Citrus Sinensis ID: 040822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MSSESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLELKPRVGPWSCMDKIPSRF
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEccccEEEEEccEEcccccccccccccHHcccccEEEEccccccccccHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccccEEEEEEEEcccccccccccEEEEccEEEcccHHHHHcccccEEEEccccccccccHHHHcccccEcccHccccHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSSESLIENCMGHEIVGAVKevgsnvkcfevgdrvgvgpyvnscqdcnfasiAGVYVIVEVPKEVKFKTVNLIMEMRTIAgsivgggtqETKEMVEFCaengiypeieiipiqyVNGALerlenrdvKYRFVIDIGqhlelkprvgpwscmdkipsrf
Flexible Loop (DISEMBL)
MSSESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAgsivgggtQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDigqhlelkprvgpwscmdkipsrf
Low Complexity Region (SEG)
MSSESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGiypeieiipiqyVNGALERLENRDVKYRFVIDIGQHLELKPRVGPWSCMDKIPSRF
Disordered region (IsUnstruct)
******IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLELKPRVGPWSCM*******
Disordered Region (DISOPRED)
**SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTI*********QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLEL*PRVGPWSCMDKIPS**
Disordered Region (DISEMBL)
MSSESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLELKPRVGPWSCMDKIPSRF
Disordered Region (DISPRO)
****SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLELKPRVGPWSC**K*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLELKPRVGPWSCMDKIPSRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9CAI3	355	Probable cinnamyl alcohol	yes	no	0.556	0.247	0.539	2e-21
Q2R114	354	Putative cinnamyl alcohol	yes	no	0.525	0.234	0.523	6e-20
Q8H859	354	Probable cinnamyl alcohol	yes	no	0.525	0.234	0.488	1e-18
Q2KNL6	360	Geraniol dehydrogenase 1	N/A	no	0.556	0.244	0.467	4e-15
O65621	363	Probable cinnamyl alcohol	no	no	0.481	0.209	0.519	1e-14
Q9ZRF1	359	Probable mannitol dehydro	N/A	no	0.556	0.245	0.455	1e-14
P41637	357	Probable cinnamyl alcohol	N/A	no	0.474	0.210	0.473	2e-14
C0SPA5	349	Probable formaldehyde deh	yes	no	0.525	0.237	0.517	4e-14
Q6V4H0	360	8-hydroxygeraniol dehydro	N/A	no	0.544	0.238	0.420	1e-13
Q40976	357	Probable cinnamyl alcohol	N/A	no	0.474	0.210	0.460	1e-13

>sp|Q9CAI3|CADH1_ARATH Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 1/89 (1%)

Query: 52  IAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           IAG YV+V  P E+K    NL + MR +AGS+ GG T+ T++M++FCA + IYP IE+IP
Sbjct: 268 IAGTYVLVGFPSEIKISPANLNLGMRMLAGSVTGG-TKITQQMLDFCAAHKIYPNIEVIP 326

Query: 112 IQYVNGALERLENRDVKYRFVIDIGQHLE 140
           IQ +N ALER+  +D+KYRFVIDI   L+
Sbjct: 327 IQKINEALERVVKKDIKYRFVIDIKNSLK 355

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 5

>sp|Q2R114|CADH4_ORYSJ Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2

 Score = 96.7 bits (239), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 62/84 (73%), Gaps = 1/84 (1%)

Query: 52  IAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           + GV V++  P E+K    NL +  R++AGS+ GG T++ +EM+ FCA N +YP+IE+I 
Sbjct: 267 VGGVMVLLSFPSEIKVHPENLNLAARSLAGSVTGG-TKDIQEMINFCAANNVYPDIEMIK 325

Query: 112 IQYVNGALERLENRDVKYRFVIDI 135
           I YVN AL+RL NRDV++RFVIDI
Sbjct: 326 IDYVNEALQRLINRDVRFRFVIDI 349

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q8H859|CADH1_ORYSJ Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 52  IAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           + GV  ++  P E+K    NL +  R+++GS+ GG T++ +EM+ FCA N IYP+IE+I 
Sbjct: 267 VGGVMALLSFPSEIKVHPANLNLGGRSLSGSVTGG-TKDIQEMINFCAANKIYPDIEMIK 325

Query: 112 IQYVNGALERLENRDVKYRFVIDI 135
           I Y+N AL+RL +RDV++RFVIDI
Sbjct: 326 IDYINEALQRLVDRDVRFRFVIDI 349

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q2KNL6|GEDH1_OCIBA Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 63/92 (68%), Gaps = 4/92 (4%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  ++V +P K ++     LI   RTIAGS +GG  +ET+EM++F A+N I  ++E+IPI
Sbjct: 272 GKLIVVGLPDKPLQLPVFPLIQGRRTIAGSGIGG-LKETQEMIDFAAKNNIVADVEVIPI 330

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHLELKPR 144
            Y+N A++RL   DVKYRFVID+ +   LKP+
Sbjct: 331 DYINTAMDRLLKSDVKYRFVIDVEK--SLKPQ 360

Involved in the production of citral, a mixture of geranial and neral with a strong lemony scent. Reversibly oxidizes geraniol and nerol in equal efficiency. Also active, although at a lower efficiency, with cinnamyl alcohol.

Ocimum basilicum (taxid: 39350)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|O65621|CADH6_ARATH Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 63  KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERL 122
           K       +LI+  ++IAGS +GG  QET+EM++F AE+GI  EIEII + YVN A++RL
Sbjct: 283 KPFDISAFSLILGRKSIAGSGIGG-MQETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRL 341

Query: 123 ENRDVKYRFVIDIGQHL 139
              DV+YRFVIDI   L
Sbjct: 342 AKGDVRYRFVIDISNTL 358

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q9ZRF1|MTDH_FRAAN Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 2/90 (2%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  V+V  P K ++     L+M  + +AGS +GG  +ET+EM++F A + I  +IE+IPI
Sbjct: 270 GKLVMVGAPEKPLELPVFPLLMGRKMVAGSGIGG-MKETQEMIDFAARHNITADIEVIPI 328

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHLELK 142
            Y+N A+ERL   DV+YRFVIDIG  L+++
Sbjct: 329 DYLNTAMERLVKADVRYRFVIDIGNTLKVR 358

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P41637|CADH_PINTA Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 61  VPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALE 120
           VP+ + F T  LI+  R+IAGS +GG  +ET+E ++FCAE  +   IE++ + Y+N A+E
Sbjct: 277 VPEPLHFVTPPLILGRRSIAGSFIGG-MEETQETLDFCAEKKVSSMIEVVGLDYINTAME 335

Query: 121 RLENRDVKYRFVIDIG 136
           RLE  DV+YRFV+D+ 
Sbjct: 336 RLEKNDVRYRFVVDVA 351

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Pinus taeda (taxid: 3352)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|C0SPA5|ADHA_BACSU Probable formaldehyde dehydrogenase AdhA OS=Bacillus subtilis (strain 168) GN=adhA PE=2 SV=1

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 52  IAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEII 110
           I G  V V  P K   +   +LIM  R+IAGS+VGG  QET+EM++F AE+GI P+IE+I
Sbjct: 263 IDGTLVSVGAPAKPDTYSVFSLIMGRRSIAGSLVGG-IQETQEMLDFAAEHGIEPKIEVI 321

Query: 111 PIQYVNGALERLENRDVKYRFVIDI 135
               V+ A ER+   DV+YRFVIDI
Sbjct: 322 GADQVDEAYERILRSDVRYRFVIDI 346

Functions in the protection against aldehyde-stress.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6V4H0|10HGO_CATRO 8-hydroxygeraniol dehydrogenase OS=Catharanthus roseus GN=10HGO PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  ++V  P K ++  +  LI   + IAGS +GG  +ET+EM++F A++ + P++E++ +
Sbjct: 272 GKLILVGAPEKPLELPSFPLIAGRKIIAGSAIGG-LKETQEMIDFAAKHNVLPDVELVSM 330

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHLE 140
            YVN A+ERL   DVKYRFVID+   L+
Sbjct: 331 DYVNTAMERLLKADVKYRFVIDVANTLK 358

Dehydrogenase involved in the biosynthesis of oxogeranial from hydroxygeraniol, a precursor of the terpenoid indole alkaloids such as vinblastine and vincristine.

Catharanthus roseus (taxid: 4058)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 2

EC: 4

>sp|Q40976|CADH_PINRA Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 61  VPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALE 120
           VP+ + F T  LI+  R+IAGS +G   +ET+E ++FCAE  +   IE++ + Y+N A+E
Sbjct: 277 VPEPLHFVTPLLILGRRSIAGSFIGS-MEETQETLDFCAEKKVSSMIEVVGLDYINTAME 335

Query: 121 RLENRDVKYRFVIDIG 136
           RLE  DV+YRFV+D+ 
Sbjct: 336 RLEKNDVRYRFVVDVA 351

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Pinus radiata (taxid: 3347)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
116778920	356	unknown [Picea sitchensis]	0.544	0.241	0.609	1e-22
388502832	208	unknown [Lotus japonicus]	0.550	0.418	0.590	2e-22
297742485	355	unnamed protein product [Vitis vinifera]	0.550	0.245	0.602	3e-22
225426492	371	PREDICTED: probable cinnamyl alcohol deh	0.550	0.234	0.602	3e-22
224086669	354	predicted protein [Populus trichocarpa]	0.544	0.242	0.574	2e-21
449507216	355	PREDICTED: probable cinnamyl alcohol deh	0.601	0.267	0.529	2e-21
357446025	406	Cinnamyl alcohol dehydrogenase [Medicago	0.556	0.216	0.595	2e-21
255555851	358	alcohol dehydrogenase, putative [Ricinus	0.550	0.243	0.590	2e-21
357446027	446	Cinnamyl alcohol dehydrogenase [Medicago	0.556	0.197	0.595	4e-21
449456293	355	PREDICTED: probable cinnamyl alcohol deh	0.601	0.267	0.519	5e-21

>gi|116778920|gb|ABK21056.1| unknown [Picea sitchensis]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 53  AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           AGV+VIV  P E+K    NLI+ M++IAGS+ GG T++T+EM++FCA+  +YP+IE+IPI
Sbjct: 270 AGVFVIVGFPSEIKIHPANLIIGMKSIAGSVTGG-TKDTQEMLDFCAKERVYPDIEVIPI 328

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHL 139
           QYVN ALER+ N+DVKYRFVIDI   L
Sbjct: 329 QYVNEALERMINKDVKYRFVIDIENSL 355

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502832|gb|AFK39482.1| unknown [Lotus japonicus]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 53  AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           +GV V+V  P EVKF   NL + M++I+GSI GG T+ET++M++FCA N IYP IE+IP+
Sbjct: 121 SGVLVLVGFPSEVKFSPANLNLGMKSISGSITGG-TKETQDMIDFCAANRIYPNIEVIPV 179

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHLE 140
           QY N AL+R+ NRDVKYRFVIDI   L+
Sbjct: 180 QYANEALQRVINRDVKYRFVIDIENSLK 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742485|emb|CBI34634.3| unnamed protein product [Vitis vinifera]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 69/88 (78%), Gaps = 1/88 (1%)

Query: 53  AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           AGV V+V  P EVKF   +++M MRT++GS  GG T++T+EM++FCA +GI+PEIE+IPI
Sbjct: 269 AGVLVLVGFPSEVKFSPGSIVMGMRTVSGSATGG-TKDTQEMLDFCAAHGIHPEIEVIPI 327

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHLE 140
           QY N ALERL  +DVKYRFVIDI   L+
Sbjct: 328 QYANEALERLIKKDVKYRFVIDIENSLK 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426492|ref|XP_002277375.1| PREDICTED: probable cinnamyl alcohol dehydrogenase 1-like [Vitis vinifera]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 69/88 (78%), Gaps = 1/88 (1%)

Query: 53  AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           AGV V+V  P EVKF   +++M MRT++GS  GG T++T+EM++FCA +GI+PEIE+IPI
Sbjct: 285 AGVLVLVGFPSEVKFSPGSIVMGMRTVSGSATGG-TKDTQEMLDFCAAHGIHPEIEVIPI 343

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHLE 140
           QY N ALERL  +DVKYRFVIDI   L+
Sbjct: 344 QYANEALERLIKKDVKYRFVIDIENSLK 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086669|ref|XP_002307925.1| predicted protein [Populus trichocarpa] gi|222853901|gb|EEE91448.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 53  AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           AG+ V+V  P E+K   +NLI+ MRT+ GS+ GG T++T+EM++FC  + IYPE+E+IPI
Sbjct: 268 AGILVLVGAPSEIKLAPLNLILGMRTLTGSVTGG-TKQTQEMLDFCGAHKIYPEVEVIPI 326

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHL 139
           QY N ALERL  +DVKYRFVIDI   L
Sbjct: 327 QYANEALERLIKKDVKYRFVIDIENSL 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507216|ref|XP_004162965.1| PREDICTED: probable cinnamyl alcohol dehydrogenase 1-like [Cucumis sativus]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 73/102 (71%), Gaps = 7/102 (6%)

Query: 39  PYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFC 98
           PY+++ +        GV V+V  P +VKF   +LI+ MRTI+GS+ GG T+ T+EM++FC
Sbjct: 261 PYMSTLK------TGGVMVLVGFPSQVKFNPASLILGMRTISGSVTGG-TKLTQEMIDFC 313

Query: 99  AENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE 140
           A +GIYP IE+IPIQY N A+ER+  +DVKYRFVIDI   LE
Sbjct: 314 AAHGIYPNIEVIPIQYSNEAIERVMKKDVKYRFVIDIEGSLE 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446025|ref|XP_003593290.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula] gi|355482338|gb|AES63541.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 52  IAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           I+GV V+V  P EVKF   +L +  RT+AGS+ GG T+E +EMV+FCA NGI+P+IE+IP
Sbjct: 319 ISGVLVLVGFPSEVKFSPASLNLGSRTVAGSVTGG-TKEIQEMVDFCAANGIHPDIELIP 377

Query: 112 IQYVNGALERLENRDVKYRFVIDIGQHLE 140
           I Y N ALER+ N+DVKYRFVIDI   L+
Sbjct: 378 IGYSNEALERVVNKDVKYRFVIDIENSLK 406

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555851|ref|XP_002518961.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223541948|gb|EEF43494.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 53  AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           AGV V+V  P EVKF   +L + M+T++GSI GG TQ T+EM++FCA + IYP+IE++PI
Sbjct: 269 AGVLVLVGFPSEVKFSPASLNLGMKTVSGSITGG-TQVTQEMLDFCAAHKIYPKIELVPI 327

Query: 113 QYVNGALERLENRDVKYRFVIDIGQHLE 140
            Y N ALERL  RDVKYRFVIDI   L 
Sbjct: 328 DYANAALERLVKRDVKYRFVIDIENSLS 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446027|ref|XP_003593291.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula] gi|355482339|gb|AES63542.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 52  IAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           I+GV V+V  P EVKF   +L +  RT+AGS+ GG T+E +EMV+FCA NGI+P+IE+IP
Sbjct: 359 ISGVLVLVGFPSEVKFSPASLNLGSRTVAGSVTGG-TKEIQEMVDFCAANGIHPDIELIP 417

Query: 112 IQYVNGALERLENRDVKYRFVIDIGQHLE 140
           I Y N ALER+ N+DVKYRFVIDI   L+
Sbjct: 418 IGYSNEALERVVNKDVKYRFVIDIENSLK 446

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456293|ref|XP_004145884.1| PREDICTED: probable cinnamyl alcohol dehydrogenase 1-like [Cucumis sativus]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 73/102 (71%), Gaps = 7/102 (6%)

Query: 39  PYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFC 98
           PY+++ +        GV V+V  P +VKF   +LI+ MRTI+GS+ GG T+ T+EM++FC
Sbjct: 261 PYMSTLK------TGGVMVLVGFPSQVKFNPASLILGMRTISGSVTGG-TKLTQEMIDFC 313

Query: 99  AENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE 140
           A +GIYP IE+IPIQY N A+ER+  +DVKYRFVIDI   L+
Sbjct: 314 AAHGIYPNIEVIPIQYSNEAIERVMKKDVKYRFVIDIEGSLK 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2030210	355	CAD1 "cinnamyl-alcohol dehydro	0.556	0.247	0.438	2.1e-26
TAIR|locus:2005528	359	ELI3-2 "elicitor-activated gen	0.575	0.253	0.354	8.4e-20
TAIR|locus:2120968	363	CAD6 "cinnamyl alcohol dehydro	0.481	0.209	0.428	1.2e-19
UNIPROTKB|Q0JA75	379	CAD7 "Cinnamyl alcohol dehydro	0.537	0.224	0.390	1.4e-19
UNIPROTKB|P0A4X0	346	adhC "NADP-dependent alcohol d	0.569	0.260	0.369	2.9e-19
UNIPROTKB|P75691	349	yahK "aldehyde reductase, NADP	0.398	0.180	0.515	3.6e-19
TAIR|locus:2124311	357	CAD5 "cinnamyl alcohol dehydro	0.474	0.210	0.415	3.6e-19
TAIR|locus:2052516	376	CAD2 "cinnamyl alcohol dehydro	0.550	0.231	0.337	4e-19
TAIR|locus:2005527	357	ELI3-1 "elicitor-activated gen	0.563	0.249	0.362	4.2e-19
TAIR|locus:2136278	360	CAD9 "cinnamyl alcohol dehydro	0.550	0.241	0.337	1.4e-18

TAIR|locus:2030210 CAD1 "cinnamyl-alcohol dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
 Identities = 39/89 (43%), Positives = 55/89 (61%)

Query:    52 IAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXX 111
             IAG YV+V  P E+K    NL + MR +AGS+ GG T+ T++M++FCA +          
Sbjct:   268 IAGTYVLVGFPSEIKISPANLNLGMRMLAGSVTGG-TKITQQMLDFCAAHKIYPNIEVIP 326

Query:   112 XXXVNGALERLENRDVKYRFVIDIGQHLE 140
                +N ALER+  +D+KYRFVIDI   L+
Sbjct:   327 IQKINEALERVVKKDIKYRFVIDIKNSLK 355

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IEP;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2005528 ELI3-2 "elicitor-activated gene 3-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
 Identities = 33/93 (35%), Positives = 52/93 (55%)

Query:    54 GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXX 112
             G  V+V  P K ++   + LI E + + GS++GG  +ET+EM++   ++           
Sbjct:   268 GKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGG-IKETQEMIDMAGKHNITADIELISA 326

Query:   113 XXVNGALERLENRDVKYRFVIDIGQHLELKPRV 145
               VN A+ERLE  DV+YRFVID+   L+  P +
Sbjct:   327 DYVNTAMERLEKADVRYRFVIDVANTLKPNPNL 359

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046029 "mannitol dehydrogenase activity" evidence=IDA

GO:0047681 "aryl-alcohol dehydrogenase (NADP+) activity" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2120968 CAD6 "cinnamyl alcohol dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 33/77 (42%), Positives = 45/77 (58%)

Query:    63 KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXXXXVNGALERL 122
             K       +LI+  ++IAGS +GG  QET+EM++F AE+G            VN A++RL
Sbjct:   283 KPFDISAFSLILGRKSIAGSGIGG-MQETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRL 341

Query:   123 ENRDVKYRFVIDIGQHL 139
                DV+YRFVIDI   L
Sbjct:   342 AKGDVRYRFVIDISNTL 358

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IEP

UNIPROTKB|Q0JA75 CAD7 "Cinnamyl alcohol dehydrogenase 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 147 (56.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 34/87 (39%), Positives = 50/87 (57%)

Query:    54 GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXX 112
             G  ++V +P K ++  T  L+   + +AGS +G    ET+EM++F AE+G          
Sbjct:   291 GKMILVGLPEKPLQIPTFALVGGGKILAGSCMGS-ISETQEMIDFAAEHGVAADIELIGA 349

Query:   113 XXVNGALERLENRDVKYRFVIDIGQHL 139
               VN A+ERL   DV+YRFV+DIG  L
Sbjct:   350 DEVNTAMERLAKGDVRYRFVVDIGNTL 376

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

UNIPROTKB|P0A4X0 adhC "NADP-dependent alcohol dehydrogenase C" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 138 (53.6 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 34/92 (36%), Positives = 49/92 (53%)

Query:    45 QDCNFASIAGVYVIVEVPKE-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGX 103
             Q  N   + G  V + +P+  +      L +  R++AGS +GG   ET+EM+ FCAE+G 
Sbjct:   253 QYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGG-IAETQEMLNFCAEHGV 311

Query:   104 XXXXXXXXXXXVNGALERLENRDVKYRFVIDI 135
                        +N A ER+   DV+YRFVIDI
Sbjct:   312 TPEIELIEPDYINDAYERVLASDVRYRFVIDI 343

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P75691 yahK "aldehyde reductase, NADPH-dependent" [Escherichia coli K-12 (taxid:83333)]

 Score = 156 (60.0 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:    71 NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXXXXVNGALERLENRDVKYR 130
             NLIM+ R IAGS++GG   ET+EM++FCAE+G            +N A ER+   DVKYR
Sbjct:   281 NLIMKRRAIAGSMIGG-IPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYR 339

Query:   131 FVID 134
             FVID
Sbjct:   340 FVID 343

GO:0048037 "cofactor binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008106 "alcohol dehydrogenase (NADP+) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2124311 CAD5 "cinnamyl alcohol dehydrogenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
 Identities = 32/77 (41%), Positives = 46/77 (59%)

Query:    65 VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXXXXVNGALERLEN 124
             ++F T  L++  + I GS +G   +ET+EM+EFC E G            VN A ERLE 
Sbjct:   281 LQFLTPLLMLGRKVITGSFIGS-MKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEK 339

Query:   125 RDVKYRFVIDI-GQHLE 140
              DV+YRFV+D+ G +L+
Sbjct:   340 NDVRYRFVVDVEGSNLD 356

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA;IMP

GO:0009809 "lignin biosynthetic process" evidence=IGI;IMP;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2052516 CAD2 "cinnamyl alcohol dehydrogenase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query:    52 IAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXX 110
             + G  V + +P K +     +L++  + + GS +GG  +ET+EM+EFCA++         
Sbjct:   266 VNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGG-MKETQEMLEFCAKHKIVSDIELI 324

Query:   111 XXXXVNGALERLENRDVKYRFVIDIGQHL 139
                 +N A++RL   DV+YRFVID+   L
Sbjct:   325 KMSDINSAMDRLAKSDVRYRFVIDVANSL 353

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IC

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

TAIR|locus:2005527 ELI3-1 "elicitor-activated gene 3-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
 Identities = 33/91 (36%), Positives = 48/91 (52%)

Query:    54 GVYVIVEVPKE-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXX 112
             G  V+V  P E ++     LI   + + GS+VGG  +ET+EMV+   ++           
Sbjct:   268 GKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGG-IKETQEMVDLAGKHNITADIELISA 326

Query:   113 XXVNGALERLENRDVKYRFVIDIGQHLELKP 143
               VN A+ERL   DVKYRFVID+   ++  P
Sbjct:   327 DYVNTAMERLAKADVKYRFVIDVANTMKPTP 357

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

TAIR|locus:2136278 CAD9 "cinnamyl alcohol dehydrogenase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query:    52 IAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXX 110
             + G  + + +P K ++     L++  + + GS VGG  +ET+EM++FCA++         
Sbjct:   270 VNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGG-MKETQEMLDFCAKHNITADIELI 328

Query:   111 XXXXVNGALERLENRDVKYRFVIDIGQHL 139
                 +N A+ERL   DV+YRFVID+   L
Sbjct:   329 KMDEINTAMERLAKSDVRYRFVIDVANSL 357

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	2e-27
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	2e-18
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-17
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-16
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	5e-15
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	4e-14
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-12
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-11
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	9e-11
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-10
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	5e-09
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	7e-09
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	1e-08
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	1e-08
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	1e-08
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	2e-08
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	6e-08
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	9e-08
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	2e-07
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-07
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-07
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-07
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	4e-07
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	1e-06
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	1e-06
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-06
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-06
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	1e-06
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	2e-06
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-06
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-06
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	3e-06
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	4e-06
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	5e-06
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	5e-06
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-05
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-05
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-05
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	3e-05
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	3e-05
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	4e-05
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	6e-05
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	9e-05
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-04
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	2e-04
smart00829	287	smart00829, PKS_ER, Enoylreductase	4e-04
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	4e-04
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	4e-04
cd05281	341	cd05281, TDH, Threonine dehydrogenase	5e-04
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	5e-04
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	5e-04
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	6e-04
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	6e-04
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	8e-04
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	0.001
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	0.001
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	0.002
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	0.002
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	0.002
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	0.002
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	0.002
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	0.002
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	0.003
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	0.003
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	0.004

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  104 bits (261), Expect = 2e-27
 Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  V+V  P + +      LI   +++AGS++GG  +ET+EM++F AE+GI P +E+IP+
Sbjct: 257 GTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGG-RKETQEMLDFAAEHGIKPWVEVIPM 315

Query: 113 QYVNGALERLENRDVKYRFVID 134
             +N ALERLE  DV+YRFV+D
Sbjct: 316 DGINEALERLEKGDVRYRFVLD 337

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 80.2 bits (198), Expect = 2e-18
 Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 61  VPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALE 120
           +   ++F T  L++  + I GS +G   +ET+EM+EFC E G+   IE++ + YVN A E
Sbjct: 277 INTPLQFVTPMLMLGRKVITGSFIGS-MKETEEMLEFCKEKGLTSMIEVVKMDYVNTAFE 335

Query: 121 RLENRDVKYRFVIDI-GQHLE 140
           RLE  DV+YRFV+D+ G +L+
Sbjct: 336 RLEKNDVRYRFVVDVAGSNLD 356

Length = 357

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 77.6 bits (192), Expect = 1e-17
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 54  GVYVIVEVPKEVKFKTV---NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EI 109
           G  V+V +P       +    LI++  +I GS+VG    + +E ++F AE  I PEI E 
Sbjct: 253 GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT-RADLEEALDFAAEGKIKPEILET 311

Query: 110 IPIQYVNGALERLENRDVKYRFVIDI 135
           IP+  +N A ER+E   V+ R VID+
Sbjct: 312 IPLDEINEAYERMEKGKVRGRAVIDM 337

Length = 339

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 72  LIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF 131
           L++  + + GS +GG  +ET+EM++FCA++ I  +IE+I +  +N A+ERL   DV+YRF
Sbjct: 291 LVLGRKLVGGSDIGG-IKETQEMLDFCAKHNITADIELIRMDEINTAMERLAKSDVRYRF 349

Query: 132 VIDIGQHL 139
           VID+   L
Sbjct: 350 VIDVANSL 357

Length = 360

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 70.2 bits (173), Expect = 5e-15
 Identities = 24/40 (60%), Positives = 26/40 (65%)

Query: 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
            GHEIVG V  VGS V  F+VGDRVGVG  V+SC  C  
Sbjct: 56 VPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQ 95

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 68.1 bits (166), Expect = 4e-14
 Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 52  IAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEII 110
           ++G  V + +P K +      L++  + + GS +GG  +ET+EM+EFCA++ I  +IE+I
Sbjct: 265 VSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGG-MKETQEMLEFCAKHKIVSDIELI 323

Query: 111 PIQYVNGALERLENRDVKYRFVIDIGQHL 139
            +  +N A++RL   DV+YRFVID+   L
Sbjct: 324 KMSDINSAMDRLAKSDVRYRFVIDVANSL 352

Length = 375

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 71  NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYR 130
            LIM+ ++IAGS  GG   + +E ++F AE  + P IE  P+   N A ER+E  DV++R
Sbjct: 269 PLIMKRQSIAGSTHGG-RADLQEALDFAAEGKVKPMIETFPLDQANEAYERMEKGDVRFR 327

Query: 131 FVI 133
           FV+
Sbjct: 328 FVL 330

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHEIVG V EVG  V   +VGDRVGVG  V SC +C +
Sbjct: 62 GHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEY 99

Length = 339

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 58.3 bits (142), Expect = 9e-11
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           GHEIVG V+ VG  V  F VGDRVGV    ++C +C +
Sbjct: 63  GHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRY 100

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
           GHEIVG V ++G NVK F+ GDRVGVG  V SC+ C
Sbjct: 71  GHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSC 106

Length = 360

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 23/36 (63%), Positives = 26/36 (72%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          GHEIVG V EVG+ V+  +VGDRVGVG  V SC  C
Sbjct: 58 GHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRC 93

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          GHE+VG +  VG  V  ++VGDRVGVG +   C  C
Sbjct: 59 GHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTC 94

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
           GHE+VG V EVGS+V  F VGD VGVG  V  C +C
Sbjct: 68  GHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGEC 103

Length = 357

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 54  GVYVIVEVPKEVKFKT--VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           G  V V +P          +L++   TI GS+VG   Q+ +E +EF A   + P I+++P
Sbjct: 259 GTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGT-RQDLQEALEFAARGKVKPHIQVVP 317

Query: 112 IQYVNGALERLENRDVKYRFVIDI 135
           ++ +N   E++E   +  R V+D 
Sbjct: 318 LEDLNEVFEKMEEGKIAGRVVVDF 341

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE  G V+EVG  V   +VGDRV V P +  C  C  
Sbjct: 34 LGHEGAGIVEEVGPGVTGLKVGDRVVVYPLI-PCGKCAA 71

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
           +GHE VG V EVG  V+  +VGDRV V P+  +C +C
Sbjct: 56 VLGHEFVGEVVEVGPEVRTLKVGDRV-VSPFTIACGEC 92

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHEI G + EVG  V  F+VGDRV V P+V  C +C++
Sbjct: 57 LGHEIAGEIVEVGDGVTGFKVGDRVFVAPHV-PCGECHY 94

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE VG V EVGS+VK  + GDRV V P +  C  C F
Sbjct: 57 ILGHEFVGEVVEVGSDVKRLKPGDRVSV-PCITFCGRCRF 95

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
           GHEIVG   +VG NV  F+ GDRVGVG  + SCQ C
Sbjct: 65  GHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSC 100

Length = 375

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 10  CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
            +GHE  G V EVGS V  F+VGDRV V P +  C  C  
Sbjct: 67  TLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTI-KCGTCGA 105

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE VG V+EVGS V   + GD V + P+  S   C F
Sbjct: 57 IGHEFVGVVEEVGSEVTSVKPGDFV-IAPFAISDGTCPF 94

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE +G V+EVG  V+  +VGDRV V P+  +C +C +
Sbjct: 58 LGHEFMGVVEEVGPEVRNLKVGDRV-VVPFTIACGECFY 95

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          GHE  G V EVG +V  + VGDRV V P+V  C  C
Sbjct: 59 GHEFAGVVVEVGEDVSRWRVGDRVTV-PFVLGCGTC 93

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          GHE  G V  VG  V   +VGDRVGV    ++C  C
Sbjct: 61 GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKC 96

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE  G V EVG  V   +VGDRV V P +  C  C  
Sbjct: 33 LGHEGAGVVVEVGPGVTGVKVGDRVVVLPNL-GCGTCEL 70

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE  G V+EVGS V    VGDRV V P +  C  C +
Sbjct: 56 LGHEFSGTVEEVGSGVDDLAVGDRVAVNPLL-PCGKCEY 93

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          +GHE+ G V EVG  V   +VGDRV V PY+ SC +C
Sbjct: 57 LGHELSGEVVEVGEGVAGLKVGDRVVVDPYI-SCGEC 92

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 64  EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP-EIEIIPIQYVNGALERL 122
           E       L +   TI GS VG   +E +E+V       + P  +   P+  VN AL+ L
Sbjct: 279 EATLPLPLLPLRALTIQGSYVGS-LEELRELVALAKAGKLKPIPLTERPLSDVNDALDDL 337

Query: 123 ENRDVKYRFVI 133
           +   V  R V+
Sbjct: 338 KAGKVVGRAVL 348

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN--SCQDC 47
           +GHEIVG V  VG +    +VGD+V V P++    C  C
Sbjct: 70  LGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVC 108

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHE  G V  VGS V  F+VGDRV V P +  C +C +
Sbjct: 57 GHEFAGVVVAVGSKVTGFKVGDRVAVDPNI-YCGECFY 93

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          +GHEI G V EVG+ V  F+VGDRV V P V  C  C
Sbjct: 60 LGHEIAGTVVEVGAGVTNFKVGDRVAV-PAVIPCGAC 95

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE VG V+EVGS V  F+VGDRV +   ++SC  C +
Sbjct: 58 LGHEGVGVVEEVGSAVTNFKVGDRVLISC-ISSCGTCGY 95

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYV--NSCQDC 47
          GHEIVG V+EVG  V+ F+ GDRV +  Y+    C+ C
Sbjct: 59 GHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYC 96

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGP--YVNSCQDC 47
          GHE+ G V+ VG  V     G RV V P     +C  C
Sbjct: 58 GHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYC 95

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 18/28 (64%), Positives = 21/28 (75%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVG 38
          +GHE VG V+EVGS VK F+ GDRV V 
Sbjct: 57 LGHEAVGVVEEVGSEVKDFKPGDRVIVP 84

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE  G V  VGS V   +VGDRV + P V  C+ C F
Sbjct: 57 VLGHESAGTVVAVGSGVTHLKVGDRVAIEPGV-PCRTCEF 95

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
          +GHE VG V EVGS V  F+VGDRV
Sbjct: 61 VGHEFVGEVVEVGSEVTGFKVGDRV 85

Length = 341

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          +GHE  G V+EVGS V   + GD V V P    C  C
Sbjct: 61 LGHENAGWVEEVGSGVDGLKEGDPVVVHPPW-GCGTC 96

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 27  KCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEV-PKEVKFKTVNLIMEMRTIAGSIVG 85
             F+    VG  P     Q        G  V+V +   ++     +LI     I GS  G
Sbjct: 235 VIFDF---VGTQPTFEDAQKA--VKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSF-G 288

Query: 86  GGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID 134
           G  ++  E+++  A+  + P++E  P+  +   LERL    VK R V+ 
Sbjct: 289 GTPEDLPEVLDLIAKGKLDPQVETRPLDEIPEVLERLHKGKVKGRVVLV 337

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE  G ++EVGS VK   VGDRV + P + SC  CN 
Sbjct: 77  IGHECAGIIEEVGSEVKHLVVGDRVALEPGI-SCWRCNL 114

Length = 364

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGV 37
          +GHE +G V+EVGS V+  +VGDRV V
Sbjct: 57 LGHEAMGEVEEVGSAVESLKVGDRVVV 83

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 54  GVYVIVEVPKE-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  +I+    E V    + LIM  ++I G    G   ++++ ++F A +G+ P +E  P+
Sbjct: 253 GKLLILGAAGEPVAVSPLQLIMGRKSIHGWP-SGTALDSEDTLKFSALHGVRPMVETFPL 311

Query: 113 QYVNGALERLENRDVKYRFVI 133
           +  N A +R+ +   ++R V+
Sbjct: 312 EKANEAYDRMMSGKARFRVVL 332

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE +G VKEVG  V   +VGDRV +  +   C  C +
Sbjct: 57 LGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEY 95

Length = 338

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRV 35
          GHE+VG V+EVG NVK F+ GDRV
Sbjct: 59 GHEVVGTVEEVGENVKGFKPGDRV 82

Length = 334

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHE  G V+ VG  V   + GD+V +  ++  C +C+ 
Sbjct: 60 GHEGAGIVESVGEGVTNLKPGDKV-IPLFIGQCGECSN 96

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV-GVGP 39
          +G E  G V  VG  V    VGDRV G+ P
Sbjct: 26 LGGECAGVVTRVGPGVTGLAVGDRVMGLAP 55

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          +GHE  G V+EVG  V   + GD V V  ++ +C  C
Sbjct: 57 LGHEGAGVVEEVGPGVTGVKPGDHV-VLSWIPACGTC 92

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
          +G E  G V  VGS V   +VGDRV
Sbjct: 31 LGLECSGIVTRVGSGVTGLKVGDRV 55

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
           GHE  G V EVG  V   +VGD V
Sbjct: 61 FGHEFAGEVVEVGEGVTRVKVGDYV 85

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
           GH++ G V  VG  V  F+VGD V
Sbjct: 63 PGHDVAGVVVAVGPGVTGFKVGDEV 87

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHE+VG V   G++   F VGDRVG+     +C  C +
Sbjct: 61 GHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRY 98

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          +GHE  G V+ VGS V   + GD V +     SC +C
Sbjct: 59 LGHEGAGVVEAVGSAVTGLKPGDHVVLSF--ASCGEC 93

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          GHE+ G V  +G  V+  +VGD V V  ++  C  C
Sbjct: 60 GHEVAGEVVGIGPGVEGIKVGDYVSVETHI-VCGKC 94

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
          +GHE  G + EVG +V+ ++VGDRV
Sbjct: 59 LGHEFSGTIVEVGPDVEGWKVGDRV 83

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHE  G V+ VG  V   + GD V +  +   C  C F
Sbjct: 60 GHEGAGIVEAVGEGVTSVKPGDHV-ILLFTPECGQCKF 96

Length = 366

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 6  LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA 50
            +  +GHE VG V EVG  V+ F+VGDRV V      C  C + 
Sbjct: 54 PGDIILGHEFVGEVVEVG-VVRGFKVGDRV-VVEPNIPCGHCRYC 96

Length = 350

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 54  GVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQ 113
           G YVIV      +  T +L+    ++ GS+ G    E  E+V       +  EI   P++
Sbjct: 260 GRYVIVGYGGHGRLPTSDLVPTEISVIGSLWGTRA-ELVEVVALAESGKVKVEITKFPLE 318

Query: 114 YVNGALERLENRDVKYRFVI 133
             N AL+RL    V  R V+
Sbjct: 319 DANEALDRLREGRVTGRAVL 338

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
          +G +  G V EVGS V  F+VGDRV
Sbjct: 58 LGCDFAGTVVEVGSGVTRFKVGDRV 82

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE  G V+ VG  V   + GD V +  Y   C +C F
Sbjct: 60 LGHEGAGIVESVGEGVTSVKPGDHV-IPLYTPECGECKF 97

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
           +GHE  G V EVG  V   EVGD V V  +V SC  C
Sbjct: 65  LGHEAAGVVVEVGEGVTDLEVGDHV-VLVFVPSCGHC 100

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGV--YVIVEVPKEVKF 67
           G E  G V  VGS V  F+VGDRV     V   +D  +A    V    +V +P  + F
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGGV--GRDGGYAEYVVVPADWLVPLPDGLSF 117

Length = 326

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 36.6 bits (86), Expect = 0.002
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVG 36
          G E  G V+ VG  V  F+VGDRV 
Sbjct: 59 GVEGAGVVEAVGPGVTGFKVGDRVA 83

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRV 35
          GHE  G V  +G  V+   VGDRV
Sbjct: 56 GHEGWGRVVALGPGVRGLAVGDRV 79

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASI 52
          +GHE  G +  VG  V    +G+RV V P V SC  C   SI
Sbjct: 57 IGHEFFGVIDAVGEGVDAARIGERVAVDP-VISCGHCYPCSI 97

Length = 339

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +G +  G V+ VG  V   + G RV + P + SC  C +
Sbjct: 61 LGSDGAGVVEAVGPGVTNVKPGQRVVIYPGI-SCGRCEY 98

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	99.93
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.92
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.82
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.77
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.75
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.67
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.65
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.64
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.63
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.61
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.61
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.57
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.51
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.5
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.49
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.43
PLN02827	378	Alcohol dehydrogenase-like	99.42
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.42
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.41
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.4
PLN02740	381	Alcohol dehydrogenase-like	99.39
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.39
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.38
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.35
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.34
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.34
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.3
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.29
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.29
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.28
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.28
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.28
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.25
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.23
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.23
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.21
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.21
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.19
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.16
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.13
PRK10083	339	putative oxidoreductase; Provisional	99.1
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.1
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.09
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.07
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.06
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.03
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.03
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.01
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.01
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	98.99
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	98.99
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	98.97
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	98.97
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	98.96
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	98.94
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	98.94
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	98.93
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	98.92
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	98.9
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	98.9
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	98.9
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	98.9
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	98.9
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	98.9
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	98.9
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	98.89
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	98.88
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	98.88
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	98.87
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	98.86
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	98.85
PRK13771	334	putative alcohol dehydrogenase; Provisional	98.84
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	98.84
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	98.83
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	98.83
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	98.82
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	98.82
PTZ00354	334	alcohol dehydrogenase; Provisional	98.82
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	98.81
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	98.81
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	98.8
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	98.8
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	98.79
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	98.77
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	98.76
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	98.76
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	98.75
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	98.73
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	98.71
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	98.71
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	98.7
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	98.68
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	98.67
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	98.65
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	98.64
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	98.64
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	98.63
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	98.62
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	98.6
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	98.58
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	98.58
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	98.57
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	98.56
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	98.56
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	98.56
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	98.51
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	98.49
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	98.47
cd08252	336	AL_MDR Arginate lyase and other MDR family members	98.46
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	98.46
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	98.45
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	98.41
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	98.4
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	98.38
PLN02702	364	L-idonate 5-dehydrogenase	98.32
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	98.31
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	98.27
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	98.22
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	98.2
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	98.19
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	97.95
COG2130	340	Putative NADP-dependent oxidoreductases [General f	97.72
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	97.7
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	97.47
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	97.4
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	97.39
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	97.33
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.23
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	97.11
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	97.09
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	97.05
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.01
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.81
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.56
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	96.48
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	96.47
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	96.44
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.43
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.38
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	96.3
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.29
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.27
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	96.26
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	96.24
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	96.23
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	96.14
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	96.1
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	96.06
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	96.05
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	96.05
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.02
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	96.02
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	96.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	95.96
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	95.87
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.84
PLN02702	364	L-idonate 5-dehydrogenase	95.83
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	95.46
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	95.25
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	95.16
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	95.12
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	95.0
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.99
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	94.85
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	94.75
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	94.49
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	94.47
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	94.32
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	94.29
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	94.25
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	93.77
PTZ00414	100	10 kDa heat shock protein; Provisional	93.77
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	93.46
PRK00364	95	groES co-chaperonin GroES; Reviewed	93.13
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	92.46
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	92.33
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	92.18
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	92.17
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	91.87
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	91.86
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	91.85
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	91.81
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	91.73
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	91.68
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	91.47
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	91.44
PRK14533	91	groES co-chaperonin GroES; Provisional	91.22
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	91.13
cd08252	336	AL_MDR Arginate lyase and other MDR family members	90.87
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	90.67
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	90.62
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	90.26
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.24
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.18
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	88.84
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	88.69
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	88.43
cd06919	111	Asp_decarbox Aspartate alpha-decarboxylase or L-as	87.41
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	87.24
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	86.88
TIGR00223	126	panD L-aspartate-alpha-decarboxylase. Members of t	86.84
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	86.4
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	86.39
PF02261	116	Asp_decarbox: Aspartate decarboxylase; InterPro: I	85.93
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	85.87
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	85.81
PRK05449	126	aspartate alpha-decarboxylase; Provisional	85.56
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	84.74
KOG1641	104	consensus Mitochondrial chaperonin [Posttranslatio	84.65
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	84.52
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	84.05
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	81.56
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	81.31
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	80.92
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	80.85

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=6.1e-25  Score=153.14  Aligned_cols=89  Identities=42%  Similarity=0.706  Sum_probs=84.4

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcc
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVK  128 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~  128 (158)
                      ++.+|+++++|+| .++.++...++.+.+.+.|+..| ++.+.+++++++.++.+++.+++.++++++++|+++++++++
T Consensus       269 lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG-~~ket~E~Ldf~a~~~ik~~IE~v~~~~v~~a~erm~kgdV~  347 (360)
T KOG0023|consen  269 LKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVG-SRKETQEALDFVARGLIKSPIELVKLSEVNEAYERMEKGDVR  347 (360)
T ss_pred             hhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccc-cHHHHHHHHHHHHcCCCcCceEEEehhHHHHHHHHHHhcCee
Confidence            6779999999999 78999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeCccc
Q 040822          129 YRFVIDIGQHL  139 (158)
Q Consensus       129 ~k~vl~~~~~~  139 (158)
                      +|.++++..++
T Consensus       348 yRfVvD~s~~~  358 (360)
T KOG0023|consen  348 YRFVVDVSKSL  358 (360)
T ss_pred             EEEEEEccccc
Confidence            99999887654

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.92  E-value=3.9e-24  Score=152.44  Aligned_cols=86  Identities=37%  Similarity=0.570  Sum_probs=77.9

Q ss_pred             cccCCEEEEEcCCC--c-eeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcC
Q 040822           50 ASIAGVYVIVEVPK--E-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENR  125 (158)
Q Consensus        50 ~~~~g~~v~~g~~~--~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~  125 (158)
                      ++.+|+++++|+|.  + .+.+...++.+++++.|+..+ ++.+.+++++|+.++++++.+ +.+++++++++|+.++++
T Consensus       249 l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g-~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g  327 (339)
T COG1064         249 LRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVG-TRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKG  327 (339)
T ss_pred             HhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecC-CHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcC
Confidence            56689999999983  3 446788899999999999999 999999999999999999999 699999999999999999


Q ss_pred             CcceeEEEEeC
Q 040822          126 DVKYRFVIDIG  136 (158)
Q Consensus       126 ~~~~k~vl~~~  136 (158)
                      +..||.+|++.
T Consensus       328 ~v~gR~Vi~~~  338 (339)
T COG1064         328 KVRGRAVIDMS  338 (339)
T ss_pred             CeeeEEEecCC
Confidence            99999988764

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.82  E-value=1.4e-19  Score=127.72  Aligned_cols=82  Identities=23%  Similarity=0.394  Sum_probs=65.8

