.+++.||
T Consensus 445 ~~~~~~~~~~~~~~e 459 (479)
T PRK10077 445 MGVLAALFMWKFVPE 459 (479)
T ss_pred HHHHHHHHHHhcccc
Confidence 877777766666444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-11 Score=118.70 Aligned_cols=144 Identities=10% Similarity=-0.061 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHH
Q 040770 279 YRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIF 358 (521)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (521)
+.++.+.+..++..........++|.|+++.+|++..++|+..+...++.+++.++.|+++||+|||+ .+.++
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~-------~~~~~ 79 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR-------YMLLA 79 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch-------hHHHH
Confidence 34666777777777777778889999999889999999999999999999999999999999999985 55556
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 359 QTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.++.+++.+++.+.++.+..+++..+.+.+.+...+...++..+ .+++.|+++.|+.+...++|..++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l 151 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPL 151 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666776666555556665555555656666554 478889999999999999999999887
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=122.05 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=111.4
Q ss_pred chhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc--cCHHHHHHHH
Q 040770 82 AAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV--SDAQGYIAAR 158 (521)
Q Consensus 82 ~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r 158 (521)
....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++.... .+.+.+.+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 345567766 5899999999999999999999999999999999999999988877776665544433 3344444455
Q ss_pred HHHHhhhh-hhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 040770 159 FMIGFCLA-TFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVI 237 (521)
Q Consensus 159 ~l~G~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (521)
++.+.... .......++.|.+|+++|++++++.+....+|..+|+++++.+.+.. ||+..+.+.+....+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~---------g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL---------DLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC---------ChHHHHHHHHHHHHH
Confidence 55444333 34566678899999999999999998888888887777666665433 888888666654444
Q ss_pred HH
Q 040770 238 MG 239 (521)
Q Consensus 238 ~~ 239 (521)
.+
T Consensus 445 ~~ 446 (496)
T PRK03893 445 VV 446 (496)
T ss_pred HH
Confidence 33
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=112.06 Aligned_cols=343 Identities=11% Similarity=0.040 Sum_probs=201.7
Q ss_pred hhhH-HHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHh
Q 040770 100 VGNA-GVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTI 177 (521)
Q Consensus 100 ~~~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~ 177 (521)
.|+. .++.+..+.++.++.+.+.|+.|+|+.+.++...+..-.+..-+- |-+.++++-.+.|+|.+. +.....+++|
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhh
Confidence 4443 777888888999999999999999999999999998877776664 466678888999999996 7777899999
Q ss_pred hcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCch-H-------HHHHHHHHHHHHHHHHH--Hhcc
Q 040770 178 MFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWR-I-------AFFIPGWLHVIMGILVL--TLGQ 247 (521)
Q Consensus 178 ~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr-~-------~f~~~~~~~~~~~~~~~--~~~~ 247 (521)
..+++.+.+..++..+....+..+|.++.-.+...-........ +-+ . .+.+.-+..++..+..+ ...-
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~ 208 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITD-GTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD 208 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEeccccccccc-chhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee
Confidence 99999999999999888888886665533222221111111011 111 0 01111111111111000 0000
Q ss_pred cCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--hcCCCH-HHHHHHHHHH
Q 040770 248 DLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYD--RFNLKL-HTAGTIAATF 324 (521)
Q Consensus 248 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~s~-~~~~~~~~~~ 324 (521)
..|.+......+..+....+..+...+.+++|+.+.+....+........+....|..+.- ..+.+. ...++.....
T Consensus 209 ~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~ 288 (461)
T KOG3098|consen 209 FLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGI 288 (461)
T ss_pred ecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHH
Confidence 1122211111111101111122344556777887777666655544444444455554432 223322 3444555567
Q ss_pred HHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhh-ccC-----------------cHHHHHHHHHHHH
Q 040770 325 GMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG-RAE-----------------SLPIAVVAMVLFS 386 (521)
Q Consensus 325 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~g 386 (521)
+++.+++....+.+.+|.++.. +...+.++.++..+.+++.. ..+ +.....+..++.|
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg----~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFG----RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcc----cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 7777777777888877765533 11233333333333322221 111 2346677778888
Q ss_pred hhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhHhcccchhHHHHHHHHHHH
Q 040770 387 MGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAFFSNSKFSTATGISLMGAL 448 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~ 448 (521)
++-.......+..+..+.++.|..+.++...-..++..++-........+.+.....+.+.+
T Consensus 365 ~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l~~~~l~~~i~~~i 426 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYLLLYIYTLGLPIFCVI 426 (461)
T ss_pred hHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 88888888888888777688888899988888888777766655544444444444444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=115.57 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=111.6
Q ss_pred HHHHHHHHhhhhcchhchHHHHh-hcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc--CCcHHH-HHHHHHHHHHHHH
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRD-NLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI--GPRYGT-SFLLLLSAPAVFC 144 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~ 144 (521)
.+..++.....+.....+|.+.+ +.|.+..+.++....+.++..++.++.|+++||+ |||+.. .....+..++.++
T Consensus 259 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~ 338 (452)
T PRK11273 259 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 338 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH
Confidence 34433444343444556677555 4789989999999999999999999999999999 555432 2222333333333
Q ss_pred Hhh--ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHH-HHhHHHHHHHHHHHhCCCC
Q 040770 145 MSF--VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGV-TQLLMPLVFEVIKLAGATP 220 (521)
Q Consensus 145 ~~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-g~~~~~~l~~~~~~~~~~~ 220 (521)
..+ ..+.+.+.++.++.|.+..+ ......++.|.+|+++||+++|+.+....+|..+ ++.+.+.+.+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~------- 411 (452)
T PRK11273 339 YWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------- 411 (452)
T ss_pred HHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-------
Confidence 222 34555555555555554332 2334456789999999999999998877777544 677666666654
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 221 FTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
||+..|++.++.+++..+....+
T Consensus 412 --g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 412 --GWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHH
Confidence 89999998888777665555544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=110.39 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=113.6
Q ss_pred chHHHHhhcCCCccchhhHHH-HHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH---Hhhc-cCHHHHHHHHH
Q 040770 85 LVPIIRDNLNLTKTDVGNAGV-ASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC---MSFV-SDAQGYIAARF 159 (521)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~-~~~~~l~~~r~ 159 (521)
..|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++ .+.. ++.+.+.+.-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345556779999999999874 667899999999999999999998887766655544332 2333 45655666666
Q ss_pred HHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHH
Q 040770 160 MIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIM 238 (521)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 238 (521)
++.++.|. .....++..+..+++.++...++.++..++|..+++.+.+.+.+.. ||+..|.+.++++++.
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~---------G~~~~f~~~~~~~l~~ 395 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH---------GWPTFYLFSVAAAVPG 395 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ChHHHHHHHHHHHHHH
Confidence 76666663 5566788889999999999999998888888776666555555543 8999999988887776
Q ss_pred HHHHHHh
Q 040770 239 GILVLTL 245 (521)
Q Consensus 239 ~~~~~~~ 245 (521)
.++.+++
T Consensus 396 l~~~~~~ 402 (491)
T PRK11010 396 LLLLLVC 402 (491)
T ss_pred HHHHHHH
Confidence 6665555
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=114.31 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=132.9
Q ss_pred chhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 040770 82 AAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFM 160 (521)
Q Consensus 82 ~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 160 (521)
+..++|.+. +++|.+...+|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l 316 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL 316 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334567765 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH
Q 040770 161 IGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMG 239 (521)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (521)
.|++... .....+.+-+..|++.||++++++++....+..+|.++.+.+.+.. |-+..+.+.++..++..
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~---------g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF---------GVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CHHHHHHHHHHHHHHHH
Confidence 9999885 5677788999999999999999999998888999998888888776 88888888777655554
Q ss_pred HHHH
Q 040770 240 ILVL 243 (521)
Q Consensus 240 ~~~~ 243 (521)
++.+
T Consensus 388 ~~~~ 391 (524)
T PF05977_consen 388 LIAL 391 (524)
T ss_pred HHHH
Confidence 4443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=113.89 Aligned_cols=353 Identities=14% Similarity=0.037 Sum_probs=210.7
Q ss_pred HHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCc-HHHHHHHHHHHHHHHHHhhc
Q 040770 70 VSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPR-YGTSFLLLLSAPAVFCMSFV 148 (521)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~~~~~~~~~~~~~~~~~~~ 148 (521)
+.++..+......-|+++.+.+++|+++.+.|.+...-.+...++.+++|+++||+-+| +.++.+++......++..+.
T Consensus 18 ~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 18 LFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred eeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 33444455566677889999999999999999999999999999999999999999755 55555666666777776664
Q ss_pred c----CHHH----------HHHHHHHHHhhhhh-hhhH----------HHHH------------HhhcCCcc--------
Q 040770 149 S----DAQG----------YIAARFMIGFCLAT-FVSC----------QYWT------------TIMFNGKI-------- 183 (521)
Q Consensus 149 ~----~~~~----------l~~~r~l~G~~~~~-~~~~----------~~~i------------~~~~~~~~-------- 183 (521)
+ +... .-..|..-|+.... ...+ ...- +++.+.+.
T Consensus 98 ~P~~~~~i~~~~~~c~~~~~~~~~~~~~v~l~~~~~s~~~~~~s~pa~~~~~~Eap~~~~~~~~s~~~~~~d~~~~i~ps 177 (618)
T KOG3762|consen 98 PPVDKNRIHEVFFCCDSSGLDSGRALRGVTLPVNINSCQEGASSRPAKCALEVEAPGFRNPIEESDFLTFEDEHAAIAPS 177 (618)
T ss_pred cCcccCcccccccccccccCchhhhccCccceechhhhhccccCCcHHHHHhccCccccCCcccchhhhhhhhhhccchh
Confidence 2 1111 22334444443221 0000 0000 00000000
Q ss_pred ------------------------------------------------------h------------hhHHHHhhhhhhh
Q 040770 184 ------------------------------------------------------L------------GLVNGCAGGWGDM 197 (521)
Q Consensus 184 ------------------------------------------------------r------------~~~~~~~~~~~~~ 197 (521)
. ....+......+.
T Consensus 178 ~~~~v~s~~~~~~~~~~s~~~~~~~~rq~~v~~~~v~Ll~~~~~~ef~s~c~~~~~d~~~~~~~~e~~~~~~~~~~~~~~ 257 (618)
T KOG3762|consen 178 VITFVRSYDQALLEPVVSPLFSHRVYRQPEVQKAHVCLLTPIKIGEFFSNCAGTLADAAVFDLLLEAAAITGSLRYGASL 257 (618)
T ss_pred hhcccccCCHHhhccccCcccccchhcccccccceeEEeecccccccccCccccchHHHHHHHHhhhhhhhceeeccchh
Confidence 0 0001111123344
Q ss_pred hhHHHHhHHH-HHHHHHHH---h----CC-CCCCCchHHHHHHHHHHHHHHHHHHH--hccc-CCCCC----hhh-----
Q 040770 198 GGGVTQLLMP-LVFEVIKL---A----GA-TPFTAWRIAFFIPGWLHVIMGILVLT--LGQD-LPDGN----LGA----- 256 (521)
Q Consensus 198 G~~ig~~~~~-~l~~~~~~---~----~~-~~~~~wr~~f~~~~~~~~~~~~~~~~--~~~~-~p~~~----~~~----- 256 (521)
|+.+..++.. .-.++... . .. +....|+..+.+.++++.-+.+...- +.-+ .+... ..+
T Consensus 258 gW~l~~~~~~~i~~d~~~sf~d~~c~~~~~~e~~n~~~~~~v~gv~~~~A~~~~~~~~~~~~~~~~~v~~~~~~~v~~~l 337 (618)
T KOG3762|consen 258 GWGLAMFLCGQIALDYTYSFSDAPCKGDLGDEEKNYYLCQRVCGVLGTGATGSAADCFFKYDMGHRLVVDSYGAEVESML 337 (618)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcCCCccccchhhhchhhhhhHHHHHHHHHHHHhcCcEEEeccccccccccccHHHHHHH
Confidence 4444333222 11111111 0 11 11446888888888665544333322 2112 11110 000
Q ss_pred ---------hhc--cCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 040770 257 ---------LQK--KGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFG 325 (521)
Q Consensus 257 ---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~ 325 (521)
..+ ..+...+..+....+.+.++....+.+...+.......+.+++--++++ .+-.+...|...+...
T Consensus 338 ~~~~~~~f~~s~~~~~~~~~~~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~ 416 (618)
T KOG3762|consen 338 ALAASIAFPSSKLGQGEPHSSSVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCH 416 (618)
T ss_pred HHHHHhhccccccCCCCchHHHHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhc
Confidence 000 0011112234444456667766665555554444444455555445555 4667777787777888
Q ss_pred HHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-c
Q 040770 326 MANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-S 404 (521)
Q Consensus 326 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 404 (521)
.+.++.-++.+++.+|+|+-+ ++..++.+..+=++.+....|+|..+..=++-|+..+..+....++++.+ |
T Consensus 417 ~gEI~~~ffs~klI~kiGHv~-------v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaP 489 (618)
T KOG3762|consen 417 AGEILFYFFSFKLIEKIGHVN-------VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAP 489 (618)
T ss_pred cchHHHHHHHHHHHHHhcccc-------eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 888999999999999999875 66667677777777888888999999999999999999999888898855 9
Q ss_pred ccchhhhhhhhhhhhh-----HHHHhhhhhH
Q 040770 405 RRSLGILSGLTGAGGN-----FGSGLTQLAF 430 (521)
Q Consensus 405 ~~~~~~~~g~~~~~~~-----~g~~i~~~l~ 430 (521)
|+.++++.++...... +|++||..+.
T Consensus 490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v 520 (618)
T KOG3762|consen 490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVV 520 (618)
T ss_pred CcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence 9999999999766543 5666666653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=115.92 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=109.6
Q ss_pred chHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH-HHHhhccCHHHHHHHHHHHH
Q 040770 85 LVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV-FCMSFVSDAQGYIAARFMIG 162 (521)
Q Consensus 85 ~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G 162 (521)
.+|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+.. .+....++.+.+.+..++.|
T Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339 (405)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3444 456789999999999999999999999999999999999999988877663333 33344567777777777777
Q ss_pred hhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC-chHHHHHH
Q 040770 163 FCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA-WRIAFFIP 231 (521)
Q Consensus 163 ~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~-wr~~f~~~ 231 (521)
++.++ .+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. | |+..+...
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~---------g~~~~~~~~~ 401 (405)
T TIGR00891 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL---------DEYGTALASL 401 (405)
T ss_pred HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---------cccchhHHhh
Confidence 76664 6677789999999999999999999888999988888777776654 5 77666543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=109.04 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHH
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQ 359 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (521)
.++...+.+...+..--.+..-.|. +.+..++|..+.|++.+.+.+...++.++.|.++||.+.|. .+..++
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~-l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-------fm~~gL 101 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPA-LIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-------FMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-------eehHHH
Confidence 4445555555555555555544554 44556899999999999999999999999999999999986 888899
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 360 TLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
++.++..+++.+.++.+.+.++.++-|.+.+...|.....+. -.++++||+..++.|+..++|+.+.|.+.
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 999999999999999999999999999999999998877655 67999999999999999999999988874
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-10 Score=113.41 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=112.8
Q ss_pred HHHHHHHHhhhhcchhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc--CCc-HHHHH---HHHHHHHH
Q 040770 69 WVSFFTCFISTFAAAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI--GPR-YGTSF---LLLLSAPA 141 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr-~~~~~---~~~~~~~~ 141 (521)
.++++............+|.+. +++|.+..+.++..+.+.++..++.+++|+++||+ ++| ..... +.++..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~ 328 (434)
T PRK11663 249 SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 3334444444444444556655 67899999999999999999999999999999999 333 32222 21212222
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCC
Q 040770 142 VFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATP 220 (521)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~ 220 (521)
..+.. ..+...+.+..++.|++..+ .......+.|.+|+++|+.++|+.+....+|..++|.+.+.+.+..
T Consensus 329 ~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~------- 400 (434)
T PRK11663 329 LWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW------- 400 (434)
T ss_pred HHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-------
Confidence 22222 23444444444444544332 2233456789999999999999999999999999888777666543
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcc
Q 040770 221 FTAWRIAFFIPGWLHVIMGILVLTLGQ 247 (521)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~~~ 247 (521)
||+..|++.+++.++.++..+...+
T Consensus 401 --g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 401 --HWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999988877766665533
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-10 Score=113.91 Aligned_cols=146 Identities=16% Similarity=0.062 Sum_probs=114.6
Q ss_pred HHHHHHHHhhhhcchhchHHHHh-hcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRD-NLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
....++............|.+.+ .+|.++.+.+++...+.++..++.++.|++.||+|+|+++..+.++.+++.++..+
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 267 LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444455676655 58999999999999999999999999999999999999999999888887766655
Q ss_pred c---cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 148 V---SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 148 ~---~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
. ++.+.+.+..++.|++.+. .+....++.+.+|+++++.++++.+....+|..+|+.+++.+.+...
T Consensus 347 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 347 VALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3444455667788888885 66778888899999999999999999999999999988887766653
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=114.06 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
+++..++............|.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+....+......++...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (398)
T TIGR00895 255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST 334 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455667888899999999999999999999999999999999999995555444444433333333
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPL 208 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 208 (521)
.++.+.+++..++.|++.+. .+...+++.|.+|+++|++++|+......+|..+|+.+++.
T Consensus 335 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 335 LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 67788888888999999885 67788999999999999999999998888888777765543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=111.41 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=112.8
Q ss_pred hchHHHHhh-cCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccC-HHHHHHHHHHH
Q 040770 84 PLVPIIRDN-LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSD-AQGYIAARFMI 161 (521)
Q Consensus 84 ~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 161 (521)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ ++.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 456776665 8999999999999999999999999999999999999999988888888888888774 88888999999
Q ss_pred Hhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 162 GFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 162 G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
|++.+. .+....++.|.+|+++|++++++.+....+|..+++.+++.+.+
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 66788999999999999999999999999999888877776655
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-10 Score=111.05 Aligned_cols=143 Identities=10% Similarity=0.121 Sum_probs=117.0
Q ss_pred CCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHH
Q 040770 94 NLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQ 172 (521)
Q Consensus 94 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~ 172 (521)
+.+....|++.+...+...++.++.|++.||+|+|+.+.++.++.+++.++...++|.+.+++.++++|++... .....
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888988999999999999999999999999999999999888888889999999999999998775 44666
Q ss_pred HHHHhhcCCcchhhHHHH-hhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 173 YWTTIMFNGKILGLVNGC-AGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 173 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
.++.+..+++.++...+. .+....+|..+++.+++.+.+.. ||+..|.+.+++.++.+++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---------G~~~~f~~~~~~~~i~~~~~~~~ 394 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---------GFQGAYLVLGCIVLLFTLISVFT 394 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888776665 55667788888877777776654 89999999998887776665443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-10 Score=113.02 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh-hhcccccchhHHHHH
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFMYDR--FNLKLHTAGTIAATFGMANIFARPFGGYASDV-AGRLFGMRGRLWTLW 356 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~ 356 (521)
.++.+.+..++....++....++|.|+.+. +|++..+++.+...+.++..++.+++|+++|| +|||+ .+.
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~-------~l~ 83 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK-------TMV 83 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH-------HHH
Confidence 345555555666777888889999999887 89999999999999999999999999999999 89986 677
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-ccc---chhhhhhhhhhhhhHHHHhhhhhH-h
Q 040770 357 IFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRR---SLGILSGLTGAGGNFGSGLTQLAF-F 431 (521)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~---~~~~~~g~~~~~~~~g~~i~~~l~-~ 431 (521)
++.++.+++.+++...++.+...+...+.+++.+...+...+++.+. +++ .|+.+.++.+...++|.+++|.+. .
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776766667777788888877777777776543 433 488899999999999999999983 2
Q ss_pred cccchhHHHHHH
Q 040770 432 SNSKFSTATGIS 443 (521)
Q Consensus 432 ~~~~~~~~~~~~ 443 (521)
..+.+++...+.
T Consensus 164 l~~~~g~~~~f~ 175 (475)
T TIGR00924 164 IAENYGYHVGFN 175 (475)
T ss_pred HHHhcChHHHHH
Confidence 333333444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.9e-10 Score=104.22 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=127.8
Q ss_pred HHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc-cCHHH
Q 040770 75 CFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV-SDAQG 153 (521)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (521)
.......+..+-|.+++..|.+.+.++++.-.|.++..+|.+++|++.|| +.|+.+....++.++..+...+. ++.+.
T Consensus 224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~ 302 (394)
T COG2814 224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPAL 302 (394)
T ss_pred HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33334456677888999999999999999999999999999999999999 99999998877777777766654 55556
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHH
Q 040770 154 YIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPG 232 (521)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~ 232 (521)
.++.-++.|+..+. .......+++ ..++.+..+.+++....++|..+|..+++.+.+.. |+....++.+
T Consensus 303 ~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~---------g~~~~~~~~a 372 (394)
T COG2814 303 ALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL---------GYAATGWVGA 372 (394)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHH
Confidence 66666666666553 3344555566 44789999999999999999999999998887764 9999999999
Q ss_pred HHHHHHHHHHHHh
Q 040770 233 WLHVIMGILVLTL 245 (521)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (521)
++.++..++.+..
T Consensus 373 ~l~~~a~~~~~~~ 385 (394)
T COG2814 373 ALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9877776666554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.5e-10 Score=108.91 Aligned_cols=143 Identities=6% Similarity=-0.026 Sum_probs=114.2
Q ss_pred hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHh
Q 040770 84 PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGF 163 (521)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 163 (521)
...|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|+
T Consensus 226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 305 (382)
T PRK11128 226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCG 305 (382)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455667899999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred hhhh-hhhHHHHHHhhcCCcchhhHHHHhh-hhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 040770 164 CLAT-FVSCQYWTTIMFNGKILGLVNGCAG-GWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVI 237 (521)
Q Consensus 164 ~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (521)
+.+. .+....++.+. +++++++..++.. ....+|..+|+.+++.+.+.. ++ ..|+..+++.++
T Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---------g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 306 TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---------GA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cH-HHHHHHHHHHHH
Confidence 9885 66777787776 5667788888875 444566667777666666543 66 456666655443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-09 Score=94.28 Aligned_cols=162 Identities=13% Similarity=0.133 Sum_probs=119.8
Q ss_pred hhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc-------cC
Q 040770 78 STFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV-------SD 150 (521)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~~ 150 (521)
..+.++..-|.+++.+|+|.+|...+.++..+|..+ .++.|.+.|++|++.++.++.+...+|..+...+ .+
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~ 95 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP 95 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence 456677888999999999999999999999999986 5889999999999999999999999999887653 57
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHH
Q 040770 151 AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFF 229 (521)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~ 229 (521)
+|.+.+..++.|.+.+. ..++.....+.|| ++||.+.|+.-...+++..+-. .+...+-. + +-...+.
T Consensus 96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t----~i~~~~f~----~--~~~~fll 164 (250)
T PF06813_consen 96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFT----QIYSAFFG----D--DPSSFLL 164 (250)
T ss_pred hHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHH----HHHHHHcC----C--ChHHHHH
Confidence 88888888888887765 4566677778886 6899999999888777764322 23332211 1 2223344
Q ss_pred HHHHHHHHHHHHHHHhcccCCC
Q 040770 230 IPGWLHVIMGILVLTLGQDLPD 251 (521)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~ 251 (521)
+.+....+..++..++++..|+
T Consensus 165 ~la~~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 165 FLAVLPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred HHHHHHHHHHHHHhhheeccCC
Confidence 4455445555555555555554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-10 Score=111.93 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=97.2
Q ss_pred chhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Q 040770 82 AAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMI 161 (521)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 161 (521)
....+|.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..+..++....++.....+.-++.
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 34456777777899999999999999999999999999999999999999988877766655544333222122222334
Q ss_pred Hhhh--hh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHH
Q 040770 162 GFCL--AT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEV 212 (521)
Q Consensus 162 G~~~--~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 212 (521)
|++. .+ ......++.|.+|+++|++++|+......+|..++|.+.+.+.+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 4332 22 345567889999999999999999888888888887777666553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=108.42 Aligned_cols=153 Identities=16% Similarity=0.040 Sum_probs=102.7
Q ss_pred chHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh---c-cCHHHHHHHHH
Q 040770 85 LVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF---V-SDAQGYIAARF 159 (521)
Q Consensus 85 ~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~ 159 (521)
..|. +.+++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..+
T Consensus 272 ~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T PRK09952 272 FALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM 351 (438)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444 45678888876666666667777888899999999999999998887766555433322 2 33444455667
Q ss_pred HHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhh-hhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 040770 160 MIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGW-GDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVI 237 (521)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (521)
+.|++.+. .+...+++.|.+|.+.|+...++.... ..+|..++|.+.+.+.+.. ..+|+..+...++..++
T Consensus 352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-------~~~~~~~~~~~~~~~~i 424 (438)
T PRK09952 352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-------GGSWHSVAIYLLAGCLI 424 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHH
Confidence 77788775 567788999999999999888885433 2355555554444433211 11588888887777666
Q ss_pred HHHHHHH
Q 040770 238 MGILVLT 244 (521)
Q Consensus 238 ~~~~~~~ 244 (521)
..+..+.
T Consensus 425 ~~v~~~~ 431 (438)
T PRK09952 425 SAMTALL 431 (438)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=107.87 Aligned_cols=155 Identities=16% Similarity=0.125 Sum_probs=126.9
Q ss_pred chhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCc--HHHHHHHHHHHHHHHHHhh--------ccCH
Q 040770 82 AAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPR--YGTSFLLLLSAPAVFCMSF--------VSDA 151 (521)
Q Consensus 82 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~ 151 (521)
.........+++|++..+...+.-+..+..++|++++|++.||+|.| ++++++++++.+..+...+ .++-
T Consensus 301 ~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~ 380 (477)
T PF11700_consen 301 ISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSP 380 (477)
T ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccH
Confidence 33444555668999999999999999999999999999999999999 8999988888666665555 6788
Q ss_pred HHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHH
Q 040770 152 QGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFI 230 (521)
Q Consensus 152 ~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (521)
+.+.+.-++.|+..|+ .+...++.++..|+++.+..+|++....-....+||++.+.+.+... +-|+.+..
T Consensus 381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--------~~r~g~~~ 452 (477)
T PF11700_consen 381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--------SQRYGFLF 452 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CchhHHHH
Confidence 9999999999999997 77889999999999999999999999888888888876666666542 47888887
Q ss_pred HHHHHHHHHHHHHH
Q 040770 231 PGWLHVIMGILVLT 244 (521)
Q Consensus 231 ~~~~~~~~~~~~~~ 244 (521)
..++.++..++.++
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 77775554444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=111.29 Aligned_cols=141 Identities=12% Similarity=0.002 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHH
Q 040770 282 WVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTL 361 (521)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (521)
+......++.....+....+++.|+++..|+++.+.|+..+...+...+..++.|+++||++||+ .+..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~-------~l~~~~~~ 85 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP-------MIVTGMLM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH-------HHHHHHHH
Confidence 44445556666666777788899998888999999999999999999999999999999999986 66677777
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 362 GGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.++.++.....++.+.+++..++.|++.+...+...+++.+ .|+++|+++.|+.+...++|..++|.+
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l 154 (400)
T PRK11646 86 RAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALL 154 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788877888888888877666776776654 488999999999999999999999987
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-10 Score=112.99 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=107.6
Q ss_pred HHHHHHhhhhcchhchHHHHhhcCCCccchhh------------HHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 71 SFFTCFISTFAAAPLVPIIRDNLNLTKTDVGN------------AGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
.++...+..+......|.+.++.|.+....+. ......++..++.++++++.||+|||+.++++.++.
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~ 375 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFIL 375 (502)
T ss_pred HHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Confidence 33333334444445578887888876543221 133344566678889999999999999999988887
Q ss_pred HHHHHHHhhcc----CHHHHHHHHHHHHhh-hhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 139 APAVFCMSFVS----DAQGYIAARFMIGFC-LATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 139 ~~~~~~~~~~~----~~~~l~~~r~l~G~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+++.++.++.. +...+.+.-+...++ .+..+....+.+|.+|.+.|++++++.+....+|..+++.+.+.+.+.-
T Consensus 376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 77766655432 111111111111121 2224456677899999999999999999998999988877666554411
Q ss_pred HHh-CCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q 040770 214 KLA-GATPFTAWRIAFFIPGWLHVIMGILVLTLGQ 247 (521)
Q Consensus 214 ~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 247 (521)
... +.....++...|++.+++.++..+.. +++|
T Consensus 456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lp 489 (502)
T TIGR00887 456 DPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIP 489 (502)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHh-eEec
Confidence 000 00001245677888887766655543 4433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-10 Score=109.76 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhh-hcccccchhHHHHHH
Q 040770 279 YRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVA-GRLFGMRGRLWTLWI 357 (521)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 357 (521)
+.++..+...+.....++++..++|.|+.+.+|++..+++.+...+.....++.+++|+++||+ |||+ .+.+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr-------~ili 81 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM-------AVML 81 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-------HHHH
Confidence 4556666666667778888889999999998999999999999999999999999999999999 9885 5566
Q ss_pred HHHHHHHHHHHhhccC-cHHHHHHHHHHHHhhhhhcccccccccccc-ccc--chhhhhhhhhhhhhHHHHhhhhhH
Q 040770 358 FQTLGGVFCVWLGRAE-SLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRR--SLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 358 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+.++..++.+++.... +.....+.+.+..++.+...+...+++.+. |++ .|.++.++.....++|+.++|.+.
T Consensus 82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 6666666554444322 222333344445555555556556666654 543 689999999999999999999983
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-10 Score=108.30 Aligned_cols=138 Identities=21% Similarity=0.189 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHH
Q 040770 286 VLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVF 365 (521)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (521)
+..++...........+|.++.+.+|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~l~~~~~~~~~~ 75 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-------VLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-------eEeehhhhhhhH
Confidence 3344444455555566675777778999999999999999999999999999999999985 666666666666
Q ss_pred HHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 366 CVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.++..+.++.+..++..++.|++.+...+....++.+. ++++|+.+.++.+....+|..++|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 141 (352)
T PF07690_consen 76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLG 141 (352)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchh
Confidence 34443436666888888999999988888888887754 778999999999999999999999984
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.7e-10 Score=108.69 Aligned_cols=164 Identities=17% Similarity=0.063 Sum_probs=127.0
Q ss_pred hhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhcc---CHH--
Q 040770 78 STFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVS---DAQ-- 152 (521)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~-- 152 (521)
+..........+-++-|++..+..+......+...+..+++..+.||+|||+.++.+..+..+..+++.... +..
T Consensus 285 Gi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (485)
T KOG0569|consen 285 GINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGS 364 (485)
T ss_pred CcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455556778888999999999999999999999999999999999999999999999888887776531 111
Q ss_pred ----HHHHHHHHHHhhhh--hhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchH
Q 040770 153 ----GYIAARFMIGFCLA--TFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRI 226 (521)
Q Consensus 153 ----~l~~~r~l~G~~~~--~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~ 226 (521)
..+++.++..++.+ .-|...-+.+|.+|++.|..++++......+...+-.+..|.+...+ |- +
T Consensus 365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~---------g~-~ 434 (485)
T KOG0569|consen 365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI---------GP-Y 434 (485)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cc-h
Confidence 12344444444444 35677889999999999999999998888787777777777777665 33 7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCC
Q 040770 227 AFFIPGWLHVIMGILVLTLGQDLPD 251 (521)
Q Consensus 227 ~f~~~~~~~~~~~~~~~~~~~~~p~ 251 (521)
.|++..+++++..+..++.+||...
T Consensus 435 ~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 435 VFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred hhHHHHHHHHHHHHHHHHhCcccCC
Confidence 7888888888888888888655443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=112.02 Aligned_cols=132 Identities=17% Similarity=0.124 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 040770 289 GFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW 368 (521)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (521)
++.+.....+....| ++.+.+|.+..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 5 AAYYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV-------FLPIGLILCAIVNLF 76 (379)
T ss_pred hHHHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee-------hhHHHHHHHHHHHHH
Confidence 344444555555555 455668999999999999999999999999999999999986 666666777777777
Q ss_pred hhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhh
Q 040770 369 LGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQL 428 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~ 428 (521)
....++.+..++..++.|++.+...+...+++.+ .|+++|+.+.++.+....+|..++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence 7777788888888888999888888888877765 47889999999999999999999994
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=106.65 Aligned_cols=153 Identities=13% Similarity=-0.010 Sum_probs=108.6
Q ss_pred chHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc-----cCHHHHHHHH
Q 040770 85 LVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV-----SDAQGYIAAR 158 (521)
Q Consensus 85 ~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r 158 (521)
..|.+ .+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++..++.++..+. ++++.+++..
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL 316 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 34544 56789999999998888888999999999999999999999999988887777766543 4667778888
Q ss_pred HHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 040770 159 FMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVI 237 (521)
Q Consensus 159 ~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 237 (521)
++.|++.+. .+....... ..++++||++.++.+....+|..+|+.+++.+.. ..+|....+..++..++
T Consensus 317 ~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL---------GGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccc---------CCchHHHHHHHHHHHHH
Confidence 899999885 444444443 3345899999999988877777666655544432 22555555555545444
Q ss_pred HHHHHHHhcc
Q 040770 238 MGILVLTLGQ 247 (521)
Q Consensus 238 ~~~~~~~~~~ 247 (521)
..++...+.+
T Consensus 387 ~~~~~~~~~~ 396 (406)
T PRK15402 387 WLLLVRIFLK 396 (406)
T ss_pred HHHHHHHHhc
Confidence 4444444433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.5e-07 Score=87.17 Aligned_cols=277 Identities=10% Similarity=-0.013 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCC-----CccchhhHHHHHHHHHHHH-hhhhHhhhhhcCCcHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNL-----TKTDVGNAGVASVSGSIFS-RLIMGAVCDLIGPRYGTSFLLL 136 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~ 136 (521)
+.+....+.+|+..+..+ ++-++++.+.+ +.+.+.++-+...+..++. .++.+++++|++|++++-+...
T Consensus 7 ~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~ 82 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence 334444455555554443 34556666655 3357888888887877766 8899999999999999998888
Q ss_pred HHHHHHHHHhhc----c---------------------------CHHHHHHHHHHHHhhhhh-hh-hHHHHHHhhcCCcc
Q 040770 137 LSAPAVFCMSFV----S---------------------------DAQGYIAARFMIGFCLAT-FV-SCQYWTTIMFNGKI 183 (521)
Q Consensus 137 ~~~~~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~-~~-~~~~~i~~~~~~~~ 183 (521)
.+.+..+++++. + +.|...+..+...+.... .. ....+++|.++.+|
T Consensus 83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q 162 (472)
T TIGR00769 83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE 162 (472)
T ss_pred HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 877777776654 1 123333444444444443 33 55688999999999
Q ss_pred hhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHHHHhcccCCCCCh---hh
Q 040770 184 LGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWR----IAFFIPGWLHVIMGILVLTLGQDLPDGNL---GA 256 (521)
Q Consensus 184 r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr----~~f~~~~~~~~~~~~~~~~~~~~~p~~~~---~~ 256 (521)
-.|..++...+.++|..+++.+...+........ .+...|. ..+.+.++.+++...+..++-+...+.++ .+
T Consensus 163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 241 (472)
T TIGR00769 163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLG-PGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPA 241 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchh
Confidence 9999999988888888666655544443211100 1122452 34444444434433333333222211111 11
Q ss_pred hhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH----HHHHHHHHHHHHHHhhh
Q 040770 257 LQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLH----TAGTIAATFGMANIFAR 332 (521)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~----~~~~~~~~~~~~~~~~~ 332 (521)
.++++++++.+..+.++.++++|..+.+++...+.......+....-..+.+.+- ++. ..|.+....++..++..
T Consensus 242 ~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~tl~~~ 320 (472)
T TIGR00769 242 LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVSVTMM 320 (472)
T ss_pred hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223355567889999999988887777766555544444434444555442 332 23344445556666666
Q ss_pred hhhHHHhhhhhcc
Q 040770 333 PFGGYASDVAGRL 345 (521)
Q Consensus 333 ~~~g~l~d~~~~~ 345 (521)
++.+++.+|+|-+
T Consensus 321 l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 321 LLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHhhHH
Confidence 6668888888754
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-09 Score=104.83 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=96.3
Q ss_pred hcchhchHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHh----hccCHHHH
Q 040770 80 FAAAPLVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMS----FVSDAQGY 154 (521)
Q Consensus 80 ~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~----~~~~~~~l 154 (521)
+.....+|.+ .+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++..+... ..++....
T Consensus 260 ~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (432)
T PRK10406 260 YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA 339 (432)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3344455664 466899988999988888888889999999999999999988877665443332211 12233332
Q ss_pred HHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHH
Q 040770 155 IAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGW 233 (521)
Q Consensus 155 ~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~ 233 (521)
+..-.+.+++.+. ......++.|++|++.|+.++|+.+...++ +.....|.+...+...+ .|...++..++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~---~~g~~~p~~~~~l~~~g-----~~~~~~~~~~~ 411 (432)
T PRK10406 340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA---LFGGSAEYVALSLKSIG-----METAFFWYVTL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH---HHHhHHHHHHHHHHHhC-----CCcHHHHHHHH
Confidence 2222222233333 335567889999999999999998654332 21122344444443221 36666666655
Q ss_pred HHHHHHHHHHH
Q 040770 234 LHVIMGILVLT 244 (521)
Q Consensus 234 ~~~~~~~~~~~ 244 (521)
..++..+..++
T Consensus 412 ~~~i~~~~~~~ 422 (432)
T PRK10406 412 MAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-09 Score=106.14 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=91.6
Q ss_pred HhhhhcchhchHHHHh-hcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH-H---HhhccC
Q 040770 76 FISTFAAAPLVPIIRD-NLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF-C---MSFVSD 150 (521)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~---~~~~~~ 150 (521)
...........|.+.+ .+|.+..+.++....+.++..++.+++|+++||+|||+.+..+.++..+..+ . ....++
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3334444455677655 4899999999998899999999999999999999999998876554433221 1 112345
Q ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhh-hhhHHHHhHHHHHHH
Q 040770 151 AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGD-MGGGVTQLLMPLVFE 211 (521)
Q Consensus 151 ~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~ig~~~~~~l~~ 211 (521)
+..+.+..++.|++.+. .+....++.|.+|+++|+..+++...... ++..++|.+.+.+.+
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55555556666777665 44556789999999999999998643322 234445544444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-09 Score=105.77 Aligned_cols=146 Identities=9% Similarity=-0.067 Sum_probs=109.2
Q ss_pred chHHHHhhcCCCccchhhHHHHHH-HHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh------ccCHHHHHHH
Q 040770 85 LVPIIRDNLNLTKTDVGNAGVASV-SGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF------VSDAQGYIAA 157 (521)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 157 (521)
..+.+.+|.|++++++|++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... .++.+.++..
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 345666778999999999888776 466778899999999999999998877665333332221 2344445555
Q ss_pred HHHHHhhhhh-hhhHHHHHHhhcCC-cchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH
Q 040770 158 RFMIGFCLAT-FVSCQYWTTIMFNG-KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLH 235 (521)
Q Consensus 158 r~l~G~~~~~-~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (521)
.++.+++.+. .+.....+.+..++ +++++.+++.++..++|..+|+.+++.+.+.. ||+..|++.+++.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~---------G~~~~f~~~~~~~ 380 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF---------GYAGGFLSGTVLA 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccHHHHHHHHHHH
Confidence 5666677674 56667777777765 88999999999999999999998888877765 8999998887765
Q ss_pred HHHH
Q 040770 236 VIMG 239 (521)
Q Consensus 236 ~~~~ 239 (521)
++..
T Consensus 381 l~a~ 384 (390)
T TIGR02718 381 VLAI 384 (390)
T ss_pred HHHH
Confidence 5543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=111.31 Aligned_cols=133 Identities=22% Similarity=0.220 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCH--HHHHHHHHHHHhhhhh-hhhHHHHHHhh
Q 040770 102 NAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDA--QGYIAARFMIGFCLAT-FVSCQYWTTIM 178 (521)
Q Consensus 102 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~-~~~~~~~i~~~ 178 (521)
+...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+. ++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777888999999999999999999999999988888776644 4455555666666664 66778899999
Q ss_pred cCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 179 FNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 179 ~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
+|++.|+.++|+.+....+|..++|.+.+ +... ++..++++.++..++.+++.+++
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK----------WLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH----------HHhhHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988888877776655 2221 56778888888777776665544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-10 Score=108.43 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=104.2
Q ss_pred HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc
Q 040770 295 ELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES 374 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (521)
.......+|.+ .+.+|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+.++..++.++....++
T Consensus 21 ~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~~~ 92 (385)
T TIGR00710 21 IDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP-------VLLLGLFIFALSSLGLALSNN 92 (385)
T ss_pred HHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-------HHHHHHHHHHHHHHHHHHHcc
Confidence 33344445554 4557999999999999999999999999999999999986 666666666777777777778
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 375 LPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.+...+..++.|++.+...+...+++.+ .|+++|+++.++.+....+|..++|.+.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 149 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLG 149 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888998888888877777765 4888999999999999999999988873
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-09 Score=101.35 Aligned_cols=146 Identities=10% Similarity=0.061 Sum_probs=121.1
Q ss_pred CccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHH
Q 040770 96 TKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYW 174 (521)
Q Consensus 96 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~ 174 (521)
++..+|.+.+...+.-++...+..++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+. ..+...|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999999999999996 7789999
Q ss_pred HHhhcCCcchhhHHHHh-hhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCC
Q 040770 175 TTIMFNGKILGLVNGCA-GGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLP 250 (521)
Q Consensus 175 i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p 250 (521)
+++.+|++-.+....+. +...++|..+.+.+++.+.+.+ |.+..|++.+.+.++..++..+.+++.+
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~---------G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI---------GFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc---------CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 99999988877777764 5666777777777666666665 8899999999998888888888765533
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=105.64 Aligned_cols=142 Identities=18% Similarity=0.321 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHH
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQ 359 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (521)
.++..++..+..+...+.+..++|.++++.+|+++.+.+++.+...++.+++.++.|+++||+|||+ .+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~ 74 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY-------TTTLSL 74 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHH
Confidence 3566667777777777788888888788889999999999999999999999999999999999986 666667
Q ss_pred HHHHHHHHHhhccC-cHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 360 TLGGVFCVWLGRAE-SLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++..++.++....+ +.+.+++..++.|++.+. ......++. ..++++|+.+.++.....++|..+++.+
T Consensus 75 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 77777777776677 777777777777877543 344445555 4478899999999887777766666554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-09 Score=104.21 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=113.8
Q ss_pred ccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q 040770 264 NKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAG 343 (521)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 343 (521)
+.+++|+.--+..-+|.++...+.....+...+.+....+.+-++.+|++..+.+++.++..++..+.++..|++.||+|
T Consensus 19 e~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G 98 (462)
T PRK15034 19 ENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFG 98 (462)
T ss_pred CChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444333334456777776666666666666655555555468999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhh
Q 040770 344 RLFGMRGRLWTLWIFQTLGGVFCVWLGRA-----ESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGA 417 (521)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~ 417 (521)
.|+ +..++.++..+..+...+. ++++.+++.-++.|++ +..++.....+. ..|+++||++.|+...
T Consensus 99 ~R~-------v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g 170 (462)
T PRK15034 99 GRR-------WTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGG 170 (462)
T ss_pred ChH-------HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHH
Confidence 985 5555555555555555543 6788888888888887 556666666666 4588999999999977
Q ss_pred hhhHHHHhhhhh
Q 040770 418 GGNFGSGLTQLA 429 (521)
Q Consensus 418 ~~~~g~~i~~~l 429 (521)
.+++|..+++.+
T Consensus 171 ~G~~G~~l~~~l 182 (462)
T PRK15034 171 LGNLGVSVMQLV 182 (462)
T ss_pred HHhhHHHHHHHH
Confidence 777766655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=107.51 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=97.6
Q ss_pred CccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc-cCHHHHHHHHHHHHhhhhh-hhhHHH
Q 040770 96 TKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV-SDAQGYIAARFMIGFCLAT-FVSCQY 173 (521)
Q Consensus 96 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (521)
+..+.+++.++..++..++.++++++.||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+. .+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999999999999999999999999888888777665 4667777888888999885 667778
Q ss_pred HHHhhcC-------CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 174 WTTIMFN-------GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 174 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8887764 456799999999999999998888777776543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=106.00 Aligned_cols=138 Identities=13% Similarity=-0.002 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHH
Q 040770 284 FFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGG 363 (521)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 363 (521)
..+.+++.+.-........| .+.+.+|.+..+.+++.+.+.++..++.++.|++.||+|||+ .+..+.++.+
T Consensus 13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-------~~~~~~~~~~ 84 (412)
T TIGR02332 13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-------WIAGIMVLWG 84 (412)
T ss_pred HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-------HHHHHHHHHH
Confidence 33333333333444444444 677788999999999999999999999999999999999986 6677777777
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 364 VFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.++..+.++.+.+++.-++.|++.+...+....++.+ .|+++|+.+.|+.+....+|..+++.+
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888888889999998888877777665 488899999999999999999888887
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=120.83 Aligned_cols=145 Identities=17% Similarity=0.082 Sum_probs=119.6
Q ss_pred HHHHhhcCCCcc-chhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhh
Q 040770 87 PIIRDNLNLTKT-DVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCL 165 (521)
Q Consensus 87 ~~~~~~~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 165 (521)
+.+.+++|.+.. +.+++.+...++..++.+++|++.||+++++.+.++.++.+++.++..+..+++.++++.++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445677899998 9999999999999999999999999999999999999999988888888889999999999999998
Q ss_pred hh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH
Q 040770 166 AT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMG 239 (521)
Q Consensus 166 ~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (521)
+. .++..+++.+.+|+++||+++++.+....+|..+++.++.++... ..++...|++.+.+.++..
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--------GLSPAGLFYLIALVTLIGT 403 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------ccCHHHHHHHHHHHHHHHH
Confidence 86 567788999999999999999999988888887776666554431 0156666766665544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-09 Score=106.15 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=91.4
Q ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHH
Q 040770 297 TTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLP 376 (521)
Q Consensus 297 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (521)
....++|. +.+.+|++..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++.++.....+.+
T Consensus 54 ~~~~~~~~-l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~-------~~~~~~~~~~~~~~~~~~~~s~~ 125 (476)
T PLN00028 54 AAAPLLPI-IRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY-------GSAFLLMLTAPAVFCMSLVSSAT 125 (476)
T ss_pred HHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-------HHHHHHHHHHHHHHHHHHhcCHH
Confidence 33334444 45667999999999988899999999999999999999985 55556666666666666677777
Q ss_pred HHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+++..++.|++.+...+ ...++. ..|++.||.+.|+.+...++|+.+++.+
T Consensus 126 ~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~ 178 (476)
T PLN00028 126 GFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL 178 (476)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777654333 233344 4588999999999988877777776554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-08 Score=99.48 Aligned_cols=160 Identities=12% Similarity=0.025 Sum_probs=117.8
Q ss_pred hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh-cCCcHHHHHHHHHHHHHHHHHhhccC--------HHHH
Q 040770 84 PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL-IGPRYGTSFLLLLSAPAVFCMSFVSD--------AQGY 154 (521)
Q Consensus 84 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l 154 (521)
.+...+.+.+|.+.+....+...+....-+..+++|+++|+ +|+++.+.++.++..+|.++.+++.. ...+
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 34455666789999888888888888888899999999997 59999999999999999988877421 2235
Q ss_pred HHHHHHHHhhhhh-hhhHHHHHHhhcCCcc---hhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHH
Q 040770 155 IAARFMIGFCLAT-FVSCQYWTTIMFNGKI---LGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFI 230 (521)
Q Consensus 155 ~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~ 230 (521)
+++-.+..+|.|+ -+...+...|.+++++ |-..+.++..+.++|+.+++.+.+.+...... .....+|...|.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~--fg~~~~~~~aF~i 166 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC--FGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccCcchHHHHHH
Confidence 5666777777776 4567788999887543 56677778778888887777666665432210 0113379999999
Q ss_pred HHHHHHHHHHHHHHh
Q 040770 231 PGWLHVIMGILVLTL 245 (521)
Q Consensus 231 ~~~~~~~~~~~~~~~ 245 (521)
.++..++..++....
T Consensus 167 ~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 167 PAILMILALIVFMAG 181 (654)
T ss_pred HHHHHHHHHHHHHHh
Confidence 998877766655543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-07 Score=89.68 Aligned_cols=351 Identities=12% Similarity=0.031 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCC-CccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNL-TKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
...++...++...+.-++.+..+.+..+..- +---.+...-.-.+...+.++..|.+.||..|.+++..+.+.--++.+
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 4455677777777766777777777776632 222233344444556677888899999999999998777665433322
Q ss_pred HHh------hc--c----CHHHHHHHHH---HHHhhhhhhhhHH--HHHHhhc------CCcchhhHHHHhhhhhhhhhH
Q 040770 144 CMS------FV--S----DAQGYIAARF---MIGFCLATFVSCQ--YWTTIMF------NGKILGLVNGCAGGWGDMGGG 200 (521)
Q Consensus 144 ~~~------~~--~----~~~~l~~~r~---l~G~~~~~~~~~~--~~i~~~~------~~~~r~~~~~~~~~~~~~G~~ 200 (521)
+.+ +. + +-+....+.. +.|.-.-....+. ++=.||. +++.+.+.++...-.--+.-+
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 221 11 1 1222222222 2221111111111 2223342 344556666666555455565
Q ss_pred HHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcc----cCCCCChhhhh---ccCC--------Ccc
Q 040770 201 VTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQ----DLPDGNLGALQ---KKGN--------VNK 265 (521)
Q Consensus 201 ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~---~~~~--------~~~ 265 (521)
++|++.+.+.... +.+...++.++..++..++=++++. ..|+-..++.+ +... +..
T Consensus 164 laPl~vG~l~t~~---------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
T PF06963_consen 164 LAPLFVGLLMTFA---------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSD 234 (432)
T ss_pred HHHHHHHHHhhcc---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccch
Confidence 6665554444322 7777777777776665555444322 22321111100 0000 000
Q ss_pred ccc-----------hhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 040770 266 DKF-----------SKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPF 334 (521)
Q Consensus 266 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 334 (521)
... .+.++..+++| ++...+...+.++...++......|+... |+++...|.+-....+.++.|.++
T Consensus 235 ~~~~~~~~~~~~~~~~~w~~Y~~q~-vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~ 312 (432)
T PF06963_consen 235 PSILKRLWNPLRTIIRGWRTYFRQP-VFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWV 312 (432)
T ss_pred hhHHHHHHHHHHHHhccHHHHHhCH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11223334444 44455555555555666777888888887 999999999999999999999999
Q ss_pred hHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcH---H---HHHHHHHHHHhhhhhcccccccccc-cccccc
Q 040770 335 GGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESL---P---IAVVAMVLFSMGTQAACGATFGIVP-FVSRRS 407 (521)
Q Consensus 335 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~ 407 (521)
..++.+|+|..+ .-.+.+..-.....++...+....+. . .+...+++.=+|.-+.--...-+++ .+|+++
T Consensus 313 ~p~l~~riGlvr---~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~ 389 (432)
T PF06963_consen 313 YPWLMKRIGLVR---AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE 389 (432)
T ss_pred HHHHHHHhcchh---hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH
Confidence 999999999654 11122211111222222222222221 2 1222222222222222222233344 579999
Q ss_pred hhhhhhhhhhhhhHHHHhhhhh
Q 040770 408 LGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 408 ~~~~~g~~~~~~~~g~~i~~~l 429 (521)
||...|+-+...++...+.-.+
T Consensus 390 Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 390 RGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988766655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-09 Score=102.98 Aligned_cols=134 Identities=13% Similarity=-0.032 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 040770 289 GFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW 368 (521)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (521)
+............+|.+..+ +|.+..+.++..+...++..++.++.|+++||+|||+ .+..+.++..++.++
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-------~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP-------VAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH-------HHHHHHHHHHHHHHH
Confidence 33333444444566666555 6999999999999999999999999999999999985 566666666666666
Q ss_pred hhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 369 LGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
....++.+..++..++.|++.+...+...+++.+ .++++|+++.++.+....++..++|.+.
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777778888877777777777664 5889999999999999999988888873
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-09 Score=105.38 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=104.8
Q ss_pred hcchhchHHHHh-hcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH---HHHHHHhh--ccCHHH
Q 040770 80 FAAAPLVPIIRD-NLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA---PAVFCMSF--VSDAQG 153 (521)
Q Consensus 80 ~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~~~--~~~~~~ 153 (521)
+......|.+.+ ..|.+..+.++....+.++..++.+++|++.||+++++....+..+.. ++.++... ..+.+.