Q ss_pred             cccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc--ce-EEEecccHHHHHHH
Q 040822           50 ASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP--EI-EIIPIQYVNGALER  121 (158)
Q Consensus        50 ~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~--~i-~v~~~~~~~~a~~~  121 (158)
                      +..+|+.+++|++   ..++++...+... ++++|++.|.  ...++..++++..+|+++.  ++ +.++|+|++++|+.
T Consensus       275 ~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~  353 (366)
T COG1062         275 THRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDL  353 (366)
T ss_pred             HhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHH
Confidence            3448899999988   4566777777766 9999999873  4678899999999999874  44 69999999999999


Q ss_pred             HHcCCcceeEEE
Q 040822          122 LENRDVKYRFVI  133 (158)
Q Consensus       122 ~~~~~~~~k~vl  133 (158)
                      +.+++.. |.++
T Consensus       354 m~~G~~I-R~Vi  364 (366)
T COG1062         354 MHEGKSI-RSVI  364 (366)
T ss_pred             HhCCcee-eEEe
Confidence            9888754 5554

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=2e-18  Score=121.04  Aligned_cols=84  Identities=15%  Similarity=0.250  Sum_probs=69.6

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR  125 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~  125 (158)
                      ++.+|.+++++.- ...+++......+++.+.|++.+ ....+..++++++.|++++   +.+.|+++++.+||+.+.++
T Consensus       263 ~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry-~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~  341 (354)
T KOG0024|consen  263 TRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRY-CNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHG  341 (354)
T ss_pred             hccCCEEEEeccCCCccccChhhhhhheeeeeeeeee-ccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhC
Confidence            4568888888876 78899999999999999999998 7778899999999999974   44789999999999999877


Q ss_pred             Cc-ceeEEEE
Q 040822          126 DV-KYRFVID  134 (158)
Q Consensus       126 ~~-~~k~vl~  134 (158)
                      .. .-|+++.
T Consensus       342 ~~~~iKv~i~  351 (354)
T KOG0024|consen  342 EEGVIKVIIT  351 (354)
T ss_pred             cCCceEEEEe
Confidence            63 2355443

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.75  E-value=3.1e-18  Score=116.52  Aligned_cols=146  Identities=17%  Similarity=0.161  Sum_probs=100.1

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceee--eehhh---------
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF--KTVNL---------   72 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~--~~~~~---------   72 (158)
                      |.++|+++|.|++|+|+++|++|++|++||||+-+..  .+.+.++...... -+...|..+.+  ..+.+         
T Consensus        61 ~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~--~g~yaee~~vP~~-kv~~vpe~i~~k~aaa~llq~lTAy~l  137 (336)
T KOG1197|consen   61 PAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNP--FGAYAEEVTVPSV-KVFKVPEAITLKEAAALLLQGLTAYML  137 (336)
T ss_pred             CCCCCcCCCcccceEEEEecCCccccccccEEEEecc--chhhheeccccce-eeccCCcccCHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999976653  3445555544322 22233422222  11111         


Q ss_pred             -------hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCc
Q 040822           73 -------IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPR  144 (158)
Q Consensus        73 -------~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g  144 (158)
                             -.+...+.+...| +.  ...+.||++..+...+.....-++.+.+.+.-..+-++++.. ++.+++. +|+|
T Consensus       138 l~e~y~vkpGhtVlvhaAAG-GV--Glll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~e-D~v~~V~kiTng  213 (336)
T KOG1197|consen  138 LFEAYNVKPGHTVLVHAAAG-GV--GLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTE-DYVDEVKKITNG  213 (336)
T ss_pred             HHHhcCCCCCCEEEEEeccc-cH--HHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccch-hHHHHHHhccCC
Confidence                   1244566666655 33  356789999998887666666666666655554544555554 7777888 9999


Q ss_pred             cCcCccccCCCC
Q 040822          145 VGPWSCMDKIPS  156 (158)
Q Consensus       145 ~g~d~v~d~~~~  156 (158)
                      +|||+++|++|.
T Consensus       214 KGVd~vyDsvG~  225 (336)
T KOG1197|consen  214 KGVDAVYDSVGK  225 (336)
T ss_pred             CCceeeeccccc
Confidence            999999999985

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.67  E-value=5.3e-17  Score=117.50  Aligned_cols=148  Identities=17%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC-CccccccccccccCCEEEEEcCCCceeeeehh------------
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP-YVNSCQDCNFASIAGVYVIVEVPKEVKFKTVN------------   71 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~-~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~------------   71 (158)
                      .++|+++|.|++|+|+++|++|++|++||||+... ....+++++|+....+.+. ..|+.+++..+.            
T Consensus        55 ~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~-~~P~~ls~~eAAal~~~~~TA~~~  133 (326)
T COG0604          55 RPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLV-PLPDGLSFEEAAALPLAGLTAWLA  133 (326)
T ss_pred             CCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHce-eCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999998764 1113578888877754444 245443332211            


Q ss_pred             hhh------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCc
Q 040822           72 LIM------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPR  144 (158)
Q Consensus        72 ~~~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g  144 (158)
                      +..      ++..++....   -.....++||++..+...++.+-+-++.+.+.+...+..++++.- ++.+.++ +|+|
T Consensus       134 l~~~~~l~~g~~VLV~gaa---GgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~-~~~~~v~~~t~g  209 (326)
T COG0604         134 LFDRAGLKPGETVLVHGAA---GGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREE-DFVEQVRELTGG  209 (326)
T ss_pred             HHHhcCCCCCCEEEEecCC---chHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcc-cHHHHHHHHcCC
Confidence            111      2223333322   334578999999998755554544444442211111111222221 3677787 9999


Q ss_pred             cCcCccccCCCCC
Q 040822          145 VGPWSCMDKIPSR  157 (158)
Q Consensus       145 ~g~d~v~d~~~~~  157 (158)
                      +|+|+|+|++|++
T Consensus       210 ~gvDvv~D~vG~~  222 (326)
T COG0604         210 KGVDVVLDTVGGD  222 (326)
T ss_pred             CCceEEEECCCHH
Confidence            9999999999864

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.65  E-value=7.4e-15  Score=108.49  Aligned_cols=84  Identities=39%  Similarity=0.774  Sum_probs=66.5

Q ss_pred             CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeE
Q 040822           53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF  131 (158)
Q Consensus        53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~  131 (158)
                      +|+++.++.+ .+..++...++.++.++.++..+ +..++.+++++++++.+++.++.|+++++++||+.++++...+|.
T Consensus       266 ~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gkv  344 (375)
T PLN02178        266 SGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIG-GMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRF  344 (375)
T ss_pred             CCEEEEEccCCCCCccCHHHHHhCCeEEEEeCcc-CHHHHHHHHHHHHhCCCcccEEEEeHHHHHHHHHHHHcCCCceEE
Confidence            4555555554 33444555566678888888877 778889999999999999877889999999999999998888999


Q ss_pred             EEEeCc
Q 040822          132 VIDIGQ  137 (158)
Q Consensus       132 vl~~~~  137 (158)
                      ++.+..
T Consensus       345 vi~~~~  350 (375)
T PLN02178        345 VIDVAN  350 (375)
T ss_pred             EEEecc
Confidence            888733

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.64  E-value=7.3e-15  Score=108.02  Aligned_cols=82  Identities=39%  Similarity=0.773  Sum_probs=62.3

Q ss_pred             CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeE
Q 040822           53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF  131 (158)
Q Consensus        53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~  131 (158)
                      +|+++.++.+ .+..++...++.++..+.++..+ +..++++++++++++.+++.+++|+++++++||+.+++++..+|.
T Consensus       271 ~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~li~~g~i~~~~~~~~l~~~~~A~~~~~~~~~~gkv  349 (360)
T PLN02586        271 NGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIG-GIKETQEMLDFCAKHNITADIELIRMDEINTAMERLAKSDVRYRF  349 (360)
T ss_pred             CcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcC-CHHHHHHHHHHHHhCCCCCcEEEEeHHHHHHHHHHHHcCCCcEEE
Confidence            4455555543 33334444455566677777767 777889999999999999877889999999999999998888899


Q ss_pred             EEEe
Q 040822          132 VIDI  135 (158)
Q Consensus       132 vl~~  135 (158)
                      ++.+
T Consensus       350 vi~~  353 (360)
T PLN02586        350 VIDV  353 (360)
T ss_pred             EEEc
Confidence            8876

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.63  E-value=4.4e-15  Score=104.03  Aligned_cols=80  Identities=23%  Similarity=0.327  Sum_probs=61.8

Q ss_pred             CCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822           53 AGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        53 ~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~  124 (158)
                      .|..+++|++   ..+++.+..++. ++++.|+..|+  +..+.+.+++.+.++.++.   +.+.+|++++++||+.+.+
T Consensus       287 wG~sv~iGv~~~~~~i~~~p~~l~~-GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~  365 (375)
T KOG0022|consen  287 WGKSVVIGVAAAGQEISTRPFQLVT-GRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHE  365 (375)
T ss_pred             CCeEEEEEecCCCcccccchhhhcc-ccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhC
Confidence            3889999987   456677777775 67888888773  4677888998888887763   4589999999999999988


Q ss_pred             CCcceeEEEE
Q 040822          125 RDVKYRFVID  134 (158)
Q Consensus       125 ~~~~~k~vl~  134 (158)
                      ++.. |.+|.
T Consensus       366 Gksi-R~vl~  374 (375)
T KOG0022|consen  366 GKSI-RCVLW  374 (375)
T ss_pred             CceE-EEEEe
Confidence            7754 66553

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.61  E-value=3.6e-14  Score=104.25  Aligned_cols=83  Identities=42%  Similarity=0.802  Sum_probs=66.0

Q ss_pred             CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeE
Q 040822           53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF  131 (158)
Q Consensus        53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~  131 (158)
                      +|+++.+|.+ .+.+++...++.++.++.+++.+ +..++++++++++++.+++.+++|+++++++|++.++++...+|.
T Consensus       268 ~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gk~  346 (357)
T PLN02514        268 DGKLILMGVINTPLQFVTPMLMLGRKVITGSFIG-SMKETEEMLEFCKEKGLTSMIEVVKMDYVNTAFERLEKNDVRYRF  346 (357)
T ss_pred             CCEEEEECCCCCCCcccHHHHhhCCcEEEEEecC-CHHHHHHHHHHHHhCCCcCcEEEEcHHHHHHHHHHHHcCCCceeE
Confidence            4555555554 33444555566778889998888 777889999999999998878899999999999999988888898


Q ss_pred             EEEeC
Q 040822          132 VIDIG  136 (158)
Q Consensus       132 vl~~~  136 (158)
                      ++.+.
T Consensus       347 v~~~~  351 (357)
T PLN02514        347 VVDVA  351 (357)
T ss_pred             EEEcc
Confidence            87764

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.61  E-value=3.1e-14  Score=103.49  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=65.9

Q ss_pred             cccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCc
Q 040822           50 ASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDV  127 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~  127 (158)
                      ++++|+++++|.+ . ...++...++.+++++.++... ...++.+++++++++.++++.++|+++++++|++.++++..
T Consensus       244 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~i~~i~~~~~l~~~~~A~~~~~~~~~  322 (329)
T TIGR02822       244 LDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSN-TRADAREFLELAAQHGVRVTTHTYPLSEADRALRDLKAGRF  322 (329)
T ss_pred             hCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecC-CHHHHHHHHHHHHhCCCeeEEEEEeHHHHHHHHHHHHcCCC
Confidence            3457778777764 2 2234555566778888888777 77778889999999999877789999999999999999988


Q ss_pred             ceeEEE
Q 040822          128 KYRFVI  133 (158)
Q Consensus       128 ~~k~vl  133 (158)
                      .+|.++
T Consensus       323 ~Gkvvl  328 (329)
T TIGR02822       323 DGAAVL  328 (329)
T ss_pred             ceEEEe
Confidence            888875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.57  E-value=6.7e-14  Score=100.91  Aligned_cols=83  Identities=11%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR  125 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~  125 (158)
                      ++++|+++++|.+ .+..++...++.++.++.++... ....+++++++++++.+++   +.++++++++++||+.+.++
T Consensus       221 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~  299 (308)
T TIGR01202       221 LAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEW-QPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSD  299 (308)
T ss_pred             hhcCcEEEEEeecCCCcccccchhhhcceEEEEeccc-chhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcC
Confidence            4567888888876 44556666677778888888776 6777899999999999875   45799999999999988766


Q ss_pred             CcceeEEE
Q 040822          126 DVKYRFVI  133 (158)
Q Consensus       126 ~~~~k~vl  133 (158)
                      ...+|.++
T Consensus       300 ~~~~Kv~~  307 (308)
T TIGR01202       300 PDCLKMIL  307 (308)
T ss_pred             cCceEEEe
Confidence            55567764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.51  E-value=4.9e-13  Score=98.74  Aligned_cols=81  Identities=17%  Similarity=0.348  Sum_probs=61.4

Q ss_pred             ccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822           51 SIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER  121 (158)
Q Consensus        51 ~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~  121 (158)
                      +++|+++.++.+ .  ...++...++.+++++.+++.+ +   ..++.+++++++++.+++   +.++|++++++++|+.
T Consensus       281 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~  359 (371)
T cd08281         281 RRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMG-SCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDR  359 (371)
T ss_pred             hcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecC-CCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHH
Confidence            456777777765 2  3455666677788899998765 4   456788999999999874   3478999999999999


Q ss_pred             HHcCCcceeEE
Q 040822          122 LENRDVKYRFV  132 (158)
Q Consensus       122 ~~~~~~~~k~v  132 (158)
                      ++++...++++
T Consensus       360 ~~~~~~~~~vi  370 (371)
T cd08281         360 LAAGEAVRQVI  370 (371)
T ss_pred             HhCCCceeeee
Confidence            98887765543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.50  E-value=6.7e-13  Score=97.03  Aligned_cols=83  Identities=22%  Similarity=0.221  Sum_probs=61.9

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR  125 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~  125 (158)
                      ++++|+++.+|.+ ....++...++.+++++.++...  ...+++++++++++.+++   +.+++++++++++++.+.++
T Consensus       256 l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~  333 (343)
T PRK09880        256 TRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRF--TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDK  333 (343)
T ss_pred             hhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeec--cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcC
Confidence            3446677777665 33455556666777888887654  356788999999999975   34789999999999999887


Q ss_pred             CcceeEEEE
Q 040822          126 DVKYRFVID  134 (158)
Q Consensus       126 ~~~~k~vl~  134 (158)
                      ...+|.++.
T Consensus       334 ~~~gKvvl~  342 (343)
T PRK09880        334 TQAAKVQLV  342 (343)
T ss_pred             CCceEEEEe
Confidence            767888764

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.49  E-value=1.2e-12  Score=95.45  Aligned_cols=81  Identities=20%  Similarity=0.196  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCCceeeee-hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCCcc
Q 040822           53 AGVYVIVEVPKEVKFKT-VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRDVK  128 (158)
Q Consensus        53 ~g~~v~~g~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~~~  128 (158)
                      +|+++.++.+....++. ..++.+++++.+++.+ +...+++++++++++.+++   +.+++++++++++++.++++. .
T Consensus       255 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~  332 (339)
T cd08239         255 WGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYF-SVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-S  332 (339)
T ss_pred             CCEEEEEcCCCCcccCcHHHHHhCCCEEEEEecC-CHHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-c
Confidence            45555555441112222 2455677888888877 7778899999999999864   447899999999999988765 6


Q ss_pred             eeEEEEe
Q 040822          129 YRFVIDI  135 (158)
Q Consensus       129 ~k~vl~~  135 (158)
                      +|.++.|
T Consensus       333 gKvvi~~  339 (339)
T cd08239         333 GKVVFVF  339 (339)
T ss_pred             eEEEEeC
Confidence            8887653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.43  E-value=5.4e-12  Score=92.36  Aligned_cols=85  Identities=14%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             cccCCEEEEEcCC-Cceeee---ehhhhhccceeEEeeecCC-----HHHHHHHHHHHHhCCcc--c-ceEEEecccHHH
Q 040822           50 ASIAGVYVIVEVP-KEVKFK---TVNLIMEMRTIAGSIVGGG-----TQETKEMVEFCAENGIY--P-EIEIIPIQYVNG  117 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~---~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~  117 (158)
                      ++++|+++++|.+ ....++   ...++.++.++.++..+ .     ..++++++++++++.++  + +.++++++++++
T Consensus       250 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~  328 (347)
T PRK10309        250 AGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMN-YSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQ  328 (347)
T ss_pred             hhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEecc-ccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHH
Confidence            3446777777755 332222   12456678888887654 2     35678899999999885  3 457899999999


Q ss_pred             HHHHHHcCCcceeEEEEe
Q 040822          118 ALERLENRDVKYRFVIDI  135 (158)
Q Consensus       118 a~~~~~~~~~~~k~vl~~  135 (158)
                      |++.+.++...+|.++.+
T Consensus       329 A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        329 AVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             HHHHHhcCCcceEEEEeC
Confidence            999998887778987654

>PLN02827 Alcohol dehydrogenase-like

Probab=99.42  E-value=4.5e-12  Score=93.86  Aligned_cols=84  Identities=24%  Similarity=0.366  Sum_probs=61.4

Q ss_pred             ccC-CEEEEEcCC-Cceeeee-hhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822           51 SIA-GVYVIVEVP-KEVKFKT-VNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER  121 (158)
Q Consensus        51 ~~~-g~~v~~g~~-~~~~~~~-~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~  121 (158)
                      +++ |+++++|.+ ....+.. ..++.++.++.|+..+ .   ..++++++++++++.+++   +.++|++++++++++.
T Consensus       285 ~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~  363 (378)
T PLN02827        285 SDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFG-GWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFEL  363 (378)
T ss_pred             ccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecC-CCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHH
Confidence            345 777777776 3333322 3456678888887664 3   346778999999999986   4478999999999999


Q ss_pred             HHcCCcceeEEEEeC
Q 040822          122 LENRDVKYRFVIDIG  136 (158)
Q Consensus       122 ~~~~~~~~k~vl~~~  136 (158)
                      +++++. .|.++.+.
T Consensus       364 ~~~~~~-~k~vi~~~  377 (378)
T PLN02827        364 MREGKC-LRCVIHMP  377 (378)
T ss_pred             HHCCCc-eEEEEEec
Confidence            988776 58887664

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.42  E-value=7.7e-12  Score=91.95  Aligned_cols=83  Identities=20%  Similarity=0.316  Sum_probs=60.4

Q ss_pred             cccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822           50 ASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER  121 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~  121 (158)
                      ++.+|+++.+|.+ .  ...++...++.++.++.+++.+.  ....+++++++++++.+++   +.++|++++++++++.
T Consensus       266 ~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~  345 (358)
T TIGR03451       266 RDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDK  345 (358)
T ss_pred             hccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHH
Confidence            3557888888876 3  24455556677788888775430  2456788999999999875   4578999999999999


Q ss_pred             HHcCCcceeEEE
Q 040822          122 LENRDVKYRFVI  133 (158)
Q Consensus       122 ~~~~~~~~k~vl  133 (158)
                      +++++.. |.++
T Consensus       346 ~~~~~~~-k~~~  356 (358)
T TIGR03451       346 MHAGDVL-RSVV  356 (358)
T ss_pred             HhCCCcc-eeEE
Confidence            9877654 5554

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.41  E-value=4e-12  Score=92.94  Aligned_cols=84  Identities=17%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             ccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC-----Ccccce-EEEecc---cHHHHHH
Q 040822           51 SIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN-----GIYPEI-EIIPIQ---YVNGALE  120 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~-----~i~~~i-~v~~~~---~~~~a~~  120 (158)
                      +++|+++++|.+ .+..++...++.+++++.++..+ +..++++++++++++     .+++.+ +.|+++   +++++|+
T Consensus       247 ~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~  325 (341)
T cd08237         247 RPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRS-TREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFE  325 (341)
T ss_pred             cCCcEEEEEeecCCCcccCHHHHhhCceEEEEeccc-CHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHH
Confidence            345666666655 34445555667788888888877 777889999999988     355544 678986   4566666


Q ss_pred             HHHcCCcceeEEEEeC
Q 040822          121 RLENRDVKYRFVIDIG  136 (158)
Q Consensus       121 ~~~~~~~~~k~vl~~~  136 (158)
                      .+.++ ..+|.++.++
T Consensus       326 ~~~~~-~~gKvvi~~~  340 (341)
T cd08237         326 SDLTN-SWGKTVMEWE  340 (341)
T ss_pred             HHhhc-CcceEEEEee
Confidence            55443 5678887653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.40  E-value=5.1e-12  Score=92.61  Aligned_cols=83  Identities=20%  Similarity=0.285  Sum_probs=66.4

Q ss_pred             cccCCEEEEEcCC-Cce-eeeehhhhhccceeEEeee-cCCHHHHHHHHHHHHhCCccc--c-eEEEecccHHHHHHHHH
Q 040822           50 ASIAGVYVIVEVP-KEV-KFKTVNLIMEMRTIAGSIV-GGGTQETKEMVEFCAENGIYP--E-IEIIPIQYVNGALERLE  123 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~-~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~l~~~~~i~~--~-i~v~~~~~~~~a~~~~~  123 (158)
                      ++++|+++++|.+ ... .++...+..++.++.|+.. . ....++.+++++..+.+++  . .+.+++++++++|+.+.
T Consensus       259 ~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~-~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~  337 (350)
T COG1063         259 LRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPS-GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFA  337 (350)
T ss_pred             hcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCC-CcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHH
Confidence            5678999999988 443 6778888999999999965 5 5567899999999999985  3 47788999999999998


Q ss_pred             cCCc-ceeEEE
Q 040822          124 NRDV-KYRFVI  133 (158)
Q Consensus       124 ~~~~-~~k~vl  133 (158)
                      +... ..|.++
T Consensus       338 ~~~~~~~Kv~i  348 (350)
T COG1063         338 DRKEEAIKVVL  348 (350)
T ss_pred             hcCCCeEEEEe
Confidence            7543 335554

>PLN02740 Alcohol dehydrogenase-like

Probab=99.39  E-value=1.6e-11  Score=91.01  Aligned_cols=78  Identities=18%  Similarity=0.428  Sum_probs=53.5

Q ss_pred             CEEEEEcCC-Cc--eeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822           54 GVYVIVEVP-KE--VKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        54 g~~v~~g~~-~~--~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~  124 (158)
                      |+++++|.+ ..  +.++... +.++.++.++..+ +   ..++.++++++.++.+++   +.++|+++++++|++.+.+
T Consensus       294 G~~v~~G~~~~~~~~~~~~~~-~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~  371 (381)
T PLN02740        294 GLTVLLGIHPTPKMLPLHPME-LFDGRSITGSVFG-DFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLED  371 (381)
T ss_pred             CEEEEEccCCCCceecccHHH-HhcCCeEEEEecC-CCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHC
Confidence            667776655 22  2222222 2356788877665 4   356788999999998864   4479999999999999987


Q ss_pred             CCcceeEEEE
Q 040822          125 RDVKYRFVID  134 (158)
Q Consensus       125 ~~~~~k~vl~  134 (158)
                      +.. .|.+|.
T Consensus       372 ~~~-~k~~~~  380 (381)
T PLN02740        372 GKA-LRCLLH  380 (381)
T ss_pred             CCc-eeEEEe
Confidence            754 477654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.39  E-value=1.3e-11  Score=90.50  Aligned_cols=62  Identities=13%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             hhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc--ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           71 NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP--EIEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        71 ~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~--~i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      .++.++.++.+++.+ +...+++++++++++.+++  +++.++++++++||+.++++...+|.++
T Consensus       284 ~~~~~~~~~~g~~~~-~~~~~~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~k~~~  347 (349)
T TIGR03201       284 NLMAFHARALGNWGC-PPDRYPAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAHHHKLKRRAIL  347 (349)
T ss_pred             HHhhcccEEEEEecC-CHHHHHHHHHHHHcCCCCcccceEEecHHHHHHHHHHHHcCCccceEEe
Confidence            333445667777666 6667889999999999864  5678999999999999998887778765

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.38  E-value=1.7e-12  Score=96.52  Aligned_cols=44  Identities=34%  Similarity=0.586  Sum_probs=35.9

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF   49 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   49 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+
T Consensus        59 ~~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~-~Cg~C~~  102 (393)
T TIGR02819        59 APTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNI-ACGRCRN  102 (393)
T ss_pred             CCCCccccceeEEEEEEEcCccccccCCCEEEEeccc-CCCCChH
Confidence            4568999999999999999999999999999765433 4555543

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.35  E-value=2.3e-11  Score=88.24  Aligned_cols=61  Identities=11%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             hhhhccceeEEeeecCC------HHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEE
Q 040822           71 NLIMEMRTIAGSIVGGG------TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        71 ~~~~~~~~i~g~~~~~~------~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      .++.++.++.++... .      ...+.+++++++ +.+++.+ ++|+++++.++|+.+.++...||.++
T Consensus       256 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~  323 (324)
T cd08291         256 DLIFKNKSIEGFWLT-TWLQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLL  323 (324)
T ss_pred             HHhhcCcEEEEEEHH-HhhcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEe
Confidence            344456666666543 2      234566777777 7787755 78999999999999999888888864

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.34  E-value=5e-11  Score=86.81  Aligned_cols=62  Identities=27%  Similarity=0.560  Sum_probs=49.8

Q ss_pred             hhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           71 NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        71 ~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      .++.++.++.++..+ ....++.++++.+++.+++.++.++++++.++++.++++...+|+++
T Consensus       271 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~a~~~~~~~~~~gk~v~  332 (333)
T cd08296         271 QLIMGRKSIHGWPSG-TALDSEDTLKFSALHGVRPMVETFPLEKANEAYDRMMSGKARFRVVL  332 (333)
T ss_pred             HHhhcccEEEEeCcC-CHHHHHHHHHHHHhCCCCceEEEEEHHHHHHHHHHHHCCCCceeEEe
Confidence            344566677776666 66777888899888888876788999999999999998888888765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.34  E-value=4.2e-11  Score=83.43  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             cccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHH-----------HHHHHHHHHHhCCccc-ceEEEecccH
Q 040822           50 ASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQ-----------ETKEMVEFCAENGIYP-EIEIIPIQYV  115 (158)
Q Consensus        50 ~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~-----------~~~~~~~l~~~~~i~~-~i~v~~~~~~  115 (158)
                      +..+|.++.+|..  .++.++...++++.+.+.|.+.. .+.           .+.++.+|++.|.+.. .....++++.
T Consensus       253 L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt-~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~  331 (354)
T KOG0025|consen  253 LERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVT-RWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADH  331 (354)
T ss_pred             HhcCceEEEecCccCCCcccccchheeccceeeeeeee-ehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhh
Confidence            4558888888866  78899999999999999999986 322           2457788999999974 4578999998


Q ss_pred             HHHHHHHHcC-CcceeEEEEe
Q 040822          116 NGALERLENR-DVKYRFVIDI  135 (158)
Q Consensus       116 ~~a~~~~~~~-~~~~k~vl~~  135 (158)
                      ..+++..... ...+|.++.+
T Consensus       332 ~tald~~L~~~~~~~Kq~i~~  352 (354)
T KOG0025|consen  332 KTALDAALSKFGKSGKQIIVL  352 (354)
T ss_pred             hHHHHHHHHHhccCCceEEEe
Confidence            8888865433 3334555443

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.30  E-value=5.4e-11  Score=87.40  Aligned_cols=61  Identities=18%  Similarity=0.296  Sum_probs=44.7

Q ss_pred             hhhhccceeEEeeecCCHHHHHHHHHHHHhCC------ccc-ceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           71 NLIMEMRTIAGSIVGGGTQETKEMVEFCAENG------IYP-EIEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        71 ~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~------i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      .++.++.++.|+..+ +..+++++++++.++.      +++ +.+++++++++++++.++++.  .|.++.
T Consensus       287 ~~~~k~~~i~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~  354 (355)
T cd08230         287 DLVLGNKALVGSVNA-NKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIE  354 (355)
T ss_pred             hHhhcCcEEEEecCC-chhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEee
Confidence            345567778887766 6677888999888766      343 347899999999999876543  477664

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.29  E-value=3.3e-12  Score=78.55  Aligned_cols=50  Identities=38%  Similarity=0.674  Sum_probs=39.3

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+.++|.++|||++|+|+++|++|++|++||||+..... .|+.|.++..+
T Consensus        27 ~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~c~~~   76 (109)
T PF08240_consen   27 PPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNI-GCGECEYCLSG   76 (109)
T ss_dssp             STSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEE-ETSSSHHHHTT
T ss_pred             cCCCCCcccccceeeeeeeeccccccccccceeeeeccc-CccCchhhcCC
Confidence            567889999999999999999999999999999876554 46666665543

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.29  E-value=1.5e-10  Score=84.51  Aligned_cols=60  Identities=53%  Similarity=0.966  Sum_probs=49.8

Q ss_pred             hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           73 IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        73 ~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      +.++.++.++..+ ....++.+++++.++.+++.++.+++++++++++.++.+...+|.|+
T Consensus       277 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~  336 (337)
T cd05283         277 IFGRKSVAGSLIG-GRKETQEMLDFAAEHGIKPWVEVIPMDGINEALERLEKGDVRYRFVL  336 (337)
T ss_pred             hcCceEEEEeccc-CHHHHHHHHHHHHhCCCccceEEEEHHHHHHHHHHHHcCCCcceEee
Confidence            4456667776666 67778889999999998877789999999999999998888888775

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.28  E-value=7.7e-12  Score=92.32  Aligned_cols=46  Identities=33%  Similarity=0.538  Sum_probs=37.7

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+
T Consensus        53 ~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~C~~c~   98 (368)
T TIGR02818        53 GVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTA-ECGECKFCL   98 (368)
T ss_pred             CCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCC-CCCCChhhh
Confidence            3568999999999999999999999999999876543 566655554

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.28  E-value=4.6e-11  Score=85.07  Aligned_cols=41  Identities=32%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             cccccccEEEEEeCCCCC------CCCCCCEEEecCCccccccccccc
Q 040822           10 CMGHEIVGAVKEVGSNVK------CFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~------~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      ++|||++|+|+++|++|+      +|++||||...+.. .|+.|.+|+
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~-~cg~C~~C~   47 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTV-PCGRCFRCR   47 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCC-CCCCChhhh
Confidence            589999999999999999      89999999765543 466555544

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.28  E-value=1.5e-10  Score=84.92  Aligned_cols=80  Identities=23%  Similarity=0.388  Sum_probs=54.0

Q ss_pred             CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccH-HHHHHHHHcCCc
Q 040822           53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYV-NGALERLENRDV  127 (158)
Q Consensus        53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~-~~a~~~~~~~~~  127 (158)
                      +|+++.++.. .+..++...+..++.++.+...+ ....+++++++++++.+++   +.++++++++ ++|++.+.++..
T Consensus       265 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~  343 (351)
T cd08233         265 RGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICY-TREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKE  343 (351)
T ss_pred             CCEEEEEccCCCCCccCHHHHHhhCcEEEEEecc-CcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCC
Confidence            3344444433 22333333444566777777666 5677889999999999953   3468999996 789999888776


Q ss_pred             c-eeEEE
Q 040822          128 K-YRFVI  133 (158)
Q Consensus       128 ~-~k~vl  133 (158)
                      . +|.++
T Consensus       344 ~~~k~v~  350 (351)
T cd08233         344 QHVKILV  350 (351)
T ss_pred             CceEEEe
Confidence            4 77764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.25  E-value=2e-10  Score=84.78  Aligned_cols=77  Identities=26%  Similarity=0.439  Sum_probs=51.5

Q ss_pred             CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822           54 GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        54 g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~  124 (158)
                      |+++++|.+ .  .+.++...++ +++++.++..+ .   ..+++++++++.++.+++   +.+++++++++++++.+++
T Consensus       283 g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~  360 (369)
T cd08301         283 GVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFG-GYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLK  360 (369)
T ss_pred             CEEEEECcCCCCcccccCHHHHh-cCCeEEEEecC-CCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHC
Confidence            566666654 2  2223322333 56778777654 3   245778899999988764   3478999999999999987


Q ss_pred             CCcceeEEE
Q 040822          125 RDVKYRFVI  133 (158)
Q Consensus       125 ~~~~~k~vl  133 (158)
                      ++.. |.++
T Consensus       361 ~~~~-k~~~  368 (369)
T cd08301         361 GECL-RCIL  368 (369)
T ss_pred             CCce-eEEe
Confidence            7643 6553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.23  E-value=1.4e-11  Score=89.08  Aligned_cols=140  Identities=20%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeee--------eh----hh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFK--------TV----NL   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~--------~~----~~   72 (158)
                      +++|.++|+|++|+|+++|++|++|++||||++....  .++++++...... +..+|..+...        ..    .+
T Consensus        56 ~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~--g~~~~~~~~~~~~-~~~ip~~~~~~~aa~~~~~~~ta~~~~  132 (324)
T cd08292          56 PELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPVH--GTWAEYFVAPADG-LVPLPDGISDEVAAQLIAMPLSALMLL  132 (324)
T ss_pred             CCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccCC--CcceeEEEEchHH-eEECCCCCCHHHhhhccccHHHHHHHH
Confidence            4568899999999999999999999999999876421  2345555444221 22344221110        00    00


Q ss_pred             -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-c
Q 040822           73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-L  141 (158)
Q Consensus        73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~  141 (158)
                           ..+...++..  + +-...+.++++++..+++++......++.+. ++.   ...  ..+++     +.+.+. +
T Consensus       133 ~~~~~~~g~~vlI~g--~-~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~-~~~---~g~--~~~~~~~~~~~~~~i~~~  203 (324)
T cd08292         133 DFLGVKPGQWLIQNA--A-GGAVGKLVAMLAAARGINVINLVRRDAGVAE-LRA---LGI--GPVVSTEQPGWQDKVREA  203 (324)
T ss_pred             HhhCCCCCCEEEEcc--c-ccHHHHHHHHHHHHCCCeEEEEecCHHHHHH-HHh---cCC--CEEEcCCCchHHHHHHHH
Confidence                 0112222211  1 2344578899999999876444333333222 222   122  22222     233455 7


Q ss_pred             CCccCcCccccCCCC
Q 040822          142 KPRVGPWSCMDKIPS  156 (158)
Q Consensus       142 t~g~g~d~v~d~~~~  156 (158)
                      ++++|+|+|+|++++
T Consensus       204 ~~~~~~d~v~d~~g~  218 (324)
T cd08292         204 AGGAPISVALDSVGG  218 (324)
T ss_pred             hCCCCCcEEEECCCC
Confidence            899999999999876

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.23  E-value=4.5e-10  Score=82.86  Aligned_cols=77  Identities=27%  Similarity=0.474  Sum_probs=49.3

Q ss_pred             CEEEEEcCC--CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHHcC
Q 040822           54 GVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLENR  125 (158)
Q Consensus        54 g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~~~  125 (158)
                      |+++.++.+  ...+++...++. ++++.+++.+ +   ..++++++++++++.++  + +.+.|+++++++|++.++++
T Consensus       280 G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~  357 (365)
T cd08277         280 GVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFG-GFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSG  357 (365)
T ss_pred             CEEEEEcCCCccccccCHhHHhh-CCEEEeeecC-CCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCC
Confidence            455555543  122333333333 5677776655 3   34567889999988765  3 44789999999999998877


Q ss_pred             CcceeEEE
Q 040822          126 DVKYRFVI  133 (158)
Q Consensus       126 ~~~~k~vl  133 (158)
                      . ..|.++
T Consensus       358 ~-~~k~~i  364 (365)
T cd08277         358 E-CIRTVI  364 (365)
T ss_pred             C-CceEee
Confidence            6 346553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.21  E-value=5.5e-10  Score=83.65  Aligned_cols=51  Identities=16%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCCcceeEEEEeCcc
Q 040822           87 GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRDVKYRFVIDIGQH  138 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~  138 (158)
                      ...++++++++++++++++   +.+++++++++++++.+. ++..+|.++.+.+.
T Consensus       318 ~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~~~  371 (410)
T cd08238         318 NTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQKP  371 (410)
T ss_pred             CHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECCCC
Confidence            4455678999999999986   447899999999999998 66778998876443

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.21  E-value=3.5e-10  Score=82.96  Aligned_cols=85  Identities=15%  Similarity=0.107  Sum_probs=59.6

Q ss_pred             cCCEEEEEcCC--Ccee-----eeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccHHHH
Q 040822           52 IAGVYVIVEVP--KEVK-----FKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYVNGA  118 (158)
Q Consensus        52 ~~g~~v~~g~~--~~~~-----~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a  118 (158)
                      .+|+++.+|.+  ....     .+...++.+++++.++..+ ..     ..+++++++++++.+++.+ .+++++++++|
T Consensus       250 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A  328 (348)
T PLN03154        250 IHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQS-DYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAA  328 (348)
T ss_pred             cCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHH-HHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHH
Confidence            35566666544  1111     1333455566777776544 21     2356788999999999766 58999999999


Q ss_pred             HHHHHcCCcceeEEEEeCc
Q 040822          119 LERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl~~~~  137 (158)
                      ++.+++++..||.++.+.+
T Consensus       329 ~~~l~~g~~~GKvVl~~~~  347 (348)
T PLN03154        329 LVGLFSGKNVGKQVIRVAK  347 (348)
T ss_pred             HHHHHcCCCCceEEEEecC
Confidence            9999999999999988754

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.19  E-value=4.3e-11  Score=88.34  Aligned_cols=44  Identities=34%  Similarity=0.539  Sum_probs=36.3

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      .+|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        55 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~c   98 (368)
T cd08300          55 LFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTP-ECGECKFC   98 (368)
T ss_pred             CCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCC-CCCCChhh
Confidence            568999999999999999999999999999876433 45555544

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.16  E-value=1.5e-10  Score=84.85  Aligned_cols=33  Identities=39%  Similarity=0.477  Sum_probs=30.2

Q ss_pred             CCCccccccccEEEEEeCCCCC--CCCCCCEEEec
Q 040822            6 LIENCMGHEIVGAVKEVGSNVK--CFEVGDRVGVG   38 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~--~~~vGdrV~~~   38 (158)
                      +.|.++|+|++|+|+++|++|+  +|++||||++.
T Consensus        61 ~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~   95 (350)
T cd08256          61 KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISE   95 (350)
T ss_pred             CCCcccCcceeEEEEEeCCCcccCCCCCCCEEEEC
Confidence            4678999999999999999999  99999999874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.13  E-value=1.8e-09  Score=79.04  Aligned_cols=58  Identities=19%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             cceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           76 MRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      +.++.++... ....++++++++.++.+++. .+.+++++++++++.+..+...+|.+++
T Consensus       291 ~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~  349 (350)
T cd08274         291 DLTLFGSTLG-TREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLV  349 (350)
T ss_pred             ceEEEEeecC-CHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEe
Confidence            3344444444 45667788999999988764 4789999999999999877767777653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK10083 putative oxidoreductase; Provisional

Probab=99.10  E-value=4.1e-09  Score=76.87  Aligned_cols=48  Identities=15%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCC-cceeEEEEeC
Q 040822           89 QETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRD-VKYRFVIDIG  136 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~-~~~k~vl~~~  136 (158)
                      ..+++++++++++.+++   +.+.+++++++++++.++++. ..+|.++++.
T Consensus       287 ~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~  338 (339)
T PRK10083        287 NKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFA  338 (339)
T ss_pred             hhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecC
Confidence            44678899999998886   458899999999999987543 4578887664

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.10  E-value=4.3e-09  Score=76.73  Aligned_cols=58  Identities=29%  Similarity=0.379  Sum_probs=43.2

Q ss_pred             cceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           76 MRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      +.++.+.... ....++.++++++++.+++.++.+++++++++++.++++...+|.++.
T Consensus       282 ~~~~~~~~~~-~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~~  339 (340)
T cd05284         282 EISVIGSLWG-TRAELVEVVALAESGKVKVEITKFPLEDANEALDRLREGRVTGRAVLV  339 (340)
T ss_pred             ceEEEEEecc-cHHHHHHHHHHHHhCCCCcceEEEeHHHHHHHHHHHHcCCccceEEec
Confidence            3344443333 445567888999999888767889999999999999888777777653

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.09  E-value=1.5e-10  Score=84.59  Aligned_cols=137  Identities=13%  Similarity=0.027  Sum_probs=75.1

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCc-----ee-------eee---
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKE-----VK-------FKT---   69 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~-----~~-------~~~---   69 (158)
                      .++|.++|+|++|+|+++|++|++|++||||++..    ..+++|+....+.+ ..+|+.     ..       .+.   
T Consensus        66 ~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~----~~~ae~~~v~~~~~-~~iP~~~~~~~~~~~~a~~~~~~~ta  140 (345)
T cd08293          66 APWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN----WPWQTYAVLDGSSL-EKVDPQLVDGHLSYFLGAVGLPGLTA  140 (345)
T ss_pred             CCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC----CCceeEEEecHHHe-EEcCccccccchhHHhhhcCcHHHHH
Confidence            35678999999999999999999999999997642    13445544432211 223311     00       000   


Q ss_pred             -hhhh-----h-c--cceeEEeeecCCHHHHHHHHHHHHhCCc-ccceEEEecccHHHHHHHHHc-CCcceeEEEEe---
Q 040822           70 -VNLI-----M-E--MRTIAGSIVGGGTQETKEMVEFCAENGI-YPEIEIIPIQYVNGALERLEN-RDVKYRFVIDI---  135 (158)
Q Consensus        70 -~~~~-----~-~--~~~i~g~~~~~~~~~~~~~~~l~~~~~i-~~~i~v~~~~~~~~a~~~~~~-~~~~~k~vl~~---  135 (158)
                       ..+.     . +  +..++...   +-...+.++|+++..++ +++....+    ++..+.+++ ....  .+++.   
T Consensus       141 ~~al~~~~~~~~g~~~~VlI~ga---~g~vG~~aiqlAk~~G~~~Vi~~~~s----~~~~~~~~~~lGa~--~vi~~~~~  211 (345)
T cd08293         141 LIGIQEKGHITPGANQTMVVSGA---AGACGSLAGQIGRLLGCSRVVGICGS----DEKCQLLKSELGFD--AAINYKTD  211 (345)
T ss_pred             HHHHHHhccCCCCCCCEEEEECC---CcHHHHHHHHHHHHcCCCEEEEEcCC----HHHHHHHHHhcCCc--EEEECCCC
Confidence             0110     0 1  12222222   23445778999999887 44332222    222333322 2221  22332   


Q ss_pred             --Ccccc-cCCccCcCccccCCCC
Q 040822          136 --GQHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       136 --~~~~~-~t~g~g~d~v~d~~~~  156 (158)
                        .+.++ +++ +|+|+|+|++++
T Consensus       212 ~~~~~i~~~~~-~gvd~vid~~g~  234 (345)
T cd08293         212 NVAERLRELCP-EGVDVYFDNVGG  234 (345)
T ss_pred             CHHHHHHHHCC-CCceEEEECCCc
Confidence              33355 565 799999999876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.07  E-value=9.4e-09  Score=74.89  Aligned_cols=49  Identities=27%  Similarity=0.560  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822           87 GTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                      ....++.+++++.++.+++.++.+++++++++++.+..+...+|.++++
T Consensus       288 ~~~~~~~~~~l~~~g~l~~~v~~~~~~~~~~a~~~~~~~~~~gkvvv~~  336 (338)
T PRK09422        288 TRQDLEEAFQFGAEGKVVPKVQLRPLEDINDIFDEMEQGKIQGRMVIDF  336 (338)
T ss_pred             CHHHHHHHHHHHHhCCCCccEEEEcHHHHHHHHHHHHcCCccceEEEec
Confidence            3455678889999998877677789999999999998887778887654

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.06  E-value=9.9e-10  Score=80.83  Aligned_cols=36  Identities=36%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             CCCCccccccccEEEEEeCCCCCC------CCCCCEEEecCC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKC------FEVGDRVGVGPY   40 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~------~~vGdrV~~~~~   40 (158)
                      ..+|.++|+|++|+|+++|++|+.      |++||+|++.+.
T Consensus        52 ~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~   93 (361)
T cd08231          52 VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVG   93 (361)
T ss_pred             CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEccc
Confidence            457889999999999999999986      999999987643

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.03  E-value=8e-10  Score=80.65  Aligned_cols=34  Identities=50%  Similarity=0.769  Sum_probs=30.8

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ..|.++|+|++|+|+++|++++.|++||+|++..
T Consensus        52 ~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~   85 (343)
T cd08235          52 KPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAP   85 (343)
T ss_pred             CCCcccccceEEEEEeeCCCCCCCCCCCEEEEcc
Confidence            4578999999999999999999999999998863

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.03  E-value=1.3e-09  Score=80.96  Aligned_cols=34  Identities=44%  Similarity=0.676  Sum_probs=31.0

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ++|.++|+|++|+|+++|+++++|++||||++..
T Consensus        53 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   86 (386)
T cd08283          53 KKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPF   86 (386)
T ss_pred             CCCccccccceEEEEEeCCCCCCCCCCCEEEEcC
Confidence            3588999999999999999999999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.01  E-value=2.4e-09  Score=78.27  Aligned_cols=34  Identities=50%  Similarity=0.685  Sum_probs=30.9

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      .++|.++|+|++|+|+++|+++++|++||+|++.
T Consensus        52 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   85 (347)
T cd05278          52 AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVP   85 (347)
T ss_pred             CCCCceeccceEEEEEEECCCccccCCCCEEEec
Confidence            4558899999999999999999999999999874

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.01  E-value=1.8e-08  Score=73.59  Aligned_cols=60  Identities=33%  Similarity=0.616  Sum_probs=44.6