T Consensus 268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T TIGR00712 268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV 347 (438)
T ss_pred HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 334445666555 478999999999999999999999999999999975432222322221 12222222 234444
Q ss_pred HHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhh-hHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 040770 154 YIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMG-GGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP 231 (521)
Q Consensus 154 l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (521)
..+..++.|++..+ .........|.+|+++|+.++|+.+....+| ..+++.+.+.+.+.. ||...|++.
T Consensus 348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~---------g~~~~~~~~ 418 (438)
T TIGR00712 348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---------GWDGGFMVM 418 (438)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc---------cchHHHHHH
Confidence 44444555554332 2233356789999999999999998777766 457777776666643 899999988
Q ss_pred HHHHHHHHHHHHHhc
Q 040770 232 GWLHVIMGILVLTLG 246 (521)
Q Consensus 232 ~~~~~~~~~~~~~~~ 246 (521)
+++.++..+..+++.
T Consensus 419 ~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 419 IGGSILAVILLIVVM 433 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777666666663
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-09 Score=103.62 Aligned_cols=143 Identities=9% Similarity=-0.004 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHH
Q 040770 279 YRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIF 358 (521)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (521)
+.++.+.+..++...........+|.+. +++|.+..+.++..+...++..++.++.|++.||+|||+ .+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~ 74 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH-------ILLFL 74 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH-------HHHHH
Confidence 3456666666666666666666777655 457999999999999999999999999999999999986 66677
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 359 QTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..+.+++.++....++.+.+++..++.|++.+...+.....+.+. ++++|+.+.++......++..++|.+
T Consensus 75 ~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 75 VALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 777777777777888898888888899988877766665565544 67788999999988888999888877
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=100.28 Aligned_cols=145 Identities=10% Similarity=0.043 Sum_probs=109.9
Q ss_pred hHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhh
Q 040770 86 VPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCL 165 (521)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 165 (521)
.|.+.+++|++..+.+++...+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 47777889999999999999999999999999999999965444444333334444555556678888888899999988
Q ss_pred hh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 040770 166 AT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI 240 (521)
Q Consensus 166 ~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 240 (521)
+. .+...+++.+..| ++++++.++.....++|..+|+.+++.+.+.. |++..++..+++.++..+
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~---------g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI---------GLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------ChhhHHHHHHHHHHHHHH
Confidence 85 5567778888886 56778888877777888888887777776543 888888887766555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=100.05 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=100.2
Q ss_pred hHHHHhhcCCCccchhhHHHHH-HHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHH---hhc-cCHHHHHHHHHH
Q 040770 86 VPIIRDNLNLTKTDVGNAGVAS-VSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCM---SFV-SDAQGYIAARFM 160 (521)
Q Consensus 86 ~~~~~~~~~~s~~~~~~~~s~~-~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l 160 (521)
.+.+.+++|+++.+++++.+.. .++..++.+++|++.||+|+|+.+.++.++..+..+.. ++. ++.+.+++.-++
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3456777999999999988665 45688999999999999999998887777666554333 344 466666666544
Q ss_pred HH----hhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH
Q 040770 161 IG----FCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLH 235 (521)
Q Consensus 161 ~G----~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (521)
++ ++.+. ......++.+.+|.++++ +.+...++|..+++.+++.+.+.. ||+..|.+.++++
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~---------G~~~~f~~~~~~~ 379 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAY---------GWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh---------ChHHHHHHHHHHH
Confidence 44 44443 345566777777655544 444444566665555666666655 9999999988887
Q ss_pred HHHHHHHHHh
Q 040770 236 VIMGILVLTL 245 (521)
Q Consensus 236 ~~~~~~~~~~ 245 (521)
++..++.+..
T Consensus 380 ~~~~~~~~~~ 389 (402)
T PRK11902 380 LPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHH
Confidence 7665554443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-07 Score=87.14 Aligned_cols=308 Identities=14% Similarity=0.059 Sum_probs=178.4
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhc
Q 040770 101 GNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMF 179 (521)
Q Consensus 101 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~ 179 (521)
+.+.-+-.+...+.-+.+.++.+|+..+.=+....+++.++.++.++++|.+.-+++-++.+++.|. ......+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 4456666677778888888999999866666777778889999999999999989999999999884 5555555 4456
Q ss_pred CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChh-hhh
Q 040770 180 NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLG-ALQ 258 (521)
Q Consensus 180 ~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 258 (521)
++ ...+-+.++.+.++ ++++.....+... +. +-|..+.+...+.++..+..+++++..+..... +.+
T Consensus 141 ~~----~~l~~wssGTG~aG----l~Ga~~y~~lT~~---g~-s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~ 208 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAG----LVGALYYLGLTTL---GL-SPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESE 208 (402)
T ss_pred Cc----cccccccCCcChhh----HHHHHHHHHHHHh---Cc-CHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccC
Confidence 43 23555544444445 4444444333221 11 447788887777666666666665543221110 000
Q ss_pred ------ccC-----CCcc--ccchhhHHhhh-chhHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHhcCCC-HHHHHHHHH
Q 040770 259 ------KKG-----NVNK--DKFSKVFWYGI-KNYRTWVFFVLYGFSMGIELTTNNI-ISEFMYDRFNLK-LHTAGTIAA 322 (521)
Q Consensus 259 ------~~~-----~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~g~s-~~~~~~~~~ 322 (521)
++. .+.+ ......+++-+ +-+..+...+-.++.+...+.++.- .+.........+ .....+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~ 288 (402)
T PF02487_consen 209 SEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQL 288 (402)
T ss_pred CCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHH
Confidence 000 0000 00011111111 1122232444444455555544332 233322211222 344556666
Q ss_pred HHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHH---hhccCcHHHHHHHHHHHHhhhhhcccccccc
Q 040770 323 TFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVW---LGRAESLPIAVVAMVLFSMGTQAACGATFGI 399 (521)
Q Consensus 323 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 399 (521)
.+.++-.+++--..++ |+ | +++++.+...+-.+.+++ +.+.++.|...+.++..|+..|+.+...+..
T Consensus 289 ~YQ~GVFISRSS~~~~--ri--r-----~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 289 LYQLGVFISRSSLPFF--RI--R-----RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHhhhhcceeee--eh--h-----hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7777766666433221 22 1 234444444433333322 3345677777778888888888888777666
Q ss_pred cc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 400 VP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 400 ~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+. +.++++|-.++|.....-.+|..++..+.
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 54 77899999999999999999888888763
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-08 Score=86.32 Aligned_cols=320 Identities=10% Similarity=0.057 Sum_probs=177.4
Q ss_pred hhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 040770 78 STFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAA 157 (521)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (521)
....-+|.+-.+-+.++....++|.+.-+..-...+...+.|-++||-|||+.-+.-++.+.++++ .-.++.|-.++++
T Consensus 52 gDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVG 130 (454)
T KOG4332|consen 52 GDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVG 130 (454)
T ss_pred hhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeeh
Confidence 334455666677788899999999988888888888888999999999999987766666665544 3457899999999
Q ss_pred HHHHHhhhhh-hhhHHH-HHHhhcCCcchhhHHHHhhh----hhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 040770 158 RFMIGFCLAT-FVSCQY-WTTIMFNGKILGLVNGCAGG----WGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP 231 (521)
Q Consensus 158 r~l~G~~~~~-~~~~~~-~i~~~~~~~~r~~~~~~~~~----~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (521)
|++-|+..+. +.+..+ +++|.. ++|+.-.-+... ...+|..+-.+++++.++.+.++. +. |--.+|-..
T Consensus 131 R~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~--sl-GPVAPFdAA 205 (454)
T KOG4332|consen 131 RVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF--SL-GPVAPFDAA 205 (454)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cc-CCCCchHHH
Confidence 9999999995 666655 567765 233322222211 112333333444445555443221 11 444455444
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhc
Q 040770 232 GWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNN-IISEFMYDRF 310 (521)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 310 (521)
+.+..+...++ ++.-.|.-.++ .+++ .-...+....+.+..+.++.++..+..++-+..+.+.. |.|..--+..
T Consensus 206 acfLaigmAvi---l~~W~ENygdp-s~~k-dlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e 280 (454)
T KOG4332|consen 206 ACFLAIGMAVI---LSSWSENYGDP-SENK-DLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 280 (454)
T ss_pred HHHHHHHHHHH---HhhhhhccCCh-hhhH-HHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcc
Confidence 33322222222 12112211000 0000 00111223345566777777776666666555554433 3332221222
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh--hc--cC---cHHHHHHHHH
Q 040770 311 NLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL--GR--AE---SLPIAVVAMV 383 (521)
Q Consensus 311 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~---~~~~~~~~~~ 383 (521)
+.+ -|.+.+.+.++.++|+-+..++..|-..|.- ....+.+.+..+.+.+. .. .+ ++....+.++
T Consensus 281 ~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve-----~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~ 352 (454)
T KOG4332|consen 281 EIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVE-----SYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFC 352 (454)
T ss_pred cCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccc-----hHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHH
Confidence 222 4677777888888888777777665444321 12222222222222222 11 11 3334456666
Q ss_pred HHHhhhhhcccccccccc-cccccchhhhhhhhh
Q 040770 384 LFSMGTQAACGATFGIVP-FVSRRSLGILSGLTG 416 (521)
Q Consensus 384 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 416 (521)
++-...+..+|..+-+-. .+|.+.|++.+-...
T Consensus 353 ~~E~cvGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 353 LFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 666777778887776644 558888776554433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-09 Score=102.76 Aligned_cols=131 Identities=15% Similarity=0.009 Sum_probs=98.7
Q ss_pred HHHHHHHhhhHHHH--HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 040770 292 MGIELTTNNIISEF--MYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL 369 (521)
Q Consensus 292 ~~~~~~~~~~~~~~--l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (521)
...+.....+.|.+ +.+.+|.++.+.++..++..++..++.++.|+++||++||+ .+..+..+..++.++.
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~ 88 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP-------VLLAGLSLFALGSLGM 88 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH-------HHHHHHHHHHHHHHHH
Confidence 33344444555544 55667999999999999999999999999999999999986 5556666666666666
Q ss_pred hccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 370 GRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
...++.+.+++..++.|++.+...+...+++. ..+++.++...+..+....++..++|.+
T Consensus 89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 149 (401)
T PRK11043 89 LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLL 149 (401)
T ss_pred HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777878776665555555555 4577778888888888888888888887
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-08 Score=95.50 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhhhcchhchHHHHh---hcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRD---NLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
..++.++............+.+.+ .+|+++.+.++..+.+..+..++.+..+++.||+|+|+.+.++.++..++.++
T Consensus 145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l 224 (310)
T TIGR01272 145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG 224 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 344444444334444444455554 36899999999999999999999999999999999999999988888888777
Q ss_pred HhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 145 MSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
....++...+ .+-++.|++.+. +|...+...+..++ +.+.+.++. ....+|..+.|.+.+.+.+.. |
T Consensus 225 ~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~---------g 292 (310)
T TIGR01272 225 AALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL---------G 292 (310)
T ss_pred HHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc---------c
Confidence 7666654433 355578888885 77888888887754 345566664 345577766665555554433 7
Q ss_pred chHHHHHHHH
Q 040770 224 WRIAFFIPGW 233 (521)
Q Consensus 224 wr~~f~~~~~ 233 (521)
.+..|++..+
T Consensus 293 ~~~a~~v~~~ 302 (310)
T TIGR01272 293 IQLAFALPVP 302 (310)
T ss_pred chHHHHHHHH
Confidence 7888875433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-09 Score=97.13 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=119.7
Q ss_pred HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-
Q 040770 89 IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT- 167 (521)
Q Consensus 89 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~- 167 (521)
-.+++|++..++.++.....+..+++++++|++.||+|.|+++..+++++.+.++..-+...-..+.++-.+.|+..|+
T Consensus 279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~ 358 (438)
T COG2270 279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA 358 (438)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence 3459999999999999999999999999999999999999999999999999999888888777788888999999997
Q ss_pred hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHH
Q 040770 168 FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWL 234 (521)
Q Consensus 168 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~ 234 (521)
...+.++.++.+|+++-++.+|++......+..+||++.+.+.+... +-|..+....++
T Consensus 359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--------~~r~g~~~i~vl 417 (438)
T COG2270 359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--------SSRAGVLSIIVL 417 (438)
T ss_pred HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--------chhhHHHHHHHH
Confidence 67889999999999999999999999999999888877766666543 456666555444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-09 Score=104.76 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=114.2
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh-hhcccccchhHH
Q 040770 276 IKNY-RTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDV-AGRLFGMRGRLW 353 (521)
Q Consensus 276 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~ 353 (521)
+++| .++..++..++....++.+..+++.|+.+.+|++..+++.+...+........+++|+++|| +|||+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~------- 89 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR------- 89 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-------
Confidence 3555 47777777777888888888999999999999999988887776665555556789999999 59985
Q ss_pred HHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHhhhhhcccccccccccc-ccc--chhhhhhhhhhhhhHHHHhhhhh
Q 040770 354 TLWIFQTLGGVFCVWLGRAE-SLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRR--SLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+..+.++.+++..++.... +.+.+++..++.+++.+...+...++..+. |++ .+..+.++.+...++|..++|.+
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i 169 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA 169 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence 56666666666655555543 344455566777888777777666666644 432 34567888899999999999987
Q ss_pred H-hcccchhHHHHHHH
Q 040770 430 F-FSNSKFSTATGISL 444 (521)
Q Consensus 430 ~-~~~~~~~~~~~~~~ 444 (521)
. ...+.+++...+.+
T Consensus 170 ~g~l~~~~g~~~~F~i 185 (500)
T PRK09584 170 TPWLAAKYGWSVAFAL 185 (500)
T ss_pred HHHHHHhhCHHHHHHH
Confidence 3 33333444444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=99.27 Aligned_cols=174 Identities=14% Similarity=0.182 Sum_probs=131.4
Q ss_pred HHHHHHhhhhcchhchHHHHhhcC-CCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc-
Q 040770 71 SFFTCFISTFAAAPLVPIIRDNLN-LTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV- 148 (521)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 148 (521)
..++.......+....+.+.++.| .+....+.+.++..+.=.+.-...+++..|+|.|+++.++.+.+++=..+.+..
T Consensus 215 ~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~ 294 (400)
T PF03825_consen 215 AAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS 294 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444445566677777 677777888888888888888999999999999999999999999999888887
Q ss_pred cCHHHHHH----HHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhh-hhhhhHHHHhHHHHHHHHHHHhCCCCCC
Q 040770 149 SDAQGYIA----ARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGW-GDMGGGVTQLLMPLVFEVIKLAGATPFT 222 (521)
Q Consensus 149 ~~~~~l~~----~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~ig~~~~~~l~~~~~~~~~~~~~ 222 (521)
++.+...+ ...++|+..+. ..++..++.+..|++.|+++.+++... .++|..+|.++++.+.+... ..+..
T Consensus 295 ~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g---~~~~~ 371 (400)
T PF03825_consen 295 DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG---ARGMF 371 (400)
T ss_pred CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---chhhh
Confidence 55554333 34569999996 778999999999999999999998764 57888888888887777552 12233
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcc
Q 040770 223 AWRIAFFIPGWLHVIMGILVLTLGQ 247 (521)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~ 247 (521)
.|...+.+.+++.++..++.+++.|
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5777787887777766666655543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-09 Score=117.95 Aligned_cols=151 Identities=9% Similarity=-0.023 Sum_probs=116.8
Q ss_pred hchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc--------------
Q 040770 84 PLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV-------------- 148 (521)
Q Consensus 84 ~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------------- 148 (521)
..+|.+. +.+|.+..+.|++.+.+.++.+++.++.|++.|+.++++.+..+.++.+++.+..++.
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI 325 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence 3455544 5589999999999999999999999999999999887777776666666655544443
Q ss_pred ------cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCC
Q 040770 149 ------SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPF 221 (521)
Q Consensus 149 ------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~ 221 (521)
++.+.++++.++.|++.+. .++..+++.+.+|+++||+++|+.+....+|..+++++++.+... .
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~--------~ 397 (1140)
T PRK06814 326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL--------G 397 (1140)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh--------c
Confidence 6778888889999999886 667889999999999999999999998888888888766655432 1
Q ss_pred CCchHHHHHHHHHHHHHHHHH
Q 040770 222 TAWRIAFFIPGWLHVIMGILV 242 (521)
Q Consensus 222 ~~wr~~f~~~~~~~~~~~~~~ 242 (521)
.++...|++.+++.++.+++.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~ 418 (1140)
T PRK06814 398 FSIPWIILFIALANLIVAILI 418 (1140)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 166777766666544444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=101.74 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=96.8
Q ss_pred HhhhhcchhchHHHHhhcCCCccchhhHHHHHH-HHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc------
Q 040770 76 FISTFAAAPLVPIIRDNLNLTKTDVGNAGVASV-SGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV------ 148 (521)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------ 148 (521)
...........|.+.+++|.+..+.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+.
T Consensus 222 ~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (356)
T TIGR00901 222 KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH 301 (356)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 333334445566666779999999998887665 6788999999999999999999999888888776655543
Q ss_pred -----cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhh
Q 040770 149 -----SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWG 195 (521)
Q Consensus 149 -----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 195 (521)
++.+.+..+.++.+++.+. .+...+++.|.+|+++||+.+++.++..
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 302 DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 4567788888999999885 7788999999999999999999987654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-09 Score=101.18 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=102.7
Q ss_pred hhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc-CCcHHHHHHHHHHHHHHHHHhhccCHHHHHH
Q 040770 78 STFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-GPRYGTSFLLLLSAPAVFCMSFVSDAQGYIA 156 (521)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (521)
........+|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+ +||+.+.++.++.+++.++..+.++.+...
T Consensus 212 ~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (355)
T TIGR00896 212 LYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA- 290 (355)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence 333444556777778899999999999999999999999999999999 567777788888888877777765544332
Q ss_pred HHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 157 ARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 157 ~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
.-++.|++.+. ++.....+.+.. ++++++...++.+....+|..++|.+.+.+.+..
T Consensus 291 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 291 WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678998885 566666666555 4566789999888877888878887777666654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-09 Score=96.97 Aligned_cols=172 Identities=20% Similarity=0.220 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
.+.+++.++..+-....++..+|. ++++|++++.+.|.....+.+...+..+.+|+++||+|.+|++.+....++++..
T Consensus 220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~ 299 (417)
T COG2223 220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA 299 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence 344455566666555556666666 5678999999999999999999999999999999999999999999999988888
Q ss_pred HHhhc-------cCHHHHHHHHHHHHhhhh-hhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHH
Q 040770 144 CMSFV-------SDAQGYIAARFMIGFCLA-TFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKL 215 (521)
Q Consensus 144 ~~~~~-------~~~~~l~~~r~l~G~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 215 (521)
+.++. .+...+++.-+..++..| +.-.+..++...+ +++-|.+.|+.....++|...-|...+...+ .
T Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~---~ 375 (417)
T COG2223 300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLD---L 375 (417)
T ss_pred HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHH---h
Confidence 87775 344444444444444444 2335566666667 4478999999988888887544443222222 2
Q ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 216 AGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 216 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
.+ .+...|++...+.+++.+..+..
T Consensus 376 tg-----~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 376 TG-----SYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred cc-----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 59999999998888777766554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=104.38 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHH
Q 040770 283 VFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLG 362 (521)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 362 (521)
.+++..++...-......-+|.+.. .+|.+..+.+++.+.+.++.....++.|+++||+|||+ .+..+..+.
T Consensus 10 ~~~~~~~~~~ld~tiv~~a~p~i~~-~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-------~l~~~~~~~ 81 (495)
T PRK14995 10 IIVLVYIPVAIDATVLHVAAPTLSM-TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR-------LLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHH
Confidence 3344444444444555566777765 47999999999999999999999999999999999986 677777777
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccc-ccc-cccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHH
Q 040770 363 GVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIV-PFV-SRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTA 439 (521)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~ 439 (521)
.++.++....++.+.+++.-++.|++.+...+.....+ ... ++++|+++.|+......+|..++|.+. ...+.+++.
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr 161 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG 161 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence 77777788888988888888899998888777666654 444 678999999999999999999999983 333334444
Q ss_pred HHHH
Q 040770 440 TGIS 443 (521)
Q Consensus 440 ~~~~ 443 (521)
+.+.
T Consensus 162 ~~f~ 165 (495)
T PRK14995 162 SVFL 165 (495)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=103.07 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh-hhcccccchhHHHHHH
Q 040770 279 YRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDV-AGRLFGMRGRLWTLWI 357 (521)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 357 (521)
+.++.+++..++....++....+++.|+++.+|++..++.++...+.....+..+++|+++|| +|||+ .+.+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~-------~~~~ 86 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR-------TIVL 86 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH-------HHHH
Confidence 356666667677778888888999999999999999999988888887888888899999999 99986 6667
Q ss_pred HHHHHHHHHHHhhccCc-HHHHHHHHHHHHhhhhhccccccccccc-cccc--chhhhhhhhhhhhhHHHHhhhhhH-hc
Q 040770 358 FQTLGGVFCVWLGRAES-LPIAVVAMVLFSMGTQAACGATFGIVPF-VSRR--SLGILSGLTGAGGNFGSGLTQLAF-FS 432 (521)
Q Consensus 358 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~--~~~~~~g~~~~~~~~g~~i~~~l~-~~ 432 (521)
+.++..++.++.....+ ...+++...+.+++.+...+...+++.+ +|++ +|+.+.++.....++|..++|.+. ..
T Consensus 87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666555544 2334456777788888888877777765 4554 457789999999999999988873 22
Q ss_pred ccchhHHHHHHH
Q 040770 433 NSKFSTATGISL 444 (521)
Q Consensus 433 ~~~~~~~~~~~~ 444 (521)
.+.+++.+.+.+
T Consensus 167 ~~~~gw~~~F~i 178 (489)
T PRK10207 167 ADKFGYSVTYNL 178 (489)
T ss_pred HHhhChHHHHHH
Confidence 233344444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-09 Score=105.47 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=110.8
Q ss_pred HHHHhhhhcchhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh----
Q 040770 73 FTCFISTFAAAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF---- 147 (521)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---- 147 (521)
++..+........+|.+. +.+|.++.+.++......++..++.++.|++.||+|||+.+.++.++.+++.++..+
T Consensus 265 ~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (485)
T TIGR00711 265 SLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP 344 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 333333333344556654 458999999999999999999999999999999999999999999988888887763
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
..+++.+....++.|++.+. .++......+..|+++|+.+.++.+....+|..+|+.+.+.+..
T Consensus 345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677777888999999986 55666777788899999999999999988998888766555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.9e-08 Score=88.18 Aligned_cols=356 Identities=11% Similarity=0.043 Sum_probs=192.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhh-----hcCCcHHHHH-
Q 040770 60 PHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCD-----LIGPRYGTSF- 133 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~- 133 (521)
.+++.+..+.+.+.+.+.-..... .+|.+.+.=|+|.++.+....+ +..+. .-++|.++.| |+||||.-++
T Consensus 28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~a-y~P~s-LKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFA-YWPFS-LKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhh-hhHHH-HHHHHHhhhHHHHHHhhccccceeee
Confidence 344556667777888888777776 8899998888888888764433 33332 4578899999 9999887543
Q ss_pred HHHHHHHHHHHHhh-----------ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHH
Q 040770 134 LLLLSAPAVFCMSF-----------VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGV 201 (521)
Q Consensus 134 ~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 201 (521)
+..+.+..+.+.+. .++...+...-++.-+..+. -.+.-.+.-.+..+++.|-+......+.++|..+
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 33333333333332 23333343444555556665 4466677777888899998888887777777766
Q ss_pred HHhHHHHHH-----H-HHHHhCC-CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHh
Q 040770 202 TQLLMPLVF-----E-VIKLAGA-TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWY 274 (521)
Q Consensus 202 g~~~~~~l~-----~-~~~~~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 274 (521)
+..+.-.+- + ++-.... .+...-...+++.+.+.++...+..++.++.+++ ..++.+....+..+.++.
T Consensus 185 ~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~----~~~e~~~~i~~~yk~l~~ 260 (510)
T KOG3574|consen 185 GNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES----VDEELELGIHESYKLLRD 260 (510)
T ss_pred hcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh----hhhhhhcCHHHHHHHHHH
Confidence 553221111 0 0100000 0000111233445555555555555554443333 122222223333456777
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhccc-cc---ch
Q 040770 275 GIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLF-GM---RG 350 (521)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~---~~ 350 (521)
+++-|.+...+......-..+.+-....+.-+.|. |++...-+++... .+.-++..+++.-|+...+ ++ .+
T Consensus 261 vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~----~~plqI~l~~~~gk~ta~~~pl~~~lk 335 (510)
T KOG3574|consen 261 VLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVP----LVPLQIALPLYIGKWTAGPRPLNVFLK 335 (510)
T ss_pred HHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeeee----hhhHHHhhhhhheeecCCCCcchHHHH
Confidence 88888888777777777666766666667777775 9998887775533 3334444444444443211 11 01
Q ss_pred hHHHHHHHHHHHHHHHHHh-h-ccC---cHH--HHHHH---HHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhh
Q 040770 351 RLWTLWIFQTLGGVFCVWL-G-RAE---SLP--IAVVA---MVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGG 419 (521)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~-~-~~~---~~~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~ 419 (521)
.++ .-+........+... . +.. ... ..+.. ..+.+.+....+...++..+.+ +|..-|+.+.+.|+..
T Consensus 336 a~~-~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLs 414 (510)
T KOG3574|consen 336 AVP-YRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLS 414 (510)
T ss_pred hhh-HHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHH
Confidence 111 111111111111111 1 111 111 11111 1222222222233334444544 7899999999999999
Q ss_pred hHHHHhhhh
Q 040770 420 NFGSGLTQL 428 (521)
Q Consensus 420 ~~g~~i~~~ 428 (521)
++|+-.-..
T Consensus 415 nLGg~wp~t 423 (510)
T KOG3574|consen 415 NLGGNWPGT 423 (510)
T ss_pred HhcCCcHHH
Confidence 988754443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-09 Score=105.40 Aligned_cols=174 Identities=20% Similarity=0.289 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcC--CcHHHHHHHHHHHHH
Q 040770 64 TFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG--PRYGTSFLLLLSAPA 141 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~ 141 (521)
.+..+.+...+..+........+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..+++++.+++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence 355556666777777777778899999999999999999999999999999999999999988 667777888888999
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhhhhhhhH-HHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCC
Q 040770 142 VFCMSFVSDAQGYIAARFMIGFCLATFVSC-QYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATP 220 (521)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~ 220 (521)
.+.+.++++++.++..-++.|++.|.+... ..++.|....++-..+.|+...+.+++..+|+.+++.+.+..