Q ss_pred             ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822           75 EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus        75 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                      ++..+.+...+ ....+++++++++++.+.+.++.+++++++++++.+..+...+|.++++
T Consensus       282 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         282 RGITIVGSLVG-TRQDLQEALEFAARGKVKPHIQVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             cccEEEEeccC-CHHHHHHHHHHHHcCCCcceeEEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            34444443333 3566778889999998877667899999999999998887778887653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.00  E-value=1.7e-08  Score=73.41  Aligned_cols=47  Identities=28%  Similarity=0.475  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           88 TQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        88 ~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ...+..++++++++.+.+.+.++++++++++++.+.++...+|.+++
T Consensus       291 ~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  337 (338)
T cd08254         291 PEDLPEVLDLIAKGKLDPQVETRPLDEIPEVLERLHKGKVKGRVVLV  337 (338)
T ss_pred             HHHHHHHHHHHHcCCCcccceeEcHHHHHHHHHHHHcCCccceEEEe
Confidence            44566788888888887657789999999999999888877787754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=98.99  E-value=2.3e-08  Score=72.61  Aligned_cols=48  Identities=21%  Similarity=0.307  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           87 GTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ....+..++++++++.+++. ...+++++++++++.+..+...+|.+++
T Consensus       293 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  341 (342)
T cd08266         293 TKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLT  341 (342)
T ss_pred             CHHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEe
Confidence            34455678888888888754 4789999999999998877666777653

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=98.99  E-value=2e-09  Score=78.95  Aligned_cols=34  Identities=53%  Similarity=0.666  Sum_probs=30.9

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +.|.++|+|++|+|+++|+++++|++||+|++.+
T Consensus        52 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   85 (351)
T cd08285          52 RHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPA   85 (351)
T ss_pred             CCCcccCcceEEEEEEecCCcCccCCCCEEEEcC
Confidence            4588999999999999999999999999998754

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=98.97  E-value=2.4e-08  Score=73.21  Aligned_cols=57  Identities=33%  Similarity=0.460  Sum_probs=42.2

Q ss_pred             cceeEEeeecCCHHHHHHHHHHHHhCCccc-ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           76 MRTIAGSIVGGGTQETKEMVEFCAENGIYP-EIEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      ...+.+.... ....+.+++++++++.+++ .+..+++++++++++.+..+...+|.++
T Consensus       291 ~~~i~~~~~~-~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv  348 (350)
T cd08240         291 ALTIQGSYVG-SLEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVL  348 (350)
T ss_pred             CcEEEEcccC-CHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEe
Confidence            3344444444 4556678889999998875 4578999999999999988777777765

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=98.97  E-value=1.1e-09  Score=79.18  Aligned_cols=143  Identities=13%  Similarity=0.067  Sum_probs=77.9

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceee------ee-----hhhh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF------KT-----VNLI   73 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~------~~-----~~~~   73 (158)
                      +..|.++|+|++|+|+++|+++++|++||+|++........+.+++...... ++.+|..+..      ..     ..+.
T Consensus        57 ~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~-~~~lp~~~~~~~a~~~~~~~~ta~~~~  135 (324)
T cd08244          57 PELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDS-LHPVPDGLDLEAAVAVVHDGRTALGLL  135 (324)
T ss_pred             CCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCceeeEEEEEchHH-eEeCCCCCCHHHHhhhcchHHHHHHHH
Confidence            3457899999999999999999999999999886411112344454443222 2233421111      10     0010


Q ss_pred             ------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-c
Q 040822           74 ------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-L  141 (158)
Q Consensus        74 ------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-~  141 (158)
                            .....++..  + .....+.++++++..+++++.. .+-++.   .+.+.+...  ..+++.     .+.+. .
T Consensus       136 ~~~~~~~~~~vlI~g--~-~~~~g~~~~~la~~~g~~v~~~-~~~~~~---~~~~~~~g~--~~~~~~~~~~~~~~~~~~  206 (324)
T cd08244         136 DLATLTPGDVVLVTA--A-AGGLGSLLVQLAKAAGATVVGA-AGGPAK---TALVRALGA--DVAVDYTRPDWPDQVREA  206 (324)
T ss_pred             HhcCCCCCCEEEEEc--C-CchHHHHHHHHHHHCCCEEEEE-eCCHHH---HHHHHHcCC--CEEEecCCccHHHHHHHH
Confidence                  111222211  1 2234467889999998875332 222222   222322222  222332     23345 6


Q ss_pred             CCccCcCccccCCCCC
Q 040822          142 KPRVGPWSCMDKIPSR  157 (158)
Q Consensus       142 t~g~g~d~v~d~~~~~  157 (158)
                      ++++++|+|+|+++++
T Consensus       207 ~~~~~~d~vl~~~g~~  222 (324)
T cd08244         207 LGGGGVTVVLDGVGGA  222 (324)
T ss_pred             cCCCCceEEEECCChH
Confidence            7888999999998763

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=98.96  E-value=2.9e-09  Score=78.58  Aligned_cols=34  Identities=35%  Similarity=0.551  Sum_probs=30.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      ...|.++|+|++|+|+++|+++..|++||||++.
T Consensus        53 ~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   86 (365)
T cd08278          53 TPLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLS   86 (365)
T ss_pred             CCCCcccccceeEEEEEeCCCcccCCCCCEEEEc
Confidence            3467899999999999999999999999999864

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=98.94  E-value=1.5e-09  Score=78.47  Aligned_cols=141  Identities=19%  Similarity=0.174  Sum_probs=78.7

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceee--------eeh----hh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF--------KTV----NL   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~--------~~~----~~   72 (158)
                      +++|.++|+|++|+|+++|+++++|++||+|++....  ..+.++...... .+..+|..+..        ...    .+
T Consensus        54 ~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--g~~~~~~~~~~~-~~~~lp~~~~~~~~a~~~~~~~ta~~~~  130 (323)
T cd05282          54 PPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGGE--GTWQEYVVAPAD-DLIPVPDSISDEQAAMLYINPLTAWLML  130 (323)
T ss_pred             CCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCCC--CcceeEEecCHH-HeEECCCCCCHHHHHHHhccHHHHHHHH
Confidence            3567899999999999999999999999999886511  134444443321 12233411111        000    00


Q ss_pred             ------hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-
Q 040822           73 ------IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-  140 (158)
Q Consensus        73 ------~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-  140 (158)
                            ..++..++..  . +....+.++++++..+++++...-+.++    .+.+++...  ..+++     +.+.+. 
T Consensus       131 ~~~~~~~~~~~vlI~g--~-~~~vg~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~~g~--~~~~~~~~~~~~~~~~~  201 (323)
T cd05282         131 TEYLKLPPGDWVIQNA--A-NSAVGRMLIQLAKLLGFKTINVVRRDEQ----VEELKALGA--DEVIDSSPEDLAQRVKE  201 (323)
T ss_pred             HHhccCCCCCEEEEcc--c-ccHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHhcCC--CEEecccchhHHHHHHH
Confidence                  0111222211  1 2234577889999998876443333222    222222222  12222     233455 


Q ss_pred             cCCccCcCccccCCCCC
Q 040822          141 LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       141 ~t~g~g~d~v~d~~~~~  157 (158)
                      .+.++++|+|+|+++++
T Consensus       202 ~~~~~~~d~vl~~~g~~  218 (323)
T cd05282         202 ATGGAGARLALDAVGGE  218 (323)
T ss_pred             HhcCCCceEEEECCCCH
Confidence            78889999999998763

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=98.94  E-value=2.8e-09  Score=77.67  Aligned_cols=33  Identities=45%  Similarity=0.671  Sum_probs=29.9

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      .+|.++|+|++|+|+++|++++.|++||||++.
T Consensus        52 ~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~   84 (337)
T cd08261          52 SYPRILGHELSGEVVEVGEGVAGLKVGDRVVVD   84 (337)
T ss_pred             CCCcccccccEEEEEEeCCCCCCCCCCCEEEEC
Confidence            347889999999999999999999999999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=98.93  E-value=5.7e-09  Score=76.27  Aligned_cols=32  Identities=44%  Similarity=0.567  Sum_probs=29.5

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEe
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGV   37 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~   37 (158)
                      +.|.++|+|++|+|+++|++|..|++||||++
T Consensus        52 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   83 (345)
T cd08287          52 RAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIA   83 (345)
T ss_pred             CCCcccccceEEEEEEeCCCCCccCCCCEEEe
Confidence            34789999999999999999999999999977

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=98.92  E-value=6.7e-09  Score=75.86  Aligned_cols=33  Identities=45%  Similarity=0.627  Sum_probs=30.3

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      .|.++|+|++|+|.++|++|+.|++||||++..
T Consensus        53 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   85 (344)
T cd08284          53 PGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPF   85 (344)
T ss_pred             CCcccccceEEEEEeeCCCccccCCCCEEEEcc
Confidence            478899999999999999999999999998764

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=98.90  E-value=8.9e-09  Score=75.11  Aligned_cols=142  Identities=19%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeee--------e----hhh--
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFK--------T----VNL--   72 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~--------~----~~~--   72 (158)
                      .|.++|+|++|+|+++|++++.|++||+|++.... ...+.++....... +..+|..+...        .    ..+  
T Consensus        63 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~g~~~~~~~v~~~~-~~~lp~~~~~~~aa~~~~~~~ta~~~l~~  140 (341)
T cd08290          63 PPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPG-LGTWRTHAVVPADD-LIKVPNDVDPEQAATLSVNPCTAYRLLED  140 (341)
T ss_pred             CCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCCC-CccchheEeccHHH-eEeCCCCCCHHHHHHhhccHHHHHHHHHh
Confidence            57799999999999999999999999999876431 12344554443221 22344221110        0    001  


Q ss_pred             ----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC--------cccc
Q 040822           73 ----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG--------QHLE  140 (158)
Q Consensus        73 ----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~--------~~~~  140 (158)
                          ..+...++..  + .-...+.++++++..+++.+....+.++.++..+.+.+-...  .++...        +.+.
T Consensus       141 ~~~~~~g~~vlI~g--~-~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~i~  215 (341)
T cd08290         141 FVKLQPGDWVIQNG--A-NSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGAD--HVLTEEELRSLLATELLK  215 (341)
T ss_pred             hcccCCCCEEEEcc--c-hhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCC--EEEeCcccccccHHHHHH
Confidence                0111112111  1 233457788999999987654444433222333333322221  222222        2244


Q ss_pred             -cCCccCcCccccCCCC
Q 040822          141 -LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       141 -~t~g~g~d~v~d~~~~  156 (158)
                       .+++ ++|.|+|++++
T Consensus       216 ~~~~~-~~d~vld~~g~  231 (341)
T cd08290         216 SAPGG-RPKLALNCVGG  231 (341)
T ss_pred             HHcCC-CceEEEECcCc
Confidence             4565 89999998875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=98.90  E-value=1.1e-08  Score=74.82  Aligned_cols=43  Identities=44%  Similarity=0.791  Sum_probs=33.9

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF   49 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   49 (158)
                      .+|.++|+|++|+|+++|++++.|++||+|++.+.. +|+.|.+
T Consensus        53 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~   95 (343)
T cd05285          53 KEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGV-PCRTCEF   95 (343)
T ss_pred             CCCcccCcceeEEEEeeCCCCCCCCCCCEEEEcccc-CCCCChh
Confidence            357789999999999999999999999999875332 4444443

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.90  E-value=7.6e-08  Score=69.06  Aligned_cols=58  Identities=17%  Similarity=0.156  Sum_probs=42.1

Q ss_pred             cceeEEeeecCC----HHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           76 MRTIAGSIVGGG----TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        76 ~~~i~g~~~~~~----~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      +.++.+.... .    ...+..++++++++.+++.+ ..+++++++++++.+.++...+|.+++
T Consensus       242 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  304 (305)
T cd08270         242 GRRLYTFFLY-DGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLD  304 (305)
T ss_pred             cceEEEEEcc-CHHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence            4445554433 2    23456778888899888643 689999999999999888777888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=98.90  E-value=1.2e-08  Score=75.33  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY   40 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~   40 (158)
                      .+|.++|+|++|+|+++|++|+++++||||++...
T Consensus        52 ~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~   86 (365)
T cd05279          52 PLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFG   86 (365)
T ss_pred             CCCcccccceeEEEEEeCCCcccCCCCCEEEEcCC
Confidence            45789999999999999999999999999987643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=98.90  E-value=8.3e-09  Score=76.45  Aligned_cols=34  Identities=47%  Similarity=0.615  Sum_probs=30.6

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ++|.++|+|++|+|+++|+++..|++||||++..
T Consensus        52 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   85 (375)
T cd08282          52 EPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPF   85 (375)
T ss_pred             CCCceeccccEEEEEEeCCCCCcCCCCCEEEEeC
Confidence            4588999999999999999999999999997643

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=98.90  E-value=1.1e-08  Score=76.00  Aligned_cols=44  Identities=36%  Similarity=0.599  Sum_probs=35.1

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF   49 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   49 (158)
                      +++|.++|+|++|+|+++|++++.|++||||++.+.. .|+.|..
T Consensus        85 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~  128 (384)
T cd08265          85 TEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMM-WCGMCRA  128 (384)
T ss_pred             cCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCC-CCCCChh
Confidence            3568899999999999999999999999999875433 4544433

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.90  E-value=6.3e-08  Score=70.33  Aligned_cols=46  Identities=30%  Similarity=0.453  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEE
Q 040822           87 GTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFV  132 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~v  132 (158)
                      ....+++++++++++.+++.++++++++++++++.++.....+|.+
T Consensus       283 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v  328 (329)
T cd08298         283 TRQDGEEFLKLAAEIPIKPEVETYPLEEANEALQDLKEGRIRGAAV  328 (329)
T ss_pred             CHHHHHHHHHHHHcCCCCceEEEEeHHHHHHHHHHHHcCCCcceee
Confidence            3455678889999998887678899999999999998877776664

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=98.89  E-value=8.3e-08  Score=70.05  Aligned_cols=47  Identities=15%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHhCCccc--c-eEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           87 GTQETKEMVEFCAENGIYP--E-IEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~--~-i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      ....+++++++++++.+++  + .+.+++++++++++.+.++...+|.++
T Consensus       291 ~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv  340 (341)
T cd08262         291 TPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILV  340 (341)
T ss_pred             cHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEe
Confidence            3445678889999998874  2 478999999999999988777777764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=98.88  E-value=1.1e-08  Score=75.56  Aligned_cols=34  Identities=47%  Similarity=0.573  Sum_probs=30.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCC---CCCCCEEEec
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKC---FEVGDRVGVG   38 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~---~~vGdrV~~~   38 (158)
                      ..+|.++|+|++|+|+++|+++++   |++||||++.
T Consensus        51 ~~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~   87 (367)
T cd08263          51 FPPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGS   87 (367)
T ss_pred             CCCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEc
Confidence            356789999999999999999988   9999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.88  E-value=5.6e-09  Score=73.40  Aligned_cols=36  Identities=44%  Similarity=0.569  Sum_probs=32.0

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY   40 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~   40 (158)
                      ...|.++|+|++|+|.++|++++.|++||+|++...
T Consensus        27 ~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~   62 (271)
T cd05188          27 PKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPN   62 (271)
T ss_pred             CCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCC
Confidence            345889999999999999999999999999987653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=98.87  E-value=9.2e-09  Score=75.15  Aligned_cols=35  Identities=49%  Similarity=0.670  Sum_probs=31.2

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY   40 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~   40 (158)
                      .+|.++|+|++|+|+++|+++++|++||+|++...
T Consensus        56 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   90 (341)
T PRK05396         56 PVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGH   90 (341)
T ss_pred             CCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCC
Confidence            35779999999999999999999999999987643

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=98.86  E-value=1.5e-08  Score=72.92  Aligned_cols=136  Identities=17%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCce---eee--e---h--hh----
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEV---KFK--T---V--NL----   72 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~---~~~--~---~--~~----   72 (158)
                      +|.++|+|++|+|+++|++++.|++||+|++....   ++.+++..... .++.+|..+   ...  .   +  .+    
T Consensus        51 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~g---~~~~~~~v~~~-~~~~lP~~~~~~~~~~~~~~~a~~~~~~~~  126 (312)
T cd08269          51 EPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSGG---AFAEYDLADAD-HAVPLPSLLDGQAFPGEPLGCALNVFRRGW  126 (312)
T ss_pred             CCcccceeeEEEEEEECCCCcCCCCCCEEEEecCC---cceeeEEEchh-heEECCCchhhhHHhhhhHHHHHHHHHhcC
Confidence            47899999999999999999999999999876422   34455544432 222344211   000  0   0  00    


Q ss_pred             -hhccceeEEeeecCCHHHHHHHHHHHHhCCcc-cceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cCCc
Q 040822           73 -IMEMRTIAGSIVGGGTQETKEMVEFCAENGIY-PEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LKPR  144 (158)
Q Consensus        73 -~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~-~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t~g  144 (158)
                       ..+...++.   + .-...+.++++++..+++ +++.... ++   ..+.+.+...  ..++.     +.+.+. ++.+
T Consensus       127 ~~~~~~vlI~---g-~g~vg~~~~~la~~~g~~~v~~~~~~-~~---~~~~~~~~g~--~~~~~~~~~~~~~~l~~~~~~  196 (312)
T cd08269         127 IRAGKTVAVI---G-AGFIGLLFLQLAAAAGARRVIAIDRR-PA---RLALARELGA--TEVVTDDSEAIVERVRELTGG  196 (312)
T ss_pred             CCCCCEEEEE---C-CCHHHHHHHHHHHHcCCcEEEEECCC-HH---HHHHHHHhCC--ceEecCCCcCHHHHHHHHcCC
Confidence             011222222   2 223557788999999887 5432222 22   2222222222  22222     233455 6888


Q ss_pred             cCcCccccCCCC
Q 040822          145 VGPWSCMDKIPS  156 (158)
Q Consensus       145 ~g~d~v~d~~~~  156 (158)
                      +|+|+++|+.++
T Consensus       197 ~~vd~vld~~g~  208 (312)
T cd08269         197 AGADVVIEAVGH  208 (312)
T ss_pred             CCCCEEEECCCC
Confidence            999999998864

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=98.85  E-value=1.4e-08  Score=75.24  Aligned_cols=45  Identities=29%  Similarity=0.423  Sum_probs=36.2

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      .+|.++|||++|+|+++|++++.|++||||++... ..|+.|.+|+
T Consensus        59 ~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-~~c~~c~~c~  103 (373)
T cd08299          59 PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFV-PQCGKCRACL  103 (373)
T ss_pred             CCCccccccceEEEEEeCCCCccCCCCCEEEECCC-CCCCCChhhh
Confidence            46789999999999999999999999999987642 2455555543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=98.84  E-value=1.4e-07  Score=68.60  Aligned_cols=58  Identities=21%  Similarity=0.321  Sum_probs=43.2

Q ss_pred             cceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           76 MRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      +.++.+.... ....+++++++++++.+++. .+.+++++++++++.++++...+|.+++
T Consensus       274 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (334)
T PRK13771        274 DIEIIGHISA-TKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVK  332 (334)
T ss_pred             ccEEEEecCC-CHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            4444444444 45667788999999988754 4789999999999999887777777654

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=98.84  E-value=6.3e-09  Score=75.71  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccCC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIAG   54 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~g   54 (158)
                      .++|.++|+|++|+|+++|++|+.|++||||++.... ....+++++....
T Consensus        56 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~  106 (336)
T TIGR02817        56 AGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDE  106 (336)
T ss_pred             CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcccceEEEcH
Confidence            3467899999999999999999999999999875311 1234556655543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=98.83  E-value=9e-09  Score=75.19  Aligned_cols=33  Identities=52%  Similarity=0.791  Sum_probs=30.3

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      .|.++|+|++|+|+++|+++..|++||||++.+
T Consensus        52 ~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~   84 (343)
T cd08236          52 PPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNP   84 (343)
T ss_pred             CCcccCcceEEEEEEECCCCCcCCCCCEEEEcC
Confidence            578899999999999999999999999998863

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=98.83  E-value=4e-08  Score=69.69  Aligned_cols=37  Identities=38%  Similarity=0.327  Sum_probs=33.4

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +|.++|.++|+|++|+|+++|+++++|++||||++..
T Consensus        16 ~~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   52 (277)
T cd08255          16 EKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG   52 (277)
T ss_pred             ccCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC
Confidence            4667899999999999999999999999999998753

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=98.82  E-value=1.6e-07  Score=68.11  Aligned_cols=47  Identities=26%  Similarity=0.403  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           87 GTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      ....+++++++++++.+++. .+++++++++++++.+..+...+|.++
T Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  331 (332)
T cd08259         284 TKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVL  331 (332)
T ss_pred             CHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEe
Confidence            34556778888888888754 468999999999999988776677653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=98.82  E-value=2.4e-08  Score=73.65  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      .++|.++|+|++|+|+++|++++.|++||||++.+
T Consensus        51 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   85 (363)
T cd08279          51 APLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSW   85 (363)
T ss_pred             CCCCccccccceEEEEEeCCCccccCCCCEEEECC
Confidence            35677999999999999999999999999998754

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=98.82  E-value=1.9e-07  Score=67.71  Aligned_cols=48  Identities=23%  Similarity=0.317  Sum_probs=36.9

Q ss_pred             HHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEEeCccc
Q 040822           92 KEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVIDIGQHL  139 (158)
Q Consensus        92 ~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~  139 (158)
                      ++++++..++.+++. .+.+++++++++++.+..+...+|.++++.+.+
T Consensus       284 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~~~  332 (334)
T PTZ00354        284 REVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNEPL  332 (334)
T ss_pred             HHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEecCCCC
Confidence            456677778877753 478999999999999888776788887775543

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=98.81  E-value=1.8e-08  Score=73.65  Aligned_cols=34  Identities=35%  Similarity=0.576  Sum_probs=30.2

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ++|.++|+|++|+|+++|++|++|++||+|++..
T Consensus        54 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   87 (340)
T TIGR00692        54 KPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVET   87 (340)
T ss_pred             CCCcccccceEEEEEEECCCCCcCCCCCEEEECC
Confidence            3467899999999999999999999999998753

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=98.81  E-value=3.1e-08  Score=72.43  Aligned_cols=33  Identities=52%  Similarity=0.699  Sum_probs=30.2

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +|.++|+|++|+|+++|++++.|++||||++..
T Consensus        54 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~   86 (345)
T cd08286          54 PGRILGHEGVGVVEEVGSAVTNFKVGDRVLISC   86 (345)
T ss_pred             CCceecccceEEEEEeccCccccCCCCEEEECC
Confidence            378999999999999999999999999998764

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08251 polyketide_synthase polyketide synthase

Probab=98.80  E-value=9.1e-09  Score=73.45  Aligned_cols=142  Identities=18%  Similarity=0.204  Sum_probs=76.7

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------hh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------NL   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~~   72 (158)
                      +++|.++|+|++|+|.++|+++++|++||+|++........+.+++..... .++.+|..++....            .+
T Consensus        35 ~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l  113 (303)
T cd08251          35 PPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVTVPED-QVVRKPASLSFEEACALPVVFLTVIDAF  113 (303)
T ss_pred             CCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEEccHH-HeEECCCCCCHHHHHHhHHHHHHHHHHH
Confidence            346889999999999999999999999999987642111233444444322 12234422211100            00


Q ss_pred             -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-c
Q 040822           73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-L  141 (158)
Q Consensus        73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~  141 (158)
                           ..++..++.  .+ .....+.++++++..+++++.....    .+..+.++....  ..+++     +.+.+. +
T Consensus       114 ~~~~~~~g~~vli~--~~-~~~~g~~~~~~a~~~g~~v~~~~~~----~~~~~~~~~~g~--~~~~~~~~~~~~~~i~~~  184 (303)
T cd08251         114 ARAGLAKGEHILIQ--TA-TGGTGLMAVQLARLKGAEIYATASS----DDKLEYLKQLGV--PHVINYVEEDFEEEIMRL  184 (303)
T ss_pred             HhcCCCCCCEEEEe--cC-CcHHHHHHHHHHHHcCCEEEEEcCC----HHHHHHHHHcCC--CEEEeCCCccHHHHHHHH
Confidence                 011111221  12 2334467788898888864322222    222333322222  22223     223355 6


Q ss_pred             CCccCcCccccCCCC
Q 040822          142 KPRVGPWSCMDKIPS  156 (158)
Q Consensus       142 t~g~g~d~v~d~~~~  156 (158)
                      ++++++|.++|++++
T Consensus       185 ~~~~~~d~v~~~~~~  199 (303)
T cd08251         185 TGGRGVDVVINTLSG  199 (303)
T ss_pred             cCCCCceEEEECCcH
Confidence            888899999998753

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=98.80  E-value=6.7e-09  Score=75.31  Aligned_cols=133  Identities=11%  Similarity=0.095  Sum_probs=72.7

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEE--EEEcCCCcee-----------e--ee-
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVY--VIVEVPKEVK-----------F--KT-   69 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~--v~~g~~~~~~-----------~--~~-   69 (158)
                      +.|.++|+|++|+|++   .+++|++||||++.     +++++++......  .++.+|+.++           +  +. 
T Consensus        58 ~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~-----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~  129 (329)
T cd08294          58 EGDTMIGTQVAKVIES---KNSKFPVGTIVVAS-----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGL  129 (329)
T ss_pred             CCCcEecceEEEEEec---CCCCCCCCCEEEee-----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHH
Confidence            4689999999999985   56789999999763     2344555554331  2233442221           0  00 


Q ss_pred             ---hhhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----
Q 040822           70 ---VNLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----  135 (158)
Q Consensus        70 ---~~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----  135 (158)
                         ..+.      .++..++...   +-...+.++++++..+++++....+ +   +..+.+++...  ..+++.     
T Consensus       130 ta~~al~~~~~~~~g~~vlI~ga---~g~vG~~aiqlA~~~G~~vi~~~~s-~---~~~~~l~~~Ga--~~vi~~~~~~~  200 (329)
T cd08294         130 TAYFGLLEICKPKAGETVVVNGA---AGAVGSLVGQIAKIKGCKVIGCAGS-D---DKVAWLKELGF--DAVFNYKTVSL  200 (329)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecC---ccHHHHHHHHHHHHcCCEEEEEeCC-H---HHHHHHHHcCC--CEEEeCCCccH
Confidence               0110      1122222221   2234577899999998874332222 2   23343443333  223333     


Q ss_pred             Ccccc-cCCccCcCccccCCCC
Q 040822          136 GQHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       136 ~~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      .+.+. .++ +|+|+|+|++|+
T Consensus       201 ~~~v~~~~~-~gvd~vld~~g~  221 (329)
T cd08294         201 EEALKEAAP-DGIDCYFDNVGG  221 (329)
T ss_pred             HHHHHHHCC-CCcEEEEECCCH
Confidence            23344 455 799999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=98.79  E-value=7.2e-09  Score=75.19  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=76.4

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeee------------hhhh
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKT------------VNLI   73 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~------------~~~~   73 (158)
                      ..|.++|+|++|+|.++|++|+.+++||||++.... ...+++++..... .++.+|..++...            ..+.
T Consensus        56 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~-~g~~~~~v~v~~~-~~~~lp~~~~~~~~~~~~~~~~ta~~~l~  133 (327)
T PRK10754         56 SLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSA-LGAYSSVHNVPAD-KAAILPDAISFEQAAASFLKGLTVYYLLR  133 (327)
T ss_pred             CCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCCC-CcceeeEEEcCHH-HceeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357789999999999999999999999999754321 1234455444321 1222342221110            0000


Q ss_pred             ------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-c
Q 040822           74 ------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-L  141 (158)
Q Consensus        74 ------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-~  141 (158)
                            .+...++..  + .-.-.+.++++++..+++++....+.+    ..+.++....  ..+++.     .+.++ .
T Consensus       134 ~~~~~~~g~~vlI~g--~-~g~ig~~~~~lak~~G~~v~~~~~~~~----~~~~~~~~g~--~~~~~~~~~~~~~~~~~~  204 (327)
T PRK10754        134 KTYEIKPDEQFLFHA--A-AGGVGLIACQWAKALGAKLIGTVGSAQ----KAQRAKKAGA--WQVINYREENIVERVKEI  204 (327)
T ss_pred             hhcCCCCCCEEEEEe--C-CcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHCCC--CEEEcCCCCcHHHHHHHH
Confidence                  011222211  2 223446788999999987543222222    2222222222  222332     23355 7


Q ss_pred             CCccCcCccccCCCC
Q 040822          142 KPRVGPWSCMDKIPS  156 (158)
Q Consensus       142 t~g~g~d~v~d~~~~  156 (158)
                      ++++|+|+++|++++
T Consensus       205 ~~~~~~d~vl~~~~~  219 (327)
T PRK10754        205 TGGKKVRVVYDSVGK  219 (327)
T ss_pred             cCCCCeEEEEECCcH
Confidence            888999999998764

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=98.77  E-value=3e-08  Score=72.54  Aligned_cols=141  Identities=18%  Similarity=0.154  Sum_probs=75.8

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc-ccccccccccCCEEEEEcCCCceeee------------ehh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN-SCQDCNFASIAGVYVIVEVPKEVKFK------------TVN   71 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~------------~~~   71 (158)
                      ..+|.++|+|++|+|+++|+++++|++||||++..... ...+.+++...... ++.+|..++..            ...
T Consensus        71 ~~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~-~~~lp~~~~~~~aa~~~~~~~ta~~~  149 (350)
T cd08248          71 IEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENE-VSKKPKNLSHEEAASLPYAGLTAWSA  149 (350)
T ss_pred             CCCCeeecceeEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHH-eecCCCCCCHHHHhhchhHHHHHHHH
Confidence            45688999999999999999999999999998754210 12344444443221 22344211110            000


Q ss_pred             hhh----------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc-c-c
Q 040822           72 LIM----------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ-H-L  139 (158)
Q Consensus        72 ~~~----------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~-~-~  139 (158)
                      +..          ++..++...   .-...+.++++++..+++++... + ++   ..+.++....  +.+++..+ + .
T Consensus       150 l~~~~~~~~~~~~g~~vlI~g~---~g~ig~~~~~~a~~~G~~v~~~~-~-~~---~~~~~~~~g~--~~~~~~~~~~~~  219 (350)
T cd08248         150 LVNVGGLNPKNAAGKRVLILGG---SGGVGTFAIQLLKAWGAHVTTTC-S-TD---AIPLVKSLGA--DDVIDYNNEDFE  219 (350)
T ss_pred             HHHhccCCCccCCCCEEEEECC---CChHHHHHHHHHHHCCCeEEEEe-C-cc---hHHHHHHhCC--ceEEECCChhHH
Confidence            100          122222211   12344677888998888754432 2 12   2222222222  22333322 1 2


Q ss_pred             c-cCCccCcCccccCCCC
Q 040822          140 E-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       140 ~-~t~g~g~d~v~d~~~~  156 (158)
                      . ++.++++|.++|++++
T Consensus       220 ~~l~~~~~vd~vi~~~g~  237 (350)
T cd08248         220 EELTERGKFDVILDTVGG  237 (350)
T ss_pred             HHHHhcCCCCEEEECCCh
Confidence            2 4556789999998875

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=98.76  E-value=8.5e-09  Score=74.87  Aligned_cols=133  Identities=11%  Similarity=0.077  Sum_probs=69.5

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEE---EcCCCceeee-------e------h
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVI---VEVPKEVKFK-------T------V   70 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~---~g~~~~~~~~-------~------~   70 (158)
                      .|.++|+|++|+|+++|   +.|++||||++..     .+.+++...+..+.   ...|..+++.       .      .
T Consensus        57 ~~~i~G~~~~g~v~~~~---~~~~~GdrV~~~~-----~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~  128 (325)
T TIGR02825        57 GDTMMGQQVARVVESKN---VALPKGTIVLASP-----GWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYF  128 (325)
T ss_pred             CCcEecceEEEEEEeCC---CCCCCCCEEEEec-----CceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHH
Confidence            47899999999999977   4699999998742     23344433322211   1113211111       0      0


Q ss_pred             hhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC------cc
Q 040822           71 NLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG------QH  138 (158)
Q Consensus        71 ~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~------~~  138 (158)
                      .+.      .++..++...   +-...+.++|+++..+++++....+-+    ..+.++....  ..+++..      +.
T Consensus       129 ~l~~~~~~~~g~~VLI~ga---~g~vG~~aiqlAk~~G~~Vi~~~~s~~----~~~~~~~lGa--~~vi~~~~~~~~~~~  199 (325)
T TIGR02825       129 GLLEICGVKGGETVMVNAA---AGAVGSVVGQIAKLKGCKVVGAAGSDE----KVAYLKKLGF--DVAFNYKTVKSLEET  199 (325)
T ss_pred             HHHHHhCCCCCCEEEEeCC---ccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCC--CEEEeccccccHHHH
Confidence            010      1122222221   223446789999999887543332322    2333333333  2223322      22


Q ss_pred             cccCCccCcCccccCCCC
Q 040822          139 LELKPRVGPWSCMDKIPS  156 (158)
Q Consensus       139 ~~~t~g~g~d~v~d~~~~  156 (158)
                      +..+.++|+|+|+|++|+
T Consensus       200 ~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       200 LKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             HHHhCCCCeEEEEECCCH
Confidence            333345799999999886

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=98.76  E-value=3.5e-08  Score=71.18  Aligned_cols=34  Identities=38%  Similarity=0.617  Sum_probs=30.9

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ..|.++|+|++|+|+++|++++.|++||+|++..
T Consensus        54 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   87 (306)
T cd08258          54 ETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSET   87 (306)
T ss_pred             CCCeeeccceEEEEEEECCCcCcCCCCCEEEEcc
Confidence            4578999999999999999999999999998864

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.75  E-value=4.6e-07  Score=65.73  Aligned_cols=59  Identities=22%  Similarity=0.237  Sum_probs=41.4

Q ss_pred             ccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           75 EMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        75 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ++..+.+...+ ....++++++++.++.+.+. ...+++++++++++.+.++...+|.+++
T Consensus       276 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         276 KGATLRGIAVG-SRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             cceEEEEEecC-cHHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence            34444444444 44556778888888877653 4789999999999998877666677653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=98.73  E-value=2.1e-08  Score=74.75  Aligned_cols=32  Identities=38%  Similarity=0.439  Sum_probs=29.2

Q ss_pred             ccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822            9 NCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY   40 (158)
Q Consensus         9 ~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~   40 (158)
                      .++|+|++|+|+++|++++.|++||||++...
T Consensus        83 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~  114 (393)
T cd08246          83 HIGGSDASGIVWAVGEGVKNWKVGDEVVVHCS  114 (393)
T ss_pred             cccccceEEEEEEeCCCCCcCCCCCEEEEecc
Confidence            58999999999999999999999999987653

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=98.71  E-value=4.1e-07  Score=65.98  Aligned_cols=33  Identities=42%  Similarity=0.548  Sum_probs=29.9

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      ++|.++|+|++|+|+++|++|+.|++||||++.
T Consensus        53 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~   85 (325)
T cd08264          53 PMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVY   85 (325)
T ss_pred             CCCeecccceeEEEEEECCCCCCCCCCCEEEEC
Confidence            357789999999999999999999999999865

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=98.71  E-value=5.8e-07  Score=65.32  Aligned_cols=46  Identities=41%  Similarity=0.757  Sum_probs=35.9

Q ss_pred             CHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEE
Q 040822           87 GTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFV  132 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~v  132 (158)
                      ....++.++++..++.+.+.++.+++++++++++.+.++...++.+
T Consensus       284 ~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v  329 (330)
T cd08245         284 GRADLQEALDFAAEGKVKPMIETFPLDQANEAYERMEKGDVRFRFV  329 (330)
T ss_pred             CHHHHHHHHHHHHcCCCcceEEEEcHHHHHHHHHHHHcCCCCccee
Confidence            3445567788888888876668899999999999988777666654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05281 TDH Threonine dehydrogenase

Probab=98.70  E-value=1.1e-07  Score=69.59  Aligned_cols=34  Identities=38%  Similarity=0.499  Sum_probs=30.4

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +.|.++|+|++|+|+++|++++.|++||+|+++.
T Consensus        56 ~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~   89 (341)
T cd05281          56 KPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAET   89 (341)
T ss_pred             CCCcccccceEEEEEEECCCCCCCCCCCEEEECC
Confidence            3567899999999999999999999999998863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=98.68  E-value=2.5e-08  Score=71.75  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=31.6

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ++.|.++|+|++|+|.++|+++..|++||+|++..
T Consensus        55 ~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~   89 (325)
T cd08253          55 PPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTN   89 (325)
T ss_pred             CCCCeecccceEEEEEeeCCCCCCCCCCCEEEEec
Confidence            45688999999999999999999999999998764

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=98.67  E-value=5.3e-08  Score=68.85  Aligned_cols=139  Identities=17%  Similarity=0.154  Sum_probs=73.8

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeee----------e--hhh--
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFK----------T--VNL--   72 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~----------~--~~~--   72 (158)
                      .|.++|+|++|+|.++|+++++|++||+|++...+   .+.++....... ++.+|..+...          .  ..+  
T Consensus        27 ~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~g---~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~a~~~~~~  102 (293)
T cd05195          27 DETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAPG---AFATHVRVDARL-VVKIPDSLSFEEAATLPVAYLTAYYALVD  102 (293)
T ss_pred             CCCccceeeeEEEEeecCCccCCCCCCEEEEEecC---cccceEEechhh-eEeCCCCCCHHHHhhchHHHHHHHHHHHH
Confidence            57899999999999999999999999999876422   344554443222 22233111110          0  000  


Q ss_pred             ----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cC
Q 040822           73 ----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LK  142 (158)
Q Consensus        73 ----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t  142 (158)
                          ..+...++.  .+ .-...+.+.++++..+++.+....+.+    ..+.+.+.......+++     +.+.+. .+
T Consensus       103 ~~~~~~g~~vlv~--g~-~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (293)
T cd05195         103 LARLQKGESVLIH--AA-AGGVGQAAIQLAQHLGAEVFATVGSEE----KREFLRELGGPVDHIFSSRDLSFADGILRAT  175 (293)
T ss_pred             HhccCCCCEEEEe--cC-CCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhCCCcceEeecCchhHHHHHHHHh
Confidence                011111111  11 223346678888888886433222222    22222221100011222     223455 67


Q ss_pred             CccCcCccccCCCC
Q 040822          143 PRVGPWSCMDKIPS  156 (158)
Q Consensus       143 ~g~g~d~v~d~~~~  156 (158)
                      .++++|.++|++++
T Consensus       176 ~~~~~d~vi~~~~~  189 (293)
T cd05195         176 GGRGVDVVLNSLSG  189 (293)
T ss_pred             CCCCceEEEeCCCc
Confidence            78899999998875

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=98.65  E-value=8.2e-08  Score=71.73  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=32.5

Q ss_pred             cccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822           10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      ++|+|++|+|+++|++++.|++||+|++.... .|+.|.+|
T Consensus        80 v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~~  119 (398)
T TIGR01751        80 IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQ-VDLTAPDG  119 (398)
T ss_pred             ecccceEEEEEEeCCCCCCCCCCCEEEEcccc-ccCCchhh
Confidence            89999999999999999999999999876533 34444444

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.64  E-value=6.8e-08  Score=69.65  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=76.4

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc---ccccccccccCCEEEEEcCCCceeeee------------
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN---SCQDCNFASIAGVYVIVEVPKEVKFKT------------   69 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~---~~~~~~~~~~~g~~v~~g~~~~~~~~~------------   69 (158)
                      ++.|.++|+|++|+|.++|+++++|++||+|++.....   ...+.+++...... ++..|..++...            
T Consensus        55 ~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~-~~~~p~~~~~~~~~~~~~~~~~a~  133 (326)
T cd08272          55 PPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARL-LALKPANLSMREAAALPLVGITAW  133 (326)
T ss_pred             CCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHH-cccCCCCCCHHHHHHhHHHHHHHH
Confidence            34588999999999999999999999999998764110   11233333332211 222332211110            


Q ss_pred             hhhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE----eCccc
Q 040822           70 VNLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID----IGQHL  139 (158)
Q Consensus        70 ~~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~----~~~~~  139 (158)
                      ..+.      .+...++...   .....+.++++++..+++++....+ ++.+    .+.....  +.+++    +.+.+
T Consensus       134 ~~l~~~~~~~~~~~vli~g~---~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~--~~~~~~~~~~~~~~  203 (326)
T cd08272         134 EGLVDRAAVQAGQTVLIHGG---AGGVGHVAVQLAKAAGARVYATASS-EKAA----FARSLGA--DPIIYYRETVVEYV  203 (326)
T ss_pred             HHHHHhcCCCCCCEEEEEcC---CCcHHHHHHHHHHHcCCEEEEEech-HHHH----HHHHcCC--CEEEecchhHHHHH
Confidence            0100      0112222211   1233467788999988886544433 3322    2222222  22223    22334


Q ss_pred             c-cCCccCcCccccCCCC
Q 040822          140 E-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       140 ~-~t~g~g~d~v~d~~~~  156 (158)
                      . .+.++++|.++|++++
T Consensus       204 ~~~~~~~~~d~v~~~~~~  221 (326)
T cd08272         204 AEHTGGRGFDVVFDTVGG  221 (326)
T ss_pred             HHhcCCCCCcEEEECCCh
Confidence            5 6788899999998775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=98.64  E-value=1.4e-07  Score=69.30  Aligned_cols=33  Identities=36%  Similarity=0.476  Sum_probs=29.9

Q ss_pred             CCccccccccEEEEEeCCCCC-CCCCCCEEEecC
Q 040822            7 IENCMGHEIVGAVKEVGSNVK-CFEVGDRVGVGP   39 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~-~~~vGdrV~~~~   39 (158)
                      .|.++|+|++|+|+++|++|+ +|++||||++..
T Consensus        58 ~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~   91 (352)
T cd08247          58 KEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIY   91 (352)
T ss_pred             CCCccCceeEEEEEEeCcccccCCCCCCEEEEee
Confidence            378999999999999999998 899999998764

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=98.63  E-value=6.3e-08  Score=70.78  Aligned_cols=33  Identities=42%  Similarity=0.575  Sum_probs=30.4

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      .|.++|+|++|+|+++|++++.|++||||+++.
T Consensus        54 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~   86 (339)
T cd08249          54 YPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFV   86 (339)
T ss_pred             CCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEe
Confidence            578899999999999999999999999998764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=98.62  E-value=1.1e-07  Score=69.51  Aligned_cols=32  Identities=47%  Similarity=0.749  Sum_probs=29.6

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEe
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGV   37 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~   37 (158)
                      .+|.++|+|++|+|+++|+++..|++||+|++
T Consensus        53 ~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~   84 (345)
T cd08260          53 TLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTV   84 (345)
T ss_pred             CCCeeeccceeEEEEEECCCCccCCCCCEEEE
Confidence            44789999999999999999999999999987

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.60  E-value=1.5e-06  Score=62.96  Aligned_cols=42  Identities=12%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           91 TKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        91 ~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      +++++++++++.++  + +.+.+++++++++++.+..+. .+|.++
T Consensus       273 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi  317 (319)
T cd08242         273 FAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLL  317 (319)
T ss_pred             HHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEe
Confidence            46788899999883  3 448899999999999998665 367765

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.58  E-value=1.4e-07  Score=68.06  Aligned_cols=34  Identities=44%  Similarity=0.673  Sum_probs=30.6

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +.|.++|+|++|+|.++|+++++|++||+|+++.
T Consensus        56 ~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   89 (328)
T cd08268          56 PLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIP   89 (328)
T ss_pred             CCCCCCCcceEEEEEeeCCCCCcCCCCCEEEecc
Confidence            4478999999999999999999999999998764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=98.58  E-value=1.2e-07  Score=69.31  Aligned_cols=136  Identities=16%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             CCCccccccc--cEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCC-Cceeee--e-----------
Q 040822            6 LIENCMGHEI--VGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP-KEVKFK--T-----------   69 (158)
Q Consensus         6 ~~p~~~G~e~--~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~-~~~~~~--~-----------   69 (158)
                      ++|+++|+++  .|++..+|+++++|++||||+++.     ++++|+.....-.+..+| ..++..  .           
T Consensus        66 ~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~g-----~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~  140 (338)
T cd08295          66 LPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGFT-----GWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAY  140 (338)
T ss_pred             CCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEecC-----CceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHH
Confidence            4588899754  567777899999999999997642     456666555311122232 211111  0           


Q ss_pred             hhhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHc-CCcceeEEEE------eC
Q 040822           70 VNLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLEN-RDVKYRFVID------IG  136 (158)
Q Consensus        70 ~~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~-~~~~~k~vl~------~~  136 (158)
                      ..+.      .++..++...   +-...+.++|+++..+++++....+.+    ..+.+++ ....  .+++      +.
T Consensus       141 ~~l~~~~~~~~g~~VlI~Ga---~G~vG~~aiqlAk~~G~~Vi~~~~~~~----~~~~~~~~lGa~--~vi~~~~~~~~~  211 (338)
T cd08295         141 AGFYEVCKPKKGETVFVSAA---SGAVGQLVGQLAKLKGCYVVGSAGSDE----KVDLLKNKLGFD--DAFNYKEEPDLD  211 (338)
T ss_pred             HHHHHhcCCCCCCEEEEecC---ccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcCCc--eeEEcCCcccHH
Confidence            0110      1122222221   223457789999999987543332222    2333322 2221  2223      22


Q ss_pred             cccc-cCCccCcCccccCCCC
Q 040822          137 QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       137 ~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      +.+. .++ +|+|+|+|++|+
T Consensus       212 ~~i~~~~~-~gvd~v~d~~g~  231 (338)
T cd08295         212 AALKRYFP-NGIDIYFDNVGG  231 (338)
T ss_pred             HHHHHhCC-CCcEEEEECCCH
Confidence            3344 554 799999999875

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=98.57  E-value=1.2e-07  Score=68.74  Aligned_cols=35  Identities=37%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +++|.++|+|++|+|.++|+++..|++||||++..
T Consensus        58 ~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~   92 (329)
T cd08250          58 VKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMS   92 (329)
T ss_pred             CCCCcccCceeEEEEEEECCCCCCCCCCCEEEEec
Confidence            35688999999999999999999999999998754

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>smart00829 PKS_ER Enoylreductase

Probab=98.56  E-value=9.2e-08  Score=67.60  Aligned_cols=33  Identities=39%  Similarity=0.468  Sum_probs=29.9

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      .|.++|+|++|+|+++|+.++.|++||||++..
T Consensus        23 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   55 (288)
T smart00829       23 GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA   55 (288)
T ss_pred             CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc
Confidence            367899999999999999999999999998764

Enoylreductase in Polyketide synthases.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=98.56  E-value=5.5e-08  Score=69.77  Aligned_cols=138  Identities=16%  Similarity=0.156  Sum_probs=74.5

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC-CccccccccccccCCEEEEEcCCCceeee------e------hhh
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP-YVNSCQDCNFASIAGVYVIVEVPKEVKFK------T------VNL   72 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~-~~~~~~~~~~~~~~g~~v~~g~~~~~~~~------~------~~~   72 (158)
                      .+|.++|+|++|+|..+|+++++|++||+|+++. ..   .+.+++...... +...|..++..      .      ..+
T Consensus        53 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~g---~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~a~~~l  128 (320)
T cd05286          53 PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGPPG---AYAEYRVVPASR-LVKLPDGISDETAAALLLQGLTAHYLL  128 (320)
T ss_pred             CCCccCCcceeEEEEEECCCCCCCCCCCEEEEecCCC---ceeEEEEecHHH-ceeCCCCCCHHHHhhccchHHHHHHHH
Confidence            3467899999999999999999999999998764 22   233443333221 22233111110      0      000


Q ss_pred             h------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-
Q 040822           73 I------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-  140 (158)
Q Consensus        73 ~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-  140 (158)
                      .      .+...++...   .-...+.++++++..+++++....+.+    ..+.+.+...  +.++.     +.+.+. 
T Consensus       129 ~~~~~~~~g~~vlI~g~---~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~--~~~~~~~~~~~~~~~~~  199 (320)
T cd05286         129 RETYPVKPGDTVLVHAA---AGGVGLLLTQWAKALGATVIGTVSSEE----KAELARAAGA--DHVINYRDEDFVERVRE  199 (320)
T ss_pred             HHhcCCCCCCEEEEEcC---CchHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHCCC--CEEEeCCchhHHHHHHH
Confidence            0      1111222111   123346778888888877543322222    2333333232  22222     223345 


Q ss_pred             cCCccCcCccccCCCC
Q 040822          141 LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       141 ~t~g~g~d~v~d~~~~  156 (158)
                      .+.++++|.++|++++
T Consensus       200 ~~~~~~~d~vl~~~~~  215 (320)
T cd05286         200 ITGGRGVDVVYDGVGK  215 (320)
T ss_pred             HcCCCCeeEEEECCCc
Confidence            6778899999998775

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=98.56  E-value=2.9e-06  Score=61.35  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=27.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      +++|.++|+|++|+|+++  +++.|++||||++.
T Consensus        55 ~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~   86 (325)
T cd05280          55 RNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVT   86 (325)
T ss_pred             CCCCCccCcccEEEEEEe--CCCCCCCCCEEEEc
Confidence            346889999999999999  56789999999874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=98.51  E-value=3.9e-06  Score=60.28  Aligned_cols=34  Identities=35%  Similarity=0.519  Sum_probs=30.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      ...|.++|+|++|+|.++|+++..|++||||++.
T Consensus        55 ~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~   88 (323)
T cd05276          55 PGASDILGLEVAGVVVAVGPGVTGWKVGDRVCAL   88 (323)
T ss_pred             CCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEe
Confidence            3457899999999999999999999999999875

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=98.49  E-value=1.8e-07  Score=67.36  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=31.0

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +.+|.++|+|++|+|.++|+++.+|++||+|++..
T Consensus        55 ~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~   89 (325)
T TIGR02824        55 PGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALV   89 (325)
T ss_pred             CCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEcc
Confidence            34578999999999999999999999999998753

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=98.47  E-value=3.8e-07  Score=66.37  Aligned_cols=33  Identities=48%  Similarity=0.662  Sum_probs=30.1

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      .+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus        51 ~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~   83 (334)
T cd08234          51 APPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVD   83 (334)
T ss_pred             CCCcccccceEEEEEEeCCCCCCCCCCCEEEEc
Confidence            367899999999999999999999999999874

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=98.46  E-value=3.6e-07  Score=66.51  Aligned_cols=47  Identities=26%  Similarity=0.442  Sum_probs=35.3

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccC
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIA   53 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~   53 (158)
                      .|.++|+|++|+|.++|+++..|++||+|++.... ...++++++...
T Consensus        59 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~  106 (336)
T cd08252          59 QPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVD  106 (336)
T ss_pred             CCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccceEEEEEc
Confidence            57799999999999999999999999999875321 123344555444

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.46  E-value=1.2e-06  Score=63.06  Aligned_cols=139  Identities=17%  Similarity=0.105  Sum_probs=74.1

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccCCEEEEEcCCCceeeee------------hhh-
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIAGVYVIVEVPKEVKFKT------------VNL-   72 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~g~~v~~g~~~~~~~~~------------~~~-   72 (158)
                      .|..+|+|++|+|.++|+++.+|++||||++.... ....+.++....... +..+|..+....            ..+ 
T Consensus        58 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~~~~~~-~~~ip~~~~~~~~~~~~~~~~~a~~~~~  136 (319)
T cd08267          58 FPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESG-LAKKPEGVSFEEAAALPVAGLTALQALR  136 (319)
T ss_pred             CCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCCCCceeeEEEEechhh-eEECCCCCCHHHHHhhhhHHHHHHHHHH
Confidence            46789999999999999999999999999876420 012334444443222 233442221110            000 


Q ss_pred             -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc-cc-c-cCCc
Q 040822           73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ-HL-E-LKPR  144 (158)
Q Consensus        73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~-~~-~-~t~g  144 (158)
                           ..+...++...   +-...+.++++++..+++++....+ ++    .+.++....  ..+++... +. . .+.+
T Consensus       137 ~~~~~~~g~~vli~g~---~g~~g~~~~~la~~~g~~v~~~~~~-~~----~~~~~~~g~--~~~~~~~~~~~~~~~~~~  206 (319)
T cd08267         137 DAGKVKPGQRVLINGA---SGGVGTFAVQIAKALGAHVTGVCST-RN----AELVRSLGA--DEVIDYTTEDFVALTAGG  206 (319)
T ss_pred             HhcCCCCCCEEEEEcC---CcHHHHHHHHHHHHcCCEEEEEeCH-HH----HHHHHHcCC--CEeecCCCCCcchhccCC
Confidence                 01111222111   1234467788899888875433222 22    232322222  12222211 11 3 6777


Q ss_pred             cCcCccccCCCC
Q 040822          145 VGPWSCMDKIPS  156 (158)
Q Consensus       145 ~g~d~v~d~~~~  156 (158)
                      +++|+++|+.++
T Consensus       207 ~~~d~vi~~~~~  218 (319)
T cd08267         207 EKYDVIFDAVGN  218 (319)
T ss_pred             CCCcEEEECCCc
Confidence            899999998773

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.45  E-value=4.3e-07  Score=65.57  Aligned_cols=138  Identities=16%  Similarity=0.239  Sum_probs=73.5

Q ss_pred             CccccccccEEEEEeCCCCCCCCCCCEEEecCCcc-ccccccccccCCEEEEEcCCCceeeee------------hhh--
Q 040822            8 ENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN-SCQDCNFASIAGVYVIVEVPKEVKFKT------------VNL--   72 (158)
Q Consensus         8 p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~------------~~~--   72 (158)
                      |.++|+|++|+|.++|+++++|++||+|++..... ..++.+++..... .++..|..+....            ..+  
T Consensus        57 ~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~-~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~  135 (325)
T cd08271          57 PHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDAR-AVLPLPDSLSFEEAAALPCAGLTAYQALFK  135 (325)
T ss_pred             CcccccceEEEEEEeCCCCCcCCCCCEEEeccCCCCCccceeEEEeCHH-HeEECCCCCCHHHHHhhhhhHHHHHHHHHH
Confidence            67899999999999999999999999998764110 1233344443322 2223442111100            000  


Q ss_pred             ----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cC
Q 040822           73 ----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LK  142 (158)
Q Consensus        73 ----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t  142 (158)
                          ..++..++...   +....+.++++++..+++++... .-++    .+.+.....  +.+++     +.+.+. .+
T Consensus       136 ~~~~~~g~~vlI~g~---~~~ig~~~~~~a~~~g~~v~~~~-~~~~----~~~~~~~g~--~~~~~~~~~~~~~~~~~~~  205 (325)
T cd08271         136 KLRIEAGRTILITGG---AGGVGSFAVQLAKRAGLRVITTC-SKRN----FEYVKSLGA--DHVIDYNDEDVCERIKEIT  205 (325)
T ss_pred             hcCCCCCCEEEEECC---ccHHHHHHHHHHHHcCCEEEEEE-cHHH----HHHHHHcCC--cEEecCCCccHHHHHHHHc
Confidence                01111222111   12344667788888888754332 2222    222222222  22222     223345 57


Q ss_pred             CccCcCccccCCCC
Q 040822          143 PRVGPWSCMDKIPS  156 (158)
Q Consensus       143 ~g~g~d~v~d~~~~  156 (158)
                      .++|+|.++|++++
T Consensus       206 ~~~~~d~vi~~~~~  219 (325)
T cd08271         206 GGRGVDAVLDTVGG  219 (325)
T ss_pred             CCCCCcEEEECCCc
Confidence            77899999998775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=98.41  E-value=4.3e-07  Score=65.40  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      +.|.++|+|++|+|+++|.  ..+++||||++..
T Consensus        55 ~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~   86 (320)
T cd08243          55 KFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAM   86 (320)
T ss_pred             CCCccccceeEEEEEEecC--CCCCCCCEEEEec
Confidence            4478899999999999995  5799999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=98.40  E-value=4.7e-07  Score=65.62  Aligned_cols=32  Identities=28%  Similarity=0.271  Sum_probs=27.1

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      .+|.++|+|++|+|+++|  ++.|++||||++..
T Consensus        56 ~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~   87 (326)
T cd08289          56 RYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTS   87 (326)
T ss_pred             CCCcCcccceeEEEEEcC--CCCCCCCCEEEEcc
Confidence            458899999999999954  57899999998764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=98.38  E-value=1.2e-05  Score=58.22  Aligned_cols=41  Identities=17%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             HHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           94 MVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        94 ~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      +.++...+.+.++.+.+++++++++++.+..+...+|.+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~k~vv~  322 (323)
T TIGR02823       282 LATDLKPRNLESITREITLEELPEALEQILAGQHRGRTVVD  322 (323)
T ss_pred             HHHHhhcCCCcCceeeecHHHHHHHHHHHhCCCccceEEEe
Confidence            33445566665556789999999999999887777777653

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>PLN02702 L-idonate 5-dehydrogenase

Probab=98.32  E-value=9.9e-07  Score=65.13  Aligned_cols=44  Identities=45%  Similarity=0.772  Sum_probs=35.5

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      ++|.++|+|++|+|+++|+++++|++||+|++.+.. .|+.|..|
T Consensus        72 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~c  115 (364)
T PLN02702         72 KEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGI-SCWRCNLC  115 (364)
T ss_pred             CCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCC-CCCCCcch
Confidence            357899999999999999999999999999876544 45555444

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=98.31  E-value=9.3e-07  Score=63.54  Aligned_cols=33  Identities=39%  Similarity=0.575  Sum_probs=29.8

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      .|.++|+|++|+|..+|+++..|++||+|++..
T Consensus        57 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~   89 (323)
T cd08241          57 LPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT   89 (323)
T ss_pred             CCCcccceeEEEEEEeCCCCCCCCCCCEEEEec
Confidence            366899999999999999999999999998764

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=98.27  E-value=1.3e-06  Score=63.81  Aligned_cols=41  Identities=37%  Similarity=0.678  Sum_probs=33.3

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccc
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC   47 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~   47 (158)
                      .+|.++|+|++|+|+++|++|+.|++||||++.+.. .|+.|
T Consensus        52 ~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~-~~~~~   92 (339)
T cd08232          52 REPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSR-PCGTC   92 (339)
T ss_pred             cCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCC-cCCCC
Confidence            457899999999999999999999999999875432 34444

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=98.22  E-value=2.3e-06  Score=62.11  Aligned_cols=30  Identities=37%  Similarity=0.266  Sum_probs=25.9

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      .+.++|+|++|+|+++|+.  +|++||||++.
T Consensus        64 ~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~   93 (329)
T cd05288          64 LGEPMRGGGVGEVVESRSP--DFKVGDLVSGF   93 (329)
T ss_pred             CCCcccCceEEEEEecCCC--CCCCCCEEecc
Confidence            4668899999999999964  79999999764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=98.20  E-value=3.8e-06  Score=61.62  Aligned_cols=143  Identities=15%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             CCCccccccccEE---EEEeC-CCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeee------------
Q 040822            6 LIENCMGHEIVGA---VKEVG-SNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKT------------   69 (158)
Q Consensus         6 ~~p~~~G~e~~G~---V~~vG-~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~------------   69 (158)
                      ++|.+++.+++|+   +..+| ..+..+..||++.....  ..++++|...+ ....+..|..+++..            
T Consensus        64 ~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--~g~~aey~v~p-~~~~~~~P~~l~~~~aa~~p~~~~tA~  140 (347)
T KOG1198|consen   64 EFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFLS--SGGLAEYVVVP-EKLLVKIPESLSFEEAAALPLAALTAL  140 (347)
T ss_pred             CCCCccccccCCceeEEeccccccccceEeeeEEeeccC--CCceeeEEEcc-hhhccCCCCccChhhhhcCchHHHHHH
Confidence            5776666666555   44445 34456778887754443  34677777665 333444552222211            


Q ss_pred             hhhhhcc------------ceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHH-cCCcceeEEEEeC
Q 040822           70 VNLIMEM------------RTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLE-NRDVKYRFVIDIG  136 (158)
Q Consensus        70 ~~~~~~~------------~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~-~~~~~~k~vl~~~  136 (158)
                      ..+....            ..+.  ..+ +-...+.++|+++..++...++..+.+..+- .+.+. +...+++.. ++.
T Consensus       141 ~al~~~~~~~~~~~~~~g~~vLv--~gg-sggVG~~aiQlAk~~~~~~v~t~~s~e~~~l-~k~lGAd~vvdy~~~-~~~  215 (347)
T KOG1198|consen  141 SALFQLAPGKRSKKLSKGKSVLV--LGG-SGGVGTAAIQLAKHAGAIKVVTACSKEKLEL-VKKLGADEVVDYKDE-NVV  215 (347)
T ss_pred             HHHHhccccccccccCCCCeEEE--EeC-CcHHHHHHHHHHHhcCCcEEEEEcccchHHH-HHHcCCcEeecCCCH-HHH
Confidence            1111111            2222  223 4456789999999998544444455444332 22221 122334431 344


Q ss_pred             cccc-cCCccCcCccccCCCCC
Q 040822          137 QHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       137 ~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      +.+. .| +.|+|+|+|++++.
T Consensus       216 e~~kk~~-~~~~DvVlD~vg~~  236 (347)
T KOG1198|consen  216 ELIKKYT-GKGVDVVLDCVGGS  236 (347)
T ss_pred             HHHHhhc-CCCccEEEECCCCC
Confidence            4455 56 89999999999973

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=98.19  E-value=7.9e-05  Score=53.96  Aligned_cols=43  Identities=21%  Similarity=0.176  Sum_probs=33.3

Q ss_pred             HHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           92 KEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        92 ~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ..+.++..++.++++++.+++++++++++.+..+...+|.+++
T Consensus       281 ~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~vvv~  323 (324)
T cd08288         281 ARLARDLDPALLEALTREIPLADVPDAAEAILAGQVRGRVVVD  323 (324)
T ss_pred             HHHHHHHhcCCccccceeecHHHHHHHHHHHhcCCccCeEEEe
Confidence            3455566677777667889999999999999888777777754

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=97.95  E-value=3.6e-05  Score=48.22  Aligned_cols=44  Identities=30%  Similarity=0.500  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEE
Q 040822           90 ETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      .++++.+++.+|.+++.+ ++||++++.+|++.++.++..||+||
T Consensus        83 ~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   83 ALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             HHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             HHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            378999999999999866 69999999999999999999999975

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=97.72  E-value=0.00093  Score=47.78  Aligned_cols=87  Identities=11%  Similarity=0.072  Sum_probs=62.3

Q ss_pred             cccCCEEEEEcCC----Cc-e--e-eeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccH
Q 040822           50 ASIAGVYVIVEVP----KE-V--K-FKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYV  115 (158)
Q Consensus        50 ~~~~g~~v~~g~~----~~-~--~-~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~  115 (158)
                      +...+|+.++|.-    .+ .  . -....++.+..++.|.......     ...+++..|.++|+++..- .+-.+|.+
T Consensus       239 ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEna  318 (340)
T COG2130         239 LNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENA  318 (340)
T ss_pred             hccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhcc
Confidence            3446788888754    11 1  1 1335566778899999873122     3356888999999998644 35678999


Q ss_pred             HHHHHHHHcCCcceeEEEEeC
Q 040822          116 NGALERLENRDVKYRFVIDIG  136 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl~~~  136 (158)
                      +++|..+.+++..||.++.+.
T Consensus       319 P~Af~gLl~G~N~GK~vvKv~  339 (340)
T COG2130         319 PEAFIGLLSGKNFGKLVVKVA  339 (340)
T ss_pred             HHHHHHHhcCCccceEEEEec
Confidence            999999999999999987664

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.70  E-value=5.4e-05  Score=54.95  Aligned_cols=34  Identities=41%  Similarity=0.583  Sum_probs=31.0

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ++|.++|+|++|+|+++|+++.+|++||+|++..
T Consensus        56 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~   89 (331)
T cd08273          56 PLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALT   89 (331)
T ss_pred             CCCcccccceEEEEEEeCCCCccCCCCCEEEEeC
Confidence            4688999999999999999999999999998764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=97.47  E-value=2.9e-05  Score=64.09  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEeccc---HHHHHHHHHcCC-cceeEEEEeCcccc-cCCccCcCc
Q 040822           75 EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQY---VNGALERLENRD-VKYRFVIDIGQHLE-LKPRVGPWS  149 (158)
Q Consensus        75 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~---~~~a~~~~~~~~-~~~k~vl~~~~~~~-~t~g~g~d~  149 (158)
                      ++..+++...| +  ..|+++..+...++.++.++-+.|+   +.+.|.+++..+ .++|.. +|+..++ .|+|+|||+
T Consensus      1553 GekiLIHaGsG-G--VGQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdt-sFEq~vl~~T~GrGVdl 1628 (2376)
T KOG1202|consen 1553 GEKILIHAGSG-G--VGQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDT-SFEQHVLWHTKGRGVDL 1628 (2376)
T ss_pred             CcEEEEecCCC-c--hhHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccc-cHHHHHHHHhcCCCeee
Confidence            45667766655 4  4578888888999999888887776   556677777655 456665 7888888 999999999


Q ss_pred             cccCCCC
Q 040822          150 CMDKIPS  156 (158)
Q Consensus       150 v~d~~~~  156 (158)
                      |+|++..
T Consensus      1629 VLNSLae 1635 (2376)
T KOG1202|consen 1629 VLNSLAE 1635 (2376)
T ss_pred             ehhhhhH
Confidence            9998864

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=97.40  E-value=0.00028  Score=50.43  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ..|.++|+|++|+|+++|+++..|++||+|++..
T Consensus        58 ~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~   91 (309)
T cd05289          58 TLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMT   91 (309)
T ss_pred             CCCCccccceeEEEEeeCCCCCCCCCCCEEEEcc
Confidence            4488999999999999999999999999998765

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.39  E-value=0.00024  Score=51.48  Aligned_cols=34  Identities=41%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      ..|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus        55 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~   88 (337)
T cd08275          55 KPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT   88 (337)
T ss_pred             CCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec
Confidence            4477899999999999999999999999998764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=97.33  E-value=0.0012  Score=49.56  Aligned_cols=86  Identities=8%  Similarity=0.075  Sum_probs=57.6

Q ss_pred             cccccCCEEEEEcCC-C-ce------------eeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ce-EE
Q 040822           48 NFASIAGVYVIVEVP-K-EV------------KFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EI-EI  109 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~-~~------------~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i-~v  109 (158)
                      ..++++|+++++|.+ . ..            ++....+..++.++.++... ......++++++.++++++   ++ ++
T Consensus       287 ~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~i~~~~~i~~~~  365 (393)
T TIGR02819       287 EVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTP-VMKYNRNLMQAILHDRVQIAKAVNVTV  365 (393)
T ss_pred             HHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEeccCC-hhhhHHHHHHHHHcCCCCHHHceecce
Confidence            457889999999975 1 11            11223333445566664322 2222367899999999874   34 57


Q ss_pred             EecccHHHHHHHHHcCCcceeEEEEe
Q 040822          110 IPIQYVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus       110 ~~~~~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                      |++++++++|+.+.++. ..|.++.+
T Consensus       366 ~~l~~~~~a~~~~~~~~-~~Kvvi~~  390 (393)
T TIGR02819       366 ISLDDAPEGYAEFDAGA-AKKFVIDP  390 (393)
T ss_pred             ecHHHHHHHHHHHhhCC-ceEEEEeC
Confidence            99999999999998764 37887754

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.23  E-value=0.0019  Score=47.29  Aligned_cols=85  Identities=15%  Similarity=0.094  Sum_probs=61.0

Q ss_pred             ccccCCEEEEEcCC-C-ce-----eeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccH
Q 040822           49 FASIAGVYVIVEVP-K-EV-----KFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYV  115 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~-~~-----~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~  115 (158)
                      .++.+|+++.+|.. . ..     ..+...+..++.++.++... ..     ..++++++++.++.+++.+ ..++++++
T Consensus       240 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~  318 (338)
T cd08295         240 NMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVG-DYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESA  318 (338)
T ss_pred             HhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEeh-hhHHHHHHHHHHHHHHHHCCCeEceeecccCHHHH
Confidence            46778999988865 2 11     12334556677788876554 32     2256778899999988643 56999999


Q ss_pred             HHHHHHHHcCCcceeEEEE
Q 040822          116 NGALERLENRDVKYRFVID  134 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl~  134 (158)
                      +++++.++.+...+|.+++
T Consensus       319 ~~A~~~~~~~~~~GkvVl~  337 (338)
T cd08295         319 PEAFVGLFTGSNIGKQVVK  337 (338)
T ss_pred             HHHHHHHhcCCCCceEEEE
Confidence            9999999988888888865

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=97.11  E-value=0.0036  Score=46.96  Aligned_cols=86  Identities=17%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcC
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENR  125 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~  125 (158)
                      .++.+|+++.++.+  ....++...+...+..+.++..+ ...+.++++++++++.+++. .+++++++++++++.+.++
T Consensus       299 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~  377 (398)
T TIGR01751       299 VCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFA-NLREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRN  377 (398)
T ss_pred             hhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccC-cHHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcC
Confidence            35678899998866  22444455556677788888777 77778889999999988864 4789999999999999988


Q ss_pred             CcceeEEEEe
Q 040822          126 DVKYRFVIDI  135 (158)
Q Consensus       126 ~~~~k~vl~~  135 (158)
                      ...+|.++.+
T Consensus       378 ~~~gkvvv~~  387 (398)
T TIGR01751       378 HHQGNVAVLV  387 (398)
T ss_pred             CCCceEEEEe
Confidence            8888888654

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=97.09  E-value=0.0037  Score=46.80  Aligned_cols=84  Identities=15%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcC
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENR  125 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~  125 (158)
                      .++.+|+++.++..  ....++...+..++..+.++..+ ....+++++++++++.+.+. .+++++++++++++.+.++
T Consensus       304 ~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~  382 (393)
T cd08246         304 VCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFA-NDREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRN  382 (393)
T ss_pred             HhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccC-cHHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhC
Confidence            45678899988755  23445555666778888888777 77788899999999988764 4789999999999999877


Q ss_pred             -CcceeEEE
Q 040822          126 -DVKYRFVI  133 (158)
Q Consensus       126 -~~~~k~vl  133 (158)
                       ...+|.++
T Consensus       383 ~~~~gkvvv  391 (393)
T cd08246         383 QHHVGNMAV  391 (393)
T ss_pred             ccccceEEE
Confidence             66777764

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=97.05  E-value=0.0042  Score=45.86  Aligned_cols=84  Identities=23%  Similarity=0.260  Sum_probs=62.2

Q ss_pred             ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC--Ccc--c-ceEEEecccHHHHHH
Q 040822           49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN--GIY--P-EIEIIPIQYVNGALE  120 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~--~i~--~-~i~v~~~~~~~~a~~  120 (158)
                      .++.+|+++.++.. .  ...++...+..++..+.+...+ +...++++++++.++  .+.  . +.+++++++++++++
T Consensus       269 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~  347 (361)
T cd08231         269 LLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNY-DPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALE  347 (361)
T ss_pred             HhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccC-CchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHH
Confidence            45678999988855 2  2344444567788888888877 777788899999887  433  2 457899999999999


Q ss_pred             HHHcCCcceeEEEE
Q 040822          121 RLENRDVKYRFVID  134 (158)
Q Consensus       121 ~~~~~~~~~k~vl~  134 (158)
                      .++++.. +|.++.
T Consensus       348 ~~~~~~~-~k~vi~  360 (361)
T cd08231         348 LAESGTA-LKVVID  360 (361)
T ss_pred             HHHcCCc-eEEEeC
Confidence            9887763 677753

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.01  E-value=0.0061  Score=44.69  Aligned_cols=85  Identities=19%  Similarity=0.266  Sum_probs=61.7

Q ss_pred             ccccCCEEEEEcCCC---ceeeeehhhhhccceeEEeeecCCH------HHHHHHHHHHHhCCcccce-EEEecccHHHH
Q 040822           49 FASIAGVYVIVEVPK---EVKFKTVNLIMEMRTIAGSIVGGGT------QETKEMVEFCAENGIYPEI-EIIPIQYVNGA  118 (158)
Q Consensus        49 ~~~~~g~~v~~g~~~---~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a  118 (158)
                      .++++|+++.++.+.   ...++...+......+.+.... ..      ..+.++.++++.+.+++.+ .+||+++..++
T Consensus       230 ~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a  308 (326)
T COG0604         230 ALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLG-SRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAA  308 (326)
T ss_pred             HhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecce-ecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHH
Confidence            467789999998763   3345556666677788887766 44      3456788999999999877 59999995544


Q ss_pred             HHHHHc-CCcceeEEEE
Q 040822          119 LERLEN-RDVKYRFVID  134 (158)
Q Consensus       119 ~~~~~~-~~~~~k~vl~  134 (158)
                      ...... +...||.++.
T Consensus       309 ~a~~~~~~~~~GKvvl~  325 (326)
T COG0604         309 AAHLLLERRTTGKVVLK  325 (326)
T ss_pred             HHHHHcccCCcceEEEe
Confidence            443333 4788999875

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.81  E-value=0.012  Score=43.77  Aligned_cols=83  Identities=25%  Similarity=0.381  Sum_probs=56.1

Q ss_pred             cccC-CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHH
Q 040822           50 ASIA-GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALE  120 (158)
Q Consensus        50 ~~~~-g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~  120 (158)
                      ++.+ |+++.++.+ .  .+.+....+.. ...+.++..+.  ...++.+++++++++.+++   +.+.|++++++++++
T Consensus       276 ~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~  354 (368)
T TIGR02818       276 CHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFD  354 (368)
T ss_pred             hhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHH
Confidence            4454 899999876 2  23333333333 34566665430  2456788999999998863   458899999999999


Q ss_pred             HHHcCCcceeEEEE
Q 040822          121 RLENRDVKYRFVID  134 (158)
Q Consensus       121 ~~~~~~~~~k~vl~  134 (158)
                      .++++.. .|.++.
T Consensus       355 ~~~~~~~-~k~~v~  367 (368)
T TIGR02818       355 LMHEGKS-IRTVIH  367 (368)
T ss_pred             HHhCCCc-eeEEee
Confidence            9977653 476654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.56  E-value=0.017  Score=42.07  Aligned_cols=84  Identities=14%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             ccccCCEEEEEcCC-C-----cee--eeehhhhhccceeEEeeecCC------HHHHHHHHHHHHhCCcccce-EEEecc
Q 040822           49 FASIAGVYVIVEVP-K-----EVK--FKTVNLIMEMRTIAGSIVGGG------TQETKEMVEFCAENGIYPEI-EIIPIQ  113 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~-----~~~--~~~~~~~~~~~~i~g~~~~~~------~~~~~~~~~l~~~~~i~~~i-~v~~~~  113 (158)
                      .++++|+++.++.. .     ...  .....+..+...+.+.... .      ...+++++++++++.+++.+ ..++++
T Consensus       226 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~  304 (325)
T TIGR02825       226 QMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVN-RWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFE  304 (325)
T ss_pred             HhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEeh-hhhhhhhHHHHHHHHHHHHCCCcccceeccccHH
Confidence            46788999998854 1     111  1223455567777776532 2      23467888999999998643 678999


Q ss_pred             cHHHHHHHHHcCCcceeEEE
Q 040822          114 YVNGALERLENRDVKYRFVI  133 (158)
Q Consensus       114 ~~~~a~~~~~~~~~~~k~vl  133 (158)
                      +++++++.++++...+|.++
T Consensus       305 ~~~~A~~~~~~~~~~gkvVv  324 (325)
T TIGR02825       305 NMPAAFMGMLKGENLGKTIV  324 (325)
T ss_pred             HHHHHHHHHhcCCCCCeEEe
Confidence            99999999998887788764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=96.48  E-value=0.021  Score=41.85  Aligned_cols=84  Identities=19%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             ccccCCEEEEEcCC-Cc---eeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-KE---VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER  121 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~---~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~  121 (158)
                      .++.+|+++.++.+ ..   ..++...++.+..++.+.... ....+++++++++++.+.+   +.+.+++++++++++.
T Consensus       253 ~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~  331 (345)
T cd08260         253 SLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM-PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAA  331 (345)
T ss_pred             HhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC-CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHH
Confidence            45678899888866 21   334444455677888887666 6777888999999998864   4578999999999999


Q ss_pred             HHcCCcceeEEE
Q 040822          122 LENRDVKYRFVI  133 (158)
Q Consensus       122 ~~~~~~~~k~vl  133 (158)
                      ++.....++.++
T Consensus       332 ~~~~~~~~~~v~  343 (345)
T cd08260         332 MDDYATAGITVI  343 (345)
T ss_pred             HHcCCCCceEEe
Confidence            988877777764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=96.47  E-value=0.02  Score=41.16  Aligned_cols=64  Identities=13%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcC-----CcceeEEEEeCcccccCCccCcCccccCCCCC
Q 040822           90 ETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENR-----DVKYRFVIDIGQHLELKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~-----~~~~k~vl~~~~~~~~t~g~g~d~v~d~~~~~  157 (158)
                      ..+-+.|+++..+..++...-    .++..+.+++.     ..++|.-.++.+.+..+...|+|+-||.+||.
T Consensus       166 vGql~GQ~Ak~~Gc~VVGsaG----S~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~  234 (343)
T KOG1196|consen  166 VGQLVGQFAKLMGCYVVGSAG----SKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGK  234 (343)
T ss_pred             hHHHHHHHHHhcCCEEEEecC----ChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcH
Confidence            346788999988885433333    33334444332     23444433344445567889999999999985

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=96.44  E-value=0.032  Score=40.72  Aligned_cols=84  Identities=18%  Similarity=0.246  Sum_probs=59.2

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR  125 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~  125 (158)
                      ++..|+++.++.. ....++...+......+.+.... ....++.++++++++.+++   .+.+++++++.++++.+.++
T Consensus       248 l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~  326 (337)
T cd08261         248 VAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNA-TREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAP  326 (337)
T ss_pred             HhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccC-ChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcC
Confidence            4567888877654 33333334445556666666545 5667788999999999876   45789999999999999877


Q ss_pred             C-cceeEEEE
Q 040822          126 D-VKYRFVID  134 (158)
Q Consensus       126 ~-~~~k~vl~  134 (158)
                      . ..+|.+++
T Consensus       327 ~~~~~k~v~~  336 (337)
T cd08261         327 PGGVIKVLIE  336 (337)
T ss_pred             CCceEEEEEe
Confidence            3 55777764

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.43  E-value=0.023  Score=42.50  Aligned_cols=84  Identities=13%  Similarity=0.124  Sum_probs=62.1

Q ss_pred             ccccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE  123 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~  123 (158)
                      .++++|+++.++.. . ...++....+.+..++.+.... ....++++++++.++.+.+   ..+.+++++++++++.+.
T Consensus       295 ~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~  373 (386)
T cd08283         295 AVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTH-VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFD  373 (386)
T ss_pred             HhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCC-chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHH
Confidence            46778999999866 2 2334444456677788887656 5667888999999998875   347899999999999988


Q ss_pred             cCCc-ceeEEE
Q 040822          124 NRDV-KYRFVI  133 (158)
Q Consensus       124 ~~~~-~~k~vl  133 (158)
                      ++.. .+|.++
T Consensus       374 ~~~~~~~k~~~  384 (386)
T cd08283         374 KKEDGCIKVVL  384 (386)
T ss_pred             hCCCCeEEEEe
Confidence            7663 467765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.38  E-value=0.029  Score=41.65  Aligned_cols=82  Identities=22%  Similarity=0.355  Sum_probs=54.5

Q ss_pred             cccC-CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHH
Q 040822           50 ASIA-GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALE  120 (158)
Q Consensus        50 ~~~~-g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~  120 (158)
                      ++.+ |+++.++.+ .  .+......+. ....+.++..+.  ...++++++++++++.+++   +.++|+++++++|++
T Consensus       277 l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~  355 (368)
T cd08300         277 CHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFD  355 (368)
T ss_pred             hccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHH
Confidence            4455 899998865 2  2333333333 234566655430  3456788999999999874   347899999999999


Q ss_pred             HHHcCCcceeEEE
Q 040822          121 RLENRDVKYRFVI  133 (158)
Q Consensus       121 ~~~~~~~~~k~vl  133 (158)
                      .++++.. .|.++
T Consensus       356 ~~~~~~~-~k~~~  367 (368)
T cd08300         356 LMHAGKS-IRTVV  367 (368)
T ss_pred             HHhCCCC-ceeee
Confidence            9987653 36553

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=96.30  E-value=0.033  Score=40.75  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=59.7

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE  123 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~  123 (158)
                      .++.+|+++.++..  ..........+.++.++...... ....+.+++++++++.+.+   ..+++++++++++++.+.
T Consensus       255 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~  333 (344)
T cd08284         255 LVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCP-VRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFD  333 (344)
T ss_pred             hcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCC-cchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHh
Confidence            45678899888765  23333334445566776655445 5667888999999998874   457899999999999888


Q ss_pred             cCCcceeEEE
Q 040822          124 NRDVKYRFVI  133 (158)
Q Consensus       124 ~~~~~~k~vl  133 (158)
                      +... +|.++
T Consensus       334 ~~~~-~k~Vi  342 (344)
T cd08284         334 KRKV-LKVVL  342 (344)
T ss_pred             cCCc-eEEEe
Confidence            7666 77765

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.29  E-value=0.023  Score=41.24  Aligned_cols=85  Identities=9%  Similarity=0.071  Sum_probs=59.1

Q ss_pred             ccccCCEEEEEcCC-C-c------eeeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccc-eEEEeccc
Q 040822           49 FASIAGVYVIVEVP-K-E------VKFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPE-IEIIPIQY  114 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~-~------~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~-i~v~~~~~  114 (158)
                      .++.+|+++.++.. . .      .......+..++..+.+.... ..     ..+++++++++++.+++. ..++++++
T Consensus       230 ~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~  308 (329)
T cd08294         230 HMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVY-RWQDRWPEALKQLLKWIKEGKLKYREHVTEGFEN  308 (329)
T ss_pred             hhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhh-hhHHHHHHHHHHHHHHHHCCCCcCCcccccCHHH
Confidence            35678898888743 1 1      112233456677788876644 32     224577888899988763 35689999


Q ss_pred             HHHHHHHHHcCCcceeEEEE
Q 040822          115 VNGALERLENRDVKYRFVID  134 (158)
Q Consensus       115 ~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ++++++.++++...+|.+++
T Consensus       309 ~~~A~~~~~~~~~~gkvvv~  328 (329)
T cd08294         309 MPQAFIGMLKGENTGKAIVK  328 (329)
T ss_pred             HHHHHHHHHcCCCCCeEEEe
Confidence            99999999988888888764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.27  E-value=0.011  Score=36.86  Aligned_cols=52  Identities=27%  Similarity=0.411  Sum_probs=45.7

Q ss_pred             cccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHh
Q 040822           48 NFASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAE  100 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~  100 (158)
                      ..++++|++++++.+  ...+++...++.+++++.++..+ +..+++++++++.+
T Consensus        77 ~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~la~  130 (130)
T PF00107_consen   77 KLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGG-SPEDFQEALQLLAQ  130 (130)
T ss_dssp             HHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSG-GHHHHHHHHHHHH-
T ss_pred             HHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccC-CHHHHHHHHHHhcC
Confidence            357889999999988  57888999999999999999999 88999999998763

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=96.26  E-value=0.033  Score=41.47  Aligned_cols=83  Identities=16%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             ccccCCEEEEEcCC--Cc------------eeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEe
Q 040822           49 FASIAGVYVIVEVP--KE------------VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIP  111 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~------------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~  111 (158)
                      .++..|+++..+..  ..            ..++...+..++..+.+.... ....+++++++++++.+++   +.++++
T Consensus       274 ~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~  352 (375)
T cd08282         274 VTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQAP-VKKYNRQLRDLILAGRAKPSFVVSHVIS  352 (375)
T ss_pred             HhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecCC-chhhHHHHHHHHHcCCCChHHcEEEEee
Confidence            45678888777653  11            223334444556666666555 5566788899999999985   558999


Q ss_pred             cccHHHHHHHHHcCCcceeEEE
Q 040822          112 IQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus       112 ~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      +++++++++.+.++. .+|.++
T Consensus       353 l~~~~~a~~~~~~~~-~~kvvv  373 (375)
T cd08282         353 LEDAPEAYARFDKRL-ETKVVI  373 (375)
T ss_pred             HHHHHHHHHHHhcCC-ceEEEe
Confidence            999999999998877 677765

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.24  E-value=0.0085  Score=42.13  Aligned_cols=87  Identities=16%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             cccCCEEEEEcCC----Cceeee---ehhhhhccceeEEeeecCCHHHH----HHHHHHHHhCCcccce-EEEecccHHH
Q 040822           50 ASIAGVYVIVEVP----KEVKFK---TVNLIMEMRTIAGSIVGGGTQET----KEMVEFCAENGIYPEI-EIIPIQYVNG  117 (158)
Q Consensus        50 ~~~~g~~v~~g~~----~~~~~~---~~~~~~~~~~i~g~~~~~~~~~~----~~~~~l~~~~~i~~~i-~v~~~~~~~~  117 (158)
                      +++.|.++.+|..    ++++++   ...+..-+..+.|...+  ..++    .+++.+..++.+++.| ++||+++..+
T Consensus       235 Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g--~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vad  312 (336)
T KOG1197|consen  235 LKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDG--EVELVSYVARLFALVNSGHLKIHIDHVYPLSKVAD  312 (336)
T ss_pred             hccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCC--HHHHHHHHHHHHHHhhcCccceeeeeecchHHHHH
Confidence            6778899988854    333321   12222333344444433  3332    4667788889999866 8999999999


Q ss_pred             HHHHHHcCCcceeEEEEeCcc
Q 040822          118 ALERLENRDVKYRFVIDIGQH  138 (158)
Q Consensus       118 a~~~~~~~~~~~k~vl~~~~~  138 (158)
                      |++.++++...||.+|.+.++
T Consensus       313 A~~diesrktvGkvlLlp~~~  333 (336)
T KOG1197|consen  313 AHADIESRKTVGKVLLLPGPE  333 (336)
T ss_pred             HHHHHHhhhccceEEEeCCcc
Confidence            999999999999998876544

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=96.23  E-value=0.035  Score=40.66  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=60.4

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR  125 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~  125 (158)
                      ++.+|+++.++.+ ....++....+.++..+.+.... ....+++++++..++.+++   ..+.+++++++++++.+.+.
T Consensus       258 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~  336 (345)
T cd08287         258 ARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAP-VRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDER  336 (345)
T ss_pred             hccCCEEEEecccCCCCccCHHHHHhcceEEEEecCC-cHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCC
Confidence            4567888888766 33444443556678888877666 5677888999999999875   45789999999999988766


Q ss_pred             CcceeEEE
Q 040822          126 DVKYRFVI  133 (158)
Q Consensus       126 ~~~~k~vl  133 (158)
                      ... |.++
T Consensus       337 ~~~-k~~~  343 (345)
T cd08287         337 RAI-KVLL  343 (345)
T ss_pred             Cce-EEEe
Confidence            543 6664

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=96.14  E-value=0.036  Score=41.11  Aligned_cols=84  Identities=20%  Similarity=0.238  Sum_probs=59.9

Q ss_pred             ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC-HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG-TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER  121 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~  121 (158)
                      .++.+|+++.++.. .  ...++...++.+...+.++... . ...++++++++.++.+.+   ..+.++++++.++++.
T Consensus       276 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~  354 (367)
T cd08263         276 VVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGA-RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYEN  354 (367)
T ss_pred             HHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCC-CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHH
Confidence            35577888888755 2  2334444444567777775433 3 356788889999998875   3467999999999999


Q ss_pred             HHcCCcceeEEE
Q 040822          122 LENRDVKYRFVI  133 (158)
Q Consensus       122 ~~~~~~~~k~vl  133 (158)
                      ++.....+|+++
T Consensus       355 ~~~~~~~g~~~~  366 (367)
T cd08263         355 LRKGLIHGRAIV  366 (367)
T ss_pred             HhcCCccceeee
Confidence            988887788874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=96.10  E-value=0.049  Score=39.88  Aligned_cols=86  Identities=14%  Similarity=0.186  Sum_probs=58.7

Q ss_pred             ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC-Cccc-ceEEEecccHHHHHHHHHcC
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN-GIYP-EIEIIPIQYVNGALERLENR  125 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~-~i~~-~i~v~~~~~~~~a~~~~~~~  125 (158)
                      .++++|+++.++.+ .....+...+..+...+.+............+++++.++ .+.+ ..+++++++++++++.+..+
T Consensus       252 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~  331 (341)
T PRK05396        252 NMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSG  331 (341)
T ss_pred             HHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcC
Confidence            45678899998866 334444456666777777765330123345677888877 3443 44789999999999998876


Q ss_pred             CcceeEEEEe
Q 040822          126 DVKYRFVIDI  135 (158)
Q Consensus       126 ~~~~k~vl~~  135 (158)
                      . .+|.+++|
T Consensus       332 ~-~gk~vv~~  340 (341)
T PRK05396        332 Q-SGKVILDW  340 (341)
T ss_pred             C-CceEEEec
Confidence            6 68888765

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=96.06  E-value=0.061  Score=39.42  Aligned_cols=84  Identities=18%  Similarity=0.258  Sum_probs=59.2

Q ss_pred             ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~  124 (158)
                      .++.+|+++.++.. ....++...++.++.++.+....  ...+.++.++++++.+++   ..+++++++++++++.+..
T Consensus       255 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~  332 (345)
T cd08286         255 LVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVD--TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSA  332 (345)
T ss_pred             hccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCc--hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhc
Confidence            46678899988865 44445555556677788765433  345677888998888864   4578999999999999876


Q ss_pred             CC--cceeEEEE
Q 040822          125 RD--VKYRFVID  134 (158)
Q Consensus       125 ~~--~~~k~vl~  134 (158)
                      ..  -..|.++.
T Consensus       333 ~~~~~~~k~~~~  344 (345)
T cd08286         333 AAKHKALKVIID  344 (345)
T ss_pred             cCCCCeeEEEEe
Confidence            53  23477654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=96.05  E-value=0.04  Score=40.52  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             ccccCCEEEEEcCC-Cceeeeehhh-hhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNL-IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE  123 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~  123 (158)
                      .++.+|+++.++.. .....+...+ ..+..++.++...  ...+++++++++++.+++   ..+.+++++++++++.++
T Consensus       263 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~  340 (350)
T cd08256         263 MIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLG--PYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMA  340 (350)
T ss_pred             HhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccC--chhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHH
Confidence            45678888888754 3333333322 2455667766544  345678899999998886   458899999999999998


Q ss_pred             cCCcceeEE
Q 040822          124 NRDVKYRFV  132 (158)
Q Consensus       124 ~~~~~~k~v  132 (158)
                      ++...+|.+
T Consensus       341 ~~~~~~kvv  349 (350)
T cd08256         341 RGDDSIKVV  349 (350)
T ss_pred             hCCCceEEe
Confidence            776666664