T Consensus 379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t------- 451 (509)
T KOG2504|consen 379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT------- 451 (509)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-------
Confidence 999999999999999999999999986544 468899999999999999999988888877776655444332
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 221 FTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
.+|...|+..++..++.+.+.++.
T Consensus 452 -g~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 452 -GNYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred -CCeeeehhhcChHHHHHHHHHHHh
Confidence 149999999999877776665554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=99.52 Aligned_cols=141 Identities=11% Similarity=0.015 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHH
Q 040770 281 TWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360 (521)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (521)
++.+++.++............+|.+ ++.+|.+..+.+++.+...++..++.+..|++.||+|+|+ .+..+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-------~~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-------GILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHH
Confidence 3444444443333333333455544 6778999999999999999999999999999999999986 6666666
Q ss_pred HHHHHHHHhhc---cCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 361 LGGVFCVWLGR---AESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 361 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+++.++... .++.+..++..++.|++.+...+....++.+ .+++.+++..++.+....+|..++|.+
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i 149 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVV 149 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555432 3467777888888999998888877777654 477889999999999999999999887
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=97.32 Aligned_cols=147 Identities=11% Similarity=-0.043 Sum_probs=108.5
Q ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh
Q 040770 88 IIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT 167 (521)
Q Consensus 88 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 167 (521)
.+++.+|.++.+.|++.+.+.++..++++..+++.||+++|+++..+. +.++..++.++.++++.+.+..++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 456678999999999999999999999999999999999998888775 4445555566677888788888899999885
Q ss_pred -hhhHHHHHHhhcCCcc-hhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 168 -FVSCQYWTTIMFNGKI-LGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 168 -~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
.++..+.+.+..|++. +|++.++.+...++|..++..+...+... |-+..+++.++..++...+.+.+
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL----------GVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777665554 79999999888888887777655544221 55555555444434444443333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.7e-07 Score=84.91 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=124.8
Q ss_pred HHHHHHhhhhcchhchHHHHhhcCCCc--cchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc
Q 040770 71 SFFTCFISTFAAAPLVPIIRDNLNLTK--TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV 148 (521)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 148 (521)
..+...++........+.+..+++.+. .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T COG0477 10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA 89 (338)
T ss_pred HHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 333444666666677888888887666 488999999999999999999999999999988888887766777777777
Q ss_pred cC--HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCC-cchhhHHHHhhh-hhhhhhHHHHhHHHHHHHHHHHhCCCCCCC
Q 040770 149 SD--AQGYIAARFMIGFCLAT-FVSCQYWTTIMFNG-KILGLVNGCAGG-WGDMGGGVTQLLMPLVFEVIKLAGATPFTA 223 (521)
Q Consensus 149 ~~--~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~ 223 (521)
.+ .+.+++.|+++|++.+. .+....++.|++|+ ++|+...+.... ...+|..+++.++..+... ...+
T Consensus 90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 162 (338)
T COG0477 90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-------LLWG 162 (338)
T ss_pred ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhcc
Confidence 76 99999999999999985 77888999999987 678888888877 4566666666555444443 1238
Q ss_pred chHHHHHHHHHHHHH
Q 040770 224 WRIAFFIPGWLHVIM 238 (521)
Q Consensus 224 wr~~f~~~~~~~~~~ 238 (521)
||+.|.+........
T Consensus 163 ~~~~~~~~~~~~~~~ 177 (338)
T COG0477 163 WRAAFLLAALLGLLL 177 (338)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999777776655443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-08 Score=93.88 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhh----cCCcHHHHH-HHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL----IGPRYGTSF-LLLLSA 139 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~~-~~~~~~ 139 (521)
+..+....+...+.+..-...++++..++|++....+.+--+..+...+.+++.|..+|| |||||.++. +.+...
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~ 113 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence 333444444444555454456777888999999999988888888888999999999996 897766554 566677
Q ss_pred HHHHHHhhccCHHH------------HHHHHHHHHhh-----hhh-hhhHHHHHHhhcCCcchhh-HHHHhhhhhhhhhH
Q 040770 140 PAVFCMSFVSDAQG------------YIAARFMIGFC-----LAT-FVSCQYWTTIMFNGKILGL-VNGCAGGWGDMGGG 200 (521)
Q Consensus 140 ~~~~~~~~~~~~~~------------l~~~r~l~G~~-----~~~-~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~ 200 (521)
++.++..++.++.. .-+.-++.|+. .-. ..++-+++.|...++++.+ +++++..+..+|..
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv 193 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV 193 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence 77888877755443 23344455544 222 4588899999997777666 99999999999998
Q ss_pred HHHhHHH
Q 040770 201 VTQLLMP 207 (521)
Q Consensus 201 ig~~~~~ 207 (521)
+|..+++
T Consensus 194 LGY~~g~ 200 (498)
T KOG0637|consen 194 LGYALGS 200 (498)
T ss_pred eeeeccc
Confidence 8887766
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-08 Score=97.79 Aligned_cols=132 Identities=15% Similarity=0.061 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 040770 290 FSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL 369 (521)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (521)
+...........+|.+. +.+|.++.+.++..+...++..++.++.|+++||+|||+ .+..+..+..++.++.
T Consensus 19 ~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-------~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 19 VGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP-------VILVGMSIFILGTLVA 90 (394)
T ss_pred HHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-------HHHHHHHHHHHHHHHH
Confidence 33333444444556555 456999999999999999999999999999999999986 5555555566665666
Q ss_pred hccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 370 GRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
...++.+.+++..++.|++.+...+....+..+ .+++.++.+.++.+....++..++|.+
T Consensus 91 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 91 LFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777788888776655555555554 466788899999888888888888887
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.8e-08 Score=88.30 Aligned_cols=326 Identities=12% Similarity=0.029 Sum_probs=217.2
Q ss_pred hhcCCCccchh-hHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhhhh
Q 040770 91 DNLNLTKTDVG-NAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFV 169 (521)
Q Consensus 91 ~~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 169 (521)
.+.|++..++. -+.-...-.+.+.-++.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.|...+...
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI 113 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI 113 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH
Confidence 34456655543 23444455566667777789999999999999888888888999999999999999999999998888
Q ss_pred hHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccC
Q 040770 170 SCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDL 249 (521)
Q Consensus 170 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 249 (521)
+-++++-+..+++++-++.+...+..-.|-..|..++.++...- ..++...=.+.-. ...++.+..+++|..
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~-------~~sy~~LN~ISL~-~~~ia~~~A~fLP~v 185 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE-------TLSYTTLNYISLA-EVTIAVLLALFLPRV 185 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc-------ccchhhhchhhHH-HHHHHHHHHhhCCCC
Confidence 99999999999999999999987776667666665555554431 1133333233222 223333344445544
Q ss_pred CCCChhhhhccC--------CCcc-----------ccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Q 040770 250 PDGNLGALQKKG--------NVNK-----------DKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRF 310 (521)
Q Consensus 250 p~~~~~~~~~~~--------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (521)
+++......+++ ...+ ...++++....+||+++...+-..+..++++-..++......+..
T Consensus 186 ~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~ 265 (433)
T KOG3810|consen 186 KRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA 265 (433)
T ss_pred chhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC
Confidence 433211000000 0001 112345566678898888888777777777777777666665542
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhh
Q 040770 311 -NLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGT 389 (521)
Q Consensus 311 -g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 389 (521)
+-....-|..=++..+.++++.+..|++--.+.|.. -.++..+....+.+++++..+.+.|..++..+++...+
T Consensus 266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g-----~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y 340 (433)
T KOG3810|consen 266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWG-----DLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIY 340 (433)
T ss_pred CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhh-----HHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhH
Confidence 111223344555666777788888888865555542 23556666667777778888889999999998888887
Q ss_pred hhccccccccc-ccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 390 QAACGATFGIV-PFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 390 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
....++...-+ ..+..+.-|...|+..++.-+-..+-..+
T Consensus 341 ~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i 381 (433)
T KOG3810|consen 341 QLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI 381 (433)
T ss_pred hhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE
Confidence 77776665544 46788888999999888777666666654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=99.85 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=102.7
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHH
Q 040770 298 TNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPI 377 (521)
Q Consensus 298 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (521)
+...+|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++.++....++.+.
T Consensus 10 ~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 10 YLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-------VILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-------HHHHHHHHHHHHHHHHHHHccHHH
Confidence 33566766655 6999999999999999999999999999999999885 666666666666666667778888
Q ss_pred HHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 378 AVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 378 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.++..++.|++.+...+...+++.+. ++++|+++.++.+....+|..++|.+.
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 135 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG 135 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777777776654 788899999999999999999998873
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-08 Score=95.07 Aligned_cols=123 Identities=13% Similarity=0.000 Sum_probs=106.5
Q ss_pred hhHHHHHHHhcCCCHHH-HHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHH
Q 040770 300 NIISEFMYDRFNLKLHT-AGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIA 378 (521)
Q Consensus 300 ~~~~~~l~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (521)
.+...++.+.+|++..+ .|.+...+..+..+..+++|++.||+|.|+ ++.++.+..++..++..+..+...+
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-------vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-------VLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555676788999999 999999999999999999999999999986 7777777777777777788788888
Q ss_pred HHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 379 VVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
.+.-+++|++.+... ....++. .+|+++|++++|+.+....+|.++++.+.
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ 170 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLG 170 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888 6666654 67999999999999999999999998873
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.5e-08 Score=93.71 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCC---cHHHH-HHHHHHHHH
Q 040770 66 HLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGP---RYGTS-FLLLLSAPA 141 (521)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---r~~~~-~~~~~~~~~ 141 (521)
+.+++.+++.....+.....+|.+.++.|.+.. .+...++..+...++ .++++||..| |+... ...++.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 334444555555555555667888888887754 555555555544444 4677777654 33333 244444555
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCC
Q 040770 142 VFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATP 220 (521)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~ 220 (521)
..+.+++.+.+..++.-.+.|++... .+...++.+|.+|++.|++++|+.+....+|..+++.+.+.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--------- 341 (368)
T TIGR00903 271 FLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--------- 341 (368)
T ss_pred HHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---------
Confidence 55555555555555555666666554 45677899999999999999999999999999888766654441
Q ss_pred CCCchHHHHHHHHHHHHHHHHHH
Q 040770 221 FTAWRIAFFIPGWLHVIMGILVL 243 (521)
Q Consensus 221 ~~~wr~~f~~~~~~~~~~~~~~~ 243 (521)
+-+..|.+.+++.++.++..+
T Consensus 342 --~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 342 --SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred --CHHHHHHHHHHHHHHHHHHHH
Confidence 566778888777777666554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-08 Score=98.96 Aligned_cols=128 Identities=14% Similarity=0.017 Sum_probs=97.1
Q ss_pred chHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHH
Q 040770 85 LVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVS--DAQGYIAARFMI 161 (521)
Q Consensus 85 ~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~ 161 (521)
..|.+ ++.+|.++...++......++..++.++++++.||+|+|+.+.++.++.+++.++..+.+ +++.+++..++.
T Consensus 250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 329 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIA 329 (448)
T ss_pred hheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 34433 344676655445545555677888999999999999999999999999888887777654 677777788889
Q ss_pred Hhhhhh-hhhHHHHHHhhcCCc-------chhhHHHHhhhhhhhhhHHHHhHHHHHHHH
Q 040770 162 GFCLAT-FVSCQYWTTIMFNGK-------ILGLVNGCAGGWGDMGGGVTQLLMPLVFEV 212 (521)
Q Consensus 162 G~~~~~-~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 212 (521)
|+|.+. .+...++++|..+.+ ++|...++.+....+|..+|+.+.+.+...
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999885 667777888877543 458889999888889998888777666554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.7e-08 Score=95.55 Aligned_cols=118 Identities=13% Similarity=-0.028 Sum_probs=95.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 040770 306 MYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLF 385 (521)
Q Consensus 306 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (521)
+.+.+|.+....++..+++.++..++.++.|+++||+|||+ .+..+..+.+++.++....++.+.+++.-++.
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~ 114 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP-------VLITGALIFTLACAATLFTTSMTQFLIARFIQ 114 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999986 66666666667777777778888888888888
Q ss_pred Hhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 386 SMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 386 g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
|++.+...+..+.+..+. ++++++++.++.+....++..++|.+.
T Consensus 115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765445555555544 778889999999999999999998873
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.2e-08 Score=96.98 Aligned_cols=128 Identities=16% Similarity=0.006 Sum_probs=92.4
Q ss_pred HHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc
Q 040770 293 GIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA 372 (521)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (521)
+..+.+..+.+ .+.+.+|++..+.+.+..+.. ......++.|++.||+|+|+ ++.++.++..++.++.++.
T Consensus 41 g~~y~fsv~s~-~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~-------vllig~ll~~iG~ll~ala 111 (591)
T PTZ00207 41 SFMYAFNLISG-AMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRP-------IFVLSMTVFCLGTLLFALT 111 (591)
T ss_pred HHHHHHHHHHH-HHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33445544444 456778999999998876633 33356667899999999986 6777777777777666654
Q ss_pred ------CcHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 373 ------ESLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 373 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+.+.++++.++.|++.+...+.....+.+..+++||.+.|+......+|+.+.+.+
T Consensus 112 ~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l 174 (591)
T PTZ00207 112 FQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSI 174 (591)
T ss_pred hcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888888876666555555444446889999999999999999875554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=102.20 Aligned_cols=173 Identities=13% Similarity=0.158 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHH-HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHH--------HHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPII-RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGT--------SFLL 135 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~--------~~~~ 135 (521)
++..++..+........+...+|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 342 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3444455555555555555556665 566899999999999999999999999999999998754221 1111
Q ss_pred HH--HHHHHHHHhh-ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 136 LL--SAPAVFCMSF-VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 136 ~~--~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
.. .++..++... ..+.+..+++-.+.+.+.+. .........|.. ++.+|.++++.+....+|..+++ .+.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~l~~~i~p----~l~g 417 (465)
T TIGR00894 343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLA-PRFLGFIKGITGLPGFIGGLIAS----TLAG 417 (465)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcC-hhHHHHHHHHHHHHHHHHHHHHH----Hhhh
Confidence 11 1111111222 23444444444555554443 333334445555 45889999988777666665554 4444
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040770 212 VIKLAGATPFTAWRIAFFIPGWLHVIMGILVLT 244 (521)
Q Consensus 212 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 244 (521)
.+.+. .+..+|+..|++.++..++..++..+
T Consensus 418 ~~~~~--~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 418 NILSQ--DSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred eeeCC--CCchHHHHHHHHHHHHHHHHHHHeee
Confidence 33211 01125999999988877666555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.3e-08 Score=95.59 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhh-cCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDN-LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVF 143 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 143 (521)
+..+....++..+.........+.+.++ +|. +...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.+
T Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~-~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGN-EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcC-chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 3344555555556555555555665555 454 46788888899999999999999999999999999999999999999
Q ss_pred HHhhcc--CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCC-------cchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 144 CMSFVS--DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNG-------KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 144 ~~~~~~--~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+..+.+ |.+.+++.-++.|++.+. .....++++|..+. ++.|..+++......+|..++..+.+.+....
T Consensus 306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 988886 999999999999999996 56677888877752 44588889988888889888887766665543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=92.13 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=106.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 040770 308 DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSM 387 (521)
Q Consensus 308 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (521)
+..+.+...+|++.+.+.+...+.++..|.++||+|||. ++.+|.+..++..++.....+...++..=++.|+
T Consensus 61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp-------vll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi 133 (451)
T KOG2615|consen 61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP-------VLLACLIGVALSYLLWALSRNFAAFVLARFLGGI 133 (451)
T ss_pred CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333557788999999999999999999999999999996 7778888788888888777777444444566666
Q ss_pred hhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhHh--c-----ccchhHHHH---HHH--HHHHHHHHhh
Q 040770 388 GTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAFF--S-----NSKFSTATG---ISL--MGALTWGSML 454 (521)
Q Consensus 388 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~~--~-----~~~~~~~~~---~~~--~~~~~~~~~~ 454 (521)
+- +..++..+++.|+ ++++|+.+++.+++...+|.++||.++. . ...|.+... ..+ ++-+.++.++
T Consensus 134 ~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~ 212 (451)
T KOG2615|consen 134 FK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWF 212 (451)
T ss_pred cc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 65 4445566777766 7899999999999999999999999831 1 123333331 111 2223566677
Q ss_pred cCCCCCCC
Q 040770 455 LPPSKDPQ 462 (521)
Q Consensus 455 ~~~~~~~~ 462 (521)
++|+-+.+
T Consensus 213 lpETL~~r 220 (451)
T KOG2615|consen 213 LPETLPLR 220 (451)
T ss_pred CCccccch
Confidence 88876554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=72.31 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=75.7
Q ss_pred HHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHH
Q 040770 75 CFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGY 154 (521)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (521)
.++.++.+.|++|.+++|.++|.++.|++.+..++||.+|++...++.++..+++.+..+++...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 45678899999999999999999999999999999999999999999999899999999999999999999999988765
Q ss_pred H
Q 040770 155 I 155 (521)
Q Consensus 155 ~ 155 (521)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 4
|
Note that many members are hypothetical proteins. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-07 Score=92.16 Aligned_cols=136 Identities=11% Similarity=0.049 Sum_probs=101.4
Q ss_pred HhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-h
Q 040770 90 RDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-F 168 (521)
Q Consensus 90 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~ 168 (521)
++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.++.+ .++.-++.|++.+. +
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999888877777766666643 34556788999995 8
Q ss_pred hhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHH
Q 040770 169 VSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA-WRIAFFIPGWLHVI 237 (521)
Q Consensus 169 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~-wr~~f~~~~~~~~~ 237 (521)
|...+...+..++ +.+.+.++... ..+|..+++.+.+.+.+.. | -|..|++..+..+.
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~---------g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAA---------GNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhc---------cchHHHHHHHHHHHHH
Confidence 8888888888754 45667776653 3355555554444444422 5 67778766554333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.2e-08 Score=96.27 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=118.5
Q ss_pred hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc----------cCHHHHHHHHHH
Q 040770 91 DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV----------SDAQGYIAARFM 160 (521)
Q Consensus 91 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 160 (521)
+.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 5789999999999999999999999999999999999999999999999888664321 344455566788
Q ss_pred HHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH
Q 040770 161 IGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMG 239 (521)
Q Consensus 161 ~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 239 (521)
.+++.+. +.+...++.+..|++++|...++..+..++|..+++.+++.+...+... .+..+.++.+.+...+.-+..
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~--~~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGIT--CDNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cccccchHHHHHHHHHHHHHH
Confidence 8998885 7788999999999999999999999999999999998888887766311 112233444433333333333
Q ss_pred HHHHHhccc
Q 040770 240 ILVLTLGQD 248 (521)
Q Consensus 240 ~~~~~~~~~ 248 (521)
+...+++|+
T Consensus 439 l~~~~llP~ 447 (468)
T TIGR00788 439 LPLLHLLPR 447 (468)
T ss_pred HHHHHhCCC
Confidence 333445554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.6e-05 Score=73.59 Aligned_cols=285 Identities=12% Similarity=0.034 Sum_probs=157.5
Q ss_pred cCchhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcC---CCccchhhHHHHHHH-HHHHHhhhhHhhhhhcCCcHHHH
Q 040770 57 FAKPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLN---LTKTDVGNAGVASVS-GSIFSRLIMGAVCDLIGPRYGTS 132 (521)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~ 132 (521)
..+..++.+..+.+.+|+..+.... +-.+++.+= ..++.+..+=....+ ...+...+..++++++++.+++-
T Consensus 18 i~~~E~~k~~~l~~m~f~i~f~y~~----lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy 93 (491)
T PF03219_consen 18 IHRSELKKFLPLALMFFFILFNYTI----LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFY 93 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3355555566666666666655433 233333221 134555555554444 33455677899999999999988
Q ss_pred HHHHHHHHHHHHHhhc---------cC----------------------HHHHHHHHHHHHhhhhh-hh-hHHHHHHhhc
Q 040770 133 FLLLLSAPAVFCMSFV---------SD----------------------AQGYIAARFMIGFCLAT-FV-SCQYWTTIMF 179 (521)
Q Consensus 133 ~~~~~~~~~~~~~~~~---------~~----------------------~~~l~~~r~l~G~~~~~-~~-~~~~~i~~~~ 179 (521)
+....+.....+.++. ++ .|.+.+..++.-+-... .. .-..+..|.+
T Consensus 94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it 173 (491)
T PF03219_consen 94 IIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT 173 (491)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777776666665552 11 12222222333333232 22 3457888999
Q ss_pred CCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH----HHHHhcccC---CCC
Q 040770 180 NGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGI----LVLTLGQDL---PDG 252 (521)
Q Consensus 180 ~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~----~~~~~~~~~---p~~ 252 (521)
+.+|-.+..++...+.++|..+++.+...+..........+...|...+.......++.++ +..++-+.. |+.
T Consensus 174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~ 253 (491)
T PF03219_consen 174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRF 253 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999998888888877776655555512111111233676544322222222222 222222111 111
Q ss_pred ChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH---HHHHHHHHHHHHHH
Q 040770 253 NLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLH---TAGTIAATFGMANI 329 (521)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~---~~~~~~~~~~~~~~ 329 (521)
.+...++++.+++.+..+.++.++++|.+..+++...+.......+....-..+.+.+--+.. -.|-.....++..+
T Consensus 254 ~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivti 333 (491)
T PF03219_consen 254 YPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTI 333 (491)
T ss_pred chhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH
Confidence 111222333444556678888999999888887777666555555544444555554433322 23344455566666
Q ss_pred hhhhhhHHHhhhhhcc
Q 040770 330 FARPFGGYASDVAGRL 345 (521)
Q Consensus 330 ~~~~~~g~l~d~~~~~ 345 (521)
+..++++.+.+|+|-+
T Consensus 334 i~~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 334 IMMFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 6667777887777755
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-07 Score=90.18 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh----hhcccccchhHHHHH
Q 040770 281 TWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDV----AGRLFGMRGRLWTLW 356 (521)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~~ 356 (521)
...++...+.....+.....+++.|+++ +|.+....+++..+..+..++..++.|+++|| +|||+ ..+.
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr------p~il 78 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR------PFIA 78 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH------HHHH
Confidence 3334444444444555555677777754 69999999999999999999999999999995 88775 2233
Q ss_pred HHHHHHHHHHHHhhccCcH-----------------HHHHHHHHHHHhhhhhcccccccccccc-cccch--hhhhhhhh
Q 040770 357 IFQTLGGVFCVWLGRAESL-----------------PIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSL--GILSGLTG 416 (521)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~--~~~~g~~~ 416 (521)
.+.....+.++++.+..+. +...+.+.+..++.....+...+++.|. |+++| +.+.++.+
T Consensus 79 ~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~ 158 (477)
T TIGR01301 79 AGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFS 158 (477)
T ss_pred HHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHH
Confidence 3344444444454443321 2223334445556666667777787766 55543 67899999
Q ss_pred hhhhHHHHhhhhh
Q 040770 417 AGGNFGSGLTQLA 429 (521)
Q Consensus 417 ~~~~~g~~i~~~l 429 (521)
.+..+|+.+++.+
T Consensus 159 ~~~~lG~ilg~~~ 171 (477)
T TIGR01301 159 FFMAIGNVLGYAA 171 (477)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888876
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-07 Score=82.53 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=125.0
Q ss_pred HHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc-CCcHHHHHHHHHHHHHHHHHhh
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-GPRYGTSFLLLLSAPAVFCMSF 147 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~ 147 (521)
.+.+-+..+..+....-+|.+..|-|+|..+.|++.+...+.....++....+++|. .+|+..+...+++.++.+.+.+
T Consensus 214 tLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~ 293 (395)
T COG2807 214 TLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL 293 (395)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 333344445556666789999999999999999999999999999999999999975 6888888899999999988888
Q ss_pred ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCC-cchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCch
Q 040770 148 VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNG-KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWR 225 (521)
Q Consensus 148 ~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr 225 (521)
.+....++- -++.|+|.|+ ++.+..++.+..+. ++-++..++.|....+=..+||.+.+.+-+.. .+|+
T Consensus 294 ~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~--------gsw~ 364 (395)
T COG2807 294 APGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT--------GSWS 364 (395)
T ss_pred hhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc--------CChH
Confidence 765443333 4899999885 89898888887744 44556666666554444444444444433332 2899
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 040770 226 IAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 226 ~~f~~~~~~~~~~~~~~~~~ 245 (521)
..++..+...+++.+..+..
T Consensus 365 ~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 365 APLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99998888877777666655
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-08 Score=90.12 Aligned_cols=127 Identities=17% Similarity=0.281 Sum_probs=93.8
Q ss_pred HHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhh-hhhhHHHHHHhhcCCcchhh
Q 040770 108 VSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLA-TFVSCQYWTTIMFNGKILGL 186 (521)
Q Consensus 108 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~-~~~~~~~~i~~~~~~~~r~~ 186 (521)
.+.-.-|.++.+++.||+|||+++..+.+++++..++...+.+-..+.+.-+..-++.. ++.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34445688899999999999999999999999999988776554433333333333333 46778889999999999999
Q ss_pred HHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 187 VNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 187 ~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
..|.-.....+|.++.|+++ +..+. +-..+..+.+.+.++.++...++
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~----------s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAEL----------STSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhcc----------ceeehHHHHHHHHHHHHHHheee
Confidence 99999999999997777665 22221 33455566777767777776666
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=81.87 Aligned_cols=141 Identities=12% Similarity=0.143 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH-HHHHH
Q 040770 67 LAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP-AVFCM 145 (521)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~-~~~~~ 145 (521)
++++++.+..+-....++ ..+++.||+|+...+-+.+....-.++.+++.|.++||+|++...+.+..+..+ +-.+.
T Consensus 271 iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l 348 (459)
T KOG4686|consen 271 IICVLYYVAWFPFITLGP--MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL 348 (459)
T ss_pred HHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH
Confidence 334444444444333332 347899999999999998888888889999999999999999887776555443 33333
Q ss_pred hhccCHHHHHHHHHHHHhhhhhh-hhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 146 SFVSDAQGYIAARFMIGFCLATF-VSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 146 ~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
.| +++.=.++..+.|+..... ......++-..|+++.|.+.|..+...++|.++.+++++++.+
T Consensus 349 ~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 349 FF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred Hh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 33 2333345667788877753 3455677888999999999999999999999888876666554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-07 Score=90.60 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=87.2
Q ss_pred cchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh--ccCHHHHHHHHHHHHhhhhh-hhhHHHH
Q 040770 98 TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF--VSDAQGYIAARFMIGFCLAT-FVSCQYW 174 (521)
Q Consensus 98 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~~ 174 (521)
...+.+.....+...++.++++++.||+|+|+.+.++.++.+++.+...+ .++.+.+++..++.|++.+. .+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677888888999999999999999999888766654433222 35777788888999999986 6677788
Q ss_pred HHhhcC-------CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 175 TTIMFN-------GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 175 i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
++|..+ .++.|...++......+|..+|+.+++.+.+..