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=96.05  E-value=0.039  Score=39.90  Aligned_cols=84  Identities=11%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC----------HHHHHHHHHHHHhCCccc-ceEEEecccH
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG----------TQETKEMVEFCAENGIYP-EIEIIPIQYV  115 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~~~~l~~~~~i~~-~i~v~~~~~~  115 (158)
                      .++.+|+++.++.+  ....+.......++.++.+.... .          ...++++++++.++.+++ ..+.++++++
T Consensus       227 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~  305 (324)
T cd08292         227 LLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGG-RWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDA  305 (324)
T ss_pred             hhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcH-HhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHH
Confidence            35678899888765  23344444455677888777653 2          124567888999998884 4578999999


Q ss_pred             HHHHHHHHcCCcceeEEE
Q 040822          116 NGALERLENRDVKYRFVI  133 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl  133 (158)
                      .++++.+......+|.++
T Consensus       306 ~~a~~~~~~~~~~~kvvv  323 (324)
T cd08292         306 AKAAAASMRPGRAGKVLL  323 (324)
T ss_pred             HHHHHHHHcCCCCceEEe
Confidence            999999887666666653

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.02  E-value=0.016  Score=41.36  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=51.3

Q ss_pred             cccccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC--Ccc--c-ceEEEeccc
Q 040822           48 NFASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN--GIY--P-EIEIIPIQY  114 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~--~i~--~-~i~v~~~~~  114 (158)
                      ..++++|+++.++..   .+.+++...++.+++++.++..+ +..+++++++++.++  .++  . +.+.|++++
T Consensus       206 ~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~  279 (280)
T TIGR03366       206 ESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNY-EPRHLDQAVRFLAANGQRFPFEELVGKPFPLAD  279 (280)
T ss_pred             HHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCC-CHHHHHHHHHHHHhhCCCCCHHHHhhccccccc
Confidence            346788999999964   34567777888899999999888 788899999999874  443  2 346788876

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=96.02  E-value=0.057  Score=39.45  Aligned_cols=83  Identities=20%  Similarity=0.239  Sum_probs=60.8

Q ss_pred             ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERL  122 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~  122 (158)
                      .++.+|+++.++.. .  ...++......+...+.+.... ....++.++++++++.+.+   ...+++++++.++++.+
T Consensus       254 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~  332 (343)
T cd08235         254 LVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAA-SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELA  332 (343)
T ss_pred             HhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecC-ChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHH
Confidence            45677888887754 2  2333445556677778777666 6677788899999998862   34789999999999999


Q ss_pred             HcCCcceeEEE
Q 040822          123 ENRDVKYRFVI  133 (158)
Q Consensus       123 ~~~~~~~k~vl  133 (158)
                      ..+. .+|.++
T Consensus       333 ~~~~-~~k~vi  342 (343)
T cd08235         333 ADGK-SLKIVI  342 (343)
T ss_pred             hCCC-cEEEEe
Confidence            8887 777764

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=96.00  E-value=0.072  Score=38.88  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=58.5

Q ss_pred             ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~  124 (158)
                      .++.+|+++.++.. .....+...+..+...+.+....  ...++++++++.++.+++   +.+++++++++++++.+..
T Consensus       251 ~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~  328 (339)
T cd08232         251 VVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRF--DDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAAD  328 (339)
T ss_pred             HHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecC--HHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHh
Confidence            45677888887644 23333333345566677666533  456778889999988753   4478999999999999987


Q ss_pred             CCcceeEEEE
Q 040822          125 RDVKYRFVID  134 (158)
Q Consensus       125 ~~~~~k~vl~  134 (158)
                      +...+|.+++
T Consensus       329 ~~~~gkvvv~  338 (339)
T cd08232         329 RTRSVKVQLS  338 (339)
T ss_pred             CCCceeEEEe
Confidence            7777888764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=95.96  E-value=0.078  Score=38.28  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             cccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC------HHHHHHHHHHHHhCCcccce-EEEecccHHHHHH
Q 040822           50 ASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG------TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALE  120 (158)
Q Consensus        50 ~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~------~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~  120 (158)
                      ++..|+++.++..  ....++....+.+...+.+.... .      ...+++++++++++.+.+.+ ..+++++++++++
T Consensus       231 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~  309 (324)
T cd08244         231 LAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGV-QAERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHA  309 (324)
T ss_pred             hccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHH
Confidence            5677888888765  22233434445667777766543 2      23356678888888887544 7899999999999


Q ss_pred             HHHcCCcceeEEEE
Q 040822          121 RLENRDVKYRFVID  134 (158)
Q Consensus       121 ~~~~~~~~~k~vl~  134 (158)
                      .+.++...+|.+++
T Consensus       310 ~~~~~~~~~kvv~~  323 (324)
T cd08244         310 ALEARSTVGKVLLL  323 (324)
T ss_pred             HHHcCCCCceEEEe
Confidence            99888777787753

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=95.87  E-value=0.12  Score=38.37  Aligned_cols=49  Identities=24%  Similarity=0.407  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822           87 GTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus        87 ~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                      .....+.+.++++++.+++.+ ++||+++..++++++.+....||.++.+
T Consensus       296 ~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~  345 (347)
T KOG1198|consen  296 SAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEK  345 (347)
T ss_pred             CHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEe
Confidence            566678889999999998754 8999999999999999988899998765

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.84  E-value=0.055  Score=39.82  Aligned_cols=86  Identities=15%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             ccccCCEEEEEcCC-Cc--eeeee--hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ce-EEEecccHHHHH
Q 040822           49 FASIAGVYVIVEVP-KE--VKFKT--VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EI-EIIPIQYVNGAL  119 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~--~~~~~--~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i-~v~~~~~~~~a~  119 (158)
                      .++.+|+++.++.. ..  ..++.  .....+...+.+.........+++++++++++.+++   ++ +.++++++++++
T Consensus       255 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~  334 (351)
T cd08285         255 VLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEAL  334 (351)
T ss_pred             HhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHH
Confidence            45678899988765 22  23321  222334556666554303456788999999999886   33 358999999999


Q ss_pred             HHHHcCCc-ceeEEEE
Q 040822          120 ERLENRDV-KYRFVID  134 (158)
Q Consensus       120 ~~~~~~~~-~~k~vl~  134 (158)
                      +.+++++. ..|.++.
T Consensus       335 ~~~~~~~~~~~k~~~~  350 (351)
T cd08285         335 MLMKDKPDDLIKPVII  350 (351)
T ss_pred             HHHhcccCCeEEEEEe
Confidence            99988764 4677654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02702 L-idonate 5-dehydrogenase

Probab=95.83  E-value=0.094  Score=38.84  Aligned_cols=84  Identities=13%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEec--ccHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPI--QYVNGALERL  122 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~--~~~~~a~~~~  122 (158)
                      .++.+|+++.++.. .........+..+...+.+....  ...++.++++++++.+.  + ..+.|++  ++++++++.+
T Consensus       274 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~  351 (364)
T PLN02702        274 ATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRY--RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS  351 (364)
T ss_pred             HHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccC--hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHH
Confidence            46778899888855 33333445566778888887654  35667889999999875  2 3466555  7999999998


Q ss_pred             HcCCcceeEEEE
Q 040822          123 ENRDVKYRFVID  134 (158)
Q Consensus       123 ~~~~~~~k~vl~  134 (158)
                      ......+|.++.
T Consensus       352 ~~~~~~~kvv~~  363 (364)
T PLN02702        352 ARGGNAIKVMFN  363 (364)
T ss_pred             hcCCCceEEEEe
Confidence            877666777753

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=95.46  E-value=0.16  Score=37.20  Aligned_cols=86  Identities=10%  Similarity=0.128  Sum_probs=57.5

Q ss_pred             ccccCCEEEEEcCC-Cceeeeeh-hhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTV-NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLE  123 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~  123 (158)
                      .++.+|+++.++.+ .....+.. .+..+...+.+.........+.+++++++++.++  + +...++++++.++++.+.
T Consensus       250 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~  329 (340)
T TIGR00692       250 AVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMR  329 (340)
T ss_pred             hhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHh
Confidence            45678899888765 32332222 4555666666544220224457788999999886  3 358899999999999988


Q ss_pred             cCCcceeEEEEe
Q 040822          124 NRDVKYRFVIDI  135 (158)
Q Consensus       124 ~~~~~~k~vl~~  135 (158)
                      ++. .+|.+++|
T Consensus       330 ~~~-~gkvvv~~  340 (340)
T TIGR00692       330 SGQ-TGKVILSL  340 (340)
T ss_pred             cCC-CceEEEeC
Confidence            776 47887653

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=95.25  E-value=0.1  Score=38.12  Aligned_cols=85  Identities=20%  Similarity=0.155  Sum_probs=58.9

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHH----------HHHHHHHHHHhCCcccc-eEEE---ec
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQ----------ETKEMVEFCAENGIYPE-IEII---PI  112 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~----------~~~~~~~l~~~~~i~~~-i~v~---~~  112 (158)
                      .++..|+++.++..  .+..++....+.++.++.+.... ...          .++++++++.++.+.+. ..++   ++
T Consensus       240 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  318 (341)
T cd08290         240 LLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLT-RWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPL  318 (341)
T ss_pred             HhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecH-HHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCH
Confidence            45678898888754  23334443446677888877654 221          35677888888888763 3567   99


Q ss_pred             ccHHHHHHHHHcCCcceeEEEE
Q 040822          113 QYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus       113 ~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ++++++++.+..+...+|.++.
T Consensus       319 ~~~~~a~~~~~~~~~~~k~v~~  340 (341)
T cd08290         319 EEFKDALANALKGGGGGKQVLV  340 (341)
T ss_pred             HHHHHHHHHHhhcCCCCeEEEe
Confidence            9999999999887777787754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=95.16  E-value=0.14  Score=36.96  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             ccccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCH----------HHHHHHHHHHHhCCcccc-eEEEecccH
Q 040822           49 FASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGT----------QETKEMVEFCAENGIYPE-IEIIPIQYV  115 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~----------~~~~~~~~l~~~~~i~~~-i~v~~~~~~  115 (158)
                      .++..|+++.++.. . ...++...+..++.++.+.... ..          ..++++++++.++.+.+. .+.++++++
T Consensus       226 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  304 (323)
T cd05282         226 SLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLR-QWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDF  304 (323)
T ss_pred             hhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEeh-HhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHH
Confidence            45677888888765 2 2233444444467777776654 32          235667788888888754 478999999


Q ss_pred             HHHHHHHHcCCcceeEEE
Q 040822          116 NGALERLENRDVKYRFVI  133 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl  133 (158)
                      +++++.+......+|.++
T Consensus       305 ~~a~~~~~~~~~~~kvv~  322 (323)
T cd05282         305 EEAVAAAEQPGRGGKVLL  322 (323)
T ss_pred             HHHHHHHhcCCCCceEee
Confidence            999999987766666654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=95.12  E-value=0.17  Score=37.90  Aligned_cols=83  Identities=16%  Similarity=0.154  Sum_probs=57.1

Q ss_pred             ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~  124 (158)
                      .++.+|+++.++.. ....+....+.....++.+.........+++++++++++.+++   ..+++++++++++++...+
T Consensus       296 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~  375 (384)
T cd08265         296 SIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASE  375 (384)
T ss_pred             HHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhc
Confidence            45678999988865 3333344455555667777653203345788999999998875   4578999999999998655


Q ss_pred             CCcceeEE
Q 040822          125 RDVKYRFV  132 (158)
Q Consensus       125 ~~~~~k~v  132 (158)
                      + ..+|.+
T Consensus       376 ~-~~~kvv  382 (384)
T cd08265         376 R-TDGKIT  382 (384)
T ss_pred             C-CCceEE
Confidence            4 455665

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=95.00  E-value=0.21  Score=36.51  Aligned_cols=84  Identities=18%  Similarity=0.149  Sum_probs=55.2

Q ss_pred             ccccCCEEEEEcCC-Cceee-eehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-KEVKF-KTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE  123 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~-~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~  123 (158)
                      .++.+|+++.++.. ..... .....+.++..+.+.... ....++++++++.++.+++   ....+++++++++++.+.
T Consensus       256 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~  334 (347)
T cd05278         256 VVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVP-VRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFD  334 (347)
T ss_pred             HhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccC-chhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHh
Confidence            45677888887754 22111 111223455666665544 4566788889999998875   357899999999999887


Q ss_pred             cCCc-ceeEEE
Q 040822          124 NRDV-KYRFVI  133 (158)
Q Consensus       124 ~~~~-~~k~vl  133 (158)
                      .... ..|.++
T Consensus       335 ~~~~~~~~~vv  345 (347)
T cd05278         335 NKPDGCIKVVI  345 (347)
T ss_pred             cCCCCceEEEe
Confidence            6655 456654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.99  E-value=0.0019  Score=40.47  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=37.1

Q ss_pred             HHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC-----cccc-cCCccCcCccccCCCC
Q 040822           92 KEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG-----QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus        92 ~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~-----~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      ..++++++..+.++++.    +.-++.++.+++...  ..+++..     +.++ +++++|+|+|||++|.
T Consensus         4 ~~a~q~ak~~G~~vi~~----~~~~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~   68 (130)
T PF00107_consen    4 LMAIQLAKAMGAKVIAT----DRSEEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS   68 (130)
T ss_dssp             HHHHHHHHHTTSEEEEE----ESSHHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred             HHHHHHHHHcCCEEEEE----ECCHHHHHHHHhhcc--cccccccccccccccccccccccceEEEEecCc
Confidence            56789999888544332    222334455555443  3344443     3566 7999999999999984

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=94.85  E-value=0.25  Score=35.47  Aligned_cols=84  Identities=14%  Similarity=0.097  Sum_probs=57.8

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC----HHHHHHHHHHHHhCCccc---ceEEEecccHHHHH
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG----TQETKEMVEFCAENGIYP---EIEIIPIQYVNGAL  119 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~  119 (158)
                      .++.+|+++.++..  .+..++...+......+.+.... .    ...+++++++++++.+++   ....++++++++++
T Consensus       218 ~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  296 (312)
T cd08269         218 LVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVER-DPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAF  296 (312)
T ss_pred             HhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEeccc-CccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHH
Confidence            45677888888754  23334444556666777665433 2    245778889999998875   34779999999999


Q ss_pred             HHHHcCCc-ceeEEE
Q 040822          120 ERLENRDV-KYRFVI  133 (158)
Q Consensus       120 ~~~~~~~~-~~k~vl  133 (158)
                      +.+.+++. .+|.++
T Consensus       297 ~~~~~~~~~~~~~~~  311 (312)
T cd08269         297 EAARRRPDGFIKGVI  311 (312)
T ss_pred             HHHHhCCCCceEEEe
Confidence            99888754 356653

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=94.75  E-value=0.3  Score=35.80  Aligned_cols=83  Identities=18%  Similarity=0.184  Sum_probs=57.6

Q ss_pred             ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHHc
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~~  124 (158)
                      .++.+|+++.++.+ ....++...+..+...+.+.... . ..++++++++.++.+.  + ..++++++++.++++.+..
T Consensus       254 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~  331 (343)
T cd05285         254 ATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRY-A-NTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAK  331 (343)
T ss_pred             HhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccC-h-HHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHc
Confidence            45678898888765 32333334555667777776555 3 5677888999888764  2 3478999999999999887


Q ss_pred             CCc-ceeEEE
Q 040822          125 RDV-KYRFVI  133 (158)
Q Consensus       125 ~~~-~~k~vl  133 (158)
                      +.. .+|+++
T Consensus       332 ~~~~~~k~~~  341 (343)
T cd05285         332 GKKGVIKVVI  341 (343)
T ss_pred             CCCCeeEEEE
Confidence            643 367764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=94.49  E-value=0.3  Score=35.70  Aligned_cols=83  Identities=23%  Similarity=0.328  Sum_probs=56.7

Q ss_pred             ccccCCEEEEEcCC-Cceee---eehhhhhccceeEEeeecCC-----HHHHHHHHHHHHhCCcc--c-ceEEEecccHH
Q 040822           49 FASIAGVYVIVEVP-KEVKF---KTVNLIMEMRTIAGSIVGGG-----TQETKEMVEFCAENGIY--P-EIEIIPIQYVN  116 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~---~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~  116 (158)
                      .++.+|+++.++.+ ....+   ....++.++..+.+.... .     ...++++++++.++.+.  + ....+++++++
T Consensus       247 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  325 (343)
T cd08236         247 LARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNS-YSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGP  325 (343)
T ss_pred             HhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeec-cccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHH
Confidence            45678898888865 32211   223445667777777654 4     45577888889888875  3 34789999999


Q ss_pred             HHHHHHHc-CCcceeEE
Q 040822          117 GALERLEN-RDVKYRFV  132 (158)
Q Consensus       117 ~a~~~~~~-~~~~~k~v  132 (158)
                      ++++.+++ ....+|.+
T Consensus       326 ~~~~~~~~~~~~~~k~v  342 (343)
T cd08236         326 AAFERLADREEFSGKVL  342 (343)
T ss_pred             HHHHHHHcCCCCeeEEe
Confidence            99999987 44455554

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=94.47  E-value=0.34  Score=35.08  Aligned_cols=86  Identities=14%  Similarity=0.103  Sum_probs=53.3

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC-HHHHHHHHHHHHh----CCcc-cceEEEecccHHHHHH
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG-TQETKEMVEFCAE----NGIY-PEIEIIPIQYVNGALE  120 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~l~~~----~~i~-~~i~v~~~~~~~~a~~  120 (158)
                      .++.+|+++.+|.+  ...+.+...++.++.++.+...... ......+++.+..    .+.. .+.+++++++++++++
T Consensus       232 ~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~  311 (326)
T cd08289         232 TLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALK  311 (326)
T ss_pred             HhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHH
Confidence            35678999999865  2333334455567788888643201 2222333333222    1111 2468899999999999


Q ss_pred             HHHcCCcceeEEEE
Q 040822          121 RLENRDVKYRFVID  134 (158)
Q Consensus       121 ~~~~~~~~~k~vl~  134 (158)
                      .+.++...+|.+++
T Consensus       312 ~~~~~~~~gkvvv~  325 (326)
T cd08289         312 QILQGRVTGRTVVK  325 (326)
T ss_pred             HHhcCcccceEEEe
Confidence            99988877787754

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05281 TDH Threonine dehydrogenase

Probab=94.32  E-value=0.35  Score=35.41  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             ccccCCEEEEEcCC-Cceeeee-hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-KEVKFKT-VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLE  123 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~  123 (158)
                      .++.+|+++.++.. .....+. ..+..+...+.+.........++++++++.++.+.  + ...++++++++++++.+.
T Consensus       251 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~  330 (341)
T cd05281         251 ALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMR  330 (341)
T ss_pred             HhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHh
Confidence            35678888888755 3222222 22455566666654320234567888999998875  2 346789999999999998


Q ss_pred             cCCcceeEEEE
Q 040822          124 NRDVKYRFVID  134 (158)
Q Consensus       124 ~~~~~~k~vl~  134 (158)
                      .+. .+|.+++
T Consensus       331 ~~~-~gk~vv~  340 (341)
T cd05281         331 SGK-CGKVVLY  340 (341)
T ss_pred             cCC-CceEEec
Confidence            887 7888753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=94.29  E-value=0.42  Score=34.74  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=56.6

Q ss_pred             ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHH
Q 040822           49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERL  122 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~  122 (158)
                      .++.+|+++.++.. .  ...+....+..+...+.+....  ...+++++++++++.+.+   ...++++++++++++.+
T Consensus       246 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  323 (334)
T cd08234         246 YARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN--PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGM  323 (334)
T ss_pred             HHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC--HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHH
Confidence            45678888888755 2  2333334444456677666543  455788889999998863   34789999999999999


Q ss_pred             HcCCcceeEEE
Q 040822          123 ENRDVKYRFVI  133 (158)
Q Consensus       123 ~~~~~~~k~vl  133 (158)
                      .+ ...+|.++
T Consensus       324 ~~-~~~~k~vi  333 (334)
T cd08234         324 RS-GGALKVVV  333 (334)
T ss_pred             hc-CCceEEEe
Confidence            87 55667653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=94.25  E-value=0.38  Score=35.72  Aligned_cols=83  Identities=22%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             cccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc--ceEEEecccHHHHHHHH
Q 040822           50 ASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP--EIEIIPIQYVNGALERL  122 (158)
Q Consensus        50 ~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~--~i~v~~~~~~~~a~~~~  122 (158)
                      ++.+|+++.++.+   ....++...+..+...+.+.....  ....++++++++.++.+.+  .++.+++++++++++.+
T Consensus       275 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~  354 (365)
T cd08278         275 LAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADS  354 (365)
T ss_pred             hccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHH
Confidence            4567888888764   233455555546677777665430  1234567888888888753  45789999999999998


Q ss_pred             HcCCcceeEEE
Q 040822          123 ENRDVKYRFVI  133 (158)
Q Consensus       123 ~~~~~~~k~vl  133 (158)
                      +.+.. .|.++
T Consensus       355 ~~~~~-~k~~~  364 (365)
T cd08278         355 ESGKV-IKPVL  364 (365)
T ss_pred             HCCCc-eEEEE
Confidence            77653 35553

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=93.77  E-value=0.59  Score=34.62  Aligned_cols=83  Identities=14%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             ccccCCEEEEEcCC---CceeeeehhhhhccceeEEeeec--CCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHH
Q 040822           49 FASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVG--GGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALE  120 (158)
Q Consensus        49 ~~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~--~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~  120 (158)
                      .++.+|+++.++..   ....++...+......+.++..+  .....+++++++++++.+++   ...++++++++++++
T Consensus       271 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~  350 (363)
T cd08279         271 MTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFA  350 (363)
T ss_pred             HhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHH
Confidence            34567888887654   23445555555556666666432  03466788899999998875   447899999999999


Q ss_pred             HHHcCCcceeEE
Q 040822          121 RLENRDVKYRFV  132 (158)
Q Consensus       121 ~~~~~~~~~k~v  132 (158)
                      .+.++... |.+
T Consensus       351 ~~~~~~~~-~~~  361 (363)
T cd08279         351 DMLAGENA-RGV  361 (363)
T ss_pred             HHhcCCce-eEE
Confidence            98876643 444

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=93.77  E-value=0.091  Score=31.55  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=18.2

Q ss_pred             cEEEEEeCCCCC----CCCCCCEEEe
Q 040822           16 VGAVKEVGSNVK----CFEVGDRVGV   37 (158)
Q Consensus        16 ~G~V~~vG~~v~----~~~vGdrV~~   37 (158)
                      .|+|+++|++..    .+++||+|+.
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~   71 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLL   71 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEE
Confidence            499999999753    4899999964

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=93.46  E-value=0.11  Score=30.88  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=19.2

Q ss_pred             ccEEEEEeCCCC---------CCCCCCCEEEec
Q 040822           15 IVGAVKEVGSNV---------KCFEVGDRVGVG   38 (158)
Q Consensus        15 ~~G~V~~vG~~v---------~~~~vGdrV~~~   38 (158)
                      ..|+|.++|++.         ..+++||+|+..
T Consensus        35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~   67 (93)
T cd00320          35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFP   67 (93)
T ss_pred             eEEEEEEECCCeECCCCCCccccccCCCEEEEC
Confidence            469999999973         359999999643

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=93.13  E-value=0.12  Score=30.84  Aligned_cols=24  Identities=38%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             ccEEEEEeCCCCC---------CCCCCCEEEec
Q 040822           15 IVGAVKEVGSNVK---------CFEVGDRVGVG   38 (158)
Q Consensus        15 ~~G~V~~vG~~v~---------~~~vGdrV~~~   38 (158)
                      ..|+|+++|++..         .+++||+|+..
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~   68 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG   68 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence            4699999999642         48999999653

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=92.46  E-value=0.78  Score=33.27  Aligned_cols=43  Identities=23%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822           91 TKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      ++++++++.++.+++   ..+.+++++++++++.++.+...+|.++
T Consensus       280 ~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  325 (327)
T PRK10754        280 SNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLL  325 (327)
T ss_pred             HHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEE
Confidence            346788899998874   2478999999999999988888888876

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=92.33  E-value=0.66  Score=33.59  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=55.0

Q ss_pred             ccccCCEEEEEcCC-Cc-e-----eeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccc-eEEEecccH
Q 040822           49 FASIAGVYVIVEVP-KE-V-----KFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPE-IEIIPIQYV  115 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~-~-----~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~-i~v~~~~~~  115 (158)
                      .++.+|+++.++.. .. .     .++....+.++.++.+.... ..     ..+.++++++.++.+++. ...++++++
T Consensus       233 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~  311 (329)
T cd05288         233 LLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVS-DYADRFPEALAELAKWLAEGKLKYREDVVEGLENA  311 (329)
T ss_pred             hcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecch-hhHHHHHHHHHHHHHHHHCCCccccccccccHHHH
Confidence            35678888888754 21 1     12234445667777776554 33     235677888888888753 356899999


Q ss_pred             HHHHHHHHcCCcceeEE
Q 040822          116 NGALERLENRDVKYRFV  132 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~v  132 (158)
                      .++++.+..+...+|.+
T Consensus       312 ~~a~~~~~~~~~~gkvv  328 (329)
T cd05288         312 PEAFLGLFTGKNTGKLV  328 (329)
T ss_pred             HHHHHHHhcCCCcccee
Confidence            99999988766555654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08293 PTGR2 Prostaglandin reductase

Probab=92.18  E-value=0.45  Score=34.82  Aligned_cols=44  Identities=7%  Similarity=0.091  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           91 TKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      +++++++.+++.+++.. ..+++++++++++.+.++...+|.++.
T Consensus       300 ~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~  344 (345)
T cd08293         300 IAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVK  344 (345)
T ss_pred             HHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCeEEEE
Confidence            56677899999988654 456999999999999888877888765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=92.17  E-value=1.8  Score=32.26  Aligned_cols=80  Identities=24%  Similarity=0.381  Sum_probs=52.2

Q ss_pred             ccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCH---HHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHH
Q 040822           51 SIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGT---QETKEMVEFCAENGIY--P-EIEIIPIQYVNGALER  121 (158)
Q Consensus        51 ~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~---~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~  121 (158)
                      +.+|+++.++.. .  .+.+.... +..+.++.++..+ ..   ..+.++++.+.++.++  + +.+.+++++++++++.
T Consensus       283 ~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~  360 (373)
T cd08299         283 EGYGVSVIVGVPPSSQNLSINPML-LLTGRTWKGAVFG-GWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDL  360 (373)
T ss_pred             cCCCEEEEEccCCCCceeecCHHH-HhcCCeEEEEEec-CCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHH
Confidence            357899999876 3  23333322 3356778887665 32   4566777777666544  3 4578999999999998


Q ss_pred             HHcCCcceeEEE
Q 040822          122 LENRDVKYRFVI  133 (158)
Q Consensus       122 ~~~~~~~~k~vl  133 (158)
                      +++... .|.++
T Consensus       361 ~~~~~~-~k~~~  371 (373)
T cd08299         361 LRSGKS-IRTVL  371 (373)
T ss_pred             HhCCCc-ceEEE
Confidence            876553 35554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=91.87  E-value=1.4  Score=32.72  Aligned_cols=78  Identities=21%  Similarity=0.410  Sum_probs=55.0

Q ss_pred             ccc-cCCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHH
Q 040822           49 FAS-IAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGAL  119 (158)
Q Consensus        49 ~~~-~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~  119 (158)
                      .++ .+|+++.++..   ....++...+ .+...+.+.+.+.  ....+..++++++++.+++   .+++++++++++++
T Consensus       273 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~  351 (365)
T cd05279         273 ATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGF  351 (365)
T ss_pred             HhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHH
Confidence            345 78888888754   3445555555 5667787775430  3455778888998888864   45789999999999


Q ss_pred             HHHHcCCc
Q 040822          120 ERLENRDV  127 (158)
Q Consensus       120 ~~~~~~~~  127 (158)
                      +.+++...
T Consensus       352 ~~~~~~~~  359 (365)
T cd05279         352 DLMRSGES  359 (365)
T ss_pred             HHHhCCCc
Confidence            98876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=91.86  E-value=0.47  Score=34.30  Aligned_cols=52  Identities=13%  Similarity=0.119  Sum_probs=42.3

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN  101 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~  101 (158)
                      .++.+|+++.++..  ....++...++++++++.++..+ +..++++++++++++
T Consensus       253 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~  306 (306)
T cd08258         253 LLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSS-TPASWETALRLLASG  306 (306)
T ss_pred             HhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecC-chHhHHHHHHHHhcC
Confidence            46778999988876  24555667777899999999999 999999999998865

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=91.85  E-value=0.048  Score=39.63  Aligned_cols=143  Identities=15%  Similarity=0.218  Sum_probs=80.9

Q ss_pred             CCCCccccccccEEEEEeCCCCCC-CCCCCEEEecCCccccccccccccCCEEEEEcCCCceee--------ee---hhh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKC-FEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF--------KT---VNL   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~-~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~--------~~---~~~   72 (158)
                      +++|.++|+|++|+|+++|++|++ |++||||++.... .+++++|+...... +..+|+.++.        ..   ..+
T Consensus        58 ~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~-~g~~a~~~~v~~~~-~~~iP~~~~~~~aa~~~~~~~ta~~~  135 (324)
T cd08291          58 KALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGS-YGTYAEYAVADAQQ-CLPLPDGVSFEQGASSFVNPLTALGM  135 (324)
T ss_pred             CCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCC-CCcchheeeecHHH-eEECCCCCCHHHHhhhcccHHHHHHH
Confidence            356899999999999999999986 9999999875431 13455555444322 2234422111        10   011


Q ss_pred             h-----hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-c
Q 040822           73 I-----MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-L  141 (158)
Q Consensus        73 ~-----~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~  141 (158)
                      .     .++..+... .+ .-...+.++++++..+++++....+-    +..+.+++...  ..+++     +.+.++ .
T Consensus       136 ~~~~~~~~~~vlv~~-~g-~g~vG~~a~q~a~~~G~~vi~~~~~~----~~~~~~~~~g~--~~~i~~~~~~~~~~v~~~  207 (324)
T cd08291         136 LETAREEGAKAVVHT-AA-ASALGRMLVRLCKADGIKVINIVRRK----EQVDLLKKIGA--EYVLNSSDPDFLEDLKEL  207 (324)
T ss_pred             HHhhccCCCcEEEEc-cC-ccHHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHcCC--cEEEECCCccHHHHHHHH
Confidence            1     112222211 12 23445778899999888754322222    22333333222  22333     233455 6


Q ss_pred             CCccCcCccccCCCCC
Q 040822          142 KPRVGPWSCMDKIPSR  157 (158)
Q Consensus       142 t~g~g~d~v~d~~~~~  157 (158)
                      +.++|+|+|+|++|++
T Consensus       208 ~~~~~~d~vid~~g~~  223 (324)
T cd08291         208 IAKLNATIFFDAVGGG  223 (324)
T ss_pred             hCCCCCcEEEECCCcH
Confidence            8888999999998863

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.81  E-value=1.8  Score=31.04  Aligned_cols=45  Identities=22%  Similarity=0.329  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhCCcccc-e-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           90 ETKEMVEFCAENGIYPE-I-EIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~-i-~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      .+..+++++.++.+++. . +.+++++++++++.+.+....++.+++
T Consensus       279 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~  325 (326)
T cd08272         279 ILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVID  325 (326)
T ss_pred             HHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEE
Confidence            35667788888888754 3 789999999999998877666677654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=91.73  E-value=1.8  Score=30.94  Aligned_cols=85  Identities=16%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCH----------HHHHHHHHHHHhCCccc-ceEEEecccH
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGT----------QETKEMVEFCAENGIYP-EIEIIPIQYV  115 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~----------~~~~~~~~l~~~~~i~~-~i~v~~~~~~  115 (158)
                      .++.+|+++.++..  ....++...++.++.++.+.... ..          ....+++++.+++.+++ .+..++++++
T Consensus       227 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  305 (325)
T TIGR02824       227 ALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLR-ARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDA  305 (325)
T ss_pred             hhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehh-hcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHH
Confidence            34677888888755  22234444445678888877644 21          11245667777887764 4477999999


Q ss_pred             HHHHHHHHcCCcceeEEEE
Q 040822          116 NGALERLENRDVKYRFVID  134 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl~  134 (158)
                      +++++.+......+|.+++
T Consensus       306 ~~~~~~~~~~~~~~~~v~~  324 (325)
T TIGR02824       306 AQAHALMESGDHIGKIVLT  324 (325)
T ss_pred             HHHHHHHHhCCCcceEEEe
Confidence            9999998877666676643

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=91.68  E-value=1.4  Score=31.42  Aligned_cols=83  Identities=19%  Similarity=0.335  Sum_probs=53.5

Q ss_pred             ccccCCEEEEEcCC-Ccee-eeehhhhhccceeEEeeecCCH---------HHHHHHHHHHHhCCcccc-eEEEecccHH
Q 040822           49 FASIAGVYVIVEVP-KEVK-FKTVNLIMEMRTIAGSIVGGGT---------QETKEMVEFCAENGIYPE-IEIIPIQYVN  116 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~-~~~~~~~~~~~~i~g~~~~~~~---------~~~~~~~~l~~~~~i~~~-i~v~~~~~~~  116 (158)
                      .++..|+++.++.+ .... ++......++..+.+.... ..         ..++++++++.++.+.+. ...+++++++
T Consensus       227 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (323)
T cd08241         227 SLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWG-AYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAA  305 (323)
T ss_pred             hhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecc-cccchhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHH
Confidence            35667888887755 2222 2233344566677766543 21         234567788888887753 4689999999


Q ss_pred             HHHHHHHcCCcceeEE
Q 040822          117 GALERLENRDVKYRFV  132 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~v  132 (158)
                      ++++.+......++.+
T Consensus       306 ~~~~~~~~~~~~~~vv  321 (323)
T cd08241         306 EALRALADRKATGKVV  321 (323)
T ss_pred             HHHHHHHhCCCCCcEE
Confidence            9999888766555655

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=91.47  E-value=0.27  Score=29.15  Aligned_cols=22  Identities=41%  Similarity=0.451  Sum_probs=16.9

Q ss_pred             cEEEEEeCCCC---------CCCCCCCEEEe
Q 040822           16 VGAVKEVGSNV---------KCFEVGDRVGV   37 (158)
Q Consensus        16 ~G~V~~vG~~v---------~~~~vGdrV~~   37 (158)
                      -|+|++||++-         -.+++||+|+.
T Consensus        37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf   67 (96)
T COG0234          37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLF   67 (96)
T ss_pred             ceEEEEEccceecCCCCEeccccccCCEEEE
Confidence            48999999742         13899999965

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=91.44  E-value=1.3  Score=32.14  Aligned_cols=83  Identities=11%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             ccccCCEEEEEcCCC-c-----------eeeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccc---eE
Q 040822           49 FASIAGVYVIVEVPK-E-----------VKFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPE---IE  108 (158)
Q Consensus        49 ~~~~~g~~v~~g~~~-~-----------~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~---i~  108 (158)
                      .++.+|+++.++.+. .           ..+ ....+.++..+.+.... ..     ..++++++++.++.+++.   .+
T Consensus       226 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  303 (329)
T cd08250         226 NLALKGRLIVIGFISGYQSGTGPSPVKGATL-PPKLLAKSASVRGFFLP-HYAKLIPQHLDRLLQLYQRGKLVCEVDPTR  303 (329)
T ss_pred             HhccCCeEEEEecccCCcccCcccccccccc-cHHHhhcCceEEEEEhH-HHHHHHHHHHHHHHHHHHCCCeeeeECCcc
Confidence            356788888887541 1           011 12334566777776543 22     235677888888888762   34


Q ss_pred             EEecccHHHHHHHHHcCCcceeEEE
Q 040822          109 IIPIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus       109 v~~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      .+++++++++++.+..+...+|.++
T Consensus       304 ~~~~~~~~~a~~~~~~~~~~~kvvv  328 (329)
T cd08250         304 FRGLESVADAVDYLYSGKNIGKVVV  328 (329)
T ss_pred             ccCHHHHHHHHHHHHcCCCCceEEe
Confidence            6899999999999987766667654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=91.22  E-value=0.35  Score=28.56  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=18.2

Q ss_pred             ccEEEEEeCCCCC----CCCCCCEEEe
Q 040822           15 IVGAVKEVGSNVK----CFEVGDRVGV   37 (158)
Q Consensus        15 ~~G~V~~vG~~v~----~~~vGdrV~~   37 (158)
                      ..|+|+++|++..    .+++||+|+.
T Consensus        36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~   62 (91)
T PRK14533         36 MKAEVVAVGKLDDEEDFDIKVGDKVIF   62 (91)
T ss_pred             ceEEEEEECCCCccccccccCCCEEEE
Confidence            4699999997542    4899999964

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=91.13  E-value=2.1  Score=30.52  Aligned_cols=85  Identities=14%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             ccccCCEEEEEcCC-Cc-eeeeehhhhhccceeEEeeec---CCHHH----HHHHHHHHHhCCccc-ceEEEecccHHHH
Q 040822           49 FASIAGVYVIVEVP-KE-VKFKTVNLIMEMRTIAGSIVG---GGTQE----TKEMVEFCAENGIYP-EIEIIPIQYVNGA  118 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~-~~~~~~~~~~~~~~i~g~~~~---~~~~~----~~~~~~l~~~~~i~~-~i~v~~~~~~~~a  118 (158)
                      .++.+|+++.++.. .. ..++...+..+...+.+....   .....    ++++++++.++.+++ ..+.+++++++++
T Consensus       224 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a  303 (320)
T cd05286         224 SLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQA  303 (320)
T ss_pred             hhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHH
Confidence            45678888888755 22 122333333455555443221   01222    345777888888775 3468999999999


Q ss_pred             HHHHHcCCcceeEEE
Q 040822          119 LERLENRDVKYRFVI  133 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl  133 (158)
                      ++.+..+...++.++
T Consensus       304 ~~~~~~~~~~~~vv~  318 (320)
T cd05286         304 HRDLESRKTTGKLLL  318 (320)
T ss_pred             HHHHHcCCCCceEEE
Confidence            999987776677764

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=90.87  E-value=1.6  Score=31.68  Aligned_cols=83  Identities=11%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             ccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecCC------------HHHHHHHHHHHHhCCcccce----EEEec
Q 040822           49 FASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGG------------TQETKEMVEFCAENGIYPEI----EIIPI  112 (158)
Q Consensus        49 ~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~------------~~~~~~~~~l~~~~~i~~~i----~v~~~  112 (158)
                      .++.+|+++.++... ..++...+..++..+.+.... .            ...++++++++.++.+++..    ..+++
T Consensus       237 ~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  314 (336)
T cd08252         237 LIAPQGHICLIVDPQ-EPLDLGPLKSKSASFHWEFMF-TRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINA  314 (336)
T ss_pred             HhcCCCEEEEecCCC-CcccchhhhcccceEEEEEee-ccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCH
Confidence            456778888877541 222333333455566554322 1            12356778888889887642    24799


Q ss_pred             ccHHHHHHHHHcCCcceeEEE
Q 040822          113 QYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus       113 ~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      ++++++++.+.++...+|.++
T Consensus       315 ~~~~~a~~~~~~~~~~~~vv~  335 (336)
T cd08252         315 ENLREAHALLESGKTIGKIVL  335 (336)
T ss_pred             HHHHHHHHHHHcCCccceEEe
Confidence            999999999988776666653

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=90.67  E-value=0.28  Score=29.07  Aligned_cols=24  Identities=38%  Similarity=0.416  Sum_probs=17.1

Q ss_pred             ccEEEEEeCC--------CC-CCCCCCCEEEec
Q 040822           15 IVGAVKEVGS--------NV-KCFEVGDRVGVG   38 (158)
Q Consensus        15 ~~G~V~~vG~--------~v-~~~~vGdrV~~~   38 (158)
                      ..|+|+++|+        .+ ..+++||+|...
T Consensus        35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~   67 (93)
T PF00166_consen   35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFP   67 (93)
T ss_dssp             EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEE
T ss_pred             ceeEEEEcCCccccCCCcEeeeeeeeccEEecc
Confidence            4699999999        33 368999999653

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=90.62  E-value=1.6  Score=31.24  Aligned_cols=83  Identities=16%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             ccccCCEEEEEcCC-Ccee---eeehhhh--hccceeEEeeecCCH--HHHHHHHHHHHhCCccc-ceEEEecccHHHHH
Q 040822           49 FASIAGVYVIVEVP-KEVK---FKTVNLI--MEMRTIAGSIVGGGT--QETKEMVEFCAENGIYP-EIEIIPIQYVNGAL  119 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~---~~~~~~~--~~~~~i~g~~~~~~~--~~~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~  119 (158)
                      .++.+|+++.+|.+ ....   .......  ..+..+.+.... ..  ..++.++++.+++.+++ ....++++++++++
T Consensus       227 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~  305 (320)
T cd08243         227 HLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSG-DVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAH  305 (320)
T ss_pred             HhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchh-hhhHHHHHHHHHHHHCCceecccccEEcHHHHHHHH
Confidence            45678898888764 1111   1112222  345556555433 22  34567788888888875 34789999999999


Q ss_pred             HHHHcCCcceeEE
Q 040822          120 ERLENRDVKYRFV  132 (158)
Q Consensus       120 ~~~~~~~~~~k~v  132 (158)
                      +.+..+...+|.+
T Consensus       306 ~~~~~~~~~~kvv  318 (320)
T cd08243         306 AYMESNRAFGKVV  318 (320)
T ss_pred             HHHHhCCCCCcEE
Confidence            9998777666765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=90.26  E-value=2.3  Score=30.37  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=51.1

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecC-CHHH----HHHHHHHHHhCCcccc-eEEEecccHHHHHHHH
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGG-GTQE----TKEMVEFCAENGIYPE-IEIIPIQYVNGALERL  122 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~-~~~~----~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~  122 (158)
                      ++..|+++.++.+ .........++.....+.+...+. ....    ...+.+++.++.+++. ..++++++++++++.+
T Consensus       233 l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  312 (325)
T cd08253         233 LAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAV  312 (325)
T ss_pred             hCCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHH
Confidence            4566777777654 222222333344555565544320 1122    3345566677777653 4789999999999999


Q ss_pred             HcCCcceeEEEE
Q 040822          123 ENRDVKYRFVID  134 (158)
Q Consensus       123 ~~~~~~~k~vl~  134 (158)
                      ..+...+|.+++
T Consensus       313 ~~~~~~~kvv~~  324 (325)
T cd08253         313 ESGGAIGKVVLD  324 (325)
T ss_pred             HcCCCcceEEEe
Confidence            887777777653

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.24  E-value=1  Score=31.82  Aligned_cols=76  Identities=17%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             cccccCCEEEEEcCC-Cceeee-ehhhhhccceeEEeeecCC------------HHHHHHHHHHHHhCCccc-ceEEEec
Q 040822           48 NFASIAGVYVIVEVP-KEVKFK-TVNLIMEMRTIAGSIVGGG------------TQETKEMVEFCAENGIYP-EIEIIPI  112 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~~~~~~-~~~~~~~~~~i~g~~~~~~------------~~~~~~~~~l~~~~~i~~-~i~v~~~  112 (158)
                      ..++.+|+++.++.+ .. ... ...+..+...+.+.... .            ...+++++++++++.+++ ..+++++
T Consensus       178 ~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~  255 (277)
T cd08255         178 RLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVY-GIGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPF  255 (277)
T ss_pred             HHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeeccc-ccccccccccccccccHHHHHHHHHcCCccccccCccCH
Confidence            346778899988876 32 221 12233344444444322 1            134678889999998875 3478999


Q ss_pred             ccHHHHHHHHHcC
Q 040822          113 QYVNGALERLENR  125 (158)
Q Consensus       113 ~~~~~a~~~~~~~  125 (158)
                      ++++++++.+..+
T Consensus       256 ~~~~~a~~~~~~~  268 (277)
T cd08255         256 EDAPEAYRLLFED  268 (277)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999998765

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.18  E-value=0.26  Score=36.46  Aligned_cols=45  Identities=29%  Similarity=0.430  Sum_probs=36.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      ..+|.++|||++|+|+++|++|++|++||||++.+.. .|+.|..|
T Consensus        52 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~c~~c   96 (358)
T TIGR03451        52 DEFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRA-VCGQCRAC   96 (358)
T ss_pred             ccCCcccccceEEEEEEeCCCCcccCCCCEEEEccCC-CCCCChHH
Confidence            3568999999999999999999999999999875433 45555544

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=88.84  E-value=2.9  Score=29.68  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             ccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCc
Q 040822           49 FASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDV  127 (158)
Q Consensus        49 ~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~  127 (158)
                      .++.+|+++.++.......   .....+..+...........+.+++++++++.+++. .+.+++++++++++.+.....
T Consensus       227 ~l~~~g~~v~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  303 (309)
T cd05289         227 LVKPGGRLVSIAGPPPAEQ---AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHA  303 (309)
T ss_pred             HHhcCcEEEEEcCCCcchh---hhhhccceEEEEEecccHHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCC
Confidence            3456777777765411100   222233333333222024567788889988888754 468999999999999887765


Q ss_pred             ceeEE
Q 040822          128 KYRFV  132 (158)
Q Consensus       128 ~~k~v  132 (158)
                      .+|.+
T Consensus       304 ~~kvv  308 (309)
T cd05289         304 RGKVV  308 (309)
T ss_pred             CCcEe
Confidence            55543