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888775 223466778888888899999888777776654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-07 Score=92.38 Aligned_cols=129 Identities=6% Similarity=-0.043 Sum_probs=95.3
Q ss_pred chHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhh-----ccCHHHHHHHHH
Q 040770 85 LVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSF-----VSDAQGYIAARF 159 (521)
Q Consensus 85 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~ 159 (521)
..+.+.+....+....+++.+...++..++.++++++.||+|+|+.+.++.++..++.+...+ .++.+.+++.-+
T Consensus 253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 332 (473)
T PRK10429 253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGI 332 (473)
T ss_pred heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 334444443334566777777777888999999999999999999999888877666555432 356677777888
Q ss_pred HHHhhhhh-hhhHHHHHHhhcC-------CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 160 MIGFCLAT-FVSCQYWTTIMFN-------GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 160 l~G~~~~~-~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+.|++.+. .....++++|..+ .++.|..++.......+|..+++.+.+.+.+..
T Consensus 333 l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 333 LLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88998885 5677788888865 334566888888888899988887777666543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=98.72 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=97.1
Q ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC---
Q 040770 297 TTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE--- 373 (521)
Q Consensus 297 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 373 (521)
++....-.-++++++++..+.|++.+.+.++..++.++.+++.||.+||+ .+.++.++.+++.++..+.+
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-------~i~~g~ll~~lg~ll~alphf~~ 122 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-------VIGIGCAIMGLGSFLLSLPHFLS 122 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce-------EEEecHHHHHHHHHHHhChHHhc
Confidence 33333334456778999999999999999999999999999999999986 44455555555555443321
Q ss_pred ------------------------------------------------cHHHHHHHHHHHHhhhhhcccccccccccc-c
Q 040770 374 ------------------------------------------------SLPIAVVAMVLFSMGTQAACGATFGIVPFV-S 404 (521)
Q Consensus 374 ------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 404 (521)
.+..+++.-++.|++.+..++...+++.+. |
T Consensus 123 ~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~ 202 (633)
T TIGR00805 123 GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK 202 (633)
T ss_pred CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC
Confidence 123456677888999888888888888754 8
Q ss_pred ccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 405 RRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 405 ~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.|+...|+.+....+|..+++.+
T Consensus 203 ~~~~~~~~~i~~~~~~iG~~lG~ll 227 (633)
T TIGR00805 203 SKNSPLYIGILESIAVFGPAFGYLL 227 (633)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999988888876
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=89.87 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=130.6
Q ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh
Q 040770 88 IIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT 167 (521)
Q Consensus 88 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 167 (521)
--.+|++..+...|........|-++.-++.+++..|+|+-+++..++.+..+=.+..+..+|.|+.+...+++|+..+.
T Consensus 396 WHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 396 WHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHAL 475 (618)
T ss_pred HHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHH
Confidence 34578887888889888888889999999999999999999999999999999999999999999999999999999996
Q ss_pred -hhhHHHHHHhhcCCcchhhHHHHhhh-hhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 168 -FVSCQYWTTIMFNGKILGLVNGCAGG-WGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 168 -~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
+..+.+|++...||+-|..+.++.+. ..++|-.+|.++++.+...+ +=|..|.+.++.+++.+++...+
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f---------g~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF---------GARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998765 45788888888888776655 77999999998888776665554
Q ss_pred c
Q 040770 246 G 246 (521)
Q Consensus 246 ~ 246 (521)
.
T Consensus 547 q 547 (618)
T KOG3762|consen 547 Q 547 (618)
T ss_pred h
Confidence 3
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=89.18 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHH
Q 040770 281 TWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360 (521)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (521)
...+++...+.+.-.+.+...++- .++.++.++...|++.....+...++.+++|++.||+.|+. ++.++..
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-------v~~vG~~ 106 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR-------VIAVGIF 106 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce-------EEeeHHH
Confidence 344444444444444444433222 34568999999999999999999999999999999999986 6777777
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 361 LGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+-.+..+...+....|.+.++-.+.|+|.....++..+++++. +.+.|++++++.++...+|..+|-..
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv 176 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV 176 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence 7777777777777889999999999999999999999998865 88999999999999999888777665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.2e-06 Score=77.41 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=128.4
Q ss_pred HHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhh-hcCCcHHHHHHHHHHHHHHHHHh---hccCHHHHHHHHHHHH
Q 040770 87 PIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCD-LIGPRYGTSFLLLLSAPAVFCMS---FVSDAQGYIAARFMIG 162 (521)
Q Consensus 87 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G 162 (521)
|+=.+-||++..|...+......|..++....|++.. |.++++...+++.+..++..+.. ...+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3344668999999999999999999999999999887 67888888888888777776644 4568889999999999
Q ss_pred hhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCC-CCCCCchHHHHHHHHHHHHHHH
Q 040770 163 FCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGA-TPFTAWRIAFFIPGWLHVIMGI 240 (521)
Q Consensus 163 ~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~-~~~~~wr~~f~~~~~~~~~~~~ 240 (521)
++.|. .....+...+...+++-|..+|.+.....+...+|.++++.+.+......- +...+|-.+|.+.++..++...
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 99997 457778999999999999999999999999999999999888887765433 2455788999988877555544
Q ss_pred HHH
Q 040770 241 LVL 243 (521)
Q Consensus 241 ~~~ 243 (521)
+..
T Consensus 393 ll~ 395 (403)
T PF03209_consen 393 LLG 395 (403)
T ss_pred HHH
Confidence 443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=78.19 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=79.3
Q ss_pred HHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc
Q 040770 323 TFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF 402 (521)
Q Consensus 323 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (521)
...++..++.++.+++.||++||+ ....+..+..++.+.....++.+...+..++.+++.+...+....+..+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKP-------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456778888999999999999885 4555555555555555556777777778888888888877777777664
Q ss_pred -ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 403 -VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 403 -~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.|++.|+++.++.+....+|..++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPL 106 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHh
Confidence 488899999999999999999999987
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-06 Score=83.54 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhhhhhhHHHhhhh-hcccccchhHHH
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFMYDRFN----LKLHTAGTIAATFGMANIFARPFGGYASDVA-GRLFGMRGRLWT 354 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~ 354 (521)
.++.+...=+.--+.+|++-..+..|+....+ ++.+++.-++..+...--+..+++||++||+ |+|+ .
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~-------t 94 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR-------T 94 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-------H
Confidence 45555556666677888888888888887777 9998888877777777777888999999995 7665 7
Q ss_pred HHHHHHHHHHHHHHhhccC--cHHHHHHHHHHHHhhhhhcccccccccccc----cccchhhhhhhhhhhhhHHHHhhhh
Q 040770 355 LWIFQTLGGVFCVWLGRAE--SLPIAVVAMVLFSMGTQAACGATFGIVPFV----SRRSLGILSGLTGAGGNFGSGLTQL 428 (521)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~g~~i~~~ 428 (521)
+..+.++..++-+++.... +...+++.+.++++|.+..=+...+++.+. +++ |-.+.++.....++|++++|.
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHHHH
Confidence 8888888888888887773 677888888888899998888888877654 233 677889999999999999999
Q ss_pred h-HhcccchhHHHHHHH
Q 040770 429 A-FFSNSKFSTATGISL 444 (521)
Q Consensus 429 l-~~~~~~~~~~~~~~~ 444 (521)
+ ....+.|++..++.+
T Consensus 174 i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 174 ITGLLAINYGWHVGFGL 190 (498)
T ss_pred HHHHHHHhhCHHHHHHH
Confidence 8 334444444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0015 Score=63.42 Aligned_cols=282 Identities=11% Similarity=-0.006 Sum_probs=158.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCC---CccchhhHHHHHHH-HHHHHhhhhHhhhhhcCCcHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNL---TKTDVGNAGVASVS-GSIFSRLIMGAVCDLIGPRYGTSFL 134 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~ 134 (521)
+..+..+..+.+.+++..+... ++-.+.+.+.+ .++.+.++-+..-+ +..+..++.+++.+++-+.+++-+.
T Consensus 23 r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~ 98 (509)
T COG3202 23 RYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 3444555545555555554443 34455555544 35567777777777 6667888899999999999999888
Q ss_pred HHHHHHHHHHHhhc---------cC-----------------------HHHHHHHHHHHHhhhhh-hh-hHHHHHHhhcC
Q 040770 135 LLLSAPAVFCMSFV---------SD-----------------------AQGYIAARFMIGFCLAT-FV-SCQYWTTIMFN 180 (521)
Q Consensus 135 ~~~~~~~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~~~-~~-~~~~~i~~~~~ 180 (521)
+..+....+++++. ++ .|...+..++.-+-... .. .-.....|.+.
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt 178 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT 178 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888777777762 11 13333333333333332 22 34567789998
Q ss_pred CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChh----
Q 040770 181 GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAG-ATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLG---- 255 (521)
Q Consensus 181 ~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~---- 255 (521)
.+|-.|..++++.+.+++..++..+...+........ ......-+..+.+.++.++++..+..++-+..++.+.-
T Consensus 179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~ 258 (509)
T COG3202 179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRA 258 (509)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHH
Confidence 8999999999988888877655544433332110000 00000134455555555555555555554444444331
Q ss_pred hhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH---HHHHHHHHHHH-HHhh
Q 040770 256 ALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHT---AGTIAATFGMA-NIFA 331 (521)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~---~~~~~~~~~~~-~~~~ 331 (521)
..++++++.+-+..+.++.+.++|..+.+++...+.......+....-.-..+.+-...+. .|.+....++. .++.
T Consensus 259 ~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~ 338 (509)
T COG3202 259 KKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVF 338 (509)
T ss_pred hcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223344556778888889888887777766655554444333333333333333222 23333344444 4445
Q ss_pred hhhhHHHhhhhhc
Q 040770 332 RPFGGYASDVAGR 344 (521)
Q Consensus 332 ~~~~g~l~d~~~~ 344 (521)
..+++.+.+|.|-
T Consensus 339 ~~~~s~~ir~~GW 351 (509)
T COG3202 339 LFPGSNLIRRVGW 351 (509)
T ss_pred HhhhHHHHHHhhH
Confidence 5567777777764
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-07 Score=85.31 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=121.7
Q ss_pred chhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcC--CcHHHHHHHHHHHHHHHHHhhccCHHHHHHHH
Q 040770 82 AAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIG--PRYGTSFLLLLSAPAVFCMSFVSDAQGYIAAR 158 (521)
Q Consensus 82 ~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 158 (521)
.-|.++. +.+.+..+..++|+..--..+.+.++..+.|.++||++ |-.....+++..+..+....+++++.++++-+
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~ 368 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPN 368 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhh
Confidence 3455555 66777866669999988899999999999999999999 65555567777777777788999999999999
Q ss_pred HHHHhhhhh----hhhHHHHHHhhcCCc---chhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHH
Q 040770 159 FMIGFCLAT----FVSCQYWTTIMFNGK---ILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIP 231 (521)
Q Consensus 159 ~l~G~~~~~----~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~ 231 (521)
+..|++.+. ..+...++.|.-..+ -.|.+.++...+.++|..+||.+++.+...+ |++|...+.
T Consensus 369 ~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i---------GF~wl~~ii 439 (464)
T KOG3764|consen 369 FGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI---------GFEWLMTII 439 (464)
T ss_pred HHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh---------hHHHHHHHH
Confidence 888888773 224455555555444 6788899999999999988888887777665 899999999
Q ss_pred HHHHHHHHHHHHHh
Q 040770 232 GWLHVIMGILVLTL 245 (521)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (521)
++..++.+.+..++
T Consensus 440 g~~n~iyapvl~ll 453 (464)
T KOG3764|consen 440 GILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988877766655
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=75.77 Aligned_cols=136 Identities=18% Similarity=0.104 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHH
Q 040770 287 LYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFC 366 (521)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (521)
..|+.++.....+..+.+.+++.++.+..+++++...+..+..+..+..+++.+|+|.|+ -+..+..+.++++
T Consensus 20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~-------gi~lgL~l~avg~ 92 (422)
T COG0738 20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA-------GIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH-------HHHHHHHHHHHHH
Confidence 333444445555566777888899999999999999999999999999999999999986 6777778888877
Q ss_pred HHhhc---cCcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 367 VWLGR---AESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 367 ~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.++.. ..++..++..+++.+.|.+........++..+ +++....-+.+.+.+..+|.+++|++
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~ 159 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLL 159 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHH
Confidence 77753 34677788888899999988888888888765 56677777889999999999999987
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-07 Score=88.96 Aligned_cols=179 Identities=12% Similarity=0.112 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhh--------HHHH-HHHHHHHHhhhhHhhhhhcCCcHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGN--------AGVA-SVSGSIFSRLIMGAVCDLIGPRYGTSF 133 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~s~-~~~~~~~~~~~~g~l~dr~Grr~~~~~ 133 (521)
+.+...+..+|+.-+..+........+.+++++.+.+... ...+ ...++..+.++...+.|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4455566667777667777777788888888876665444 1111 222333466677889999999999999
Q ss_pred HHHHHHHHHHHHhhccC----HHHHHHHHHHHHhhhhh--hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHH
Q 040770 134 LLLLSAPAVFCMSFVSD----AQGYIAARFMIGFCLAT--FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMP 207 (521)
Q Consensus 134 ~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~~--~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 207 (521)
+.+++.+..+..+...| -..+++...+..+.... ......+-+|.+|.+-|+...|+..+..-+|.++|....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F- 462 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF- 462 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh-
Confidence 99999999999888765 22344444444444432 224456678999999999999999888888887766433
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 208 LVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 208 ~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
..+.+.......+.|++|++.+.+.++..+..+++
T Consensus 463 ---~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 463 ---LYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred ---hHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 33333222334488999999998877655555544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-06 Score=67.79 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCC
Q 040770 103 AGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNG 181 (521)
Q Consensus 103 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~ 181 (521)
-.++......+++++.+.+.+++|.|+.++++.+.+.+-.+.. +-++.+.++.+-++.|++.+. +.+...++.+..++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 4666777788888999999999999999999999998655543 567888999999999999996 78888899999999
Q ss_pred cchhhHHHHhhhhhhhhhHHHHhH
Q 040770 182 KILGLVNGCAGGWGDMGGGVTQLL 205 (521)
Q Consensus 182 ~~r~~~~~~~~~~~~~G~~ig~~~ 205 (521)
++|++..++.......+..+|.++
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877777666543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=9e-06 Score=82.27 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=98.9
Q ss_pred hchhHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchh
Q 040770 276 IKNYRTWVFFVLYGFSMGIEL----TTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGR 351 (521)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 351 (521)
.++++++..+....+.....+ .....++... ...|-+ ....++.....++..+..++.|+++|.+|||.
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~-~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~----- 109 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYIN-ADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY----- 109 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----
Confidence 456676666554444333222 2223344333 444655 44556777788899999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 352 LWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..+.+.++..++.++....++....+....+.|++.+..... ...++| +|.+.|..+.++.....-....++|.+
T Consensus 110 --~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i 185 (599)
T PF06609_consen 110 --FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLI 185 (599)
T ss_pred --HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH
Confidence 888888888899999999999999999999999986555433 333454 488899887776665444444455555
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-06 Score=82.64 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHH-hhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCC---------cHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIR-DNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGP---------RYGTSFL 134 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---------r~~~~~~ 134 (521)
++.++++.+........+....|.+. +-+|.+..+.|++.++..+...+..+++|.++||.-+ |..-.++
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 56677777777777777777777755 4589999999999999999999999999999998754 3333345
Q ss_pred HHHHHHHHHHHhhccCHHH-HHHHHHHHHhhhhhhh-hH-HHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 135 LLLSAPAVFCMSFVSDAQG-YIAARFMIGFCLATFV-SC-QYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~-~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
....++..+..++.++-.. ..+.-+..+.+..+.. .+ ..-..+. .+++-+..+|+.+....+...++| .+.+
T Consensus 340 ~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P----~~vg 414 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAP----LLVG 414 (466)
T ss_pred HHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHH----Hhee
Confidence 5555666666666653111 1112222222322222 22 1222222 577889999999877777775555 4444
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 212 VIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 212 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
.+...+ ....||++|++.+++.++..++..++
T Consensus 415 ~~~~~~--t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 415 IIVTDN--TREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eEeCCC--CHHHHHHHHHHHHHHHHHhchheeEe
Confidence 443211 33489999999999877776555444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=80.74 Aligned_cols=116 Identities=11% Similarity=-0.025 Sum_probs=76.5
Q ss_pred ccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHHhhhhh-hhhHHH
Q 040770 97 KTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVS--DAQGYIAARFMIGFCLAT-FVSCQY 173 (521)
Q Consensus 97 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~-~~~~~~ 173 (521)
+...+.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+ +.+.+++.-++.|++.+. .+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888899999999999999999988766555444344333332 233444555667777664 334455
Q ss_pred HHHhhcC-------CcchhhHHHHhhhhhhhhhHHHHhHHHHHHHH
Q 040770 174 WTTIMFN-------GKILGLVNGCAGGWGDMGGGVTQLLMPLVFEV 212 (521)
Q Consensus 174 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 212 (521)
+++|..+ .++-|..++.......+|..+|+.+++.+...
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554 23335556776677888998888777766654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.7e-09 Score=106.59 Aligned_cols=157 Identities=19% Similarity=0.108 Sum_probs=100.1
Q ss_pred hcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHh--h---ccC----
Q 040770 80 FAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMS--F---VSD---- 150 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~---~~~---- 150 (521)
.......+.+.++.+.+.. -+......+...++.++...+.||+|||+.++.+.++.+++.+..+ . .++
T Consensus 270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344455777777777666 2222333344556666777999999999999999999888877765 1 121
Q ss_pred -HHHHHHHHHHHHhhh--hhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHH
Q 040770 151 -AQGYIAARFMIGFCL--ATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIA 227 (521)
Q Consensus 151 -~~~l~~~r~l~G~~~--~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~ 227 (521)
+..+ +.-.+...+. +..+....+..|.+|.+.|.+..++......++..+++.+.+.+.... +-...
T Consensus 348 ~~~~i-~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~---------~~~~~ 417 (451)
T PF00083_consen 348 SILSI-VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL---------GGWGV 417 (451)
T ss_pred ccccc-eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------ccccc
Confidence 1221 2222222222 224455678899999999999999998888888877776666554432 21345
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 040770 228 FFIPGWLHVIMGILVLTLGQD 248 (521)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~~ 248 (521)
|++.+.++++..++.++++||
T Consensus 418 ~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 418 FLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred chhhHHHHHHHHhheeEEEee
Confidence 556566666666666666443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=77.13 Aligned_cols=145 Identities=17% Similarity=0.040 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHH
Q 040770 283 VFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLG 362 (521)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 362 (521)
.....-+.....+.....|+..|+.+..|+++..+|.+..+.=+.-++.-++.|.++||..+|.+.+++ .++.+.+..
T Consensus 16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP--~lL~g~ip~ 93 (467)
T COG2211 16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP--WLLWGAIPF 93 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH--HHHHHhHHH
Confidence 344444445555666678899999999999999999999999999999999999999998877665443 455555555
Q ss_pred HHHHHHhhccC------cHHHHHHHHHHHHhhhhhcccccccccccc--cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 363 GVFCVWLGRAE------SLPIAVVAMVLFSMGTQAACGATFGIVPFV--SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 363 ~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++...+....+ +....++...++++++.....+..++.+++ .+++|.+..+.-..+..+|+.+...+
T Consensus 94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~ 168 (467)
T COG2211 94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL 168 (467)
T ss_pred HHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444443 344566667778888888887788887766 68899999999888888876665443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-06 Score=85.60 Aligned_cols=114 Identities=17% Similarity=0.052 Sum_probs=98.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 040770 308 DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSM 387 (521)
Q Consensus 308 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (521)
+.+..+.....+..+++.++..+|.++.|.++||+|||+ ++..+.++..++.+...+.++.+...++-++.|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~-------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKP-------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHH-------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 445667788888889999999999999999999999996 7778888888888888899999999999999999
Q ss_pred hhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 388 GTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 388 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+......+.+..|+ +++.|+.+..+ ......++.+++.+
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~ 225 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAG 225 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHH
Confidence 9999999888887755 99999999999 77777777777765
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-05 Score=80.15 Aligned_cols=174 Identities=11% Similarity=0.005 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
...+.+..+-............+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++
T Consensus 297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~ 375 (513)
T KOG0254|consen 297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI 375 (513)
T ss_pred HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence 33344444444444555666778888888876544 55556666667777778899999999999999999999999998
Q ss_pred HhhccCH-----------HHH---HHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHH
Q 040770 145 MSFVSDA-----------QGY---IAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVF 210 (521)
Q Consensus 145 ~~~~~~~-----------~~l---~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~ 210 (521)
.+..... ..+ .++-++..+..+..+....+.+|.+|.+-|+++.++......+...+-....+...
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~ 455 (513)
T KOG0254|consen 376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT 455 (513)
T ss_pred HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754211 111 11222222333333444578899999999999999876555443322221111111
Q ss_pred HHHHHhCCCCCCCchHHHHHHHHHHHHHHH-HHHHhccc
Q 040770 211 EVIKLAGATPFTAWRIAFFIPGWLHVIMGI-LVLTLGQD 248 (521)
Q Consensus 211 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~~~ 248 (521)
.. . ++...|...+..+.+..+ ..+++.||
T Consensus 456 ~~--------~-~~~~~f~~f~~~~~~~~~~fv~~~~pE 485 (513)
T KOG0254|consen 456 EA--------L-GIGGTFGYFGGICLLSLIIFVFFFVPE 485 (513)
T ss_pred Hh--------c-cccchHHHHHHHHHHHHHHHheEEccc
Confidence 11 0 245566666666665555 45555333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00012 Score=70.87 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhhhhcchhchHHHHhh--cCCCccchhhHHHHHHHHHHHHhhhhHhhhh-----hcCCcHHHHH-HHHHH
Q 040770 67 LAWVSFFTCFISTFAAAPLVPIIRDN--LNLTKTDVGNAGVASVSGSIFSRLIMGAVCD-----LIGPRYGTSF-LLLLS 138 (521)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~ 138 (521)
++.+.+++.+.-.......+|.+.++ -++|.+|.+.. |+....+. .-++|.++.| |+||||.-++ ...+.
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~f-Sla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIF-SLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheee-eeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 34556666666655554578888888 68888888753 22222222 3445666655 7999987655 33333
Q ss_pred HHHHHHHhhcc----------------------CH--HHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhh
Q 040770 139 APAVFCMSFVS----------------------DA--QGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGG 193 (521)
Q Consensus 139 ~~~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~ 193 (521)
++..+..+... +. ..+...-++.=+-.+. -.++-.+.-....+++++.+......
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 33333333221 01 1122222222222233 23445566666778888888887766
Q ss_pred hhhhhhHHHHhHHHHHHH--HHHHh--CCCCCCC---chHHHHHHHHHHHHHHHHHHHhcccCCCCChhhh---------
Q 040770 194 WGDMGGGVTQLLMPLVFE--VIKLA--GATPFTA---WRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGAL--------- 257 (521)
Q Consensus 194 ~~~~G~~ig~~~~~~l~~--~~~~~--~~~~~~~---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--------- 257 (521)
+.++|..++..+.-.+-. ...++ ......| -..-..+.|.+.++..+...++.+|.|+.+....
T Consensus 162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~ 241 (544)
T PF13000_consen 162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG 241 (544)
T ss_pred HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence 666666555432222111 00000 0001111 1222344555556666666666666553221000
Q ss_pred -hc-----cCCCc---c---ccc---hhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHH
Q 040770 258 -QK-----KGNVN---K---DKF---SKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAA 322 (521)
Q Consensus 258 -~~-----~~~~~---~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~ 322 (521)
.+ .++++ . ... .+.+..+++-|.+..+++.....-..+..-......-+.|. |++.++.+++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G~~KE~LAl~~l 320 (544)
T PF13000_consen 242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-GLSKEDLALLVL 320 (544)
T ss_pred cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHc-CCCHHHhHHHHH
Confidence 00 00000 0 011 23345567778888777777766665555554555556665 999988777554
Q ss_pred HHHHHHHhhhhhhHHHhhhhh
Q 040770 323 TFGMANIFARPFGGYASDVAG 343 (521)
Q Consensus 323 ~~~~~~~~~~~~~g~l~d~~~ 343 (521)
+ .+...++.++++.|+.
T Consensus 321 i----~~P~qii~~~~~~Kws 337 (544)
T PF13000_consen 321 I----DFPFQIILPYYIGKWS 337 (544)
T ss_pred H----hhhHHHHHHHHhhhhh
Confidence 4 3444455555555553
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-06 Score=59.97 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
-..+++.+.......|.+|...++.|+++.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3445566666677788889999999999999999999999999999999999999999988887766554
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.3e-05 Score=65.66 Aligned_cols=234 Identities=11% Similarity=0.046 Sum_probs=116.8
Q ss_pred cchhhHHHHhhhhhhhhhHHHHhHHHHHHH-HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhcc
Q 040770 182 KILGLVNGCAGGWGDMGGGVTQLLMPLVFE-VIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKK 260 (521)
Q Consensus 182 ~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 260 (521)
|+|+....+...+.++|..+..+ |.+.. -.... ....|++++.+.+++.++..++..++-.+......++ +++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~i--pF~~~~~~~~~---~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~-k~~ 75 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNI--PFLISSSVVIA---LTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKE-KQE 75 (267)
T ss_pred CccceeeeeccccchhhHHHHHh--hHHhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc-ccc
Confidence 56777777777778888877543 23322 11100 1126999999999888777776666633321111110 111
Q ss_pred CCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH-------------HHHHHHHHHHHH
Q 040770 261 GNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLH-------------TAGTIAATFGMA 327 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~-------------~~~~~~~~~~~~ 327 (521)
+.+...+......+.+|++..|...+.+........ ..+.+.+.......++. .......++..+
T Consensus 76 k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V--~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g 153 (267)
T PF07672_consen 76 KENSTLSKKPSYKSILKEKETWKWILIYGIWLVVVV--FPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAG 153 (267)
T ss_pred cccccccccchHHHHHccchHHHHHHHHHHHheeEE--EeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHH
Confidence 111111123668889999999998888775443211 11112222211111111 112333344444
Q ss_pred HHhhhhhhHHHhhhhhcccccchhHHHH--HHHHHHHHHHHHHh-hccC----cHHHHHHHHHHHHhhhhhccccccccc
Q 040770 328 NIFARPFGGYASDVAGRLFGMRGRLWTL--WIFQTLGGVFCVWL-GRAE----SLPIAVVAMVLFSMGTQAACGATFGIV 400 (521)
Q Consensus 328 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~ 400 (521)
..+|.+..|......-+|+ +.... ..+.+...+..+.. .... +....+++.++.|++.=+..+....+.