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.69  E-value=3.3  Score=29.62  Aligned_cols=82  Identities=17%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             cccCCEEEEEcCC-Cceeeee----hhhhhccceeEEe-eecCCHHHHHHHHHHHHhCCccc-ceEEEecccHHHHHHHH
Q 040822           50 ASIAGVYVIVEVP-KEVKFKT----VNLIMEMRTIAGS-IVGGGTQETKEMVEFCAENGIYP-EIEIIPIQYVNGALERL  122 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~----~~~~~~~~~i~g~-~~~~~~~~~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~  122 (158)
                      ++..|+++.++.. .......    .........+... ... ....+.++++++.++.+++ ..+++++++++++++.+
T Consensus       230 l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~  308 (319)
T cd08267         230 LKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKP-NAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRL  308 (319)
T ss_pred             cCCCCEEEEeccccccccccccccchhhccccceEEEEEecC-CHHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHH
Confidence            6778899988765 2111111    1111111222222 223 3455778888998888875 44789999999999998


Q ss_pred             HcCCcceeEE
Q 040822          123 ENRDVKYRFV  132 (158)
Q Consensus       123 ~~~~~~~k~v  132 (158)
                      .+....++.+
T Consensus       309 ~~~~~~~~vv  318 (319)
T cd08267         309 KSGRARGKVV  318 (319)
T ss_pred             hcCCCCCcEe
Confidence            8765544543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.43  E-value=3.5  Score=29.83  Aligned_cols=44  Identities=27%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEE
Q 040822           89 QETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFV  132 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~v  132 (158)
                      ..++.++++++++.+++. .+.+++++++++++.+......+|.+
T Consensus       285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  329 (331)
T cd08273         285 QDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIV  329 (331)
T ss_pred             HHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEE
Confidence            446678889999988763 47899999999999988777666765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production

Probab=87.41  E-value=0.76  Score=28.03  Aligned_cols=32  Identities=25%  Similarity=0.278  Sum_probs=27.1

Q ss_pred             cccccccEEEEEeCCCCCCCCCCCEEEecCCc
Q 040822           10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV   41 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~   41 (158)
                      ++|-.++|+|.=-|+..+-.++||+|+...+.
T Consensus        59 I~g~~gSg~I~lNGAAAr~~~~GD~vII~sy~   90 (111)
T cd06919          59 IPGERGSGVICLNGAAARLGQPGDRVIIMAYA   90 (111)
T ss_pred             EEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence            67888899999999888889999999776543

Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.24  E-value=6.7  Score=28.27  Aligned_cols=86  Identities=22%  Similarity=0.364  Sum_probs=54.1

Q ss_pred             ccccCCEEEEEcCCC---cee---------------eeehhhhhccceeEEeeecC---CH----HHHHHHHHHHHhCCc
Q 040822           49 FASIAGVYVIVEVPK---EVK---------------FKTVNLIMEMRTIAGSIVGG---GT----QETKEMVEFCAENGI  103 (158)
Q Consensus        49 ~~~~~g~~v~~g~~~---~~~---------------~~~~~~~~~~~~i~g~~~~~---~~----~~~~~~~~l~~~~~i  103 (158)
                      .++.+|+++.++...   ...               .....+...+.++.+.....   ..    ..+.+++++..++.+
T Consensus       225 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (337)
T cd08275         225 LLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKI  304 (337)
T ss_pred             hhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCC
Confidence            356678888877541   111               11123455666666654320   11    124567778888887


Q ss_pred             ccce-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822          104 YPEI-EIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus       104 ~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ++.. ..+++++++++++.+..+...+|.+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~  336 (337)
T cd08275         305 KPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLT  336 (337)
T ss_pred             CCceeeEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            7543 679999999999998877766777654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=86.88  E-value=6.8  Score=28.02  Aligned_cols=85  Identities=14%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC----HHHH----HHHHHHHHhCCcccc-eEEEecccHHH
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG----TQET----KEMVEFCAENGIYPE-IEIIPIQYVNG  117 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~----~~~~~l~~~~~i~~~-i~v~~~~~~~~  117 (158)
                      .++.+|+++.++..  ....++....+.++..+.+.... .    ....    +.+.++..++.+.+. ...++++++++
T Consensus       232 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (328)
T cd08268         232 ALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLD-EITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVE  310 (328)
T ss_pred             hhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecc-cccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHH
Confidence            34567888877654  22223333234556666665433 2    2222    333444556666653 47799999999


Q ss_pred             HHHHHHcCCcceeEEEE
Q 040822          118 ALERLENRDVKYRFVID  134 (158)
Q Consensus       118 a~~~~~~~~~~~k~vl~  134 (158)
                      +++.+..+...+|.+++
T Consensus       311 ~~~~~~~~~~~~~vv~~  327 (328)
T cd08268         311 AHRYLESGQQIGKIVVT  327 (328)
T ss_pred             HHHHHHcCCCCceEEEe
Confidence            99998877666677653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR00223 panD L-aspartate-alpha-decarboxylase

Probab=86.84  E-value=0.87  Score=28.40  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=27.4

Q ss_pred             cccccccEEEEEeCCCCCCCCCCCEEEecCCc
Q 040822           10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV   41 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~   41 (158)
                      +.|-.++|+|.=-|+..+-.++||+|+...+.
T Consensus        60 I~G~~GSg~I~lNGAAArl~~~GD~VII~sy~   91 (126)
T TIGR00223        60 IAGKRGSRIICVNGAAARCVSVGDIVIIASYV   91 (126)
T ss_pred             EEcCCCCCEEEeCCHHHhcCCCCCEEEEEECC
Confidence            67888999999999988899999999776543

Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=86.40  E-value=5.2  Score=29.31  Aligned_cols=46  Identities=17%  Similarity=0.270  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHhCCcccc-eEEEe--cccHHHHHHHHHcCC-cceeEEEE
Q 040822           89 QETKEMVEFCAENGIYPE-IEIIP--IQYVNGALERLENRD-VKYRFVID  134 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~-i~v~~--~~~~~~a~~~~~~~~-~~~k~vl~  134 (158)
                      ..++++.+++.++.+.+. ...++  +++++++++.+..+. ..+|.+++
T Consensus       289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~  338 (339)
T cd08249         289 VFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVR  338 (339)
T ss_pred             HHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEe
Confidence            345678888889988763 35677  999999999998887 77788764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=86.39  E-value=2  Score=31.34  Aligned_cols=86  Identities=12%  Similarity=0.062  Sum_probs=62.2

Q ss_pred             cccCCEEEEEcCC------Cceee-eehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccHH
Q 040822           50 ASIAGVYVIVEVP------KEVKF-KTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYVN  116 (158)
Q Consensus        50 ~~~~g~~v~~g~~------~~~~~-~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~~  116 (158)
                      ++..||+++.|.-      .+..+ +....+.+++++.+.... ..     +-+..+..+.++++|+..- -...++..+
T Consensus       243 M~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~-d~~d~~~k~ld~l~~~ikegKI~y~edi~~Glen~P  321 (343)
T KOG1196|consen  243 MNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVS-DYLDKYPKFLDFLLPYIKEGKITYVEDIADGLENGP  321 (343)
T ss_pred             hhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEee-chhhhhHHHHHHHHHHHhcCceEEehhHHHHHhccH
Confidence            6778999998854      12122 445677889999998765 32     2246777889999998532 235688899


Q ss_pred             HHHHHHHcCCcceeEEEEeC
Q 040822          117 GALERLENRDVKYRFVIDIG  136 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~vl~~~  136 (158)
                      +|+.-+..++..||.++.+.
T Consensus       322 ~A~vglf~GkNvGKqiv~va  341 (343)
T KOG1196|consen  322 SALVGLFHGKNVGKQLVKVA  341 (343)
T ss_pred             HHHHHHhccCcccceEEEee
Confidence            99999999999999887654

>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase

Probab=85.93  E-value=0.39  Score=29.50  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=23.8

Q ss_pred             cccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822           10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY   40 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~   40 (158)
                      +.|-.++|+|.=-|+..+.+++||+|+...+
T Consensus        60 I~g~~GSg~I~lNGaAArl~~~GD~vII~sy   90 (116)
T PF02261_consen   60 IPGERGSGVICLNGAAARLVQVGDRVIIMSY   90 (116)
T ss_dssp             EEESTTTT-EEEEGGGGGCS-TT-EEEEEEE
T ss_pred             EEccCCCcEEEECCHHHhccCCCCEEEEEEc
Confidence            6778889999999999999999999977654

The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=85.87  E-value=0.33  Score=35.52  Aligned_cols=44  Identities=43%  Similarity=0.625  Sum_probs=36.9

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      +|.++|||++|+|+++|++|+.|++||||++.+.. .|+.|..|+
T Consensus        54 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~c~~c~~c~   97 (339)
T cd08239          54 QGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYV-GCGACRNCR   97 (339)
T ss_pred             CCceeccCceEEEEEECCCCccCCCCCEEEECCCC-CCCCChhhh
Confidence            58999999999999999999999999999876554 566665553

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=85.81  E-value=3.8  Score=35.82  Aligned_cols=86  Identities=14%  Similarity=0.235  Sum_probs=56.3

Q ss_pred             cccCCEEEEEcCC---CceeeeehhhhhccceeEEeee-----cCCHHHHHHHHHHHHhC----Cccc-ceEEEecccHH
Q 040822           50 ASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIV-----GGGTQETKEMVEFCAEN----GIYP-EIEIIPIQYVN  116 (158)
Q Consensus        50 ~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~-----~~~~~~~~~~~~l~~~~----~i~~-~i~v~~~~~~~  116 (158)
                      +..+||..-+|--   .+.++ .+..+.++.+..|...     + ....+.++..|.++|    -++| ..++|+-++++
T Consensus      1645 La~~GRFLEIGKfDLSqNspL-GMavfLkNvsfHGiLLDsvmeg-e~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE 1722 (2376)
T KOG1202|consen 1645 LALHGRFLEIGKFDLSQNSPL-GMAVFLKNVSFHGILLDSVMEG-EEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVE 1722 (2376)
T ss_pred             HHhcCeeeeecceecccCCcc-hhhhhhcccceeeeehhhhhcC-cHHHHHHHHHHHHhhhccCceeccccccccHHHHH
Confidence            4457787777633   11111 2333445555555543     4 455566677776654    3344 45899999999


Q ss_pred             HHHHHHHcCCcceeEEEEeCc
Q 040822          117 GALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      +||+-+..++.+||+++.+..
T Consensus      1723 ~AFRfMasGKHIGKVvikvr~ 1743 (2376)
T KOG1202|consen 1723 DAFRFMASGKHIGKVVIKVRA 1743 (2376)
T ss_pred             HHHHHHhccCccceEEEEEcc
Confidence            999999999999999987643

>PRK05449 aspartate alpha-decarboxylase; Provisional

Probab=85.56  E-value=1  Score=28.12  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             cccccccEEEEEeCCCCCCCCCCCEEEecCCc
Q 040822           10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV   41 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~   41 (158)
                      ++|-.++|+|.=-|+..+-.++||+|+...+.
T Consensus        60 I~g~~GSg~I~lNGAAAr~~~~GD~vII~ay~   91 (126)
T PRK05449         60 IAGERGSGVICLNGAAARLVQVGDLVIIAAYA   91 (126)
T ss_pred             EEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence            67888899999999888889999999766543

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=84.74  E-value=2  Score=31.53  Aligned_cols=46  Identities=24%  Similarity=0.354  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           89 QETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ...+.++++..++.+++. .+++++++++++++.++++...+|.+++
T Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~  351 (352)
T cd08247         305 DWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIK  351 (352)
T ss_pred             HHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence            346678888888888764 4789999999999999887777787754

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]

Probab=84.65  E-value=1.4  Score=26.38  Aligned_cols=26  Identities=38%  Similarity=0.625  Sum_probs=19.0

Q ss_pred             cccccEEEEEeCCCCC---------CCCCCCEEEe
Q 040822           12 GHEIVGAVKEVGSNVK---------CFEVGDRVGV   37 (158)
Q Consensus        12 G~e~~G~V~~vG~~v~---------~~~vGdrV~~   37 (158)
                      +-...|+|+++|++-.         ..++||||..
T Consensus        41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLl   75 (104)
T KOG1641|consen   41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLL   75 (104)
T ss_pred             cccceEEEEEEcCccccCCCCCcCccccCCCEEEe
Confidence            3445699999998632         4789999953

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=84.52  E-value=0.35  Score=35.59  Aligned_cols=42  Identities=48%  Similarity=0.797  Sum_probs=34.5

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF   49 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   49 (158)
                      +|.++|+|++|+|+++|++|++|++||||++.... .|+.|.+
T Consensus        64 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~  105 (351)
T cd08233          64 APVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTI-KCGTCGA  105 (351)
T ss_pred             CCceecccceEEEEEeCCCCCCCCCCCEEEECCCC-CCCCChH
Confidence            68999999999999999999999999999875433 3444443

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=84.05  E-value=2.1  Score=31.83  Aligned_cols=42  Identities=48%  Similarity=0.903  Sum_probs=35.3

Q ss_pred             cccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822           10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      ++|||++|+|+++| .++.|++||||++.+.. +|+.|.+|+.+
T Consensus        58 i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~-~Cg~C~~C~~G   99 (350)
T COG1063          58 ILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNI-PCGHCRYCRAG   99 (350)
T ss_pred             ccCccceEEEEEec-cccCCCCCCEEEECCCc-CCCCChhHhCc
Confidence            99999999999999 77889999999877654 78877766543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=81.56  E-value=1.9  Score=32.91  Aligned_cols=77  Identities=13%  Similarity=0.022  Sum_probs=55.7

Q ss_pred             cccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecCCHH-HHH--HHHHHHHhCCc-cc---ceEE-----Eecc-c
Q 040822           48 NFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQ-ETK--EMVEFCAENGI-YP---EIEI-----IPIQ-Y  114 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-~~~--~~~~l~~~~~i-~~---~i~v-----~~~~-~  114 (158)
                      ..+++++.++.+|.. +.+++...+..++.++.++... ... .++  ..+.++.+|.+ +.   ..+.     ++++ +
T Consensus       277 ~~mk~GgilvnvG~~-~~eId~~~L~~~el~i~g~~~~-~~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q  354 (413)
T cd00401         277 EQMKDGAIVCNIGHF-DVEIDVKGLKENAVEVVNIKPQ-VDRYELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQ  354 (413)
T ss_pred             hcCCCCcEEEEeCCC-CCccCHHHHHhhccEEEEccCC-cceEEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHH
Confidence            356778888888865 4567777788888888888766 432 334  68999999987 42   2244     7888 8


Q ss_pred             HHHHHHHHHcCC
Q 040822          115 VNGALERLENRD  126 (158)
Q Consensus       115 ~~~a~~~~~~~~  126 (158)
                      +.++++.+.+..
T Consensus       355 ~l~a~~l~~~~~  366 (413)
T cd00401         355 VLAQIELWTNRD  366 (413)
T ss_pred             HHHHHHHHhcCC
Confidence            889999887764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=81.31  E-value=0.73  Score=34.04  Aligned_cols=50  Identities=28%  Similarity=0.430  Sum_probs=42.2

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .|.+||.++|||++|+|++||++|+.+|+||+|+.... +.|+.|..|..+
T Consensus        51 ~p~~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~-p~CG~C~~C~sG  100 (366)
T COG1062          51 DPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFT-PECGQCKFCLSG  100 (366)
T ss_pred             CCCCCceecccccccEEEEecCCccccCCCCEEEEccc-CCCCCCchhhCC
Confidence            45669999999999999999999999999999976543 478888876544

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=80.92  E-value=0.44  Score=35.23  Aligned_cols=33  Identities=30%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             CCCccccc--cccEEEEEeCCCCCCCCCCCEEEec
Q 040822            6 LIENCMGH--EIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         6 ~~p~~~G~--e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      .+|+++|+  |++|+|.++|++|++|++||||++.
T Consensus        71 ~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~  105 (348)
T PLN03154         71 LPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI  105 (348)
T ss_pred             CCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec
Confidence            35889997  8899999999999999999999754

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=80.85  E-value=13  Score=27.04  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHhCCcccce-EEE---ecccHHHHHHHHHcCCcceeEEE
Q 040822           90 ETKEMVEFCAENGIYPEI-EII---PIQYVNGALERLENRDVKYRFVI  133 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~i-~v~---~~~~~~~a~~~~~~~~~~~k~vl  133 (158)
                      .+++++++..++.+++.+ ..+   ++++++++++.+..+...+|.++
T Consensus       286 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv  333 (336)
T TIGR02817       286 LLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVL  333 (336)
T ss_pred             HHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEE
Confidence            356788888899887543 344   46889999999988877777764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		2e-11
2cf5_A	357	Crystal Structures Of The Arabidopsis Cinnamyl Alco		5e-10
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		9e-10
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		5e-07
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-04
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-04

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 71  NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXXXXVNGALERLENRDVKYR 130
           NLIM+ R IAGS++GG   ET+EM++FCAE+G            +N A ER+   DVKYR
Sbjct: 301 NLIMKRRAIAGSMIGG-IPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYR 359
Query: 131 FVID 134
           FVID
Sbjct: 360 FVID 363

>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol Dehydrogenases, Atcad5 Length = 357

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 65  VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXXXXVNGALERLEN 124
           ++F T  L++  + I GS +G   +ET+EM+EFC E G            VN A ERLE 
Sbjct: 281 LQFLTPLLMLGRKVITGSFIGS-MKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEK 339
Query: 125 RDVKYRFVIDI-GQHLE 140
            DV+YRFV+D+ G +L+
Sbjct: 340 NDVRYRFVVDVEGSNLD 356

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGXXXXXXXXXX 112
           G  ++V  P K ++    +LI   + +AGS +GG  +ET+EM++F A++           
Sbjct: 276 GKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGG-MKETQEMIDFAAKHNITADIEVIST 334
Query: 113 XXVNGALERLENRDVKYRFVIDIGQHL 139
             +N A+ERL   DV+YRFVID+G  L
Sbjct: 335 DYLNTAMERLAKNDVRYRFVIDVGNTL 361

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
          GHEI G +KEVG  VK F++GD VGVG +VNSC+ C
Sbjct: 63 GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKAC 98

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE +G VKE+G++V   +VGDRV V  +   C  C +
Sbjct: 58 LGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEY 96

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE +G VKE+G++V   +VGDRV V  +   C  C +
Sbjct: 58 LGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEY 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	2e-31
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	4e-15
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	2e-31
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	3e-16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	3e-30
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	4e-15
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	2e-29
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	4e-15
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	1e-28
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	3e-14
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-24
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-13
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-23
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	8e-13
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	5e-23
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-12
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	8e-12
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-09
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	4e-10
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	8e-08
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	4e-10
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-07
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-09
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	5e-09
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	7e-09
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-08
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	1e-08
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-08
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	5e-08
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	5e-08
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	7e-08
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	7e-08
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	9e-08
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-07
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-06
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-05
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-05
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-05
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-05
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	2e-05
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	3e-05
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	3e-05
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	3e-05
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-04
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-04
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-04
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-04
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-04
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-04
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-04
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-04
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-04
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-04
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	3e-04
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	3e-04
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	5e-04

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  114 bits (288), Expect = 2e-31
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  +++ V    ++F T  L++  + I GS +G   +ET+EM+EFC E G+   IE++ +
Sbjct: 269 GKLILMGVINNPLQFLTPLLMLGRKVITGSFIGS-MKETEEMLEFCKEKGLSSIIEVVKM 327

Query: 113 QYVNGALERLENRDVKYRFVIDIG 136
            YVN A ERLE  DV+YRFV+D+ 
Sbjct: 328 DYVNTAFERLEKNDVRYRFVVDVE 351

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 22/38 (57%), Positives = 24/38 (63%)

Query: 10  CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
             GHE+VG V EVGS+V  F VGD VGVG  V  C  C
Sbjct: 66  VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGC 103

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  114 bits (288), Expect = 2e-31
 Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 54  GVYVIVEVPKE-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  ++V  P++ ++    +LI   + +AGS +GG  +ET+EM++F A++ I  +IE+I  
Sbjct: 276 GKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGG-MKETQEMIDFAAKHNITADIEVIST 334

Query: 113 QYVNGALERLENRDVKYRFVIDIG 136
            Y+N A+ERL   DV+YRFVID+G
Sbjct: 335 DYLNTAMERLAKNDVRYRFVIDVG 358

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 23/36 (63%), Positives = 25/36 (69%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
           GHEIVG V EVGS VK   VGD+VGVG  V +C  C
Sbjct: 75  GHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSC 110

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  111 bits (279), Expect = 3e-30
 Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 54  GVYVIVEVPKE--VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           G   +V  P       +  NLIM+ R IAGS++GG   ET+EM++FCAE+GI  +IE+I 
Sbjct: 282 GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG-IPETQEMLDFCAEHGIVADIEMIR 340

Query: 112 IQYVNGALERLENRDVKYRFVIDI 135
              +N A ER+   DVKYRFVID 
Sbjct: 341 ADQINEAYERMLRGDVKYRFVIDN 364

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 10  CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
             GHEIVG V  VG  V+ +  GD VGVG  V+SC+ C
Sbjct: 79  VPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHC 116

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  108 bits (273), Expect = 2e-29
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 54  GVYVIVEVPKEVKFKTVN----LIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEI 109
           G   +V +P       ++    + +  R + GS++GG  +ET+EMV+F  ++ IYPEI++
Sbjct: 259 GDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGG-IKETQEMVDFSIKHNIYPEIDL 317

Query: 110 IPIQYVNGALERLENRDVKYRFVIDIGQHLE 140
           I  + ++ A   L +   K+R+VID+ +  +
Sbjct: 318 ILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD 348

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 69.9 bits (172), Expect = 4e-15
 Identities = 23/38 (60%), Positives = 28/38 (73%)

Query: 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47
            GHEI G +KEVG  VK F++GD VGVG +VNSC+ C
Sbjct: 61 IPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKAC 98

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score =  106 bits (268), Expect = 1e-28
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  V + +P +          ++  +I+ S +G   +E  ++++  +E  I   +E +P+
Sbjct: 270 GRIVSISIPEQHEMLSLKPYGLKAVSISYSALGS-IKELNQLLKLVSEKDIKIWVETLPV 328

Query: 113 QY--VNGALERLENRDVKYRFVID 134
               V+ A ER+E  DV+YRF + 
Sbjct: 329 GEAGVHEAFERMEKGDVRYRFTLV 352

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 67.9 bits (167), Expect = 3e-14
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 12  GHEIVGAVKEVGSNVKC-FEVGDRVGVGPYVNSCQDC 47
           GHEIVG V ++G       +VG RVGVG  V SC +C
Sbjct: 67  GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLEC 103

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 95.7 bits (239), Expect = 2e-24
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 54  GVYVIVEVPKEVKFK--TVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
           G  V+V +P   K      N +++  +I GS VG    +T+E ++F A   +   I+++ 
Sbjct: 263 GTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGN-RADTREALDFFARGLVKSPIKVVG 321

Query: 112 IQYVNGALERLENRDVKYRFVIDI 135
           +  +    E++E   +  R+V+D 
Sbjct: 322 LSTLPEIYEKMEKGQIVGRYVVDT 345

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           GHE  G V  +G NVK +++GD  G+     SC  C +
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEY 102

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 54  GVYVIVEVPKE-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  V+V +P E +     + ++    I GSIVG   ++ +E ++F AE  +   IE+ P+
Sbjct: 255 GACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGT-RKDLQEALQFAAEGKVKTIIEVQPL 313

Query: 113 QYVNGALERLENRDVKYRFVIDIGQ 137
           + +N   +R+    +  R V+ +  
Sbjct: 314 EKINEVFDRMLKGQINGRVVLTLED 338

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 63.3 bits (155), Expect = 8e-13
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHE VG V+EVG  V   +VGDRVG+    ++C  C++
Sbjct: 60 GHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDY 97

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 91.9 bits (229), Expect = 5e-23
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 54  GVYVIVEVPKE-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G   +  +P         +++++  TI GSIVG    + +E ++F A   +   +    +
Sbjct: 257 GTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGT-RSDLQESLDFAAHGDVKATVSTAKL 315

Query: 113 QYVNGALERLENRDVKYRFVIDIGQ 137
             VN    RL    V+ R V+D  +
Sbjct: 316 DDVNDVFGRLREGKVEGRVVLDFSR 340

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHE VG V  VGS V   + GDRVGV    ++C  C  
Sbjct: 62 GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEH 99

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 53  AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
            G  +IV    E++F T+ +I    +  GS+VG    E  E+V    +  +  E++I  +
Sbjct: 278 MGRLIIVGYGGELRFPTIRVISSEVSFEGSLVGN-YVELHELVTLALQGKVRVEVDIHKL 336

Query: 113 QYVNGALERLENRDVKYRFVI 133
             +N  LERLE  +V  R V+
Sbjct: 337 DEINDVLERLEKGEVLGRAVL 357

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE VG ++EV   V+  E GD V + P   +   C  
Sbjct: 77  LGHENVGYIEEVAEGVEGLEKGDPVILHP-AVTDGTCLA 114

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPI 112
           G  ++V +  K V  +  +  +  + + GS  G    + +++V       I P I  +P+
Sbjct: 263 GAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGS-LNDLEDVVRLSESGKIKPYIIKVPL 321

Query: 113 QYVNGALERLENRDVKYRFVI 133
             +N A   L+   V  R VI
Sbjct: 322 DDINKAFTNLDEGRVDGRQVI 342

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE  G + EVG   K  + GD V V         C +
Sbjct: 63 LGHENAGTIVEVGELAK-VKKGDNVVVYA-TWGDLTCRY 99

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHEI G ++EVG  V  +  GD V V P+     +C +
Sbjct: 66  LGHEIAGKIEEVGDEVVGYSKGDLVAVNPW-QGEGNCYY 103

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 54  GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIP 111
           G YV+V +   ++ +    + +      GS+VG    +   ++       + P I + + 
Sbjct: 265 GKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGN-QSDFLGIMRLAEAGKVKPMITKTMK 323

Query: 112 IQYVNGALERLENRDVKYRFVI 133
           ++  N A++ LEN     R V+
Sbjct: 324 LEEANEAIDNLENFKAIGRQVL 345

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHEI G V E GS+V+  ++GD V   P+  +C  C  
Sbjct: 64  LGHEITGEVVEKGSDVELMDIGDLV-SVPFNVACGRCRN 101

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHEI G V E G +V+  ++GD V   P+  +C  C  
Sbjct: 65  LGHEITGEVIEKGRDVENLQIGDLV-SVPFNVACGRCRS 102

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 52.2 bits (126), Expect = 7e-09
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE VG V E+G  V  F VGD V V      C  C+ 
Sbjct: 60 LGHEGVGTVAELGEGVTGFGVGDAVAVYG-PWGCGACHA 97

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 53  AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIP 111
            G   +V +           +I    ++     G    E  E+V       +    E   
Sbjct: 263 DGHISVVGIHAGAHAKVGFFMIPFGASVVTPYWGT-RSELMEVVALARAGRLDIHTETFT 321

Query: 112 IQYVNGALERLENRDVKYRFVI 133
           +     A  RL    ++ R V+
Sbjct: 322 LDEGPAAYRRLREGSIRGRGVV 343

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE VG V EVGS VK F+ GDRV V P +      + 
Sbjct: 57 LGHEAVGEVVEVGSEVKDFKPGDRV-VVPAITPDWRTSE 94

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE  G V E GS V+    G R+   P + SC  C  
Sbjct: 79  LGHEFCGIVVEAGSAVRDIAPGARITGDPNI-SCGRCPQ 116

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 10  CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
            +GHE  G V +VG NVK  + GDRV V P V  C+ C F
Sbjct: 63  VIGHEASGTVVKVGKNVKHLKKGDRVAVEPGV-PCRRCQF 101

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           MGHE+ G V E+G  V+  EVGD V V  ++  C  C  
Sbjct: 65  MGHEVAGEVVEIGPGVEGIEVGDYVSVETHI-VCGKCYA 102

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 49.5 bits (119), Expect = 7e-08
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE  G +  VGS V     GD V   P +  C  C  
Sbjct: 57 LGHEFSGYIDAVGSGVDDLHPGDAVACVPLL-PCFTCPE 94

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 10  CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
            +GHE  G V  V  +VK  +VGDRV + P V  C  C  
Sbjct: 75  VLGHESAGEVIAVHPSVKSIKVGDRVAIEPQV-ICNACEP 113

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 10  CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
            +GHE  G V++VGS+VK  + GDRV + P     ++  F
Sbjct: 66  VLGHEASGTVEKVGSSVKHLKPGDRVAIEPGA-PRENDEF 104

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           GHE  G V+ VG  V+  +VGD V +  ++  C  C  
Sbjct: 61 TGHEFSGVVEAVGPGVRRPQVGDHVSLESHI-VCHACPA 98

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 11  MGHEIVGAVKEVGSNV------KCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE  G V E G         K FE+G+ V     +  C  C  
Sbjct: 95  LGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEML-WCGHCRP 138

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
            GHE  G V+ +G  V     GD+V +  +   C  C  
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKV-IPLFTPQCGKCRV 102

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GH   G V+ VG  V   + GD V +  Y+  C +C F
Sbjct: 64  LGHLGAGIVESVGEGVTKLKAGDTV-IPLYIPQCGECKF 101

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRV---GVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF 67
           +G E  G V   G  V  FEVGD+V       +        ++ I+    ++++PK    
Sbjct: 67  LGREASGTVVAKGKGVTNFEVGDQVAYISNSTF------AQYSKISSQGPVMKLPKGTSD 120

Query: 68  KTVNLIMEMRTIAGSIVGGGT 88
           +       ++  A  ++   T
Sbjct: 121 EE------LKLYAAGLLQVLT 135

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 4/39 (10%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          +GHE +G V+E          GD V        C  C  
Sbjct: 64 LGHEAIGVVEESYHGFS---QGDLVMPVNRR-GCGICRN 98

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE  G V+ VG  V  F+ G++V +  +++ C +C F
Sbjct: 66  LGHEGAGIVESVGPGVTEFQPGEKV-IPLFISQCGECRF 103

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE  G V+ VG  V  F+ GD+V +  +   C+ C  
Sbjct: 65  LGHECAGIVESVGPGVTNFKPGDKV-IPFFAPQCKRCKL 102

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
           +GHE VG V+ +G+ V C + GD+V +  +V  C  C  
Sbjct: 66  LGHEAVGVVESIGAGVTCVKPGDKV-IPLFVPQCGSCRA 103

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 11  MGHEIVGAVKEVGSNVK-----CFEVGDRVGVGPYVNSCQDCNF 49
           +GHE  G V EV    +       + GD + V     +C +C +
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLI-VWNRGITCGECYW 117

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN-SCQDCNF 49
          +GHE VG V  V  N    E GD V        +     +
Sbjct: 61 LGHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEY 98

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
           G +  G + +VG+ V    +G RV
Sbjct: 62 PGVDGAGVIVKVGAKVDSKMLGRRV 86

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRV 35
           G+E +  V +VGSNV   E GD V
Sbjct: 77  GNEGLFEVIKVGSNVSSLEAGDWV 100

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 12  GHEIVGAVKEVGSNVKCFEVGDRV 35
           G+E V  V  VGSNV   + GD V
Sbjct: 89  GNEGVAQVVAVGSNVTGLKPGDWV 112

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRV---GVGPYVNSCQDCNFA--SIAGVYVIVEVPKEV 65
           +G +  G V  VGS+V   +VGDRV          +     F+  ++    V  ++PK +
Sbjct: 66  LGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGL 125

Query: 66  KF 67
            F
Sbjct: 126 SF 127

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
          +G + +G V+ VG+ V  F  GD V
Sbjct: 63 LGFDAIGVVESVGNEVTMFNQGDIV 87

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVG 36
          +G E  G V+ VG  V  F+VGDRV 
Sbjct: 61 LGAEGAGVVEAVGDEVTRFKVGDRVA 86

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 8   ENCMGHEIVGAVKEVGSNVKCFEVGDRV 35
              +G E  G V E G  V     GDRV
Sbjct: 265 VASLGSEGAGVVVETGPGVTGLAPGDRV 292

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRVG 36
          +G E  G V +VGS VK  + GDRV 
Sbjct: 61 LGTEAAGIVSKVGSGVKHIKAGDRVV 86

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 10 CMGHEIVGAVKEVGSNVKCFEVGDRVG 36
           +G E    V+EVG  V  F VG+RV 
Sbjct: 63 VVGFEAAAVVEEVGPGVTDFTVGERVC 89

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRV 35
           +G++  G V  VG +V  F  GD V
Sbjct: 85  IGYDAAGIVSAVGPDVTLFRPGDEV 109

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 12 GHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49
          GHE  G ++ +G NV   +VGD   V      C  C  
Sbjct: 64 GHEGSGIIEAIGPNVTELQVGDH--VVLSYGYCGKCTQ 99

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 11 MGHEIVGAVKEVGSNVKCFEVGDRV 35
          +G++  G V E+GS+V    +GD+V
Sbjct: 71 LGYDFSGEVIELGSDVNNVNIGDKV 95

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 11  MGHEIVGAVKEVGSNVKCFEVGDRV 35
           +G ++ G V E G +VK F+ GD V
Sbjct: 98  LGRDVSGVVMECGLDVKYFKPGDEV 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.88
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.8
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.77
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.77
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.76
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.74
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.74
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.72
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.72
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.72
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.71
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.7
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.69
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.68
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.67
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.67
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.66
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.66
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.65
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.65
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.65
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.64
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.64
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.64
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.64
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.63
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.63
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.63
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.63
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.62
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.62
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.62
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.61
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.61
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.61
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.6
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.6
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.6
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.6
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.59
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.58
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.58
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.57
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.57
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.57
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.56
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.56
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.56
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.52
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.52
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.51
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.49
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.46
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.46
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.44
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.44
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.43
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.42
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.42
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.41
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.35
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.33
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.33
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.31
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.28
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.19
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.1
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.5
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.17
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	98.15
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	98.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.99
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.99
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.94
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.94
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.83
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.03
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.46
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.06
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	94.34
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.12
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.87
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	93.83
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.82
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.27
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.69
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	92.55
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.1
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	91.9
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	91.7
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.64
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	91.48
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	91.44
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	91.19
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	91.17
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	91.1
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.21
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	89.83
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	89.74
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	89.68
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	87.85
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	87.39
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	87.19
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	85.06
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	84.19
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	84.09
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	83.98
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	83.21
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	82.83
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	82.5
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	81.61
1vc3_B	96	L-aspartate-alpha-decarboxylase heavy chain; tetra	81.34
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	81.16
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	81.07
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	80.88
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	80.78
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	80.66
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	80.63
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	80.63
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	80.5

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.88  E-value=5.2e-22  Score=143.94  Aligned_cols=87  Identities=24%  Similarity=0.422  Sum_probs=78.1

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcc
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVK  128 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~  128 (158)
                      ++++|+++.++.+ ....++...++.+++++.++..+ +..++++++++++++.++++++++++++++++|+.+++++..
T Consensus       253 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~~~-~~~~~~~~~~l~~~g~i~p~~~~~~l~~~~~A~~~l~~g~~~  331 (348)
T 4eez_A          253 LKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVG-TRLDLAEAFQFGAEGKVKPIVATRKLEEINDIIDEMKAGKIE  331 (348)
T ss_dssp             EEEEEEEEECCCCSCEEEECHHHHHHSCCEEEECCSC-CHHHHHHHHHHHHTTSCCCCEEEECGGGHHHHHHHHHTTCCS
T ss_pred             ecCCceEEEEeccCCCCccCHHHHHhCCeEEEEEecC-CHHHHHHHHHHHHcCCCEEEEEEEeHHHHHHHHHHHHCCCCc
Confidence            4567888888888 66777888888999999999999 999999999999999999988999999999999999999999


Q ss_pred             eeEEEEeCc
Q 040822          129 YRFVIDIGQ  137 (158)
Q Consensus       129 ~k~vl~~~~  137 (158)
                      +|.||+|.+
T Consensus       332 GKvVl~~sk  340 (348)
T 4eez_A          332 GRMVIDFTK  340 (348)
T ss_dssp             SEEEEECC-
T ss_pred             cEEEEEccc
Confidence            999998864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.80  E-value=8.8e-19  Score=126.67  Aligned_cols=86  Identities=23%  Similarity=0.400  Sum_probs=75.4

Q ss_pred             cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcc
Q 040822           50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVK  128 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~  128 (158)
                      ++++|+++.++.+ ....++...++.+++++.++..+ +..++++++++++++.+++.++.+++++++++++.++++...
T Consensus       253 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~  331 (340)
T 3s2e_A          253 VRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVG-TRSDLQESLDFAAHGDVKATVSTAKLDDVNDVFGRLREGKVE  331 (340)
T ss_dssp             EEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECCSC-CHHHHHHHHHHHHTTSCCCCEEEECGGGHHHHHHHHHTTCCC
T ss_pred             hccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEecC-CHHHHHHHHHHHHhCCCCceEEEEeHHHHHHHHHHHHcCCCc
Confidence            4457788888877 66677777888899999999988 889999999999999999988889999999999999999988


Q ss_pred             eeEEEEeC
Q 040822          129 YRFVIDIG  136 (158)
Q Consensus       129 ~k~vl~~~  136 (158)
                      +|.++++.
T Consensus       332 Gkvvv~~~  339 (340)
T 3s2e_A          332 GRVVLDFS  339 (340)
T ss_dssp             SEEEEECC
T ss_pred             eEEEEecC
Confidence            99998764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.77  E-value=1.3e-17  Score=120.61  Aligned_cols=86  Identities=26%  Similarity=0.487  Sum_probs=70.7

Q ss_pred             ccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcce
Q 040822           51 SIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKY  129 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~  129 (158)
                      +++|+++.++.+ ....++...++.++.++.++..+ +..++++++++++++.+++.++++++++++++++.++++...+
T Consensus       252 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~g  330 (339)
T 1rjw_A          252 RRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVG-TRKDLQEALQFAAEGKVKTIIEVQPLEKINEVFDRMLKGQING  330 (339)
T ss_dssp             EEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSC-CHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSS
T ss_pred             hcCCEEEEecccCCCCccCHHHHHhCCcEEEEeccC-CHHHHHHHHHHHHcCCCCccEEEEcHHHHHHHHHHHHcCCCce
Confidence            346677777766 44556666677788999998887 7888999999999999998888999999999999998887788


Q ss_pred             eEEEEeCc
Q 040822          130 RFVIDIGQ  137 (158)
Q Consensus       130 k~vl~~~~  137 (158)
                      |.++.+.+
T Consensus       331 Kvvi~~~~  338 (339)
T 1rjw_A          331 RVVLTLED  338 (339)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCC
Confidence            99887654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.77  E-value=1.1e-17  Score=121.20  Aligned_cols=88  Identities=32%  Similarity=0.639  Sum_probs=72.7

Q ss_pred             ccCCEEEEEcCC--Ccee-eeehhhh-hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCC
Q 040822           51 SIAGVYVIVEVP--KEVK-FKTVNLI-MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRD  126 (158)
Q Consensus        51 ~~~g~~v~~g~~--~~~~-~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~  126 (158)
                      +++|+++.+|.+  .... ++...++ .+++++.++..+ +..++++++++++++.+++.++++++++++++|+.++++.
T Consensus       256 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~  334 (348)
T 3two_A          256 TYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIG-GIKETQEMVDFSIKHNIYPEIDLILGKDIDTAYHNLTHGK  334 (348)
T ss_dssp             EEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSC-CHHHHHHHHHHHHHTTCCCCEEEECGGGHHHHHHHHHTTC
T ss_pred             hcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecC-CHHHHHHHHHHHHhCCCCceEEEEEHHHHHHHHHHHHcCC
Confidence            345677777655  2333 5656666 889999999988 8899999999999999998889999999999999999998


Q ss_pred             cceeEEEEeCccc
Q 040822          127 VKYRFVIDIGQHL  139 (158)
Q Consensus       127 ~~~k~vl~~~~~~  139 (158)
                      ..+|.++++.+.+
T Consensus       335 ~~gKvVi~~~~~~  347 (348)
T 3two_A          335 AKFRYVIDMKKSF  347 (348)
T ss_dssp             CCSEEEEEGGGCC
T ss_pred             CceEEEEecCCcC
Confidence            8899999886543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.4e-17  Score=119.50  Aligned_cols=85  Identities=24%  Similarity=0.425  Sum_probs=70.1

Q ss_pred             ccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcc
Q 040822           51 SIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVK  128 (158)
Q Consensus        51 ~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~  128 (158)
                      +++|+++.++.+  ....++...++.++.++.++..+ +..++++++++++++.+++.+++|++++++++|+.++++...
T Consensus       260 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~  338 (347)
T 2hcy_A          260 RANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVG-NRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIV  338 (347)
T ss_dssp             EEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCC-CHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCS
T ss_pred             hcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCC-CHHHHHHHHHHHHhCCCccceEEEcHHHHHHHHHHHHcCCcc
Confidence            446777777765  34556666777788999998887 788899999999999999888899999999999999888777


Q ss_pred             eeEEEEeC
Q 040822          129 YRFVIDIG  136 (158)
Q Consensus       129 ~k~vl~~~  136 (158)
                      +|.++.+.
T Consensus       339 gKvvv~~~  346 (347)
T 2hcy_A          339 GRYVVDTS  346 (347)
T ss_dssp             SEEEEESC
T ss_pred             eeEEEecC
Confidence            89988764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.74  E-value=4e-17  Score=119.00  Aligned_cols=84  Identities=21%  Similarity=0.244  Sum_probs=70.8

Q ss_pred             cccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCC
Q 040822           50 ASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRD  126 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~  126 (158)
                      ++++|+++.++.+ . ...++...++.+++++.++..+ ....+++++++++++.+++.+ +++++++++++|+.++++.
T Consensus       277 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~  355 (363)
T 3uog_A          277 VAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVG-HRRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP  355 (363)
T ss_dssp             EEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCC-CHHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC
T ss_pred             hhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecC-CHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC
Confidence            4457788888876 3 3566777788899999999988 888999999999999998765 7899999999999999888


Q ss_pred             cceeEEEEe
Q 040822          127 VKYRFVIDI  135 (158)
Q Consensus       127 ~~~k~vl~~  135 (158)
                       .+|.++++
T Consensus       356 -~gKvvi~~  363 (363)
T 3uog_A          356 -FGKVVIEF  363 (363)
T ss_dssp             -SBEEEEEC
T ss_pred             -CccEEEeC
Confidence             88988764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.74  E-value=5e-17  Score=118.07  Aligned_cols=85  Identities=14%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             cccCCEEEEEcCC--Ccee-eeehhhhhccceeEEeeecCCHHH----------HHHHHHHHHhCCcccce-EEEecccH
Q 040822           50 ASIAGVYVIVEVP--KEVK-FKTVNLIMEMRTIAGSIVGGGTQE----------TKEMVEFCAENGIYPEI-EIIPIQYV  115 (158)
Q Consensus        50 ~~~~g~~v~~g~~--~~~~-~~~~~~~~~~~~i~g~~~~~~~~~----------~~~~~~l~~~~~i~~~i-~v~~~~~~  115 (158)
                      ++++|+++.++.+  .... ++...++.++.++.++..+ ....          +++++++++++.+++.+ ++++++++
T Consensus       255 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~  333 (353)
T 4dup_A          255 LAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMR-PRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDV  333 (353)
T ss_dssp             EEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCST-TSCHHHHHHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGH
T ss_pred             hccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEecc-ccchhhhHHHHHHHHHHHHHHHHCCCccCCcceEEeHHHH
Confidence            3456788888766  2333 6777788889999998876 4332          57789999999998765 78999999


Q ss_pred             HHHHHHHHcCCcceeEEEEe
Q 040822          116 NGALERLENRDVKYRFVIDI  135 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl~~  135 (158)
                      +++++.++++...+|.++++
T Consensus       334 ~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          334 ADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             HHHHHHHHHTCCSSEEEEEC
T ss_pred             HHHHHHHHhCCCCceEEEeC
Confidence            99999999988888988754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.72  E-value=4.1e-17  Score=118.10  Aligned_cols=85  Identities=13%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             cccCCEEEEEcCC-Cceee---eehhhhhccceeEEeeecC----CHHHHHHHHHHHHhCCcc--cce-EEEecccHHHH
Q 040822           50 ASIAGVYVIVEVP-KEVKF---KTVNLIMEMRTIAGSIVGG----GTQETKEMVEFCAENGIY--PEI-EIIPIQYVNGA  118 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~~~---~~~~~~~~~~~i~g~~~~~----~~~~~~~~~~l~~~~~i~--~~i-~v~~~~~~~~a  118 (158)
                      ++++|++++++.+ .+..+   +...++.+++++.|++...    ...+++++++|++++.++  +++ ++|+++++++|
T Consensus       250 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A  329 (346)
T 4a2c_A          250 AGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQA  329 (346)
T ss_dssp             CCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHH
T ss_pred             ecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHH
Confidence            4568899998877 44333   3455677899999986531    245688999999999885  445 78999999999


Q ss_pred             HHHHHcCCcceeEEEE
Q 040822          119 LERLENRDVKYRFVID  134 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl~  134 (158)
                      ++.++++...+|.+|.
T Consensus       330 ~~~l~~~~~~GKvVl~  345 (346)
T 4a2c_A          330 VRDIARNAMPGKVLLI  345 (346)
T ss_dssp             HHHHTTSCCCSEEEEC
T ss_pred             HHHHHcCCCceEEEEE
Confidence            9999998888998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.72  E-value=1e-16  Score=116.07  Aligned_cols=83  Identities=17%  Similarity=0.163  Sum_probs=70.4

Q ss_pred             cccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCc
Q 040822           50 ASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDV  127 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~  127 (158)
                      ++++|+++.++.+ . ...++. .++.++.++.++..+ +..++++++++++++.++++++++++++++++|+.++++..
T Consensus       260 l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~  337 (345)
T 3jv7_A          260 VAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWG-TRSELMEVVALARAGRLDIHTETFTLDEGPAAYRRLREGSI  337 (345)
T ss_dssp             EEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSC-CHHHHHHHHHHHHTTCCCCCEEEECSTTHHHHHHHHHHTCC
T ss_pred             HhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecC-CHHHHHHHHHHHHcCCCceEEEEEcHHHHHHHHHHHHcCCC
Confidence            4457788888776 3 555664 667788899999888 88899999999999999998899999999999999999998


Q ss_pred             ceeEEEE
Q 040822          128 KYRFVID  134 (158)
Q Consensus       128 ~~k~vl~  134 (158)
                      .+|.++.
T Consensus       338 ~Gkvvv~  344 (345)
T 3jv7_A          338 RGRGVVV  344 (345)
T ss_dssp             SSEEEEC
T ss_pred             ceeEEeC
Confidence            8999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.72  E-value=1.7e-16  Score=115.48  Aligned_cols=85  Identities=39%  Similarity=0.786  Sum_probs=67.6

Q ss_pred             ccCCEEEEEcCC-Ccee-eeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcc
Q 040822           51 SIAGVYVIVEVP-KEVK-FKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVK  128 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~~~-~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~  128 (158)
                      +++|+++.++.+ .+.. ++.. ++.+++++.++..+ ...++++++++++++.+++.++++++++++++|+.++++...
T Consensus       266 ~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~  343 (357)
T 2cf5_A          266 KLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIG-SMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVR  343 (357)
T ss_dssp             EEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSC-CHHHHHHHHHHHHHTTCCCCEEEEEGGGHHHHHHHHHTTCSS
T ss_pred             ccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccC-CHHHHHHHHHHHHcCCCCCceEEEeHHHHHHHHHHHHCCCCc
Confidence            345666666655 3333 4444 66778889888877 788899999999999999877999999999999999988878


Q ss_pred             eeEEEEeCc
Q 040822          129 YRFVIDIGQ  137 (158)
Q Consensus       129 ~k~vl~~~~  137 (158)
                      +|.++.+.+
T Consensus       344 gKvvi~~~~  352 (357)
T 2cf5_A          344 YRFVVDVEG  352 (357)
T ss_dssp             SEEEEETTS
T ss_pred             eEEEEeCCc
Confidence            899987754

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.71  E-value=1.4e-16  Score=116.24  Aligned_cols=86  Identities=42%  Similarity=0.773  Sum_probs=69.1

Q ss_pred             ccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcce
Q 040822           51 SIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKY  129 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~  129 (158)
                      +++|+++.++.+ ....++...++.+++++.++..+ ...++++++++++++.+++.+++|++++++++|+.++++...+
T Consensus       273 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~g  351 (366)
T 1yqd_A          273 KSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIG-GMKETQEMIDFAAKHNITADIEVISTDYLNTAMERLAKNDVRY  351 (366)
T ss_dssp             EEEEEEEECCCCSSCEEECHHHHHTTTCEEEECCSC-CHHHHHHHHHHHHHTTCCCCEEEECGGGHHHHHHHHHTTCCSS
T ss_pred             hcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEecCC-CHHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHHHHHcCCcce
Confidence            335666666655 44455556667788889888877 7788899999999999998778999999999999999888788


Q ss_pred             eEEEEeCc
Q 040822          130 RFVIDIGQ  137 (158)
Q Consensus       130 k~vl~~~~  137 (158)
                      |.++.+.+
T Consensus       352 Kvvl~~~~  359 (366)
T 1yqd_A          352 RFVIDVGN  359 (366)
T ss_dssp             EEEECHHH
T ss_pred             EEEEEccc
Confidence            99987654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.70  E-value=3.1e-16  Score=114.54  Aligned_cols=86  Identities=47%  Similarity=0.736  Sum_probs=67.6

Q ss_pred             cccCCEEEEEcCC-Cce-eeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCc
Q 040822           50 ASIAGVYVIVEVP-KEV-KFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDV  127 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~  127 (158)
                      ++++|+++.++.+ ... .++...++.+++++.++..+ ...++++++++++++.+++.++.+++++++++++.++++..
T Consensus       278 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~  356 (369)
T 1uuf_A          278 LKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG-GIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDV  356 (369)
T ss_dssp             EEEEEEEEECCCC-------CHHHHHTTTCEEEECCSC-CHHHHHHHHHHHHHHTCCCCEEEECGGGHHHHHHHHHTTCS
T ss_pred             hccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecC-CHHHHHHHHHHHHhCCCCcceEEEcHHHHHHHHHHHHcCCC
Confidence            3446777777766 333 45556677788999998887 78889999999999999987888999999999999988877


Q ss_pred             ceeEEEEeC
Q 040822          128 KYRFVIDIG  136 (158)
Q Consensus       128 ~~k~vl~~~  136 (158)
                      .+|.++.+.
T Consensus       357 ~gKvvi~~~  365 (369)
T 1uuf_A          357 KYRFVIDNR  365 (369)
T ss_dssp             SSEEEEEGG
T ss_pred             ceEEEEecC
Confidence            889988764

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.69  E-value=3.6e-16  Score=113.10  Aligned_cols=84  Identities=17%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             ccCCEEEEEcCC-Cc-eeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCc
Q 040822           51 SIAGVYVIVEVP-KE-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDV  127 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~  127 (158)
                      +++|+++.++.+ .. ..++...++.+++++.++..+ ....+++++++++++.+++.+ ++|++++++++|+.++++..
T Consensus       256 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~  334 (343)
T 2eih_A          256 ANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMA-SKSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRV  334 (343)
T ss_dssp             EEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSC-CGGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCS
T ss_pred             ccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCc-cHHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCC
Confidence            345677777655 22 235555667788899888766 677789999999999998765 79999999999999988877


Q ss_pred             ceeEEEEe
Q 040822          128 KYRFVIDI  135 (158)
Q Consensus       128 ~~k~vl~~  135 (158)
                      .+|.++.+
T Consensus       335 ~gKvvv~~  342 (343)
T 2eih_A          335 FGKVVLQV  342 (343)
T ss_dssp             SSEEEEEC
T ss_pred             ceEEEEec
Confidence            78988754

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.68  E-value=8.1e-16  Score=111.53  Aligned_cols=68  Identities=18%  Similarity=0.355  Sum_probs=52.8

Q ss_pred             hhhhhccceeEEeeecCC-----------HHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEEeCc
Q 040822           70 VNLIMEMRTIAGSIVGGG-----------TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus        70 ~~~~~~~~~i~g~~~~~~-----------~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      ..++.++.++.+.... .           ...+++++++++++.+++.+ +++++++++++++.++++...+|.++++.+
T Consensus       266 ~~l~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~  344 (349)
T 4a27_A          266 IKLYEENKVIAGFSLL-NLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEK  344 (349)
T ss_dssp             HHHHHHTCEEEEECHH-HHHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTC
T ss_pred             HHHhhcCceEEEEeeh-heeccccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            3344556666666542 1           44578899999999999866 789999999999999998888999988765


Q ss_pred             c
Q 040822          138 H  138 (158)
Q Consensus       138 ~  138 (158)
                      +
T Consensus       345 ~  345 (349)
T 4a27_A          345 T  345 (349)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.67  E-value=6.4e-16  Score=112.59  Aligned_cols=84  Identities=8%  Similarity=0.056  Sum_probs=62.5

Q ss_pred             ccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--cce-EEEecccHHHHHHHHHcC-
Q 040822           51 SIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--PEI-EIIPIQYVNGALERLENR-  125 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~~i-~v~~~~~~~~a~~~~~~~-  125 (158)
                      +++|+++.+|.+ ....++...++.+++++.++..+  ...+++++++++++.++  +.+ ++|++++++++|+.++++ 
T Consensus       274 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~  351 (363)
T 3m6i_A          274 KFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRY--CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPK  351 (363)
T ss_dssp             CTTCEEEECCCCCSCCCCCHHHHHHHTCEEEECCSC--SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGG
T ss_pred             cCCCEEEEEccCCCCccccHHHHHhcCcEEEEccCC--HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccC
Confidence            446777777766 44455666677777888877654  45578899999999984  444 799999999999999887 


Q ss_pred             CcceeEEEEeC
Q 040822          126 DVKYRFVIDIG  136 (158)
Q Consensus       126 ~~~~k~vl~~~  136 (158)
                      ...+|.+++..
T Consensus       352 ~~~~Kvvi~~~  362 (363)
T 3m6i_A          352 TGAIKVQIQSL  362 (363)
T ss_dssp             GCCSEEEEECC
T ss_pred             CCeEEEEEecC
Confidence            45678877653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.67  E-value=1.4e-15  Score=109.66  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             cccCCEEEEEcCC-Cc-eeeeehhhhhccceeEEeeecC---CHHH----HHHHHHHHHhCCcccce-EEEecccHHHHH
Q 040822           50 ASIAGVYVIVEVP-KE-VKFKTVNLIMEMRTIAGSIVGG---GTQE----TKEMVEFCAENGIYPEI-EIIPIQYVNGAL  119 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~-~~~~~~~~~~~~~~i~g~~~~~---~~~~----~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~  119 (158)
                      ++++|+++.+|.+ .. ..++...+..+++++.+...+.   ...+    +++++++++++.+++.+ +++++++++++|
T Consensus       237 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~  316 (334)
T 3qwb_A          237 LKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAA  316 (334)
T ss_dssp             EEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHH
T ss_pred             hccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHH
Confidence            3456777777766 32 3456666677788887654320   2333    36789999999999755 799999999999


Q ss_pred             HHHHcCCcceeEEEEeC
Q 040822          120 ERLENRDVKYRFVIDIG  136 (158)
Q Consensus       120 ~~~~~~~~~~k~vl~~~  136 (158)
                      +.++++...+|.++.+.
T Consensus       317 ~~~~~~~~~gKvvi~~~  333 (334)
T 3qwb_A          317 ADIESRKTVGKLVLEIP  333 (334)
T ss_dssp             HHHHTTCCCBEEEEECC
T ss_pred             HHHHhCCCceEEEEecC
Confidence            99999988899998764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.66  E-value=1.1e-15  Score=110.52  Aligned_cols=82  Identities=18%  Similarity=0.281  Sum_probs=57.1

Q ss_pred             ccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCH---------HHHHHHHHHHHhCCcccce-EEEecccHHHH
Q 040822           51 SIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGT---------QETKEMVEFCAENGIYPEI-EIIPIQYVNGA  118 (158)
Q Consensus        51 ~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~---------~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a  118 (158)
                      +++|+++.++.+ . ...++...++.+++++.++..+ ..         ..+++++++++++ +++.+ +++++++++++
T Consensus       248 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~A  325 (342)
T 4eye_A          248 ASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWG-EFLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQA  325 (342)
T ss_dssp             EEEEEEEEC----------CCCCGGGTTCEEEECCHH-HHHHHCTTHHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHHH
T ss_pred             cCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehh-hhhhcCHHHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHHH
Confidence            345666666654 2 2234455566778888887654 32         3467889999999 88765 78999999999


Q ss_pred             HHHHHcCCcceeEEEE
Q 040822          119 LERLENRDVKYRFVID  134 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl~  134 (158)
                      ++.++++...+|.++.
T Consensus       326 ~~~~~~~~~~gKvvl~  341 (342)
T 4eye_A          326 LQDFADGKVYGKMVLV  341 (342)
T ss_dssp             HHHHHTTCCCSEEEEE
T ss_pred             HHHHHhCCCCceEEEe
Confidence            9999999888898875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.66  E-value=1.4e-15  Score=109.05  Aligned_cols=61  Identities=21%  Similarity=0.240  Sum_probs=49.1

Q ss_pred             hccceeEEee-ecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822           74 MEMRTIAGSI-VGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus        74 ~~~~~i~g~~-~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                      .++.++.+.. .. ...++++++++++++.+++.+ +++++++++++|+.++++...+|.++++
T Consensus       258 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  320 (321)
T 3tqh_A          258 QKHRRAFGLLKQF-NIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFKV  320 (321)
T ss_dssp             HTTCEEECCCCCC-CHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             hcceEEEEEecCC-CHHHHHHHHHHHHCCCcccccccEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence            3455666543 23 567788999999999999755 7999999999999999998889998765

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.65  E-value=3.9e-15  Score=108.34  Aligned_cols=70  Identities=26%  Similarity=0.397  Sum_probs=58.0

Q ss_pred             eeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEeccc--HHHHHHHHHcCCcceeEEEEeCc
Q 040822           67 FKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQY--VNGALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus        67 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~--~~~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      ++...++.+++++.++..+ +...+++++++++++.+++.++++++++  ++++|+.++++...+|.++.+.+
T Consensus       284 ~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~  355 (360)
T 1piw_A          284 LSLKPYGLKAVSISYSALG-SIKELNQLLKLVSEKDIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTLVGYD  355 (360)
T ss_dssp             EEECGGGCBSCEEEECCCC-CHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHHHHTCCSSEEEEECCH
T ss_pred             cCHHHHHhCCeEEEEEecC-CHHHHHHHHHHHHhCCCcceEEEEeccHhHHHHHHHHHHCCCCceEEEEecCc
Confidence            3344455677788887777 7788999999999999998779999999  99999999888878899987754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.65  E-value=2.6e-15  Score=108.78  Aligned_cols=83  Identities=14%  Similarity=0.089  Sum_probs=63.4

Q ss_pred             ccCCEEEEEcCC-Cceeeee-hhhhhccceeEEeeecCC-HHHHHHHHHHHHhCCc--ccce-EEEe-cccHHHHHHHHH
Q 040822           51 SIAGVYVIVEVP-KEVKFKT-VNLIMEMRTIAGSIVGGG-TQETKEMVEFCAENGI--YPEI-EIIP-IQYVNGALERLE  123 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~~~~~~-~~~~~~~~~i~g~~~~~~-~~~~~~~~~l~~~~~i--~~~i-~v~~-~~~~~~a~~~~~  123 (158)
                      +++|+++.++.+ ....++. ..++.+++++.++..+ . ..++++++++++++.+  ++.+ ++|+ +++++++++.++
T Consensus       258 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~  336 (348)
T 2d8a_A          258 TPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGR-HLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMR  336 (348)
T ss_dssp             EEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECCCC-CSHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHH
T ss_pred             hcCCEEEEEccCCCCcccCchHHHHhCCcEEEEecCC-CcHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHh
Confidence            446677777766 4445555 5667788899888766 6 7788999999999996  4555 7899 999999999997


Q ss_pred             cCCcceeEEEEe
Q 040822          124 NRDVKYRFVIDI  135 (158)
Q Consensus       124 ~~~~~~k~vl~~  135 (158)
                      + ...+|.++.+
T Consensus       337 ~-~~~gKvvi~~  347 (348)
T 2d8a_A          337 A-GKTGKVVFML  347 (348)
T ss_dssp             T-TCCSEEEEEC
T ss_pred             C-CCceEEEEee
Confidence            6 5567888754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.65  E-value=6.7e-15  Score=106.80  Aligned_cols=85  Identities=14%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             cccCCEEEEEcCCCceeeeehhhhhccceeEEeeecC-CHHHHH----HHHHHHHhCCcccce-EEEecccHHHHHHH-H
Q 040822           50 ASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGG-GTQETK----EMVEFCAENGIYPEI-EIIPIQYVNGALER-L  122 (158)
Q Consensus        50 ~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~-~~~~~~----~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~-~  122 (158)
                      ++++|+++.++.+....++...++.++.++.++.... ...+++    .+.++++++.+++.+ ++|+++++++|++. +
T Consensus       259 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~  338 (351)
T 1yb5_A          259 LSHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENII  338 (351)
T ss_dssp             EEEEEEEEECCCCSCEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHHHHHHH
T ss_pred             ccCCCEEEEEecCCCCccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHHHHHHH
Confidence            3446777777655444555566677788888874320 334444    345577788888765 78999999999998 5


Q ss_pred             HcCCcceeEEEE
Q 040822          123 ENRDVKYRFVID  134 (158)
Q Consensus       123 ~~~~~~~k~vl~  134 (158)
                      +.+...+|.++.
T Consensus       339 ~~~~~~gKvvi~  350 (351)
T 1yb5_A          339 HGSGATGKMILL  350 (351)
T ss_dssp             HSSCCSSEEEEE
T ss_pred             HhCCCCeEEEEe
Confidence            555667888864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.64  E-value=5e-15  Score=107.67  Aligned_cols=82  Identities=13%  Similarity=0.104  Sum_probs=57.4

Q ss_pred             cCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCH----------HHHHHHHHHHHhCCcccce-EEEecccHHHH
Q 040822           52 IAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGT----------QETKEMVEFCAENGIYPEI-EIIPIQYVNGA  118 (158)
Q Consensus        52 ~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~----------~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a  118 (158)
                      ++|+++.++..  .+..++...+..+++++.++..+ ..          ..+++++++++++.+++.+ ++|++++++++
T Consensus       262 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A  340 (357)
T 1zsy_A          262 RGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLS-QWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSA  340 (357)
T ss_dssp             TTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHH-HHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHH
T ss_pred             CCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcc-hhcccCCHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHH
Confidence            35566665532  23344444555667777776543 21          2357889999999998754 89999999999


Q ss_pred             HHHHHcCCcceeEEEE
Q 040822          119 LERLENRDVKYRFVID  134 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl~  134 (158)
                      ++.++++...+|.++.
T Consensus       341 ~~~~~~~~~~gKvvl~  356 (357)
T 1zsy_A          341 LEASMKPFISSKQILT  356 (357)
T ss_dssp             HHHHTSSSCSSEEEEE
T ss_pred             HHHHHhCCCCCcEEEe
Confidence            9999888777888875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.64  E-value=9.8e-15  Score=109.03  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             CCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcce
Q 040822           53 AGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKY  129 (158)
Q Consensus        53 ~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~  129 (158)
                      +|+++.++.+  ....++...+..++.++.++..+ ...++++++++++++.+++.+ ++|++++++++|+.+.++...+
T Consensus       329 ~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~G  407 (447)
T 4a0s_A          329 GGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGA-NHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVG  407 (447)
T ss_dssp             TCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSC-CHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSS
T ss_pred             CCEEEEEecCCCcccccCHHHHHhCCCEEEecCCC-CHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCce
Confidence            3455555544  23344555566677788888888 788889999999999999866 7999999999999999888889


Q ss_pred             eEEEEeC
Q 040822          130 RFVIDIG  136 (158)
Q Consensus       130 k~vl~~~  136 (158)
                      |.++.+.
T Consensus       408 Kvvv~~~  414 (447)
T 4a0s_A          408 KVAVLCM  414 (447)
T ss_dssp             EEEEESS
T ss_pred             EEEEEeC
Confidence            9987764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.64  E-value=5.9e-16  Score=113.08  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=61.8

Q ss_pred             ccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--cce-EEEecccHHHHHHHHHc
Q 040822           51 SIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--PEI-EIIPIQYVNGALERLEN  124 (158)
Q Consensus        51 ~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~~i-~v~~~~~~~~a~~~~~~  124 (158)
                      +++|+++.++.+ .  ..+++...++.+++++.++..+ . .++++++++++++.++  +.+ +++++++++++++.+.+
T Consensus       275 ~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~-~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~  352 (370)
T 4ej6_A          275 KAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFIN-P-FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAA  352 (370)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSC-T-TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCC
T ss_pred             ccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccC-h-HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHc
Confidence            346677777755 2  4566777788889999998876 4 4578999999999985  344 79999999999998877


Q ss_pred             CC-cceeEEEEe
Q 040822          125 RD-VKYRFVIDI  135 (158)
Q Consensus       125 ~~-~~~k~vl~~  135 (158)
                      +. ..+|+++++
T Consensus       353 ~~~~~~kvv~~~  364 (370)
T 4ej6_A          353 AGEVKVLVIPSA  364 (370)
T ss_dssp             TTCSEEEECCC-
T ss_pred             CCCCeEEEEEcc
Confidence            65 345665544

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.64  E-value=4.9e-15  Score=107.55  Aligned_cols=86  Identities=10%  Similarity=0.187  Sum_probs=61.5

Q ss_pred             cccCCEEEEEcCC-Cc--eeeeehh--hhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEe-cccHHHHHH
Q 040822           50 ASIAGVYVIVEVP-KE--VKFKTVN--LIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIP-IQYVNGALE  120 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~--~~~~~~~--~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~-~~~~~~a~~  120 (158)
                      ++++|+++.++.+ ..  +.++...  ...++.++.++........+++++++++++.+++   +.++++ +++++++|+
T Consensus       256 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~  335 (352)
T 3fpc_A          256 IKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFM  335 (352)
T ss_dssp             EEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHH
T ss_pred             HhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccCchhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHH
Confidence            4457788888765 22  3333322  2346778888776413567899999999999986   347899 999999999


Q ss_pred             HHHcCCcc-eeEEEEe
Q 040822          121 RLENRDVK-YRFVIDI  135 (158)
Q Consensus       121 ~~~~~~~~-~k~vl~~  135 (158)
                      .++++... +|.++++
T Consensus       336 ~~~~~~~~~~Kvvi~~  351 (352)
T 3fpc_A          336 LMKDKPKDLIKPVVIL  351 (352)
T ss_dssp             HHHSCCTTCSEEEEEC
T ss_pred             HHHhCCCCcEEEEEEe
Confidence            99886544 7888765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.63  E-value=5e-15  Score=107.29  Aligned_cols=81  Identities=21%  Similarity=0.355  Sum_probs=61.9

Q ss_pred             CCEEEEEcCCC-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCccee
Q 040822           53 AGVYVIVEVPK-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYR  130 (158)
Q Consensus        53 ~g~~v~~g~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k  130 (158)
                      +|+++.++.+. ...++...++.+++++.++..+ +...+++++++++++.+++.+ +++++++++++++.++++...+|
T Consensus       264 ~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gK  342 (347)
T 1jvb_A          264 QGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVG-NQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGR  342 (347)
T ss_dssp             EEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSC-CHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCSE
T ss_pred             CCEEEEECCCCCCCCCCHHHHHhCceEEEEEecc-CHHHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcce
Confidence            45555555431 1134444556677888888777 778889999999999998766 89999999999999998887789


Q ss_pred             EEEE
Q 040822          131 FVID  134 (158)
Q Consensus       131 ~vl~  134 (158)
                      .++.
T Consensus       343 vvl~  346 (347)
T 1jvb_A          343 QVLI  346 (347)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8875

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.63  E-value=3.7e-15  Score=107.10  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=57.2

Q ss_pred             cccCCEEEEEcCC-Cce-eeeehhhhhc-cceeEEee----ecCCHHH----HHHHHHHHHhCCcccce-EEEecccHHH
Q 040822           50 ASIAGVYVIVEVP-KEV-KFKTVNLIME-MRTIAGSI----VGGGTQE----TKEMVEFCAENGIYPEI-EIIPIQYVNG  117 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~~~-~~~~~~~~~~-~~~i~g~~----~~~~~~~----~~~~~~l~~~~~i~~~i-~v~~~~~~~~  117 (158)
                      ++++|+++.++.+ .+. .++...+..+ ...+.+..    .. +..+    +++++++++++.+++.+ ++++++++++
T Consensus       229 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~  307 (325)
T 3jyn_A          229 VAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYAN-NAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAK  307 (325)
T ss_dssp             EEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSC-STTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHH
T ss_pred             hcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecC-CHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHH
Confidence            3456777777765 322 3455555444 34443322    12 2222    34789999999998754 8999999999


Q ss_pred             HHHHHHcCCcceeEEEE
Q 040822          118 ALERLENRDVKYRFVID  134 (158)
Q Consensus       118 a~~~~~~~~~~~k~vl~  134 (158)
                      +|+.++++...+|.++.
T Consensus       308 A~~~~~~~~~~Gkvvl~  324 (325)
T 3jyn_A          308 AQIELSARRTTGSTILI  324 (325)
T ss_dssp             HHHHHHTTCCCSCEEEE
T ss_pred             HHHHHHcCCCCceEEEe
Confidence            99999999888999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.63  E-value=4.5e-15  Score=107.89  Aligned_cols=81  Identities=12%  Similarity=0.217  Sum_probs=55.6

Q ss_pred             CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--cce-EEEecccHHHHHHHHHcCCcc
Q 040822           53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--PEI-EIIPIQYVNGALERLENRDVK  128 (158)
Q Consensus        53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~~i-~v~~~~~~~~a~~~~~~~~~~  128 (158)
                      +|+++.++.+ ....++...++.+++++.++...  ...+++++++++++.++  +.+ ++|++++++++|+.++++ ..
T Consensus       266 ~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~  342 (356)
T 1pl8_A          266 GGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRY--CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG-LG  342 (356)
T ss_dssp             TCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSC--SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CC
T ss_pred             CCEEEEEecCCCCCccCHHHHHhcceEEEEeccc--HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC-Cc
Confidence            4444444443 22333444455566667666543  34568899999999874  444 789999999999999887 67


Q ss_pred             eeEEEEeC
Q 040822          129 YRFVIDIG  136 (158)
Q Consensus       129 ~k~vl~~~  136 (158)
                      +|.++.+.
T Consensus       343 gKvvi~~~  350 (356)
T 1pl8_A          343 LKIMLKCD  350 (356)
T ss_dssp             SEEEEECC
T ss_pred             eEEEEeCC
Confidence            89988764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.63  E-value=4.7e-15  Score=107.31  Aligned_cols=67  Identities=16%  Similarity=0.262  Sum_probs=48.7

Q ss_pred             hhhhccceeEEeeecCCH-----------HHHHHHHHHHHhCCcccceE--EEecccHHHHHHHHHcCCc----ceeEEE
Q 040822           71 NLIMEMRTIAGSIVGGGT-----------QETKEMVEFCAENGIYPEIE--IIPIQYVNGALERLENRDV----KYRFVI  133 (158)
Q Consensus        71 ~~~~~~~~i~g~~~~~~~-----------~~~~~~~~l~~~~~i~~~i~--v~~~~~~~~a~~~~~~~~~----~~k~vl  133 (158)
                      .+..++.++.++... ..           ..+++++++++++.+++.+.  ++++++++++|+.++++..    .||.++
T Consensus       255 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~  333 (343)
T 3gaz_A          255 PLSFKQATYSGVFTL-HTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAI  333 (343)
T ss_dssp             HHHHTTCEEEECCTT-HHHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEE
T ss_pred             hhhhcCcEEEEEEec-cchhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEE
Confidence            344456666665442 21           45678999999999997654  8999999999999988764    578888


Q ss_pred             EeCcc
Q 040822          134 DIGQH  138 (158)
Q Consensus       134 ~~~~~  138 (158)
                      ++..+
T Consensus       334 ~~~~~  338 (343)
T 3gaz_A          334 TVEGH  338 (343)
T ss_dssp             ECC--
T ss_pred             Eeccc
Confidence            77653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.62  E-value=1.3e-14  Score=108.73  Aligned_cols=82  Identities=15%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             CEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCccee
Q 040822           54 GVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYR  130 (158)
Q Consensus        54 g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k  130 (158)
                      |+++.++.+  ....++...+..+.+++.++..+ +..++.+++++++++.+++.+ +++++++++++++.+.++...+|
T Consensus       338 G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~GK  416 (456)
T 3krt_A          338 GTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFA-NYREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGK  416 (456)
T ss_dssp             EEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSC-CHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSE
T ss_pred             cEEEEEecCCCcccccCHHHHHhcCeEEEEeccC-CHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCCc
Confidence            344444444  23344555566677788888888 888888999999999999766 79999999999999999988899


Q ss_pred             EEEEeC
Q 040822          131 FVIDIG  136 (158)
Q Consensus       131 ~vl~~~  136 (158)
                      .++.+.
T Consensus       417 vvv~~~  422 (456)
T 3krt_A          417 VGVLCL  422 (456)
T ss_dssp             EEEESS
T ss_pred             EEEEeC
Confidence            987654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.62  E-value=1.9e-14  Score=105.33  Aligned_cols=85  Identities=24%  Similarity=0.315  Sum_probs=62.3

Q ss_pred             cccC-CEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHH
Q 040822           50 ASIA-GVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALE  120 (158)
Q Consensus        50 ~~~~-g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~  120 (158)
                      ++++ |+++.++.+   ..+.++...++. +.++.++..+.  ...++++++++++++.+++   +.+++++++++++|+
T Consensus       284 l~~g~G~iv~~G~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~  362 (378)
T 3uko_A          284 CHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFD  362 (378)
T ss_dssp             BCTTTCEEEECSCCCTTCCEEECTHHHHT-TCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHH
T ss_pred             hhccCCEEEEEcccCCCCccccCHHHHhc-CcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHH
Confidence            3454 899988875   234455555554 78888876541  2466889999999999873   347999999999999


Q ss_pred             HHHcCCcceeEEEEeC
Q 040822          121 RLENRDVKYRFVIDIG  136 (158)
Q Consensus       121 ~~~~~~~~~k~vl~~~  136 (158)
                      .++++... |.++++.
T Consensus       363 ~~~~g~~~-Kvvi~~~  377 (378)
T 3uko_A          363 LLHEGTCL-RCVLDTS  377 (378)
T ss_dssp             HTTCTTCS-EEEEETT
T ss_pred             HHHCCCce-EEEEecC
Confidence            99877754 8887764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.62  E-value=2.5e-15  Score=109.16  Aligned_cols=86  Identities=13%  Similarity=0.303  Sum_probs=60.7

Q ss_pred             cccCCEEEEEcCC-C-ceeeee-hhhhhccceeEEeeecCCHH-H---------HHHHHHHHHhC---Ccccce-EEEec
Q 040822           50 ASIAGVYVIVEVP-K-EVKFKT-VNLIMEMRTIAGSIVGGGTQ-E---------TKEMVEFCAEN---GIYPEI-EIIPI  112 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~-~~~~~~-~~~~~~~~~i~g~~~~~~~~-~---------~~~~~~l~~~~---~i~~~i-~v~~~  112 (158)
                      ++++|+++.++.+ . ...++. ..++.++.++.++..+ ... .         .++++++++++   .+++.+ ++|++
T Consensus       251 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l  329 (354)
T 2j8z_A          251 LALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLR-SRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPV  329 (354)
T ss_dssp             EEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCST-TCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEG
T ss_pred             ccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEcc-cccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcH
Confidence            3456778877765 2 344555 5667788889888665 321 1         13467788888   787755 78999


Q ss_pred             ccHHHHHHHHHcCCcceeEEEEeC
Q 040822          113 QYVNGALERLENRDVKYRFVIDIG  136 (158)
Q Consensus       113 ~~~~~a~~~~~~~~~~~k~vl~~~  136 (158)
                      ++++++|+.++++...+|.++.+.
T Consensus       330 ~~~~~A~~~~~~~~~~gKvvv~~~  353 (354)
T 2j8z_A          330 TEIQEAHKYMEANKNIGKIVLELP  353 (354)
T ss_dssp             GGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             HHHHHHHHHHHhCCCCceEEEecC
Confidence            999999999988777789987653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.61  E-value=1.8e-15  Score=109.28  Aligned_cols=49  Identities=6%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhCCccc--ceEEEecccHHHHHHHHHcCC-cceeEEEEeCc
Q 040822           89 QETKEMVEFCAENGIYP--EIEIIPIQYVNGALERLENRD-VKYRFVIDIGQ  137 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~--~i~v~~~~~~~~a~~~~~~~~-~~~k~vl~~~~  137 (158)
                      ..+++++++++++.+++  +.++|++++++++|+.++++. ..+|+++.+.+
T Consensus       282 ~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          282 ETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             HHHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred             HHHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            45678999999999986  458999999999999999887 45999988764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.61  E-value=1.2e-14  Score=105.23  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=59.0

Q ss_pred             CCEEEEEcCC-Cceeeee-hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCc--ccce-EEEecccHHHHHHHHHcCCc
Q 040822           53 AGVYVIVEVP-KEVKFKT-VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGI--YPEI-EIIPIQYVNGALERLENRDV  127 (158)
Q Consensus        53 ~g~~v~~g~~-~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i--~~~i-~v~~~~~~~~a~~~~~~~~~  127 (158)
                      +|+++.++.+ ....++. ..++.+++++.++........+++++++++++.+  ++.+ +++++++++++++.++++..
T Consensus       255 ~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~  334 (343)
T 2dq4_A          255 GGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQA  334 (343)
T ss_dssp             EEEEEECCCCSSCEEECHHHHTGGGTCEEEECCSCCTTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSC
T ss_pred             CCEEEEEecCCCCceeCcHHHHHhCceEEEEeecCCCHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCc
Confidence            4555555544 3344444 5566677778777543134668899999999995  4554 78999999999999988776


Q ss_pred             ceeEEEEeC
Q 040822          128 KYRFVIDIG  136 (158)
Q Consensus       128 ~~k~vl~~~  136 (158)
                       +|.++.+.
T Consensus       335 -gKvv~~~~  342 (343)
T 2dq4_A          335 -VKVILDPK  342 (343)
T ss_dssp             -SEEEEETT
T ss_pred             -eEEEEeeC
Confidence             89987653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.61  E-value=9e-15  Score=106.13  Aligned_cols=65  Identities=12%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--cce-EEEecccHHHHHHHHHcCC-cceeEEEEeC
Q 040822           70 VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--PEI-EIIPIQYVNGALERLENRD-VKYRFVIDIG  136 (158)
Q Consensus        70 ~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~~i-~v~~~~~~~~a~~~~~~~~-~~~k~vl~~~  136 (158)
                      ..+..+++++.++...  ..++++++++++++.++  +.+ ++|++++++++|+.++++. ..+|.++.+.
T Consensus       282 ~~~~~~~~~i~g~~~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~  350 (352)
T 1e3j_A          282 VNACAREIDIKSVFRY--CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCR  350 (352)
T ss_dssp             HHHHTTTCEEEECCSC--SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECC
T ss_pred             HHHHhcCcEEEEeccc--hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecC
Confidence            3444555666665543  34568899999999864  444 7899999999999998887 5789988764

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.60  E-value=1.1e-14  Score=104.91  Aligned_cols=86  Identities=9%  Similarity=0.064  Sum_probs=61.5

Q ss_pred             ccCCEEEEEcCC-C-ceeeeeh-hhhhcc--ceeEEeeec--CCH----HHHHHHHHHHHhCCcccce-EEEecccHHHH
Q 040822           51 SIAGVYVIVEVP-K-EVKFKTV-NLIMEM--RTIAGSIVG--GGT----QETKEMVEFCAENGIYPEI-EIIPIQYVNGA  118 (158)
Q Consensus        51 ~~~g~~v~~g~~-~-~~~~~~~-~~~~~~--~~i~g~~~~--~~~----~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a  118 (158)
                      +++|+++.++.+ . ...++.. .++.++  .++.++...  ...    ..+++++++++++.+++.+ ++|++++++++
T Consensus       235 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A  314 (333)
T 1wly_A          235 RPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAA  314 (333)
T ss_dssp             EEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHH
T ss_pred             ccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHHHH
Confidence            446777777755 2 2344555 566667  777776431  022    2467899999999998755 78999999999


Q ss_pred             HHHHHcCCcceeEEEEeC
Q 040822          119 LERLENRDVKYRFVIDIG  136 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl~~~  136 (158)
                      ++.++++...+|.++.+.
T Consensus       315 ~~~~~~~~~~gKvvi~~~  332 (333)
T 1wly_A          315 HKYMGGRQTIGSIVLLPQ  332 (333)
T ss_dssp             HHHHHHCSCCSEEEEETT
T ss_pred             HHHHHcCCCceEEEEEeC
Confidence            999988877889987653

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.60  E-value=2e-14  Score=104.98  Aligned_cols=84  Identities=19%  Similarity=0.267  Sum_probs=62.5

Q ss_pred             cccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc--ceEEEecccHHHHHHH
Q 040822           50 ASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP--EIEIIPIQYVNGALER  121 (158)
Q Consensus        50 ~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~--~i~v~~~~~~~~a~~~  121 (158)
                      ++++|+++.++.+ .  ...++...++.+++++.++..+ .   ...+++++++++++.+++  .++.+++++++++|+.
T Consensus       279 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~l~~~~~A~~~  357 (371)
T 1f8f_A          279 LGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG-SGSPKKFIPELVRLYQQGKFPFDQLVKFYAFDEINQAAID  357 (371)
T ss_dssp             EEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG-GSCHHHHHHHHHHHHHTTSCCGGGGEEEEEGGGHHHHHHH
T ss_pred             HhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCC-CCchHHHHHHHHHHHHcCCCCcccceeEecHHHHHHHHHH
Confidence            3456778777765 2  3455666677788899888654 3   356789999999999874  4534999999999999


Q ss_pred             HHcCCcceeEEEEe
Q 040822          122 LENRDVKYRFVIDI  135 (158)
Q Consensus       122 ~~~~~~~~k~vl~~  135 (158)
                      ++++.. +|.++.+
T Consensus       358 ~~~~~~-~Kvvv~~  370 (371)
T 1f8f_A          358 SRKGIT-LKPIIKI  370 (371)
T ss_dssp             HHHTSC-SEEEEEC
T ss_pred             HHCCCc-eEEEEee
Confidence            987764 6887764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.60  E-value=1.1e-15  Score=110.83  Aligned_cols=83  Identities=10%  Similarity=0.102  Sum_probs=61.6

Q ss_pred             cccCCEEEEEcCC--Cceeeee-hhhhhccceeEEeeecCC---------HHHHHHHHHHHHhCCcccce-EEEecccHH
Q 040822           50 ASIAGVYVIVEVP--KEVKFKT-VNLIMEMRTIAGSIVGGG---------TQETKEMVEFCAENGIYPEI-EIIPIQYVN  116 (158)
Q Consensus        50 ~~~~g~~v~~g~~--~~~~~~~-~~~~~~~~~i~g~~~~~~---------~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~  116 (158)
                      ++++|+++.++..  ....++. ..++.+++++.++..+ .         ...+++++++++++.+++.+ +++++++++
T Consensus       253 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~  331 (349)
T 3pi7_A          253 MPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLS-EWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAI  331 (349)
T ss_dssp             SCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHH-HHHHHTHHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHH
T ss_pred             hcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEeh-hhhhhCcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHH
Confidence            4568899998865  4455666 7778889999998765 3         23456778888899998755 899999999


Q ss_pred             HHHHHHHcCCcceeEEEE
Q 040822          117 GALERLENRDVKYRFVID  134 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~vl~  134 (158)
                      ++++.+ .+...+|.+++
T Consensus       332 ~A~~~~-~~~~~gKvvl~  348 (349)
T 3pi7_A          332 AWVPAE-LTKPNGKVFIR  348 (349)
T ss_dssp             HHHHHH-HTSSSSCEEEE
T ss_pred             HHHHHH-hCCCCceEEEe
Confidence            999955 44566888875

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.60  E-value=3.3e-14  Score=103.47  Aligned_cols=62  Identities=31%  Similarity=0.428  Sum_probs=51.3

Q ss_pred             hhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           72 LIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        72 ~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ++.++.++.++..+ +..++++++++++++.+++.++++++++++++++.++++...+|.++.
T Consensus       297 ~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gKvvv~  358 (359)
T 1h2b_A          297 VISSEVSFEGSLVG-NYVELHELVTLALQGKVRVEVDIHKLDEINDVLERLEKGEVLGRAVLI  358 (359)
T ss_dssp             HHHTTCEEEECCSC-CHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEE
T ss_pred             HHhCCcEEEEecCC-CHHHHHHHHHHHHcCCCcceEEEEeHHHHHHHHHHHHcCCCceEEEee
Confidence            34456667776666 677789999999999998766999999999999999888777898875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.59  E-value=8.4e-14  Score=101.86  Aligned_cols=83  Identities=18%  Similarity=0.376  Sum_probs=62.1

Q ss_pred             cccC-CEEEEEcCC-CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCcc--cc-eEEEecccHHHHHHH
Q 040822           50 ASIA-GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIY--PE-IEIIPIQYVNGALER  121 (158)
Q Consensus        50 ~~~~-g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~--~~-i~v~~~~~~~~a~~~  121 (158)
                      ++++ |+++.++.+ ....++...++.++ ++.++..+ .   ...+++++++++++.++  +. .+++++++++++|+.
T Consensus       286 l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~g~~~~-~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~  363 (376)
T 1e3i_A          286 TVLGWGSCTVVGAKVDEMTIPTVDVILGR-SINGTFFG-GWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDL  363 (376)
T ss_dssp             BCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEEECSGG-GCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCccccCHHHhhccC-eEEEEecC-CCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHH
Confidence            3457 888888876 55566666666677 88887643 2   45688999999999987  34 478999999999999


Q ss_pred             HHcCCcceeEEEEe
Q 040822          122 LENRDVKYRFVIDI  135 (158)
Q Consensus       122 ~~~~~~~~k~vl~~  135 (158)
                      ++++. ..|.++.+
T Consensus       364 ~~~~~-~~Kvvi~~  376 (376)
T 1e3i_A          364 MKEGK-SIRTILTF  376 (376)
T ss_dssp             HHTTC-CSEEEEEC
T ss_pred             HhcCC-cceEEEeC
Confidence            98766 46887653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.58  E-value=4.7e-15  Score=109.50  Aligned_cols=81  Identities=12%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             ccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc--c-eEEEecccHHHHHHHHHcCC
Q 040822           51 SIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP--E-IEIIPIQYVNGALERLENRD  126 (158)
Q Consensus        51 ~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~--~-i~v~~~~~~~~a~~~~~~~~  126 (158)
                      +++|+++.+|.+ ....++...++.++.++.++........+++++++++++ +++  . .++|++++++++++.+.   
T Consensus       309 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~---  384 (404)
T 3ip1_A          309 GINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ---  384 (404)
T ss_dssp             CCCCEEEECSCCCSCEEECHHHHHHTTCEEEECCCCCSTTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT---
T ss_pred             CCCcEEEEeCCCCCCCcccHHHHhccceEEEEecCCCchHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh---
Confidence            778999999877 666778888888999999988651256789999999999 753  3 48999999999999887   


Q ss_pred             cceeEEEEeC
Q 040822          127 VKYRFVIDIG  136 (158)
Q Consensus       127 ~~~k~vl~~~  136 (158)
                       .+|.++++.
T Consensus       385 -~GKvvl~~~  393 (404)
T 3ip1_A          385 -TDKSLVKVT  393 (404)
T ss_dssp             -TCTTCSCEE
T ss_pred             -CCcEEEecC
Confidence             345555543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.58  E-value=1e-13  Score=101.31  Aligned_cols=83  Identities=24%  Similarity=0.374  Sum_probs=61.3

Q ss_pred             cccC-CEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCcc--cc-eEEEecccHHHHHH
Q 040822           50 ASIA-GVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIY--PE-IEIIPIQYVNGALE  120 (158)
Q Consensus        50 ~~~~-g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~--~~-i~v~~~~~~~~a~~  120 (158)
                      ++++ |+++.++.+ . ...++...++.++ ++.++..+ .   ...+++++++++++.++  +. .+++++++++++|+
T Consensus       283 l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~-~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~  360 (374)
T 1cdo_A          283 CLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFG-GFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAID  360 (374)
T ss_dssp             BCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGG-GCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHH
T ss_pred             hhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecC-CCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHH
Confidence            3457 888888876 2 4555656666666 88887543 2   35688999999999987  34 47999999999999


Q ss_pred             HHHcCCcceeEEEEe
Q 040822          121 RLENRDVKYRFVIDI  135 (158)
Q Consensus       121 ~~~~~~~~~k~vl~~  135 (158)
                      .++++.. .|.++++
T Consensus       361 ~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          361 LMKHGKC-IRTVLSL  374 (374)
T ss_dssp             HHHTTCC-SEEEEEC
T ss_pred             HHHCCCe-eEEEEeC
Confidence            9987764 5877653

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.57  E-value=1.8e-14  Score=103.37  Aligned_cols=85  Identities=12%  Similarity=0.058  Sum_probs=64.2

Q ss_pred             ccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecC-CH----HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHH
Q 040822           51 SIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGG-GT----QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLE  123 (158)
Q Consensus        51 ~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~-~~----~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~  123 (158)
                      +++|+++.++.+  ...+++...++.++.++.++.... ..    ..+++++++++++.+++..+++++++++++++.++
T Consensus       232 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~  311 (324)
T 3nx4_A          232 NYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQAATEITLADAPKFADAII  311 (324)
T ss_dssp             EEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHHHEEEEEGGGHHHHHHHHH
T ss_pred             hcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCCCCceeEeHHHHHHHHHHHH
Confidence            446677777765  235566667777888998876531 21    34567788888888887678999999999999999


Q ss_pred             cCCcceeEEEEe
Q 040822          124 NRDVKYRFVIDI  135 (158)
Q Consensus       124 ~~~~~~k~vl~~  135 (158)
                      ++...+|.++++
T Consensus       312 ~~~~~gkvvv~~  323 (324)
T 3nx4_A          312 NNQVQGRTLVKI  323 (324)
T ss_dssp             TTCCCSEEEEEC
T ss_pred             hCCCCceEEEec
Confidence            998889998765

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.57  E-value=1.8e-13  Score=100.10  Aligned_cols=83  Identities=24%  Similarity=0.423  Sum_probs=61.2

Q ss_pred             cccC-CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCcc--cc-eEEEecccHHHHH
Q 040822           50 ASIA-GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIY--PE-IEIIPIQYVNGAL  119 (158)
Q Consensus        50 ~~~~-g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~--~~-i~v~~~~~~~~a~  119 (158)
                      ++++ |+++.++.+ .  ...++...++.++ ++.++..+ .   ..++++++++++++.++  +. .++|+++++++++
T Consensus       282 l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~-~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~  359 (374)
T 2jhf_A          282 CQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFG-GFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGF  359 (374)
T ss_dssp             BCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGG-GCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHH
T ss_pred             hhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccC-CCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHH
Confidence            3457 888888866 2  3456666666667 88887644 2   45688999999999987  34 4799999999999