T Consensus 154 ~~~G~~~ig~~nkt~~kRk----~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~lP 229 (267)
T PF07672_consen 154 YFLGPFTIGLWNKTNYKRK----PFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVILNLP 229 (267)
T ss_pred Hhhhceeeccchhhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHhcCh
Confidence 4566566666665433332 11221 12222222222221 2222 234455556666666555555554444
Q ss_pred ccc---cccchhhhhhhhhhhhhHHHHhhh
Q 040770 401 PFV---SRRSLGILSGLTGAGGNFGSGLTQ 427 (521)
Q Consensus 401 ~~~---~~~~~~~~~g~~~~~~~~g~~i~~ 427 (521)
.|. .|+..|.-.|+...++++.-.+.-
T Consensus 230 hEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~ 259 (267)
T PF07672_consen 230 HEYKGYNPKKIGIQFGLIWGFGYIFYTIYD 259 (267)
T ss_pred hhhcCCCcceehhHHHHHHHHHHHHHHHHH
Confidence 444 677788888888777776555443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=6e-05 Score=67.95 Aligned_cols=129 Identities=17% Similarity=0.088 Sum_probs=85.9
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 040770 292 MGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR 371 (521)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (521)
.+..+.+..|-| .+++.+|+|..+...+.....++..+| ++.|.+.|++|.+. .+.++.+...+++..+..
T Consensus 15 ~Gt~Y~Fs~yS~-~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-------~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 15 SGTTYTFSAYSP-QLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-------VLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred cCcccchhhhhH-HHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHH
Confidence 344555554444 456778999999999998888888774 78899999999874 666777777666665543
Q ss_pred c-------CcHHHHHHHHHHHHhhhhhccccc-ccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 372 A-------ESLPIAVVAMVLFSMGTQAACGAT-FGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 372 ~-------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
. .+.|...+..++.+.+........ .+.+... |++||++.|+.-....+++.+-..++
T Consensus 86 ~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 86 AVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred HHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHHHH
Confidence 2 133444444444444332222222 2223344 56899999999999999988888773
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=78.53 Aligned_cols=134 Identities=15% Similarity=0.148 Sum_probs=102.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 040770 308 DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSM 387 (521)
Q Consensus 308 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (521)
+..++...+.+.+.+++.++.+++.+.++.+.||+.-.+ .+....++.++..++-....+.+.+++.-++.|+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~-------~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl 146 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK-------GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGL 146 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445677788899999999999999999999999999442 3333333333333333346788999999999999
Q ss_pred hhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhhHhc-------ccchhHHHHHHHHHHH
Q 040770 388 GTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLAFFS-------NSKFSTATGISLMGAL 448 (521)
Q Consensus 388 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l~~~-------~~~~~~~~~~~~~~~~ 448 (521)
+.+..+|....+.. ...+++++.-+|+.+....+|+++++.+... ...+++.+.+++-+++
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i 215 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVI 215 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHH
Confidence 99999998888866 6689999999999999999999999988322 2355666666665544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.8e-05 Score=55.27 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhccc
Q 040770 283 VFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLF 346 (521)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 346 (521)
.+-..+++.++....+..++|.|+++ .|+++.++|++.++..+..+++.++.|+++||.++++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 34556667777788888899999987 5999999999999999999999999999999999985
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0011 Score=63.28 Aligned_cols=124 Identities=13% Similarity=-0.050 Sum_probs=66.5
Q ss_pred hhhHHHHHHHhcCC---CHHHHHHHHHH-HHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHH------H
Q 040770 299 NNIISEFMYDRFNL---KLHTAGTIAAT-FGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCV------W 368 (521)
Q Consensus 299 ~~~~~~~l~~~~g~---s~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 368 (521)
...+|.+..+..+- +.....++... +.+...+|.+...++-++-.|+. +.....=.+..-.+. .
T Consensus 263 LsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l------~i~v~lR~lfiPlF~~cn~~~~ 336 (406)
T KOG1479|consen 263 LSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKL------TIPVLLRLLFIPLFLLCNYPPL 336 (406)
T ss_pred eEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCcee------hHHHHHHHHHHHHHHHhccCCC
Confidence 34567666554321 22333344445 77788888766666654433321 111111111111111 1
Q ss_pred hhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhh
Q 040770 369 LGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQL 428 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~ 428 (521)
.....+.++.+....++|+..|-.....+.+.+ .++++++-.+-.+...+-..|-+.|..
T Consensus 337 ~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 337 PVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred CceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 122346677788888899988888888888887 456666555544444444444444443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=70.77 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhhhhcch-hchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhH-hhhhhcCCcHHHHHHHHHHHHH
Q 040770 64 TFHLAWVSFFTCFISTFAAA-PLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMG-AVCDLIGPRYGTSFLLLLSAPA 141 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~~~ 141 (521)
.+.++...++....+..... ...-.+...++++..+.+...+...+...+++++.. .+...+|-|+++..|++.-.+.
T Consensus 242 ~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~ 321 (463)
T KOG2816|consen 242 LLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQ 321 (463)
T ss_pred chHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHH
Confidence 34444555555555543333 233345667899999999888888888888888777 7777889999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHHHhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 142 VFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 142 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
..+.+++++.|+++...++.++.....+...+.++.+..++++|+++++....-.+...+++.+-..+....
T Consensus 322 ~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 322 LLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999999988887788899999999999999999999998888777777776555554443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=67.52 Aligned_cols=357 Identities=13% Similarity=0.060 Sum_probs=196.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhh-cchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc-CCcHHHHHHHHH
Q 040770 60 PHMRTFHLAWVSFFTCFISTF-AAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-GPRYGTSFLLLL 137 (521)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~ 137 (521)
..|+....+.....+.-+... ....++..+.++++.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++
T Consensus 34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i 113 (571)
T KOG1237|consen 34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI 113 (571)
T ss_pred chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444433333333433332 345677888899998887777788888888888889999999986 899999999999
Q ss_pred HHHHHHHHhhcc----------------------C---HHHHHHHHHHHHhhhhh-hhhHHHHHHhhcC---Cc---chh
Q 040770 138 SAPAVFCMSFVS----------------------D---AQGYIAARFMIGFCLAT-FVSCQYWTTIMFN---GK---ILG 185 (521)
Q Consensus 138 ~~~~~~~~~~~~----------------------~---~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~---~~---~r~ 185 (521)
..+|..+..++. + ...++.+.-+..+|.|+ -+....+=+|-++ ++ .+.
T Consensus 114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~ 193 (571)
T KOG1237|consen 114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP 193 (571)
T ss_pred HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence 888866544321 1 12455566677778887 4566677788887 22 223
Q ss_pred hHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcc----cCCCCCh-------
Q 040770 186 LVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQ----DLPDGNL------- 254 (521)
Q Consensus 186 ~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~----~~p~~~~------- 254 (521)
..+.++....+.|..++.. +.-+.++ ..+|.+.|.+..+...+..++.+...+ +.|...+
T Consensus 194 ~fFnW~yf~~~~g~l~a~t----~~vyiq~-----~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~V 264 (571)
T KOG1237|consen 194 SFFNWFYFSQNGGALLAQT----VLVYIQD-----NVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQV 264 (571)
T ss_pred cchhHHHHHHHHHHHHHHH----HHHhhhh-----cccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHH
Confidence 5666776666677655543 3333322 229999999988876655444433221 1121110
Q ss_pred ------hhh-----------------hc-cC-------------CCc--------------cccchhhHHhhhchhHHHH
Q 040770 255 ------GAL-----------------QK-KG-------------NVN--------------KDKFSKVFWYGIKNYRTWV 283 (521)
Q Consensus 255 ------~~~-----------------~~-~~-------------~~~--------------~~~~~~~~~~~~~~~~~~~ 283 (521)
++. .. +. .+. ..+..++.+..+|..+.|.
T Consensus 265 lvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~ 344 (571)
T KOG1237|consen 265 LVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWL 344 (571)
T ss_pred HHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHH
Confidence 000 00 00 000 0011244555666666676
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHh----cCCCHHHHHHHHHHHHHHHHhhhhhhHHH----hhhhhccc-ccchhHHH
Q 040770 284 FFVLYGFSMGIELTTNNIISEFMYDR----FNLKLHTAGTIAATFGMANIFARPFGGYA----SDVAGRLF-GMRGRLWT 354 (521)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l----~d~~~~~~-~~~~~~~~ 354 (521)
..+.+.+.+.....+...-..-+... +.+++.....+ ..+...+..++.-++ ..|+.++. +. ..+.-
T Consensus 345 ~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f---~~~~~~~~iplydr~~vP~~~~~t~~~~~~-t~lqr 420 (571)
T KOG1237|consen 345 TTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVF---ILLSILIFIPLYDRVIVPFARKLTGNPFGI-TPLQR 420 (571)
T ss_pred HHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHH---HHHHHHhhhhhcceeehhhhhhhcCCCCCC-Chhhe
Confidence 66666555544443322222222211 22233332222 222222222222222 22222211 11 11111
Q ss_pred HHHHHHHHHHHHHHhhc-----------------cCcHHHHHHHHHHHHhhhhhcccccccc-cccccccchhhhhhhhh
Q 040770 355 LWIFQTLGGVFCVWLGR-----------------AESLPIAVVAMVLFSMGTQAACGATFGI-VPFVSRRSLGILSGLTG 416 (521)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 416 (521)
+-++.++..+.+...+. .-+.++.+.-.++.|++-.........+ -.+.|++.|+.++++..
T Consensus 421 ig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l 500 (571)
T KOG1237|consen 421 IGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWL 500 (571)
T ss_pred eeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHH
Confidence 11222222222222111 1145566777888888887766666665 45789999999999999
Q ss_pred hhhhHHHHhhhhh
Q 040770 417 AGGNFGSGLTQLA 429 (521)
Q Consensus 417 ~~~~~g~~i~~~l 429 (521)
....+|..++..+
T Consensus 501 ~t~a~G~~lss~L 513 (571)
T KOG1237|consen 501 LTVAVGNYLSSVL 513 (571)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888876
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0024 Score=63.31 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhh---------ccCcHHHHHHHHHHHH
Q 040770 316 TAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG---------RAESLPIAVVAMVLFS 386 (521)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g 386 (521)
..-....+++++-.+|+.+..+.. .-.+|. + .+....++=++....+++.. ..++.+..++.++++|
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~--~-~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~g 383 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDS--R-WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFG 383 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCc--c-chHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHH
Confidence 344566778888888888654431 111111 0 11111111111111111111 2346667777888899
Q ss_pred hhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 387 MGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+..|......+.+.+ .+++++|..+..+...+-.+|-.+|..+
T Consensus 384 ltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 384 FSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777766 5577888888788777777777777665
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00059 Score=67.10 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=76.9
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh---hccC--cH
Q 040770 302 ISEFMYD-RFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL---GRAE--SL 375 (521)
Q Consensus 302 ~~~~l~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~ 375 (521)
.-.|+++ ..+.+.+..|++.+...++..++.+..|+...|.+.-+ + .++.+.+++.++.+++ ...+ ..
T Consensus 57 ~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k---~---Pli~s~ii~~~g~llY~~l~~~~~~~~ 130 (488)
T KOG2325|consen 57 MWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVK---K---PLIVSFLIAIIGNLLYLALAYVPNGVK 130 (488)
T ss_pred cchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcc---c---CHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 3345554 24778889999999999999999999999999988421 1 3334444444444443 3333 34
Q ss_pred HHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 376 PIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.+++-++.|++.+.. ...-.++++ ..++.|.++.+..+....+|.++||.+
T Consensus 131 y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 131 YLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 55666666676665332 333445443 345667777777777667777777765
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0002 Score=70.12 Aligned_cols=107 Identities=9% Similarity=0.036 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc---cC------HHHHHHHHHHHHhhhhhh-hhHHHHHHhhcCCc---chhhHHHHhhhhh
Q 040770 129 YGTSFLLLLSAPAVFCMSFV---SD------AQGYIAARFMIGFCLATF-VSCQYWTTIMFNGK---ILGLVNGCAGGWG 195 (521)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 195 (521)
|+++++.+++.+|.++..++ .. .+.++++-.+.++|.|+. +....+.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 67888999999999884443 22 367889999999999974 56778999999765 4667788888888
Q ss_pred hhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040770 196 DMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLT 244 (521)
Q Consensus 196 ~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 244 (521)
++|..++..+.+.+.+ +.+|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~---------~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ---------NYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHH---------CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcc---------ccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999877766666553 239999999998886665554444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0022 Score=58.18 Aligned_cols=308 Identities=13% Similarity=0.107 Sum_probs=164.4
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhh-hhhhHHHHHHhh
Q 040770 100 VGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLA-TFVSCQYWTTIM 178 (521)
Q Consensus 100 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~-~~~~~~~~i~~~ 178 (521)
.|.+.-+-.+...+..+.+..+.||+---.=+.+..++.+.+.++.+++++.++-+++-.+..++.| +...-.++-+ .
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-R 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence 4556666677777888888889998754444455667778888999999999999999999888888 4444433333 2
Q ss_pred cCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhh-
Q 040770 179 FNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGAL- 257 (521)
Q Consensus 179 ~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~- 257 (521)
+++. ..+.+..+.+..+ ++|..-...+... .+. +-|...++...+-++.+...++++++ ||+.....
T Consensus 143 Y~~~----~i~~WSSGTGgAG----liGa~SYa~lT~~--~~~-spk~Tlli~l~lP~lfa~~yf~lL~~-pes~~~ptl 210 (409)
T KOG3880|consen 143 YPSI----VIAGWSSGTGGAG----LIGASSYAFLTSW--ANL-SPKSTLLIMLFLPALFAFAYFFLLKS-PESVYSPTL 210 (409)
T ss_pred CCCc----eeccccCCCCcch----hhhhhHHHHHhhh--cCC-ChhhHHHHHHHHHHHHHHHHHheeCC-CccccCCCc
Confidence 3222 2333333333333 4443333333221 112 56777777776666666666666554 54432110
Q ss_pred h-------cc-----CCCcc--ccchhhHHhh-hchhHHHHHHHHHHHHHHHHHHHhhhHHHH-HHH-hcCCCHHH---H
Q 040770 258 Q-------KK-----GNVNK--DKFSKVFWYG-IKNYRTWVFFVLYGFSMGIELTTNNIISEF-MYD-RFNLKLHT---A 317 (521)
Q Consensus 258 ~-------~~-----~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-~~g~s~~~---~ 317 (521)
+ ++ ..+++ .......++- .+-++.+...+-....+...+.++.-+... +.+ ..|++... .
T Consensus 211 ~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqY 290 (409)
T KOG3880|consen 211 QPSTEIIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQY 290 (409)
T ss_pred CccceeccCCCCcccccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcc
Confidence 0 00 00011 0000111111 111223333344444444444444332222 111 12443322 3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHH---HHhhccCcHHHHHHHHHHHHhhhhhccc
Q 040770 318 GTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFC---VWLGRAESLPIAVVAMVLFSMGTQAACG 394 (521)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (521)
-+....+.++-.+.+ -+-++-+- + .++.+.+..++-.+.. .++.++++.+.+.+..+.-|+..|..+.
T Consensus 291 RwyqvlYQlGVFiSR-----SS~~~~~~---p-~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYV 361 (409)
T KOG3880|consen 291 RWYQVLYQLGVFISR-----SSINLFTM---P-YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYV 361 (409)
T ss_pred hhhheeeeeeEEEEe-----ccceEEec---h-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHH
Confidence 344445554322221 11111111 1 2344444444433332 2456677888777777778877777776
Q ss_pred cccccc-ccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 395 ATFGIV-PFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 395 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
..+--+ .+.+++.|-.+++.....-.+|..++..+
T Consensus 362 NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~l 397 (409)
T KOG3880|consen 362 NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLL 397 (409)
T ss_pred HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHH
Confidence 655544 47899999999999999888888888776
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=68.60 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=89.6
Q ss_pred HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh-hhcccccchhHHHHHHHHHHHHHHHHHhhccC
Q 040770 295 ELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDV-AGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE 373 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (521)
++++...+..|+.+.+|++...+..+...+....-+..+++|+++|+ +|+++ .+.++.++..++..++....
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~-------tIl~~~ii~~lG~~llai~a 75 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK-------TILYLSIVYVVGHALLSFGA 75 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 34555667777777789999888888777777777888899999996 45543 55566666666655554321
Q ss_pred --------cHHHHHHHHHHHHhhhhhcccccccccccc-cc---cchhhhhhhhhhhhhHHHHhhhhh
Q 040770 374 --------SLPIAVVAMVLFSMGTQAACGATFGIVPFV-SR---RSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 374 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~---~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.....++.+.+..+|.++.-+...+...+. .+ +.+-....+.....++|+++++.+
T Consensus 76 ~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i 143 (654)
T TIGR00926 76 IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTII 143 (654)
T ss_pred CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122355667777778887778777776533 22 346677888888889999988876
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0083 Score=56.44 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=74.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 040770 308 DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSM 387 (521)
Q Consensus 308 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 387 (521)
+.+|++..+++.++....+.+.+...+.|.++||+|||+ ..+...++..+.++ .-..++.+.+++.=++.|+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-------~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGi 133 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK-------ACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGI 133 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHH
Confidence 458999999999999988999999999999999999986 55555555555543 4455788888888888888
Q ss_pred hhhhcccccccc-cc-----cccccchhhhhhhhh
Q 040770 388 GTQAACGATFGI-VP-----FVSRRSLGILSGLTG 416 (521)
Q Consensus 388 ~~~~~~~~~~~~-~~-----~~~~~~~~~~~g~~~ 416 (521)
.....+...=++ +. ..|++..+...+...
T Consensus 134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t 168 (354)
T PF05631_consen 134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT 168 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 887777766544 22 225555555555444
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.023 Score=52.35 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV 142 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 142 (521)
+.+.++..++++.+........+...+..++|. .+ .....+..+.+.++.+.+..++|.|+++.++...+....
T Consensus 29 knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~----~s--l~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi 102 (390)
T KOG3097|consen 29 KNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGT----VS--LGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI 102 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc----ch--hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444444442 11 223334445566666789999999999999888776643
Q ss_pred HHHhhccCHHHHHHHHHHHHhhhhh
Q 040770 143 FCMSFVSDAQGYIAARFMIGFCLAT 167 (521)
Q Consensus 143 ~~~~~~~~~~~l~~~r~l~G~~~~~ 167 (521)
.. =+=+.|..++-.-...|++.+.
T Consensus 103 A~-Nl~pr~~tlVPa~~~~G~aa~p 126 (390)
T KOG3097|consen 103 AA-NLEPRYETLVPAGLVLGMAAGP 126 (390)
T ss_pred Hh-hcchhHHhhccHHHhhcccccc
Confidence 32 2336788888899999999884
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=63.49 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH---
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC--- 144 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~--- 144 (521)
+.+.++..++.+..+.+.+. +..++.-...+..+...+|.+|..++.--.. +. |+-+-+++.+-..+..+..++
T Consensus 252 L~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~-~~-rir~lwils~LQ~~nl~~~~l~s~ 328 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLP-FF-RIRRLWILSLLQVINLVFLLLQSW 328 (402)
T ss_pred HHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhccee-ee-ehhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544443332221 1122333456777788888887766643221 11 332222222222222222222
Q ss_pred HhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 145 MSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 145 ~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
.-+.++.|..++.-+..|+..|. +.-+...+.|..++++|..++|....+-++|..++.+++-.+-..+
T Consensus 329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~~L 398 (402)
T PF02487_consen 329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEPWL 398 (402)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 23468899999999999999995 7777788888899999999999999999999977777665554443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0043 Score=61.83 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=105.6
Q ss_pred CCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc----------cCHHHHHHHHHHHHhh
Q 040770 95 LTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV----------SDAQGYIAARFMIGFC 164 (521)
Q Consensus 95 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~~ 164 (521)
.++...+.+..+..++..++..+.....-++.-|+++.++.++.++..+....- ++.+-.+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 788888888888888889999998888888888899888888777666543221 2222233344555555
Q ss_pred hhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 040770 165 LAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVL 243 (521)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 243 (521)
... +.+...+++|..|+..-|...++..+..++|..++..++..+...+.-.. +++.+-.+..++..++.++...+..
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~-~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR-DDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-ccccchHHHHHHHHHHHHHHHHHHH
Confidence 553 67888999999999999999999999999999999988888877764211 1233334455555555544333333
Q ss_pred Hh
Q 040770 244 TL 245 (521)
Q Consensus 244 ~~ 245 (521)
++
T Consensus 411 lL 412 (433)
T PF03092_consen 411 LL 412 (433)
T ss_pred Hc
Confidence 44
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.015 Score=56.14 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc--C----cH
Q 040770 302 ISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA--E----SL 375 (521)
Q Consensus 302 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~ 375 (521)
+..+....|| +...+-++..++.+..++..+.+.|+.||+|-|. ...++..+.+++..+=... + ..
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~-------a~llgt~ln~iGa~Ir~iss~p~v~~~f 138 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRT-------ALLLGTVLNGIGAWIRLISSLPFVPPLF 138 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHH-------HHHHHHHHHHHHHHHhhhccCccccccc
Confidence 3445556677 6667778888999999999999999999999875 5566666666655543222 1 12
Q ss_pred H--HHHHHHHHHHhhhhhccccccccc---c--cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 376 P--IAVVAMVLFSMGTQAACGATFGIV---P--FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 376 ~--~~~~~~~~~g~~~~~~~~~~~~~~---~--~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+ +....-.+.+ ...+-...+. + -.++++|+++..+..+...+|.+++..+
T Consensus 139 ~~~l~~~Gq~iaa----~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 139 RRPLTHTGQSIAA----AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred hhhhhHHhHHHHH----HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 2 2222222222 2223333332 2 3489999999999888877777666554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.016 Score=56.96 Aligned_cols=138 Identities=10% Similarity=0.042 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFC 144 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 144 (521)
.+...++..+-++....+...+..+...-|+++..+|..-+...+....+.+...++.+|+|..+.=++++..-..+..+
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 33445555555666556677777777777999999999999999999999999999999999888888777654444433
Q ss_pred Hhh---ccCH--HHHHHHHHHHHhhhh-----hhh-hHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHH
Q 040770 145 MSF---VSDA--QGYIAARFMIGFCLA-----TFV-SCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVT 202 (521)
Q Consensus 145 ~~~---~~~~--~~l~~~r~l~G~~~~-----~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig 202 (521)
+.. .+.- ...-+.-++.|+..+ ++- ...-++-|..|+++||...|...+..++-..+-
T Consensus 340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 332 2211 222233334444433 333 667788999999999999999987776655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.055 Score=55.14 Aligned_cols=139 Identities=13% Similarity=0.044 Sum_probs=74.7
Q ss_pred HHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHH---HHHHHH-
Q 040770 71 SFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSA---PAVFCM- 145 (521)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~- 145 (521)
..++.++....+-.+... +..-+|-+..+.+.+.+++.+|.++|+.+++++.++.-++ ...+-+.+.. ++..+.
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~ 100 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILY 100 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333 3445688888899999999999999999999887432222 2222111111 111111
Q ss_pred ---hhccCH-HHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHH
Q 040770 146 ---SFVSDA-QGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFE 211 (521)
Q Consensus 146 ---~~~~~~-~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 211 (521)
++...+ ..++..-++.++..|+ +|....+..+.. .++-+...|-......+|.++|.++.+++.-
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 101 AAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 111111 1123334456666665 554444444322 2234556677777778888888776665543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.036 Score=53.70 Aligned_cols=125 Identities=10% Similarity=0.032 Sum_probs=79.7
Q ss_pred HHhhhHHHHHHHh-cCCCHHHHHH-HHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc
Q 040770 297 TTNNIISEFMYDR-FNLKLHTAGT-IAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES 374 (521)
Q Consensus 297 ~~~~~~~~~l~~~-~g~s~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (521)
-...++..|+.+. .|++..+..- ++-+..-.....-+....+.|.++-|. ++++..+...+...++.+..+
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp-------viil~~~~~i~t~~lll~~~s 93 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP-------VIILQALSYIITWLLLLFGTS 93 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHCc
Confidence 3446777788775 7888877653 222222334445557788999999885 666666665666667777788
Q ss_pred HHHHHHHHHHHHhhhhhcccccccc-cccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 375 LPIAVVAMVLFSMGTQAACGATFGI-VPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
....-+.-+++|+....- ...+++ -..+++++--++.+.......+|.+++..+
T Consensus 94 v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~l 148 (412)
T PF01770_consen 94 VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLL 148 (412)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776543 333444 335566666677766666655555554444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=42.25 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=56.8
Q ss_pred HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCc
Q 040770 295 ELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAES 374 (521)
Q Consensus 295 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (521)
-+.+...+|...++ .++|..+.+++.+...++..+|.+...++.++..++. .+..+.+...+..+.+.+.++
T Consensus 8 RFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 8 RFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR-------LLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 44555667766655 5999999999999999999999999999888755443 666677777777777776665
Q ss_pred HHH
Q 040770 375 LPI 377 (521)
Q Consensus 375 ~~~ 377 (521)
.+.
T Consensus 80 ~~~ 82 (85)
T PF06779_consen 80 FWL 82 (85)
T ss_pred hHH
Confidence 543
|
Note that many members are hypothetical proteins. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=51.54 Aligned_cols=102 Identities=9% Similarity=0.068 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhhHhhhh---hcCCcHHHHHHHHHHHHHHHHHhhc------------------cCHHHHHHHHHHHHhh
Q 040770 106 ASVSGSIFSRLIMGAVCD---LIGPRYGTSFLLLLSAPAVFCMSFV------------------SDAQGYIAARFMIGFC 164 (521)
Q Consensus 106 ~~~~~~~~~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~ 164 (521)
...+|..++..+.+.+.+ ++||++.+.++.++..++.++.-.. +++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 334455555566666665 5899999999999988888876542 2466778888999999
Q ss_pred hhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHH
Q 040770 165 LAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPL 208 (521)
Q Consensus 165 ~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 208 (521)
-+. ....+.++...+ +++|..+.++...-..++..++.+..+.
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 997 457778888888 7888888888777666766655554443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.08 Score=53.94 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=64.6
Q ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh----hcc
Q 040770 297 TTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL----GRA 372 (521)
Q Consensus 297 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 372 (521)
.+.....-.+...+|.+....+.+.+++.++..+|+.+++++.++..++. ....+...++.+++..++ .+.
T Consensus 32 ~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-----~~~e~~i~l~~~~~~~ll~~~~~~~ 106 (521)
T PRK03612 32 VYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-----VAVELLLALLGGLSALILYAAFAFQ 106 (521)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455556888888888888888888888888877764333321 111111111111111111 111
Q ss_pred C-cHHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 373 E-SLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 373 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
. .....+..+++.++..|+..|....+......+..+...|-......+|+++|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~ 164 (521)
T PRK03612 107 GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLA 164 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHH
Confidence 0 11122334445666677777766555443322233445555555566666665554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.057 Score=44.95 Aligned_cols=102 Identities=11% Similarity=-0.073 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccc
Q 040770 320 IAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGI 399 (521)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 399 (521)
-.++......+..++.+.+.+++|.|. .+.++.+...+.... .+.++.+.++...++.|++.+..+...-.+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~-------sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKW-------SMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHH-------HHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 334556667777788899999999874 555555554433322 244567788888899999998888877666
Q ss_pred cccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 400 VPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 400 ~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+.+. .++.+++-.++...+...+.++|..+
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5543 56778888888888888777777664
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.001 Score=67.73 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=2.1
Q ss_pred HHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc
Q 040770 293 GIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA 372 (521)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (521)
+...++..-.-+-++++|+++..++|++.+.+-++.++..++..++.+|..|-+ ++.++.++.+++.+++.+.
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr-------wig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR-------WIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-------eeeecHHHHHHHHHHHhcc
Confidence 334444444444567889999999999999999999999998899888755433 5666666666666554321
Q ss_pred C--------------------------------------------------cHHHHHHHHHHHHhhhhhccccccccccc
Q 040770 373 E--------------------------------------------------SLPIAVVAMVLFSMGTQAACGATFGIVPF 402 (521)
Q Consensus 373 ~--------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (521)
+ -...+++..++.|+|....++...+++.|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 1 01133444556666776677777788874
Q ss_pred -ccccchhhhhhhhhhhhhHHHHhhh
Q 040770 403 -VSRRSLGILSGLTGAGGNFGSGLTQ 427 (521)
Q Consensus 403 -~~~~~~~~~~g~~~~~~~~g~~i~~ 427 (521)
++++..+...|+......+|.++|=
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf 194 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGF 194 (539)
T ss_dssp --------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHH
Confidence 4788888888888887776665553
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.029 Score=54.23 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHH
Q 040770 283 VFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLG 362 (521)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 362 (521)
.+....+...+....-..++++|+++. |.+....+.+..+.-+.+.+.+++.|..+||..-|.+.|++.. ..+....
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI--~~~s~~i 112 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI--LAGSLLI 112 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccchH--HHhhHHH
Confidence 333333333344444457889999875 9999888888888888899999999999998766665555543 3444444
Q ss_pred HHHHHHhhccCc----------H--HHHHHHHHHHHh-----hhhhcccccccccccc-cccchhh-hhhhhhhhhhHHH
Q 040770 363 GVFCVWLGRAES----------L--PIAVVAMVLFSM-----GTQAACGATFGIVPFV-SRRSLGI-LSGLTGAGGNFGS 423 (521)
Q Consensus 363 ~~~~~~~~~~~~----------~--~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~~~~~g~ 423 (521)
.+.+.++.+..+ . ....+..++.|+ .........-++..++ .++.+.+ +++....+..+|+
T Consensus 113 ~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGn 192 (498)
T KOG0637|consen 113 AVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGN 192 (498)
T ss_pred HHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcc
Confidence 444445444321 1 112233333333 3334445555565544 2233333 7788777777777
Q ss_pred Hhhhhh
Q 040770 424 GLTQLA 429 (521)
Q Consensus 424 ~i~~~l 429 (521)
.++-.+
T Consensus 193 vLGY~~ 198 (498)
T KOG0637|consen 193 VLGYAL 198 (498)
T ss_pred eeeeec
Confidence 776555
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.2 Score=46.92 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=75.2
Q ss_pred hHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccC--cHH
Q 040770 301 IISEFMYDRFNLKL--HTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAE--SLP 376 (521)
Q Consensus 301 ~~~~~l~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 376 (521)
..+.+..+. +.+. ...++......+...++.++.|.+.||.|||+ ....+........++..... +.+
T Consensus 24 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 24 ALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-------VLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-------HHHHHHHHHHHHHHHHHhCccchHH
Confidence 444444443 4444 46788888888888888899999999998873 23222222222222333333 355
Q ss_pred HHHHHHHHHHhhhhhcccccccccccc-cc-cchhhhhhhhhh-hhhHHHHhhhhh
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVPFV-SR-RSLGILSGLTGA-GGNFGSGLTQLA 429 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~~~~~~g~~~~-~~~~g~~i~~~l 429 (521)
...+.....|++.+...+....+..+. ++ +.++...+.... ...++..++|.+
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556777776777777776655 43 477888888777 466677777644
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.52 Score=47.20 Aligned_cols=141 Identities=9% Similarity=-0.044 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhh-hhhhHHHhhhhhcccccchhH
Q 040770 279 YRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNL-----KLHTAGTIAATFGMANIFA-RPFGGYASDVAGRLFGMRGRL 352 (521)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----s~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~ 352 (521)
++++...+..++....++.. --++|..+. +.+...++-+...+...+. .++.+++++|++|++-
T Consensus 7 ~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l----- 76 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL----- 76 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh-----
Confidence 35555555555544433322 123444444 3355666665555555454 7889999999998851
Q ss_pred HHHHHHHHHHHHHH---HHhhccC--------------------------cHHHHHHHHHHHHhhhhhccc-cccccccc
Q 040770 353 WTLWIFQTLGGVFC---VWLGRAE--------------------------SLPIAVVAMVLFSMGTQAACG-ATFGIVPF 402 (521)
Q Consensus 353 ~~~~~~~~~~~~~~---~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 402 (521)
........+....+ ++....+ +.|....+.+...+......+ ..|++++|
T Consensus 77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111111 1111111 122222333334444444445 67888887
Q ss_pred c-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 403 V-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 403 ~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+ .+++..+-+++....+++|..+++.+
T Consensus 157 i~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 157 ITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 67888899999999999999999976
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.56 Score=46.69 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHH
Q 040770 149 SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPL 208 (521)
Q Consensus 149 ~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 208 (521)
++-+..++..++.|+..|- ...+..+..+..++++|..+-.+...+..+|..+|..++-+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777889999999995 56777788888888999998888888777887776655433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.32 Score=50.65 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 040770 290 FSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL 369 (521)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (521)
+......++....-+-++++++++..+.|++...+-++..+...+..+...|..|-+ ++.++.++.+++.++.
T Consensus 107 ~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr-------~Ig~G~~~m~lgsll~ 179 (735)
T KOG3626|consen 107 FAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR-------WIGIGLVLMGLGSLLF 179 (735)
T ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc-------eeeechhHHHHHHHHH
Confidence 333333344445555677889999999999998888888888888888887776654 4555555555555443
Q ss_pred hccC-------------------c--------------------------------HH-HHHHHHHHHHhhhhhcccccc
Q 040770 370 GRAE-------------------S--------------------------------LP-IAVVAMVLFSMGTQAACGATF 397 (521)
Q Consensus 370 ~~~~-------------------~--------------------------------~~-~~~~~~~~~g~~~~~~~~~~~ 397 (521)
.+.+ + .+ ++....++.|+|....++...
T Consensus 180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi 259 (735)
T KOG3626|consen 180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI 259 (735)
T ss_pred hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence 3210 0 11 334455667777777777777
Q ss_pred cccccc-cccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 398 GIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 398 ~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
+++.|. .++......|+..++..+|-++|=.+
T Consensus 260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfll 292 (735)
T KOG3626|consen 260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLL 292 (735)
T ss_pred ccccccccccCCcHHHHHHHHHHHhhhHHHHHH
Confidence 888754 66777888888888777666665443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.50 E-value=3.7 Score=39.89 Aligned_cols=127 Identities=9% Similarity=0.082 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHH
Q 040770 281 TWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQT 360 (521)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (521)
++..++...........+.+..+.|.....+.++ ...+...+.+.+.+..++...+--+...|. |.++........
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~--~~~~~~~l~~~~ 95 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL--RTRVGYLLSLIA 95 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3444444444455566666666666555444444 444444555555555555555554444432 112222222111
Q ss_pred HHHHHHHHhhc--cC-----cHHHHHHHHHHHHhhhhhcccccccccccccccchhhh
Q 040770 361 LGGVFCVWLGR--AE-----SLPIAVVAMVLFSMGTQAACGATFGIVPFVSRRSLGIL 411 (521)
Q Consensus 361 ~~~~~~~~~~~--~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (521)
+..+..+.+.. .. ..+..++..++.+.+.+...+..+...+..|++.....
T Consensus 96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqav 153 (406)
T KOG1479|consen 96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAV 153 (406)
T ss_pred HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHH
Confidence 11111122222 11 24455666677777777788888888888888775443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.038 Score=52.38 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=3.1
Q ss_pred CcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 373 ESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
++.+..++.++++|+..|-.....+.+.+ .++++++..+..+....-.+|-.+|..+
T Consensus 246 ~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 246 NSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---------------------HHHH---------------------------------
T ss_pred cchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788888888777777777766 4577777777777676666676666654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.91 E-value=8.6 Score=37.00 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhh-----hhhccccc
Q 040770 280 RTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASD-----VAGRLFGM 348 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~ 348 (521)
.+..+.+.+..+ +.-.+....+|.+++.. |.|-+..+.....+.=- .--++...++| |+|||+.+
T Consensus 32 ~illLl~LYllQ-GiP~GL~~~iP~lL~ak-~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksW 101 (510)
T KOG3574|consen 32 SILLLLFLYLLQ-GIPLGLIGAIPLLLQAK-GVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSW 101 (510)
T ss_pred hHHHHHHHHHHc-CCchhHhhhhHHHhcCC-CcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccce
Confidence 444455555444 33344444778888754 77777666544332211 12346666777 99998743
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.12 Score=49.05 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhhhhHhhhhh-cCCcHHHHHHH--HHHHHHHHHHh----------hccCHHHHHHHHHHHHhhhhh-h
Q 040770 103 AGVASVSGSIFSRLIMGAVCDL-IGPRYGTSFLL--LLSAPAVFCMS----------FVSDAQGYIAARFMIGFCLAT-F 168 (521)
Q Consensus 103 ~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~--~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~-~ 168 (521)
....+.++-.+|..+.++.-=+ ..+|+....+. +++.-..++|. +-+|-+.+++..++.|+..|- .
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4566777777777776653211 12444433211 22222222221 234567778888899999994 5
Q ss_pred hhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhH
Q 040770 169 VSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLL 205 (521)
Q Consensus 169 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 205 (521)
..+..+..+..++++|..+-.+...+..+|..+|..+
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp HHHH---------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888889999888777777777777665543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.90 E-value=2.2 Score=40.60 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhcchhchHHHHhhcCCCc-cchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLVPIIRDNLNLTK-TDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP 140 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 140 (521)
+..++++.....-.+.+....+..+++-+. ...+.-.-.-.....+..++.|...|+..|+|++...+++--+
T Consensus 32 Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNl 105 (503)
T KOG2601|consen 32 LYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNL 105 (503)
T ss_pred hhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccH
Confidence 456666666665556666666666665322 2222222223334556667788899999999999887766433
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=41 Score=35.01 Aligned_cols=33 Identities=6% Similarity=-0.170 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcc
Q 040770 313 KLHTAGTIAATFGMANIFARPFGGYASDVAGRL 345 (521)
Q Consensus 313 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 345 (521)
++...++.+..++++..+--++.+....++.+|
T Consensus 323 ~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk 355 (571)
T PRK00293 323 DLLLGGLTLYLLALGMGLPLILITTFGNKLLPK 355 (571)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455556666677777755555555555554443
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=86.70 E-value=4.7 Score=41.28 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhccc
Q 040770 321 AATFGMANIFARPFGGYASDVAGRLF 346 (521)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~d~~~~~~ 346 (521)
...+.+.+.+++.+++++...++.++
T Consensus 303 i~~y~~~~~iaGy~S~~~yk~~~g~~ 328 (521)
T PF02990_consen 303 IILYALTSFIAGYVSARLYKSFGGKK 328 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCc
Confidence 33455555666666666666665543
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.14 E-value=20 Score=37.25 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 040770 290 FSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWL 369 (521)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (521)
+-..+++++...+-.|+.+.++.+...+.-....+........+++++++|-+--|. +.+.++.++..+++.++
T Consensus 48 ~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry------~tI~~~s~i~~~G~~~l 121 (571)
T KOG1237|consen 48 LERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY------FTINIGSLISLLGLFGL 121 (571)
T ss_pred HHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHH
Confidence 445556566677778888888888877777776777777778889999999754432 35555555544443332
Q ss_pred hccC----------------------c---HHHHHHHHHHHHhhhhhcccccccccc-ccc---c-cchh--hhhhhhhh
Q 040770 370 GRAE----------------------S---LPIAVVAMVLFSMGTQAACGATFGIVP-FVS---R-RSLG--ILSGLTGA 417 (521)
Q Consensus 370 ~~~~----------------------~---~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~---~-~~~~--~~~g~~~~ 417 (521)
.... + ...++..+.+..+|.++.-+...++.. .++ + +.+. .-+.....
T Consensus 122 t~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf 201 (571)
T KOG1237|consen 122 TLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYF 201 (571)
T ss_pred HHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHH
Confidence 2110 0 124445555666677777777777754 333 2 2222 34444555
Q ss_pred hhhHHHHhhhhh
Q 040770 418 GGNFGSGLTQLA 429 (521)
Q Consensus 418 ~~~~g~~i~~~l 429 (521)
..++|..++-.+
T Consensus 202 ~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 202 SQNGGALLAQTV 213 (571)
T ss_pred HHHHHHHHHHHH
Confidence 556777776665
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=85.28 E-value=4.8 Score=39.32 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhhhhccccccccccc-cc---ccchhhhhhhhhhhhhHHHHhhhhh-HhcccchhHHHHHHH--HHHH
Q 040770 376 PIAVVAMVLFSMGTQAACGATFGIVPF-VS---RRSLGILSGLTGAGGNFGSGLTQLA-FFSNSKFSTATGISL--MGAL 448 (521)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~~~~~~~g~~~~~~~~g~~i~~~l-~~~~~~~~~~~~~~~--~~~~ 448 (521)
+.+++.+.+.++|.++.=+...++..+ ++ ++.+...........++|..+++.+ ....+.+++.+.+.+ ++.+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 578888889999999999988888663 32 4556777888888999999998876 233334444444443 3344
Q ss_pred HHHHhhcC
Q 040770 449 TWGSMLLP 456 (521)
Q Consensus 449 ~~~~~~~~ 456 (521)
+.+..++.
T Consensus 114 ~~~~~f~~ 121 (372)
T PF00854_consen 114 LALIVFLS 121 (372)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 33333333
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.92 E-value=45 Score=31.83 Aligned_cols=136 Identities=14% Similarity=0.044 Sum_probs=76.3
Q ss_pred HHHHHHhhhhcchhchHHHHhhc-CCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH-------HH
Q 040770 71 SFFTCFISTFAAAPLVPIIRDNL-NLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP-------AV 142 (521)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~-------~~ 142 (521)
+.+++..+...+-..+..+...+ |-+--|.+.+.+.|.....+|+...-++.|.--.-+.+..-.++..+ ..
T Consensus 15 aVf~~aa~GlvyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly 94 (508)
T COG4262 15 AVFVCAACGLVYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALY 94 (508)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHH
Confidence 33333333333334444555554 55667899999999999999999988887754333222222222211 11
Q ss_pred HHHhh--ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhc-CCcchhhHHHHhhhhhhhhhHHHHhHHHHH
Q 040770 143 FCMSF--VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMF-NGKILGLVNGCAGGWGDMGGGVTQLLMPLV 209 (521)
Q Consensus 143 ~~~~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l 209 (521)
+.+++ .++-+.+++.-++.|.-.|. .|..+.++.... ..+.-+ +.....-.+|...+.++-|++
T Consensus 95 ~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~r~a~~k~~~---s~vl~~DYLGal~~gLl~p~l 162 (508)
T COG4262 95 LLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQRRQAKAKDLG---SRVLTLDYLGALAGGLLWPFL 162 (508)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhh---hhhhhhHhhhhhhHHHHHHHH
Confidence 12221 34667788888899998887 666666665522 222222 111122466776666655544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.52 E-value=6.2 Score=36.67 Aligned_cols=134 Identities=15% Similarity=0.048 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhhhcchhch--HHHHhhcCCCc-cchhhHHHHHHHHHHHHhhhhHhhhhhcCC-c--HH---HHHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLV--PIIRDNLNLTK-TDVGNAGVASVSGSIFSRLIMGAVCDLIGP-R--YG---TSFLLLLS 138 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r--~~---~~~~~~~~ 138 (521)
+...++..++.+......+ |. .+.+..+. +|.-|....|.+|..++.- +-++=+ + +. +-.-.+++
T Consensus 256 L~~VY~~EY~INQGl~ell~F~c-~~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~f 329 (409)
T KOG3880|consen 256 LALVYFAEYFINQGLAELLLFPC-SHGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLF 329 (409)
T ss_pred HHHHHHHHHHHhhhhHhhEEecc-ccCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHH
Confidence 4455555555444333221 21 34444443 4578888888776543321 111111 1 11 22233444
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHH
Q 040770 139 APAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMP 207 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 207 (521)
.+......+.+++|..++.-+.-|+-.|+ ++-..--+.+..++++|-.+|+....+-++|..++.+++-
T Consensus 330 f~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 330 FLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 55555667789999999999999988885 6666666777788999999999998888888876665543
|
|
| >PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins | Back alignment and domain information |
|---|
Probab=80.25 E-value=33 Score=32.06 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhcCCcc
Q 040770 154 YIAARFMIGFCLATFVSCQYWTTIMFNGKI 183 (521)
Q Consensus 154 l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~ 183 (521)
--..|.+.|+-.-.+.++++++.-.||.++
T Consensus 22 ~~~lr~~~g~~~vlf~PGy~l~~~lfp~~~ 51 (287)
T PF07760_consen 22 IPPLRVILGFPFVLFLPGYALVAALFPRKH 51 (287)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHccCcC
Confidence 456788888877778899999999998553
|
The region in question is approximately 330 amino acid residues long. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 521 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 1e-19 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 72/434 (16%), Positives = 140/434 (32%), Gaps = 48/434 (11%)
Query: 69 WVSFFTCFISTFAA-------APLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAV 121
W F F A A +P + + ++ D+G A FS+ IMG+V
Sbjct: 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSV 85
Query: 122 CDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQG----YIAARFMIGFCLAT-FVSCQYWTT 176
D PR L+L+A + M FV A F+ G+ + C
Sbjct: 86 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 145
Query: 177 IMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHV 236
++ K G + V + PL+F L G F W A ++P + +
Sbjct: 146 HWWSQKERGG----IVSVWNCAHNVGGGIPPLLF----LLGMAWFNDWHAALYMPAFCAI 197
Query: 237 IMGILVLTLGQDLPD------------GNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVF 284
++ + + +D P +K Y + N W
Sbjct: 198 LVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYI 257
Query: 285 FVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGR 344
+ F + + ++ + + L + + A I G+ SD +
Sbjct: 258 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD---K 314
Query: 345 LF-GMRGRLWTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-- 401
+F G RG ++ W+ A + + ++ M++ G+
Sbjct: 315 VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP-VMLIGLHALE 373
Query: 402 FVSRRSLGILSGLTGAGGNFGSGLTQLAFF--------SNSKFSTATGISLMGALTWGSM 453
+++ G +G TG G G + A + F G S++ + +
Sbjct: 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433
Query: 454 LLPPSKDPQRSNEE 467
++ + ++ +E
Sbjct: 434 MIGEKRRHEQLLQE 447
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.54 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.36 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.35 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.33 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.32 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.19 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.16 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=320.69 Aligned_cols=355 Identities=16% Similarity=0.205 Sum_probs=291.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+.+++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34566777788888999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh----ccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 139 APAVFCMSF----VSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 139 ~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+++.+++++ ++|++.++++|+++|++.+. .+...+++.|++|+++|++++++.+.+.++|..+++.+++.+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 99999999999999999996 7788999999999999999999999999999988887776655433
Q ss_pred HHhCCCCCCC-chHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCC-----------Cccccchhh-HHhhhchhH
Q 040770 214 KLAGATPFTA-WRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGN-----------VNKDKFSKV-FWYGIKNYR 280 (521)
Q Consensus 214 ~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~ 280 (521)
+ ||+.|++.+++.++..++.++..|+.|+..+....++.. +++....+. .+..+++|.
T Consensus 183 ---------g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
T 1pw4_A 183 ---------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL 253 (451)
T ss_dssp ---------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHH
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHH
Confidence 7 999999999998888877777777766543211110000 001111111 467788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhh--hcccccchhHHHHHHH
Q 040770 281 TWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVA--GRLFGMRGRLWTLWIF 358 (521)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~ 358 (521)
++...+..++.......+..++|.|+++.+|+++.+++++.+...++.+++.++.+++.||+ ++|+ .+..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-------~~~~~ 326 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-------ATGVF 326 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-------hHHHH
Confidence 99999999888888888899999999988899999999999999999999999999999999 8764 33344
Q ss_pred HHHHH-HHHHHhhcc--CcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhH-HHHhhhhhH
Q 040770 359 QTLGG-VFCVWLGRA--ESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNF-GSGLTQLAF 430 (521)
Q Consensus 359 ~~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~-g~~i~~~l~ 430 (521)
..+.. ++++++... .+.+...+..++.|++.+...+....+..+ .|++.++++.|+.+...++ |..++|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 455555544 256667777778888877777777777664 5888999999999999999 999999873
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=302.95 Aligned_cols=352 Identities=12% Similarity=0.072 Sum_probs=283.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
++++..+..+++.++...++.....+.+|.+.+++|++..+.+++.+++.+++.++.+++|+++||+|||++++++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 34455667778888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 139 APAVFCM---SFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 139 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
+++.+++ +++++++.++++|+++|++.+. .+...+++.|++|+++|++++++.+.+.++|..+++.+++.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-- 179 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS-- 179 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT--
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 9999999 8899999999999999999996 778899999999999999999999999999998888766665511
Q ss_pred HhCCCC---------------------CCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHH
Q 040770 215 LAGATP---------------------FTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFW 273 (521)
Q Consensus 215 ~~~~~~---------------------~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 273 (521)
.. .. ..+||+.|++.+++.++..++.++. ..||+++++ ++++++++..+.++
T Consensus 180 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~---~~~~~~~~~~~~~~ 252 (438)
T 3o7q_A 180 -NV-PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--KFPALQSDN---HSDAKQGSFSASLS 252 (438)
T ss_dssp -SS-CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCTTTC---CCCSSTTSHHHHHH
T ss_pred -cc-ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--cCCcccccc---cccccccchhhhHH
Confidence 10 00 0019999988887766665554432 234433221 11122233346678
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhH
Q 040770 274 YGIKNYRTWVFFVLYGFSMGIELTTNNIISEF-MYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRL 352 (521)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 352 (521)
+.+++|.++...+..++..........++|.| +++.+|+++.+++.+.++..++.+++.++.+++.||++||+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------ 326 (438)
T 3o7q_A 253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK------ 326 (438)
T ss_dssp HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------
Confidence 88999999999999888888888888999999 88888999999999999999999999999999999999885
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhhhhhhhHHHHhhhhh
Q 040770 353 WTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+..+.++..+++++....++.+. .+.+++.+++.+...+..+++.. ..|++ ++.+.++.. ...+|+.++|.+
T Consensus 327 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 327 -VLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 555666666666666666666544 44457778888888888888744 55655 888888877 677999999987
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=288.07 Aligned_cols=385 Identities=11% Similarity=0.017 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhhcCC--------CccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDNLNL--------TKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLL 136 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 136 (521)
..+..++.++.++|...++..+|.+.++++. +..+.|++.+++.+|..+|++++|+++||+|||++++++.+
T Consensus 14 ~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~ 93 (491)
T 4gc0_A 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344566677788888888899999888743 23467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh------------------hccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhh
Q 040770 137 LSAPAVFCMS------------------FVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDM 197 (521)
Q Consensus 137 ~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 197 (521)
++.+++++++ +++|+++++++|+++|++.|+ .+.+..+++|+.|+++|++..++.+.+..+
T Consensus 94 l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 94 LFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhh
Confidence 9999999998 478999999999999999996 778999999999999999999999888777
Q ss_pred hhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCcccc----------
Q 040770 198 GGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDK---------- 267 (521)
Q Consensus 198 G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---------- 267 (521)
|..++..++..+...... .......||+.+.+..+..++..+. .+. .||+++....+.+.++.++
T Consensus 174 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDA-SWLNTDGWRYMFASECIPALLFLML-LYT---VPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHHHHTTSCT-TTTTTTHHHHHHHTTHHHHHHHHHH-GGG---SCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhcccccc-ccccchhhHHHhhhhhhhhhhhhhh-hhc---CCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 776665544333221110 0112236888887776665544333 333 3555433221111000000
Q ss_pred ----------------chhhHHhhhchhHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 040770 268 ----------------FSKVFWYGIKNYRTWVFFVLYGF-SMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIF 330 (521)
Q Consensus 268 ----------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~ 330 (521)
.........+.++.........+ .....+.+..+.+.+. +..+.+.........+.++..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4gc0_A 249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-KTLGASTDIALLQTIIVGVINLT 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-HhcCCCccchhhHHHHHHHHHHH
Confidence 00001112223333333333332 2333444444555444 44588888887888888899999
Q ss_pred hhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhh----ccCcHHHHHHHHHHHHhhhh-hcccccccccccc-c
Q 040770 331 ARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLG----RAESLPIAVVAMVLFSMGTQ-AACGATFGIVPFV-S 404 (521)
Q Consensus 331 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~ 404 (521)
+.++++++.||+|||+ ....+.....++++.+. ...+.....+.++++..++. ...+..+.+.+|+ |
T Consensus 328 ~~~~~~~l~dr~Grr~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRKP-------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHCSHH-------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhcCcc-------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 9999999999999985 33333333333332221 12223333333333333333 3335566777765 8
Q ss_pred ccchhhhhhhhhhhhhHHHHhhhhhHhccc-------chhHHH---HHHHHHHH--HHHHhhcCCCCCCC
Q 040770 405 RRSLGILSGLTGAGGNFGSGLTQLAFFSNS-------KFSTAT---GISLMGAL--TWGSMLLPPSKDPQ 462 (521)
Q Consensus 405 ~~~~~~~~g~~~~~~~~g~~i~~~l~~~~~-------~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~ 462 (521)
++.|+++.|+.+..+++++++++.+++... .+.... .+.+++++ ++.++++||+|+++
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 899999999999999999999887743221 111111 12222222 35567889999887
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=284.52 Aligned_cols=341 Identities=15% Similarity=0.047 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHH
Q 040770 66 HLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCM 145 (521)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 145 (521)
..+++..++..++...+.+.+|.+.+++|.+..+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34566777788888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCc
Q 040770 146 SFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAW 224 (521)
Q Consensus 146 ~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~w 224 (521)
+++++++.+++.|+++|++.+. .+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +|
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~ 153 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW---------NW 153 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH---------HH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc---------cH
Confidence 9999999999999999999996 7788999999999999999999999998888888887776655443 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040770 225 RIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISE 304 (521)
Q Consensus 225 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (521)
|+.|++.+++.++..++.++..||.|++ +.++ ++..+.+++.+++|+++...+..++.......+..+.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETRPV---DAPR------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCSTT---TCCC------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccCCC---Cccc------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888766655444444443322 1111 112244567788899999988888888888888899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc--cCcHHHHHHHH
Q 040770 305 FMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR--AESLPIAVVAM 382 (521)
Q Consensus 305 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 382 (521)
|+++.+|.++.+.+.+.....++.+++.++.+++.||.+++. ..........++..+.... .++.+...+..
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 999888999999999999999999999999999999988631 1111110111111111111 12455566677
Q ss_pred HHHHhhhhhcccccccccccccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 383 VLFSMGTQAACGATFGIVPFVSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 383 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
++.+++.+...+...++..+..|+.++++.|+.+...++|..++|.+.
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~ 346 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLS 346 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888887765348999999999999999999999873
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=276.17 Aligned_cols=356 Identities=11% Similarity=0.021 Sum_probs=252.9
Q ss_pred HHHHHHHHHHHHhhhhcchhc-hHHHHhh-----cCCCccchhhHHHHHHHHHHHHhhhhHhhhhh-cCCcHHHHHHHHH
Q 040770 65 FHLAWVSFFTCFISTFAAAPL-VPIIRDN-----LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDL-IGPRYGTSFLLLL 137 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~ 137 (521)
+..++...+...+..+..... .+.+.++ +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 334444555555554444333 3444455 99999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcc--hhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 138 SAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKI--LGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
.+++.+++++++|++.++++|+++|++.+. .+...++++|++|+++ |+.++++++...++|..+++.+++.+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 173 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA- 173 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 999999999999999999999999999996 7788999999999988 777888888888888888887776665533
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCC-hhhhhccCCCccccc-------------------------
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGN-LGALQKKGNVNKDKF------------------------- 268 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~------------------------- 268 (521)
+||+.|++.++..++..++.++..++..++. +.+.++...++.++.
T Consensus 174 --------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 245 (491)
T 4aps_A 174 --------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS 245 (491)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 9999999988876666555554433211110 000000000000000
Q ss_pred -----------------------hh----hHHhhhchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHH
Q 040770 269 -----------------------SK----VFWYGIKNYRTWVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIA 321 (521)
Q Consensus 269 -----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~ 321 (521)
++ ......+....+...+..++.+..+.....+++.|+.+..+.+....+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4aps_A 246 LPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ 325 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGT
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHh
Confidence 00 000111112244455555555666667777888899887788767777778
Q ss_pred HHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhcc---------CcHHHHHHHHHHHHhhhhhc
Q 040770 322 ATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA---------ESLPIAVVAMVLFSMGTQAA 392 (521)
Q Consensus 322 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~ 392 (521)
....++.+++.++.+++.||++||+.. ....+..+..+.+++++++... .+.+...+..++.+++.+..
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPS--SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999998532 1223334444444444443331 25566677788888888887
Q ss_pred cccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhHh
Q 040770 393 CGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAFF 431 (521)
Q Consensus 393 ~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~~ 431 (521)
.+..+.++.+ .|++.|+++.|+.+....+|..++|.+..
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~ 443 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT 443 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8878877664 58899999999999999999999999843
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=248.29 Aligned_cols=345 Identities=15% Similarity=0.097 Sum_probs=225.1
Q ss_pred HHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHH---H
Q 040770 68 AWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAV---F 143 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~ 143 (521)
+....+..++......+.+|. +++++|++..+.|++.+.+.+++.++++++|+++||+|||++++++.++++++. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 344444455555555566776 456699999999999999999999999999999999999999999888776532 2
Q ss_pred HHhhccCHH-HHHHHHHHHHhhhhh-hhhHHHHHHhhcCC--cchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCC
Q 040770 144 CMSFVSDAQ-GYIAARFMIGFCLAT-FVSCQYWTTIMFNG--KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGAT 219 (521)
Q Consensus 144 ~~~~~~~~~-~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~ 219 (521)
..++++... .++..+++.|++.+. .......+.++.++ ++++...+.......+|..+++.+++.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~------- 164 (417)
T 2cfq_A 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI------- 164 (417)
T ss_dssp HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 222322111 234456666665553 33333334444432 4567778888777888888887776665542
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHHHHHHh
Q 040770 220 PFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTN 299 (521)
Q Consensus 220 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (521)
+||+.|++.+++.++..+..++..|+.|+..+.+ ++.+.+.++...+..++.+++|+++...+..++....+..+.
T Consensus 165 ---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 165 ---NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp ---CSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSS-SSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHcCcccccccccc-cccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 8999999887764443333222222221111000 000111111123455677888998877766555555555566
Q ss_pred hhHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhccCcHH
Q 040770 300 NIISEFMYDRFNL---KLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRAESLP 376 (521)
Q Consensus 300 ~~~~~~l~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (521)
.++|.|+.+.++. +....++..++..++.+++.++.++++||++||+ .+..+..+.++.++++...++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~ 313 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-------ALLLAGTIMSVRIIGSSFATSAL 313 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-------HHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-------HHHHHHHHHHHHHHHHHHhccHH
Confidence 6788888765542 2445677777888888999999999999999885 45555555555555555566666
Q ss_pred HHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhh-hhhhhHHHHhhhhhH
Q 040770 377 IAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLT-GAGGNFGSGLTQLAF 430 (521)
Q Consensus 377 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~-~~~~~~g~~i~~~l~ 430 (521)
...+..++.+++.....+..+.+.++ .|++.||++.++. +....+|+.++|.+.
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 55555555666655555555666664 4889999999994 888889999999873
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=238.87 Aligned_cols=350 Identities=14% Similarity=0.078 Sum_probs=220.0
Q ss_pred HHHHHHHHHhhhhcchhchH-HHHhhcC------CCccchhhHHHHHHHHHHHHhhhhHhhhhhc-CCcHHHHHHHHHHH
Q 040770 68 AWVSFFTCFISTFAAAPLVP-IIRDNLN------LTKTDVGNAGVASVSGSIFSRLIMGAVCDLI-GPRYGTSFLLLLSA 139 (521)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~ 139 (521)
+++..++..+..+...+.++ .+.+++| ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34445555555444444444 4677899 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhcc-CHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHH---hhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 140 PAVFCMSFVS-DAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGC---AGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 140 ~~~~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
++.+++++++ +++.++++|++.|++.+. .+...+++.|++|+++|+++.+. .+...++|..+++.+++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-- 174 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-- 174 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 9999999999 999999999999999996 77889999999999999877666 7777788887777666655432
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCC--------Cccc-cc-h---------------
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGN--------VNKD-KF-S--------------- 269 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------~~~~-~~-~--------------- 269 (521)
.+||+.|++.+++.++..++.++..++.++.+++..+..+. +++. +. .
T Consensus 175 -------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (524)
T 2xut_A 175 -------FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAY 247 (524)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhh
Confidence 28999999998886665554444333222111100000000 0000 00 0
Q ss_pred ---------------------------hhH---H---------hhhchhHHHHHHHHHHHHHHHHHH---HhhhHHHHHH
Q 040770 270 ---------------------------KVF---W---------YGIKNYRTWVFFVLYGFSMGIELT---TNNIISEFMY 307 (521)
Q Consensus 270 ---------------------------~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ 307 (521)
..+ . .....++.+............... ....++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (524)
T 2xut_A 248 ALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN 327 (524)
T ss_dssp TGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHH
Confidence 000 0 001112222222211111111111 1122222222
Q ss_pred HhcCCCH-HHHHHHHHHHHHHHHhhhhhhHHHh----hhhhcccccchhHHHHHHHHHHHHHHHHHhhcc---------C
Q 040770 308 DRFNLKL-HTAGTIAATFGMANIFARPFGGYAS----DVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGRA---------E 373 (521)
Q Consensus 308 ~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 373 (521)
+ .+.+. ...+.+.....++.+++.++.+++. +|.++|.. ....+.++.++.+++++++... .
T Consensus 328 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
T 2xut_A 328 D-MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLT---ALRKMGAGIAITGLSWIVVGTIQLMMDGGSAL 403 (524)
T ss_dssp H-SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------C---CHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCC
T ss_pred h-cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 22221 1344544444455555555555543 33332211 1223445555555555555442 2
Q ss_pred cHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHHHhhhhhH
Q 040770 374 SLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGSGLTQLAF 430 (521)
Q Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~l~ 430 (521)
+.+...+..++.+++.+...+..+++..+ .|++.||+++|+.+....+|+.++|.+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888888888888888888764 5889999999999999999999999984
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-14 Score=138.37 Aligned_cols=172 Identities=13% Similarity=0.174 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhhhhcchhchHHHHhh-cCCCccchhhHHHHHHHHHHHHhhhhHhhhhhc--CCcHHHHHHHHHHH-H
Q 040770 65 FHLAWVSFFTCFISTFAAAPLVPIIRDN-LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLI--GPRYGTSFLLLLSA-P 140 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~ 140 (521)
+....+..++..+.........|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++.++.. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3334444555555555555667777666 899999999999999999999999999999999 99999988887776 7
Q ss_pred HHHHHhhc--cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhh-hhHHHHhHHHHHHHHHHHh
Q 040770 141 AVFCMSFV--SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDM-GGGVTQLLMPLVFEVIKLA 216 (521)
Q Consensus 141 ~~~~~~~~--~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~~~~~ 216 (521)
+.++..+. .+.+.+.+..++.|++.+. .+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--- 410 (451)
T 1pw4_A 334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--- 410 (451)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 77777776 4788888888999998875 667789999999999999999999998888 8888887666655532
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 040770 217 GATPFTAWRIAFFIPGWLHVIMGILVLTL 245 (521)
Q Consensus 217 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 245 (521)
||+..|++.+++.++..++.++.
T Consensus 411 ------g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 411 ------GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp ------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988877776666555
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.1e-12 Score=123.99 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=116.9
Q ss_pred ccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHHHHH
Q 040770 97 KTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQYWT 175 (521)
Q Consensus 97 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i 175 (521)
....+++.++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+. .+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888899999999999999999999999999988888888888998888888888888765 45667899
Q ss_pred HhhcCCcchhhHHHH-hhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q 040770 176 TIMFNGKILGLVNGC-AGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQ 247 (521)
Q Consensus 176 ~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 247 (521)
.|.+|++.|+.+.++ ++....+|..++|.+++.+.+.. +++..|.+.+++.++..++.+++.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999998 47777888888888777665532 7888999888887776665555544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=120.43 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=120.3
Q ss_pred HHHHHHhhhhcchhchHHH-Hhh-cCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc
Q 040770 71 SFFTCFISTFAAAPLVPII-RDN-LNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV 148 (521)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 148 (521)
..++............|.+ .++ +|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+.++.+++.++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T 3o7q_A 266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc
Confidence 3333333334444455555 544 59999999999999999999999999999999999999999999999999999988
Q ss_pred cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCC-chH
Q 040770 149 SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTA-WRI 226 (521)
Q Consensus 149 ~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~-wr~ 226 (521)
++.+.++.. ++.|++.+. .+....+..|.+|++ ++.+.++.. ...+|..+++.+.+.+.+.. | ++.
T Consensus 346 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~---------g~~~~ 413 (438)
T 3o7q_A 346 GGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---------GNIPT 413 (438)
T ss_dssp CHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---------TSSGG
T ss_pred CCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---------cchHH
Confidence 887765544 788888885 778888889999865 888888776 55688877777777666654 6 888
Q ss_pred HHHHHHHHHHH
Q 040770 227 AFFIPGWLHVI 237 (521)
Q Consensus 227 ~f~~~~~~~~~ 237 (521)
.|++.++..++
T Consensus 414 ~~~~~~~~~~~ 424 (438)
T 3o7q_A 414 AELIPALCFAV 424 (438)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876555333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7e-11 Score=119.09 Aligned_cols=181 Identities=12% Similarity=0.068 Sum_probs=128.6
Q ss_pred HHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhc
Q 040770 69 WVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFV 148 (521)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 148 (521)
....+.............+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 283 MLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 33334444444445556677888888888888777888888999999999999999999999999988888777665432
Q ss_pred ----cCHHHHHHHHHHH--HhhhhhhhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHHHhCCCCCC
Q 040770 149 ----SDAQGYIAARFMI--GFCLATFVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFT 222 (521)
Q Consensus 149 ----~~~~~l~~~r~l~--G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~ 222 (521)
.+.+..++.-++. +++.+..+....+.+|.+|.+.|+.++|+......+|..+++.+.|.+....... ...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~---~~~ 439 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV---AHF 439 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH---HHH
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh
Confidence 2222222322222 2333334567789999999999999999999999999988888877764422100 011
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 040770 223 AWRIAFFIPGWLHVIMGILVLTLGQDLPDG 252 (521)
Q Consensus 223 ~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 252 (521)
++.+.|++.++++++..++.++++||....
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 567788999999888888888886554433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-11 Score=121.95 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhh-hhcccccchhH
Q 040770 279 YRTWVFFVLYGFSMGIELTTNNIISEFMYDR-----FNLKLHTAGTIAATFGMANIFARPFGGYASDV-AGRLFGMRGRL 352 (521)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 352 (521)
+.++...+..++....++....+++.|+.+. +|.+..+.+++.+...++..++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 3566666677777777888888999999887 89999999999999999999999999999999 89986
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-cccc--hhhhhhhhhhhhhHHHHhhhhh
Q 040770 353 WTLWIFQTLGGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRS--LGILSGLTGAGGNFGSGLTQLA 429 (521)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~--~~~~~g~~~~~~~~g~~i~~~l 429 (521)
.+..+.++.+++.++....++.+.+++..++.|++.+...+...+++.+. |++. |+.+.++.+...++|..++|.+
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 87 -AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 77777777778888888888888888899999999998888888887754 7766 7888888999999999999987
Q ss_pred H
Q 040770 430 F 430 (521)
Q Consensus 430 ~ 430 (521)
.
T Consensus 166 ~ 166 (491)
T 4aps_A 166 V 166 (491)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-10 Score=115.78 Aligned_cols=144 Identities=16% Similarity=0.114 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhhhhhhHHHhhhh-hcccccchh
Q 040770 279 YRTWVFFVLYGFSMGIELTTNNIISEFMYDRFN------LKLHTAGTIAATFGMANIFARPFGGYASDVA-GRLFGMRGR 351 (521)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~ 351 (521)
+.++.+.+..++....++....+++.|+.+.+| +++.+.+++.+...++..++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 455666677777777777888899999998889 9999999999999999999999999999999 9885
Q ss_pred HHHHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhh---hhhhhhHHHHhh
Q 040770 352 LWTLWIFQTLGGVFCVWLGRAE-SLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGL---TGAGGNFGSGLT 426 (521)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~---~~~~~~~g~~i~ 426 (521)
.+.++.++.+++.++....+ +.+.+++..++.|++.+...+...+++.+ .|++.|+.+.++ .+...++|..++
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 87 --TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777 88888888899999998888888888775 488888766666 888888999999
Q ss_pred hhh
Q 040770 427 QLA 429 (521)
Q Consensus 427 ~~l 429 (521)
|.+
T Consensus 165 ~~~ 167 (524)
T 2xut_A 165 SLS 167 (524)
T ss_dssp HHT
T ss_pred HHH
Confidence 987
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-10 Score=109.35 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHH
Q 040770 283 VFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLG 362 (521)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 362 (521)
.+++..++.......+...+|.+. +.+|.++.+.+++.+...++..++.++.|+++||+|||+ .+..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~ 75 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP-------VILVGMSIF 75 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hHHHHHHHH
Confidence 344444444555555555666654 557999999999999999999999999999999999987 444555666
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhhhhhcccccccccccc-cccchhhhhhhhhhhhhHHHHhhhhhH-hcccchhHHH
Q 040770 363 GVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVPFV-SRRSLGILSGLTGAGGNFGSGLTQLAF-FSNSKFSTAT 440 (521)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~l~-~~~~~~~~~~ 440 (521)
.++.++....++.+.+++..++.|++.+...+...+++.+. |+++|+++.++.+....+|..++|.+. ...+.+++..
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 155 (375)
T 2gfp_A 76 MLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHH
Confidence 66666666667888888888899999988888888887755 789999999999999999999999984 3334445555
Q ss_pred HHHHHHHH
Q 040770 441 GISLMGAL 448 (521)
Q Consensus 441 ~~~~~~~~ 448 (521)
.+.+.+++
T Consensus 156 ~~~~~~~~ 163 (375)
T 2gfp_A 156 CYLFLLVL 163 (375)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 521 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-08 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 43/397 (10%), Positives = 91/397 (22%), Gaps = 12/397 (3%)
Query: 63 RTFHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAV 121
F + + FF F A P PI + D +++K+D G A S+ + + G +
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66
Query: 122 CDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLATFVSCQYWTTIMFNG 181
D +G R +++ + ++ +
Sbjct: 67 SDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVE 126
Query: 182 KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGIL 241
+ V+ + + L ++ + + ++
Sbjct: 127 AFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186
Query: 242 VLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGIELTTNNI 301
T + ++F + + + +
Sbjct: 187 AKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQ----- 241
Query: 302 ISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTL 361
+ F T FG A + G L + T+
Sbjct: 242 ---QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298
Query: 362 GGVFCVWLGRAESLPIAVVAMVLFSMGTQAACGATFGIVP--FVSRRSLGILSGLTGAGG 419
V + A S V+ L F + F R S I
Sbjct: 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358
Query: 420 NFGSGLTQLAF-FSNSKFSTATGISLMGALTWGSMLL 455
+ ++G + G L+
Sbjct: 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.53 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.37 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-37 Score=304.77 Aligned_cols=358 Identities=17% Similarity=0.203 Sum_probs=284.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhcchhchHHHHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHH
Q 040770 59 KPHMRTFHLAWVSFFTCFISTFAAAPLVPIIRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLS 138 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 138 (521)
+.+|..+..++++++..++++..++.+.|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 45677788888888999999888888888775 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----cCHHHHHHHHHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040770 139 APAVFCMSFV----SDAQGYIAARFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDMGGGVTQLLMPLVFEVI 213 (521)
Q Consensus 139 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 213 (521)
+++.++++++ ++++.+++.|++.|++.+. .+....+++|++|+++|++++++.+.+..+|..+++.++..+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999998876 4788999999999999996 7889999999999999999999999888888888877666554432
Q ss_pred HHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccC------------CCccccchhhHHhhhchhHH
Q 040770 214 KLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKG------------NVNKDKFSKVFWYGIKNYRT 281 (521)
Q Consensus 214 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 281 (521)
.+||+.|++.+++.++..++.+++.++.|++......++. +++........+..++++.+
T Consensus 180 --------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (447)
T d1pw4a_ 180 --------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 251 (447)
T ss_dssp --------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred --------hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchH
Confidence 2899999999999998888888888887765322111100 01111112345667889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHH
Q 040770 282 WVFFVLYGFSMGIELTTNNIISEFMYDRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTL 361 (521)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (521)
+......++.....+....+.+.|+.+.++++..+.+....+..++.+++.++.|++.||++|+. +.........+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~ 327 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN----RGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC----HHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc----cccccchhHHH
Confidence 99999888888888889999999999999999999999999999999999999999999999875 11222222222
Q ss_pred HHHHHHHhhc--cCcHHHHHHHHHHHHhhhhhccccccccccc-ccccchhhhhhhhhhhhhHHH-Hhhhhh
Q 040770 362 GGVFCVWLGR--AESLPIAVVAMVLFSMGTQAACGATFGIVPF-VSRRSLGILSGLTGAGGNFGS-GLTQLA 429 (521)
Q Consensus 362 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~-~i~~~l 429 (521)
..+..++... ..+.+...++.++.|++.....+....+..+ .|++.+|++.|+.+..+++++ +++|.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~ 399 (447)
T d1pw4a_ 328 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 399 (447)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322 3356666777777887777777777777664 588999999999999888754 556765
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.8e-27 Score=232.36 Aligned_cols=362 Identities=14% Similarity=0.054 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHhhhhcchhchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHH
Q 040770 63 RTFHLAWVSFFTCFISTFAAAPLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPA 141 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 141 (521)
+.++.+.+.++..++......+.+|. +.+++|+|++++|++.+++.+++.++++++|+++||+|||++++++.++..++
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~ 86 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34555666777777777777788886 56779999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHH----HHHHHHHhhhhh-hhhHHHHHHhhcCC--cchhhHHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 040770 142 VFCMSFVSDAQGYI----AARFMIGFCLAT-FVSCQYWTTIMFNG--KILGLVNGCAGGWGDMGGGVTQLLMPLVFEVIK 214 (521)
Q Consensus 142 ~~~~~~~~~~~~l~----~~r~l~G~~~~~-~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 214 (521)
.++..+..+..... +.+.+.+.+.+. .........+..++ +++.+..+........+..+++.+++.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 164 (417)
T d1pv7a_ 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-- 164 (417)
T ss_dssp HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--
Confidence 99888877666543 444444444443 33333333333322 3445566666666677777777666665544
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCChhhhhccCCCccccchhhHHhhhchhHHHHHHHHHHHHHHH
Q 040770 215 LAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVNKDKFSKVFWYGIKNYRTWVFFVLYGFSMGI 294 (521)
Q Consensus 215 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
+|+..+........+..++.++..++.|+..+.+.+++..+++ ..........+++..+............
T Consensus 165 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T d1pv7a_ 165 --------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA-FSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCC-CCHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred --------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccc-ccccccccccccccccchhhhhHHHHHH
Confidence 6778887777777777777777766655544333222222222 1223333444444444444333333333
Q ss_pred HHHHhhhHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 040770 295 ELTTNNIISEFMY---DRFNLKLHTAGTIAATFGMANIFARPFGGYASDVAGRLFGMRGRLWTLWIFQTLGGVFCVWLGR 371 (521)
Q Consensus 295 ~~~~~~~~~~~l~---~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (521)
........+.+.. +..+.+....+.......++..++..+.+++.||.++|+ .+..+.++.++..+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-------ALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc-------chhhhHHHHHHhhhcccc
Confidence 3333233333322 222445667777788888999999999999999999875 667777777777888888
Q ss_pred cCcHHHHHHHHHHHHhhhhhcccccccccc-cccccchhhhhhhh-hhhhhHHHHhhhhhH-hcccchhHHHHH
Q 040770 372 AESLPIAVVAMVLFSMGTQAACGATFGIVP-FVSRRSLGILSGLT-GAGGNFGSGLTQLAF-FSNSKFSTATGI 442 (521)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~-~~~~~~g~~i~~~l~-~~~~~~~~~~~~ 442 (521)
.++.+..++..++.+++.+...+...++.. ..|++.|+++.|+. +....+|..++|.+. ...+.+++...+
T Consensus 309 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~ 382 (417)
T d1pv7a_ 309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 888888888899999999888888888876 45899999999985 455668999998873 344444443333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=5.8e-14 Score=135.30 Aligned_cols=146 Identities=11% Similarity=0.096 Sum_probs=127.0
Q ss_pred CCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhhhh-hhhHH
Q 040770 94 NLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAPAVFCMSFVSDAQGYIAARFMIGFCLAT-FVSCQ 172 (521)
Q Consensus 94 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~ 172 (521)
+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+. .+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34456677788888999999999999999999999999999999999999999999999999999999999986 77888
Q ss_pred HHHHhhcCCcchhhHHHHh-hhhhhhhhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q 040770 173 YWTTIMFNGKILGLVNGCA-GGWGDMGGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQD 248 (521)
Q Consensus 173 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 248 (521)
.++.|.+|+++|+++.++. +....+|..+++.+.+.+.+.. ||+..|++.+++.++..++.++++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---------g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 4556688888888777777665 99999999999988887777776554
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=4.7e-12 Score=123.47 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=111.4
Q ss_pred hchHH-HHhhcCCCccchhhHHHHHHHHHHHHhhhhHhhhhhcCCcHHHHHHHHHHHH---HHHHHh--hccCHHHHHHH
Q 040770 84 PLVPI-IRDNLNLTKTDVGNAGVASVSGSIFSRLIMGAVCDLIGPRYGTSFLLLLSAP---AVFCMS--FVSDAQGYIAA 157 (521)
Q Consensus 84 ~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~---~~~~~~--~~~~~~~l~~~ 157 (521)
...|. +.+.++.+..+.++..+...++..++.++.|++.||++||+......+...+ +.++.. ...+.+...++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
T d1pw4a_ 270 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349 (447)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred hhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33444 5566889999999999999999999999999999999987654443333222 222222 24678888888
Q ss_pred HHHHHhhhhh-hhhHHHHHHhhcCCcchhhHHHHhhhhhhh-hhHHHHhHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH
Q 040770 158 RFMIGFCLAT-FVSCQYWTTIMFNGKILGLVNGCAGGWGDM-GGGVTQLLMPLVFEVIKLAGATPFTAWRIAFFIPGWLH 235 (521)
Q Consensus 158 r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~~~~~~~~~~~~wr~~f~~~~~~~ 235 (521)
-++.|++.++ .+....++.|.+|++.|+.++|+.+....+ |..+++.+.+.+.+ ..||+..|++.++..
T Consensus 350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~---------~~g~~~~~~~~~~~~ 420 (447)
T d1pw4a_ 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---------FFGWDGGFMVMIGGS 420 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------SSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhChHHHHHHHHHHH
Confidence 8888988775 667788999999999999999998776655 34445554444433 238999999888877
Q ss_pred HHHHHHHHHh
Q 040770 236 VIMGILVLTL 245 (521)
Q Consensus 236 ~~~~~~~~~~ 245 (521)
++..++.+++
T Consensus 421 ~~~~~~~~~~ 430 (447)
T d1pw4a_ 421 ILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766665555
|