Q ss_pred             HHHHcCCcceeEEEEe
Q 040822          120 ERLENRDVKYRFVIDI  135 (158)
Q Consensus       120 ~~~~~~~~~~k~vl~~  135 (158)
                      +.++++.. .|.++++
T Consensus       360 ~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          360 DLLRSGES-IRTILTF  374 (374)
T ss_dssp             HHHHTTCC-SEEEEEC
T ss_pred             HHHHCCCc-ceEEEeC
Confidence            99987664 5877653

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.57  E-value=1.5e-13  Score=100.40  Aligned_cols=82  Identities=22%  Similarity=0.310  Sum_probs=60.7

Q ss_pred             cccC-CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCcc--cc-eEEEecccHHHHH
Q 040822           50 ASIA-GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIY--PE-IEIIPIQYVNGAL  119 (158)
Q Consensus        50 ~~~~-g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~--~~-i~v~~~~~~~~a~  119 (158)
                      ++++ |+++.++.+ .  ...++...++.++ ++.++..+ .   ..++++++++++++.++  +. .++|++++++++|
T Consensus       281 l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~-~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~  358 (373)
T 2fzw_A          281 CHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFG-GWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAF  358 (373)
T ss_dssp             BCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGG-GCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHH
T ss_pred             hccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccC-CCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHH
Confidence            3457 888888866 2  3455656666666 88887543 2   45688999999999987  34 4789999999999


Q ss_pred             HHHHcCCcceeEEEE
Q 040822          120 ERLENRDVKYRFVID  134 (158)
Q Consensus       120 ~~~~~~~~~~k~vl~  134 (158)
                      +.++++.. .|.+++
T Consensus       359 ~~~~~~~~-~kvvi~  372 (373)
T 2fzw_A          359 ELMHSGKS-IRTVVK  372 (373)
T ss_dssp             HHHHHTCC-SEEEEE
T ss_pred             HHHhCCCc-ceEEEe
Confidence            99987764 577765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.56  E-value=4.8e-14  Score=102.13  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhCCcccce-EEE---ecccHHHHHHHHHcCCcceeEEEEeCc
Q 040822           91 TKEMVEFCAENGIYPEI-EII---PIQYVNGALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i-~v~---~~~~~~~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      +++++++++++.+++.+ +++   ++++++++++.++++...||+++.+.+
T Consensus       289 ~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          289 LEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             HHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             HHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence            56789999999999865 566   899999999999999999999988765

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.56  E-value=8.9e-14  Score=101.34  Aligned_cols=81  Identities=11%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             CCEEEEEcCCCceeeeehhhhhccceeEEeeecCC------------HHHHHHHHHHHHhCCcccce-EEE---ecccHH
Q 040822           53 AGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGG------------TQETKEMVEFCAENGIYPEI-EII---PIQYVN  116 (158)
Q Consensus        53 ~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~------------~~~~~~~~~l~~~~~i~~~i-~v~---~~~~~~  116 (158)
                      +|+++.++.+.  .++...+..+++++.++... +            ...+++++++++++.+++.+ .++   ++++++
T Consensus       263 ~G~iv~~g~~~--~~~~~~~~~k~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~  339 (363)
T 4dvj_A          263 QGRFCLIDDPS--AFDIMLFKRKAVSIHHELMF-TRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLK  339 (363)
T ss_dssp             TCEEEECSCCS--SCCGGGGTTTTCEEEECCTT-HHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHH
T ss_pred             CCEEEEECCCC--ccchHHHhhccceEEEEEee-ccccccCcchhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHH
Confidence            44554443321  12233444556666665443 2            13467889999999999755 445   999999


Q ss_pred             HHHHHHHcCCcceeEEEEeC
Q 040822          117 GALERLENRDVKYRFVIDIG  136 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~vl~~~  136 (158)
                      +|++.++++...+|.++++.
T Consensus       340 ~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          340 QAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             HHHHHHHHTCCCSEEEEECS
T ss_pred             HHHHHHHhCCCceEEEEeCc
Confidence            99999999988899998764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.56  E-value=5.5e-14  Score=101.02  Aligned_cols=83  Identities=16%  Similarity=0.115  Sum_probs=56.8

Q ss_pred             ccCCEEEEEcCC-C-ceeeeehhhhhc-cceeEEeee----cCC----HHHHHHHHHHHHhCCcccce---EEEecccHH
Q 040822           51 SIAGVYVIVEVP-K-EVKFKTVNLIME-MRTIAGSIV----GGG----TQETKEMVEFCAENGIYPEI---EIIPIQYVN  116 (158)
Q Consensus        51 ~~~g~~v~~g~~-~-~~~~~~~~~~~~-~~~i~g~~~----~~~----~~~~~~~~~l~~~~~i~~~i---~v~~~~~~~  116 (158)
                      +++|+++.++.+ . ...++...++.+ ...+.+...    . +    ...+++++++++++.+++.+   +++++++++
T Consensus       230 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~  308 (327)
T 1qor_A          230 QRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYIT-TREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQ  308 (327)
T ss_dssp             EEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCC-SHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHH
T ss_pred             cCCCEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcC-CHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHH
Confidence            446677777655 2 233455555555 555554322    1 1    22367889999999998754   599999999


Q ss_pred             HHHHHHHcCCcceeEEEE
Q 040822          117 GALERLENRDVKYRFVID  134 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~vl~  134 (158)
                      ++++.++++...+|.++.
T Consensus       309 ~A~~~~~~~~~~gKvvl~  326 (327)
T 1qor_A          309 RAHEILESRATQGSSLLI  326 (327)
T ss_dssp             HHHHHHHTTCCCBCCEEE
T ss_pred             HHHHHHHhCCCCceEEEe
Confidence            999999888777888764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.52  E-value=8.3e-14  Score=101.46  Aligned_cols=66  Identities=11%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             hhhhhccceeEEeeecCC-----HHHHHHHHHHHHhCCcccce---------EEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822           70 VNLIMEMRTIAGSIVGGG-----TQETKEMVEFCAENGIYPEI---------EIIPIQYVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus        70 ~~~~~~~~~i~g~~~~~~-----~~~~~~~~~l~~~~~i~~~i---------~v~~~~~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                      ..++.++.++.++..+ .     ...+++++++++++.+++.+         ..++++++++|++.++++...+|.++.+
T Consensus       282 ~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  360 (362)
T 2c0c_A          282 AKLLKKSASVQGFFLN-HYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL  360 (362)
T ss_dssp             HHHHHHTCEEEECCGG-GCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEEC
T ss_pred             HHHHhhcceEEEEEhh-hhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEc
Confidence            3455677788887643 2     24578899999999998643         3579999999999998887788998865


Q ss_pred             C
Q 040822          136 G  136 (158)
Q Consensus       136 ~  136 (158)
                      .
T Consensus       361 ~  361 (362)
T 2c0c_A          361 P  361 (362)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.52  E-value=4.1e-14  Score=101.22  Aligned_cols=44  Identities=16%  Similarity=0.277  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEEeC
Q 040822           91 TKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVIDIG  136 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~~~  136 (158)
                      +++++++++++.+++.+ +++++++++++++.++  ...+|.++++.
T Consensus       270 ~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~~  314 (315)
T 3goh_A          270 GEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTLN  314 (315)
T ss_dssp             HHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEESC
T ss_pred             HHHHHHHHHCCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEec
Confidence            46789999999998755 8999999999999987  56689988764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.51  E-value=5.4e-13  Score=97.46  Aligned_cols=83  Identities=19%  Similarity=0.289  Sum_probs=59.9

Q ss_pred             cccC-CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecC-CHHHHHHHHHHHHhCCcc--cc-eEEEecccHHHHHHH
Q 040822           50 ASIA-GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGG-GTQETKEMVEFCAENGIY--PE-IEIIPIQYVNGALER  121 (158)
Q Consensus        50 ~~~~-g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~-~~~~~~~~~~l~~~~~i~--~~-i~v~~~~~~~~a~~~  121 (158)
                      ++++ |+++.++.+ .  ...++...++.++ ++.++..+. ...++++++++++++.++  +. .+++++++++++|+.
T Consensus       282 l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~  360 (373)
T 1p0f_A          282 TYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFEL  360 (373)
T ss_dssp             BCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCCGGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHH
T ss_pred             HhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcCHHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHH
Confidence            3456 888888765 2  3455555566666 788776430 235688999999999987  34 479999999999999


Q ss_pred             HHcCCcceeEEEE
Q 040822          122 LENRDVKYRFVID  134 (158)
Q Consensus       122 ~~~~~~~~k~vl~  134 (158)
                      ++++.. .|.+++
T Consensus       361 ~~~~~~-~kvvi~  372 (373)
T 1p0f_A          361 LSSGQG-VRSIMI  372 (373)
T ss_dssp             TTTSSC-SEEEEE
T ss_pred             HHCCCc-ceEEEe
Confidence            877654 577765

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.49  E-value=2.9e-13  Score=97.95  Aligned_cols=62  Identities=24%  Similarity=0.349  Sum_probs=36.1

Q ss_pred             hhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822           72 LIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID  134 (158)
Q Consensus        72 ~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~  134 (158)
                      ++.+++++.++..+ ...++++++++++++.+++.++++++++++++|+.++++...+|.++.
T Consensus       282 ~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gKvvl~  343 (344)
T 2h6e_A          282 TAVWNKKLLGSNYG-SLNDLEDVVRLSESGKIKPYIIKVPLDDINKAFTNLDEGRVDGRQVIT  343 (344)
T ss_dssp             HHHTTCEEEECCSC-CHHHHHHHHHHHHTTSSCCCEEEECC----------------CEEEEC
T ss_pred             HhhCCcEEEEEecC-CHHHHHHHHHHHHcCCCCcceEEEeHHHHHHHHHHHHcCCCceEEEEe
Confidence            34456677777666 677789999999999998756999999999999999887777888764

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.46  E-value=1.2e-12  Score=103.86  Aligned_cols=48  Identities=17%  Similarity=0.221  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCccc-ceEEEecccHHHHHHHHHcCCcceeEEEEeCc
Q 040822           90 ETKEMVEFCAENGIYP-EIEIIPIQYVNGALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      .+++++++++++.+++ +.++|++++++++|+.++++...+|.++.+.+
T Consensus       477 ~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~~  525 (795)
T 3slk_A          477 MLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTMPP  525 (795)
T ss_dssp             HHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHHTCCCBEEEEECCC
T ss_pred             HHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhcCCccceEEEecCc
Confidence            3578889999999987 45899999999999999999999999998754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.46  E-value=1e-12  Score=96.25  Aligned_cols=81  Identities=25%  Similarity=0.367  Sum_probs=61.7

Q ss_pred             CCEEEEEcCCC---ceeeeehh-hhhccceeEEeeecCCHHHHHHHHHHHHh--CCcccce-EEEecccHHHHHHHHHcC
Q 040822           53 AGVYVIVEVPK---EVKFKTVN-LIMEMRTIAGSIVGGGTQETKEMVEFCAE--NGIYPEI-EIIPIQYVNGALERLENR  125 (158)
Q Consensus        53 ~g~~v~~g~~~---~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~l~~~--~~i~~~i-~v~~~~~~~~a~~~~~~~  125 (158)
                      +|+++.++.+.   ...++... ++.+++++.++..+ ....++++++++++  +.+++.+ ++|++++++++|+.++++
T Consensus       291 ~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~  369 (380)
T 1vj0_A          291 GGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVS-DTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESR  369 (380)
T ss_dssp             EEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCC-CHHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHT
T ss_pred             CCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecC-CHHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcC
Confidence            45555555442   33444455 66778888888877 77888999999999  8887655 799999999999999887


Q ss_pred             CcceeEEEEe
Q 040822          126 DVKYRFVIDI  135 (158)
Q Consensus       126 ~~~~k~vl~~  135 (158)
                      ... |.++.+
T Consensus       370 ~~~-Kvvl~~  378 (380)
T 1vj0_A          370 EAL-KVILYP  378 (380)
T ss_dssp             SCS-CEEEEC
T ss_pred             CCc-eEEEEe
Confidence            766 888765

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.44  E-value=5.1e-14  Score=102.57  Aligned_cols=141  Identities=15%  Similarity=0.009  Sum_probs=81.8

Q ss_pred             ccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCC-----------ceeeeeh-------
Q 040822            9 NCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPK-----------EVKFKTV-------   70 (158)
Q Consensus         9 ~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~-----------~~~~~~~-------   70 (158)
                      .++|||++|+|+++|++|++|++||||++.... .+++++|+......+ +.+|+           .+++..+       
T Consensus        74 ~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~G~~aey~~v~~~~~-~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~  151 (364)
T 1gu7_A           74 APCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVN-FGTWRTHALGNDDDF-IKLPNPAQSKANGKPNGLTINQGATISVNP  151 (364)
T ss_dssp             EECCSCCEEEEEEECTTCCSCCTTCEEEESSSC-CCCSBSEEEEEGGGE-EEECCHHHHHHTTCSCCCCHHHHHTCTTHH
T ss_pred             cccCceeEEEEEEeCCCCCcCCCCCEEEecCCC-CCcchheEecCHHHe-EEcCCccccccccccCCCCHHHHhhccccH
Confidence            899999999999999999999999999876432 245666655443222 22332           2322111       


Q ss_pred             -----hhhh------c-cceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC--
Q 040822           71 -----NLIM------E-MRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG--  136 (158)
Q Consensus        71 -----~~~~------~-~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~--  136 (158)
                           .+..      + +..++...   +-.....++|+++..++++++...+.++..+..+.+++....  .+++..  
T Consensus       152 ~ta~~~l~~~~~~~~g~~~VlV~Ga---~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~--~vi~~~~~  226 (364)
T 1gu7_A          152 LTAYLMLTHYVKLTPGKDWFIQNGG---TSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT--QVITEDQN  226 (364)
T ss_dssp             HHHHHHHHSSSCCCTTTCEEEESCT---TSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS--EEEEHHHH
T ss_pred             HHHHHHHHHhhccCCCCcEEEECCC---CcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe--EEEecCcc
Confidence                 1110      1 11221111   234457889999988887655544555433323333322322  233433  


Q ss_pred             ------cccc-cC--CccCcCccccCCCC
Q 040822          137 ------QHLE-LK--PRVGPWSCMDKIPS  156 (158)
Q Consensus       137 ------~~~~-~t--~g~g~d~v~d~~~~  156 (158)
                            +.++ .|  +++|+|+|||++|+
T Consensus       227 ~~~~~~~~i~~~t~~~~~g~Dvvid~~G~  255 (364)
T 1gu7_A          227 NSREFGPTIKEWIKQSGGEAKLALNCVGG  255 (364)
T ss_dssp             HCGGGHHHHHHHHHHHTCCEEEEEESSCH
T ss_pred             chHHHHHHHHHHhhccCCCceEEEECCCc
Confidence                  2344 56  67899999999985

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.44  E-value=1.3e-15  Score=111.67  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=84.2

Q ss_pred             CCCCccccccccEEEEEeCCCC-CCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeehh-----------h
Q 040822            5 SLIENCMGHEIVGAVKEVGSNV-KCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVN-----------L   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v-~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~-----------~   72 (158)
                      .++|.++|||++|+|+++|++| ++|++||||++...   +++++|+...... ++.+|+.+++..+.           .
T Consensus        88 ~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~~---G~~aey~~v~~~~-~~~iP~~~~~~~aa~l~~~~~ta~~~  163 (379)
T 3iup_A           88 LDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGG---AMYSQYRCIPADQ-CLVLPEGATPADGASSFVNPLTALGM  163 (379)
T ss_dssp             TTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECCS---CCSBSEEEEEGGG-EEECCTTCCHHHHTTSSHHHHHHHHH
T ss_pred             cCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecCC---CcceeEEEeCHHH-eEECCCCCCHHHHHhhhhhHHHHHHH
Confidence            3578999999999999999999 89999999988653   3566666544332 22345322221111           0


Q ss_pred             -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-c
Q 040822           73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-L  141 (158)
Q Consensus        73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-~  141 (158)
                           ..++..++.. .+ .-.....++|+++..+++++....+    ++.++.+++-...  .+++.     .+.++ +
T Consensus       164 ~~~~~~~g~~vlV~g-ag-~G~vG~~a~q~a~~~Ga~Vi~~~~~----~~~~~~~~~lGa~--~~~~~~~~~~~~~v~~~  235 (379)
T 3iup_A          164 VETMRLEGHSALVHT-AA-ASNLGQMLNQICLKDGIKLVNIVRK----QEQADLLKAQGAV--HVCNAASPTFMQDLTEA  235 (379)
T ss_dssp             HHHHHHTTCSCEEES-ST-TSHHHHHHHHHHHHHTCCEEEEESS----HHHHHHHHHTTCS--CEEETTSTTHHHHHHHH
T ss_pred             HHHhccCCCEEEEEC-CC-CCHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHhCCCc--EEEeCCChHHHHHHHHH
Confidence                 1122223221 02 2234577889999888865433222    2334444443332  23343     33456 7


Q ss_pred             CCccCcCccccCCCC
Q 040822          142 KPRVGPWSCMDKIPS  156 (158)
Q Consensus       142 t~g~g~d~v~d~~~~  156 (158)
                      |+++|+|+|||++|+
T Consensus       236 t~~~g~d~v~d~~g~  250 (379)
T 3iup_A          236 LVSTGATIAFDATGG  250 (379)
T ss_dssp             HHHHCCCEEEESCEE
T ss_pred             hcCCCceEEEECCCc
Confidence            889999999999986

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.43  E-value=1.4e-13  Score=101.41  Aligned_cols=44  Identities=39%  Similarity=0.629  Sum_probs=36.2

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCN   48 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~   48 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.
T Consensus        57 ~~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~-~Cg~C~  100 (398)
T 2dph_A           57 IVPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNV-ACGRCR  100 (398)
T ss_dssp             CCCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSBC-CCSCSH
T ss_pred             CCCCCcccCCceEEEEEEECCCCCCCCCCCEEEEcCCC-CCCCCh
Confidence            34679999999999999999999999999999875433 455544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.42  E-value=7.2e-14  Score=102.94  Aligned_cols=43  Identities=37%  Similarity=0.665  Sum_probs=34.9

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCN   48 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~   48 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.
T Consensus        59 ~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~-~cg~C~  101 (398)
T 1kol_A           59 AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNV-ACGRCR  101 (398)
T ss_dssp             CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEE-CCSSSH
T ss_pred             CCCCcccCcccEEEEEEECCCCCcCCCCCEEEECCcC-CCCCCh
Confidence            4578999999999999999999999999999764322 444443

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.42  E-value=5e-12  Score=92.42  Aligned_cols=48  Identities=21%  Similarity=0.339  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822           88 TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus        88 ~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                      ...+++++++++++.+++.+ +++++++++++++.++++...+|.++.+
T Consensus       326 ~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          326 GPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             HHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            34568899999999998765 7899999999999999887778988765

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.41  E-value=2.1e-13  Score=99.62  Aligned_cols=141  Identities=18%  Similarity=0.209  Sum_probs=82.8

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc------cccccccccccCCEEEEEcCCCceeeeeh---------
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV------NSCQDCNFASIAGVYVIVEVPKEVKFKTV---------   70 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~------~~~~~~~~~~~~g~~v~~g~~~~~~~~~~---------   70 (158)
                      .+|.++|||++|+|+++|++|++|++||||++....      ..+++++|+......+ +.+|+.+++..+         
T Consensus        61 ~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~-~~~P~~~~~~~aa~~~~~~~t  139 (371)
T 3gqv_A           61 TPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVW-AKIPKGLSFEQAAALPAGIST  139 (371)
T ss_dssp             CTTSCCCSEEEEEEEEECTTCCSCCTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCE-EECCTTCCHHHHHTSHHHHHH
T ss_pred             CCCccCccccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCCCCCCcCcCeEEEchhhe-EECCCCCCHHHHhhhhhhHHH
Confidence            469999999999999999999999999999765321      1235666665554332 234533222111         


Q ss_pred             ---hhhhccce----------------eEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeE
Q 040822           71 ---NLIMEMRT----------------IAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF  131 (158)
Q Consensus        71 ---~~~~~~~~----------------i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~  131 (158)
                         .+......                -.....+ +-.....++|+++..+++++... +-++    ++.+++....  .
T Consensus       140 a~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-~G~vG~~a~qla~~~Ga~Vi~~~-~~~~----~~~~~~lGa~--~  211 (371)
T 3gqv_A          140 AGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGG-STATATVTMQMLRLSGYIPIATC-SPHN----FDLAKSRGAE--E  211 (371)
T ss_dssp             HHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEE-CGGG----HHHHHHTTCS--E
T ss_pred             HHHHHHhhccCCCCCccccccccCCCcEEEEECC-CcHHHHHHHHHHHHCCCEEEEEe-CHHH----HHHHHHcCCc--E
Confidence               01011000                0111111 23456788999999998765443 3333    3333333332  2


Q ss_pred             EEEeC-----cccc-cCCccCcCccccCCCC
Q 040822          132 VIDIG-----QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       132 vl~~~-----~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      +++..     +.++ +|+++ +|+|||++|+
T Consensus       212 vi~~~~~~~~~~v~~~t~g~-~d~v~d~~g~  241 (371)
T 3gqv_A          212 VFDYRAPNLAQTIRTYTKNN-LRYALDCITN  241 (371)
T ss_dssp             EEETTSTTHHHHHHHHTTTC-CCEEEESSCS
T ss_pred             EEECCCchHHHHHHHHccCC-ccEEEECCCc
Confidence            34432     3455 78875 9999999986

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.35  E-value=8.4e-12  Score=89.64  Aligned_cols=81  Identities=14%  Similarity=0.130  Sum_probs=52.4

Q ss_pred             CCEEEEEcCC-C-ceeeeehhhhhccceeEEeee--cCCHHH----HHHHHHHHHhCCcccceEEEecccHHHHHHHHHc
Q 040822           53 AGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIV--GGGTQE----TKEMVEFCAENGIYPEIEIIPIQYVNGALERLEN  124 (158)
Q Consensus        53 ~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~--~~~~~~----~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~  124 (158)
                      +|+++.+|.+ . ...++...++.+++++.++..  . ....    ++.+.++++.+ ++++++++++++++++|+.+++
T Consensus       239 ~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~~~~~~~~~~g-l~~~~~~~~l~~~~~A~~~~~~  316 (328)
T 1xa0_A          239 GGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYC-PMDLRLRIWERLAGDLKPD-LERIAQEISLAELPQALKRILR  316 (328)
T ss_dssp             EEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSC-CHHHHHHHHHHHHTTTCCC-HHHHEEEEEGGGHHHHHHHHHH
T ss_pred             CCEEEEEeecCCCCCCCchhhhhhcCceEEEEecccC-CHHHHHHHHHHHHHHHHcC-CceeeeEeCHHHHHHHHHHHHc
Confidence            4555555544 1 233444455667778877632  2 2222    34444444555 7776789999999999999988


Q ss_pred             CCcceeEEEEe
Q 040822          125 RDVKYRFVIDI  135 (158)
Q Consensus       125 ~~~~~k~vl~~  135 (158)
                      +...+|.++.+
T Consensus       317 ~~~~gKvvv~~  327 (328)
T 1xa0_A          317 GELRGRTVVRL  327 (328)
T ss_dssp             TCCCSEEEEEC
T ss_pred             CCCCCeEEEEe
Confidence            87788988764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.33  E-value=6.6e-12  Score=90.27  Aligned_cols=83  Identities=12%  Similarity=0.143  Sum_probs=54.5

Q ss_pred             cCCEEEEEcCC--CceeeeehhhhhccceeEEeeec-CCHHH----HHHHHHHHHhCCcccce-EEEecccHHHHHHHHH
Q 040822           52 IAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVG-GGTQE----TKEMVEFCAENGIYPEI-EIIPIQYVNGALERLE  123 (158)
Q Consensus        52 ~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~-~~~~~----~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~  123 (158)
                      ++|+++.+|.+  ....++...++.+++++.++... .....    ++.++++++++.+++.+ ++|++++++++|+.++
T Consensus       239 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~  318 (330)
T 1tt7_A          239 YGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDIL  318 (330)
T ss_dssp             EEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCSTTSEEEEECSTTHHHHHHHTT
T ss_pred             CCCEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCcccccceEEcHHHHHHHHHHHH
Confidence            35566666654  23445555566677888876421 02222    33445555567777765 8999999999999998


Q ss_pred             cCCcceeEEEE
Q 040822          124 NRDVKYRFVID  134 (158)
Q Consensus       124 ~~~~~~k~vl~  134 (158)
                      ++...+|.++.
T Consensus       319 ~~~~~gKvvi~  329 (330)
T 1tt7_A          319 QNRIQGRVIVK  329 (330)
T ss_dssp             TTCCSSEEEEC
T ss_pred             cCCCCCeEEEe
Confidence            88777888764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.33  E-value=8.1e-12  Score=90.29  Aligned_cols=85  Identities=15%  Similarity=0.090  Sum_probs=61.0

Q ss_pred             cCCEEEEEcCC-C------ceeeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccceE-EEecccHHHH
Q 040822           52 IAGVYVIVEVP-K------EVKFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEIE-IIPIQYVNGA  118 (158)
Q Consensus        52 ~~g~~v~~g~~-~------~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i~-v~~~~~~~~a  118 (158)
                      ++|+++.+|.+ .      ...++...++.+++++.++..+ ..     ..+++++++++++.++++++ ++++++++++
T Consensus       247 ~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A  325 (345)
T 2j3h_A          247 MHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVS-DFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEA  325 (345)
T ss_dssp             EEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGG-GGGGGHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHH
T ss_pred             cCCEEEEEccccccccCCccccccHHHHhhhceeeceeeeh-hhhhhHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHH
Confidence            35566666544 1      1233444566677788776654 32     22678999999999998764 7999999999


Q ss_pred             HHHHHcCCcceeEEEEeCc
Q 040822          119 LERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl~~~~  137 (158)
                      |+.++++...+|.++.+.+
T Consensus       326 ~~~~~~~~~~gKvvv~~~~  344 (345)
T 2j3h_A          326 LVGLFHGKNVGKQVVVVAR  344 (345)
T ss_dssp             HHHHHTTCCSSEEEEESSC
T ss_pred             HHHHHcCCCceEEEEEeCC
Confidence            9999988888899987643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.31  E-value=2.6e-11  Score=87.37  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             cccCCEEEEEcCCC-----c---eeeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccH
Q 040822           50 ASIAGVYVIVEVPK-----E---VKFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYV  115 (158)
Q Consensus        50 ~~~~g~~v~~g~~~-----~---~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~  115 (158)
                      ++++|+++.++...     .   ..++...++.+++++.++..+ ..     ..+++++++++++.+++.+ .+++++++
T Consensus       238 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~  316 (336)
T 4b7c_A          238 IAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVM-DYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETF  316 (336)
T ss_dssp             EEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGG-GGGGGHHHHHHHHHHHHHTTSSCCCEEEEECGGGH
T ss_pred             HhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhh-hhhhhhHHHHHHHHHHHHCCCcccceeeecCHHHH
Confidence            34467777776542     1   233445567788899998776 43     5678899999999998754 56899999


Q ss_pred             HHHHHHHHcCCcceeEEEEe
Q 040822          116 NGALERLENRDVKYRFVIDI  135 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl~~  135 (158)
                      +++|+.++++...+|.++++
T Consensus       317 ~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          317 PETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             HHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHcCCCCceEEEeC
Confidence            99999999988888998753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.28  E-value=4.7e-11  Score=86.71  Aligned_cols=66  Identities=9%  Similarity=0.001  Sum_probs=50.8

Q ss_pred             hhhhccceeEEeeecCC-----HHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEEeCc
Q 040822           71 NLIMEMRTIAGSIVGGG-----TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus        71 ~~~~~~~~i~g~~~~~~-----~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      .++.+++++.++..+ .     ...+++++++++++.+++.. .++++++++++++.++++...+|.++.+.+
T Consensus       282 ~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  353 (357)
T 2zb4_A          282 IQKERNITRERFLVL-NYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISE  353 (357)
T ss_dssp             HHHHHTCEEEECCGG-GGGGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             hhhcceeEEEEeehh-hhhHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHHcCCCCceEEEEEec
Confidence            344556667776544 3     34578899999999998643 569999999999999888778899988754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.19  E-value=5.1e-12  Score=91.82  Aligned_cols=30  Identities=33%  Similarity=0.325  Sum_probs=28.1

Q ss_pred             CccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822            8 ENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP   39 (158)
Q Consensus         8 p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   39 (158)
                      |.++|||++| |+++|++ ++|++||||++.+
T Consensus        58 p~v~G~E~~G-V~~vG~~-~~~~vGdrV~~~~   87 (357)
T 2b5w_A           58 HLVLGHEAVG-VVVDPND-TELEEGDIVVPTV   87 (357)
T ss_dssp             EEECCSEEEE-EEEECTT-SSCCTTCEEEECS
T ss_pred             CcccCceeEE-EEEECCC-CCCCCCCEEEECC
Confidence            8999999999 9999999 9999999998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.10  E-value=1.9e-09  Score=77.53  Aligned_cols=83  Identities=14%  Similarity=0.062  Sum_probs=59.0

Q ss_pred             ccCCEEEEEcCC-C------cee-eeehhhhhccceeEEeeecCC------HHHHHHHHHHHHhCCcccce-EEEecccH
Q 040822           51 SIAGVYVIVEVP-K------EVK-FKTVNLIMEMRTIAGSIVGGG------TQETKEMVEFCAENGIYPEI-EIIPIQYV  115 (158)
Q Consensus        51 ~~~g~~v~~g~~-~------~~~-~~~~~~~~~~~~i~g~~~~~~------~~~~~~~~~l~~~~~i~~~i-~v~~~~~~  115 (158)
                      +++|+++.++.. .      ... .+...++.+++++.++..+ .      ...+++++++++++.+++.. ..++++++
T Consensus       235 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~  313 (333)
T 1v3u_A          235 KDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY-RWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENM  313 (333)
T ss_dssp             EEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGG-GCCTHHHHHHHHHHHHHHHTTSSCCCEEEEECGGGH
T ss_pred             hcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehh-hcchHHHHHHHHHHHHHHHCCCccCccccccCHHHH
Confidence            345677777654 2      111 2344566778888887654 3      23466789999999998743 56899999


Q ss_pred             HHHHHHHHcCCcceeEEEE
Q 040822          116 NGALERLENRDVKYRFVID  134 (158)
Q Consensus       116 ~~a~~~~~~~~~~~k~vl~  134 (158)
                      +++|+.++++...+|.++.
T Consensus       314 ~~A~~~~~~~~~~gKvvl~  332 (333)
T 1v3u_A          314 PAAFIEMLNGANLGKAVVT  332 (333)
T ss_dssp             HHHHHHHHTTCCSBEEEEE
T ss_pred             HHHHHHHHcCCCCceEEEe
Confidence            9999999888778888865

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.50  E-value=3.5e-08  Score=71.82  Aligned_cols=39  Identities=33%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             CccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            8 ENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         8 p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      |.++|||++|+|++  ++ ++|++||||++.+.. .|+.|.+|
T Consensus        61 p~v~G~E~~G~V~~--~~-~~~~~GDrV~~~~~~-~cg~C~~C   99 (366)
T 2cdc_A           61 FLVLGHEAIGVVEE--SY-HGFSQGDLVMPVNRR-GCGICRNC   99 (366)
T ss_dssp             CEECCSEEEEEECS--CC-SSCCTTCEEEECSEE-CCSSSHHH
T ss_pred             CCcCCcceEEEEEe--CC-CCCCCCCEEEEcCCC-CCCCChhh
Confidence            89999999999999  77 999999999876533 45555544

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.17  E-value=6.8e-06  Score=59.75  Aligned_cols=87  Identities=17%  Similarity=0.143  Sum_probs=69.6

Q ss_pred             cccccCCEEEEEcCC-Cc-eeeeehh---hhhccceeEEeeecCCHHHHHHHHHHHHhCC------cccce-EEEecccH
Q 040822           48 NFASIAGVYVIVEVP-KE-VKFKTVN---LIMEMRTIAGSIVGGGTQETKEMVEFCAENG------IYPEI-EIIPIQYV  115 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~~-~~~~~~~---~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~------i~~~i-~v~~~~~~  115 (158)
                      ..++++|+++.++.+ .. ..++...   ++.+++++.++..+ ....+++++++++++.      +++.+ ++++++++
T Consensus       266 ~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~  344 (366)
T 2cdc_A          266 PLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNG-QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDE  344 (366)
T ss_dssp             GGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCC-CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCH
T ss_pred             HHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCC-CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHH
Confidence            456788999999877 33 5666666   78889999998877 7888999999999998      55655 79999999


Q ss_pred             HHHHHHH-HcCCcceeEEEEe
Q 040822          116 NGALERL-ENRDVKYRFVIDI  135 (158)
Q Consensus       116 ~~a~~~~-~~~~~~~k~vl~~  135 (158)
                      +++|+.+ ..+...+|.++.+
T Consensus       345 ~~A~~~l~~~~~~~gKvvi~~  365 (366)
T 2cdc_A          345 KELLKVLREKEHGEIKIRILW  365 (366)
T ss_dssp             HHHHHHHHCCCTTCCEEEEEC
T ss_pred             HHHHHHHhhhcCCceEEEEec
Confidence            9999984 3355578888764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=98.15  E-value=4.4e-06  Score=61.44  Aligned_cols=88  Identities=14%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             cccccCCEEEEEcCC--------------CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c---ceE
Q 040822           48 NFASIAGVYVIVEVP--------------KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P---EIE  108 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~--------------~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~---~i~  108 (158)
                      ..++++|+++++|.+              ....++...++.+++++.++... ....+++++++++++.++  +   +.+
T Consensus       287 ~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~~i~~  365 (398)
T 2dph_A          287 DVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP-VTNYNRHLTEAILWDQMPYLSKVMNIE  365 (398)
T ss_dssp             HHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC-GGGTHHHHHHHHHTTCCHHHHHHHCEE
T ss_pred             HHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEEeccC-cHHHHHHHHHHHHcCCCCccchhhEEE
Confidence            356788999998865              12355666777888999887666 566688999999999998  5   348


Q ss_pred             EEecccHHHHHHHHHcCCcceeEEEEeCc
Q 040822          109 IIPIQYVNGALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus       109 v~~~~~~~~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      +|++++++++|+.++++.. +|.++.+..
T Consensus       366 ~~~l~~~~~A~~~~~~~~~-gKvvv~~~~  393 (398)
T 2dph_A          366 VITLDQAPDGYAKFDKGSP-AKFVIDPHG  393 (398)
T ss_dssp             EECSTTHHHHHHHHHTTCS-CEEEECTTS
T ss_pred             EEcHHHHHHHHHHHhcCCc-eEEEEecCc
Confidence            9999999999999988777 899887644

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=98.00  E-value=1.6e-05  Score=58.38  Aligned_cols=89  Identities=10%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             cccccCCEEEEEcCC-C-------------ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc---c-ceEE
Q 040822           48 NFASIAGVYVIVEVP-K-------------EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY---P-EIEI  109 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~-------------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~---~-~i~v  109 (158)
                      ..++++|+++++|.+ .             .+.++...++.++.++.++... ....++++++++.++.++   + +.++
T Consensus       288 ~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~g~l~~~~~~i~~~  366 (398)
T 1kol_A          288 QVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTP-VMKYNRALMQAIMWDRINIAEVVGVQV  366 (398)
T ss_dssp             HHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCC-HHHHHHHHHHHHHTTSCCHHHHHTEEE
T ss_pred             HHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhcccEEEecccC-hHHHHHHHHHHHHcCCCCCccceeEEE
Confidence            356788999998864 1             1344555566778888876544 455678899999999998   3 3589


Q ss_pred             EecccHHHHHHHHHcCCcceeEEEEeCcc
Q 040822          110 IPIQYVNGALERLENRDVKYRFVIDIGQH  138 (158)
Q Consensus       110 ~~~~~~~~a~~~~~~~~~~~k~vl~~~~~  138 (158)
                      |++++++++|+.++++.. +|.++.+..+
T Consensus       367 ~~l~~~~~A~~~~~~~~~-gKvvi~~~~~  394 (398)
T 1kol_A          367 ISLDDAPRGYGEFDAGVP-KKFVIDPHKT  394 (398)
T ss_dssp             ECGGGHHHHHHHHHHTCS-CEEEECTTCS
T ss_pred             EcHHHHHHHHHHHhCCCc-eEEEEEeCCc
Confidence            999999999999988876 8999876543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.99  E-value=4.9e-07  Score=79.31  Aligned_cols=132  Identities=13%  Similarity=0.033  Sum_probs=72.1

Q ss_pred             CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------hhh-
Q 040822            7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------NLI-   73 (158)
Q Consensus         7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~~~-   73 (158)
                      .|.++|+|++|+|.          +||||+++...  +++++|+......+ ..+|+.+++..+            .+. 
T Consensus      1595 ~~~~lG~E~aG~V~----------vGdrV~g~~~~--G~~Aeyv~vp~~~v-~~iPd~ls~~eAA~lp~~~~TA~~al~~ 1661 (2512)
T 2vz8_A         1595 RDCMLGMEFSGRDA----------SGRRVMGMVPA--EGLATSVLLLQHAT-WEVPSTWTLEEAASVPIVYTTAYYSLVV 1661 (2512)
T ss_dssp             SSSCCCCEEEEEET----------TSCCEEEECSS--CCSBSEEECCGGGE-EECCTTSCHHHHTTSHHHHHHHHHHHTT
T ss_pred             cCCceEEEEEEEEc----------cCCEEEEeecC--CceeeEEEcccceE-EEeCCCCCHHHHHHhHHHHHHHHHHHHH
Confidence            46789999999883          79999876532  35667766553332 345533332111            111 


Q ss_pred             -----hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cC
Q 040822           74 -----MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LK  142 (158)
Q Consensus        74 -----~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t  142 (158)
                           .++..++...   +-.....++|+++..++++++++.+-++.+.+.+....-..  ..+++     +.+.++ .|
T Consensus      1662 ~a~l~~Ge~VLI~ga---aGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga--~~v~~~~~~~~~~~i~~~t 1736 (2512)
T 2vz8_A         1662 RGRMQPGESVLIHSG---SGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDE--TCFANSRDTSFEQHVLRHT 1736 (2512)
T ss_dssp             TTCCCTTCEEEETTT---TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCS--TTEEESSSSHHHHHHHHTT
T ss_pred             HhcCCCCCEEEEEeC---ChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCc--eEEecCCCHHHHHHHHHhc
Confidence                 1222233222   22445788999999988765443332222222111100111  11222     334566 89


Q ss_pred             CccCcCccccCCCC
Q 040822          143 PRVGPWSCMDKIPS  156 (158)
Q Consensus       143 ~g~g~d~v~d~~~~  156 (158)
                      +|+|+|+|+|++++
T Consensus      1737 ~g~GvDvVld~~g~ 1750 (2512)
T 2vz8_A         1737 AGKGVDLVLNSLAE 1750 (2512)
T ss_dssp             TSCCEEEEEECCCH
T ss_pred             CCCCceEEEECCCc
Confidence            99999999999874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.99  E-value=4.3e-07  Score=64.36  Aligned_cols=127  Identities=9%  Similarity=-0.003  Sum_probs=67.2

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------hh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------NL   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~~   72 (158)
                      +++|.++|||++|+|+           ||||++...  .+++++|+...... +..+|+.+++..+            .+
T Consensus        53 ~~~p~i~G~e~~G~V~-----------GdrV~~~~~--~G~~aey~~v~~~~-~~~iP~~~~~~~aa~l~~~~~ta~~~l  118 (302)
T 1iz0_A           53 LHPPFIPGMEVVGVVE-----------GRRYAALVP--QGGLAERVAVPKGA-LLPLPEGLSPEEAAAFPVSFLTAYLAL  118 (302)
T ss_dssp             CCSSBCCCCEEEEEET-----------TEEEEEECS--SCCSBSEEEEEGGG-CEECCTTCCHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCCcccceEEEEEE-----------CcEEEEecC--CcceeeEEEEcHHH-cEeCCCCCCHHHHHHhhhHHHHHHHHH
Confidence            3679999999999998           999987653  23566665544322 2234533332211            11


Q ss_pred             h-----hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc--ccc-cCCc
Q 040822           73 I-----MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ--HLE-LKPR  144 (158)
Q Consensus        73 ~-----~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~--~~~-~t~g  144 (158)
                      .     .+...++..  + +-.....++++++..+.+++.....-++.+.    +++...  ..+++..+  ++. ..  
T Consensus       119 ~~~~~~~g~~vlV~G--a-~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~~~~ga--~~~~~~~~~~~~~~~~--  187 (302)
T 1iz0_A          119 KRAQARPGEKVLVQA--A-AGALGTAAVQVARAMGLRVLAAASRPEKLAL----PLALGA--EEAATYAEVPERAKAW--  187 (302)
T ss_dssp             HHTTCCTTCEEEESS--T-TBHHHHHHHHHHHHTTCEEEEEESSGGGSHH----HHHTTC--SEEEEGGGHHHHHHHT--
T ss_pred             HHhcCCCCCEEEEEC--C-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHhcCC--CEEEECCcchhHHHHh--
Confidence            1     011111111  1 2344578889999888865443332333332    222222  23345432  222 11  


Q ss_pred             cCcCccccCCCCC
Q 040822          145 VGPWSCMDKIPSR  157 (158)
Q Consensus       145 ~g~d~v~d~~~~~  157 (158)
                      +|+|+||| +|++
T Consensus       188 ~~~d~vid-~g~~  199 (302)
T 1iz0_A          188 GGLDLVLE-VRGK  199 (302)
T ss_dssp             TSEEEEEE-CSCT
T ss_pred             cCceEEEE-CCHH
Confidence            68999999 8763

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.94  E-value=1.6e-05  Score=56.29  Aligned_cols=87  Identities=13%  Similarity=0.165  Sum_probs=63.8

Q ss_pred             cccccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeec---CCHHHHHHHHH---HHHhCCcccce-EEEecccHHHH
Q 040822           48 NFASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVG---GGTQETKEMVE---FCAENGIYPEI-EIIPIQYVNGA  118 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~---l~~~~~i~~~i-~v~~~~~~~~a  118 (158)
                      ..++++|+++.++.+ . ...++...++.++.++.++..+   .....++++++   +++++.+++.+ ++|++++++++
T Consensus       206 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A  285 (302)
T 1iz0_A          206 GLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAA  285 (302)
T ss_dssp             TTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHH
T ss_pred             HhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHH
Confidence            356778999998876 3 2245566677788999888642   03456788888   99899998765 79999999999


Q ss_pred             HHHHHcCCcceeEEEE
Q 040822          119 LERLENRDVKYRFVID  134 (158)
Q Consensus       119 ~~~~~~~~~~~k~vl~  134 (158)
                      ++.++++...+|.++.
T Consensus       286 ~~~~~~~~~~gKvvv~  301 (302)
T 1iz0_A          286 FRALLDRGHTGKVVVR  301 (302)
T ss_dssp             HHHTTCTTCCBEEEEE
T ss_pred             HHHHHcCCCCceEEEe
Confidence            9999887777888764

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.94  E-value=4.5e-05  Score=55.30  Aligned_cols=87  Identities=13%  Similarity=0.030  Sum_probs=67.5

Q ss_pred             cccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC---------HHHHHHHHHHHHhCCccc-ceEEEecc--
Q 040822           48 NFASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG---------TQETKEMVEFCAENGIYP-EIEIIPIQ--  113 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~---------~~~~~~~~~l~~~~~i~~-~i~v~~~~--  113 (158)
                      ..++++|+++.++.+  ....++...++.++.++.++..+ .         ...+++++++++++.+++ ...+++++  
T Consensus       263 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l  341 (364)
T 1gu7_A          263 RKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVT-ELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGT  341 (364)
T ss_dssp             HTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHH-HHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSS
T ss_pred             HHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchh-HhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCch
Confidence            457889999999876  35566666777788999987654 3         245788999999999986 34677775  


Q ss_pred             -cHHHHHHHHHcCCcceeEEEEe
Q 040822          114 -YVNGALERLENRDVKYRFVIDI  135 (158)
Q Consensus       114 -~~~~a~~~~~~~~~~~k~vl~~  135 (158)
                       +++++|+.+.++...+|.++.+
T Consensus       342 ~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          342 KPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             SCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             hhHHHHHHHHHhCCCCceEEEeC
Confidence             9999999998887778988753

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.83  E-value=7.9e-06  Score=59.20  Aligned_cols=85  Identities=12%  Similarity=0.189  Sum_probs=68.1

Q ss_pred             cccccCCEEEEEcCC--Cceeeeehhh----hhccceeEEeeecCCHHHHHHHHHHHHhC--C-cccce-EEEecccHHH
Q 040822           48 NFASIAGVYVIVEVP--KEVKFKTVNL----IMEMRTIAGSIVGGGTQETKEMVEFCAEN--G-IYPEI-EIIPIQYVNG  117 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~--~~~~~~~~~~----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~--~-i~~~i-~v~~~~~~~~  117 (158)
                      ..++++|+++.++.+  ....++...+    +.+++++.++..+ +...+++++++++++  . +++.+ ++++++++++
T Consensus       261 ~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~  339 (357)
T 2b5w_A          261 QALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNS-HVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEA  339 (357)
T ss_dssp             HHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCC-CHHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGG
T ss_pred             HHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccC-CHHHHHHHHHHHHhCchhhhhhhcceeecHHHHHH
Confidence            456888999999876  3445666666    7889999999888 788899999999999  8 57655 7999999999


Q ss_pred             HHHHHHcCCcceeEEEEeC
Q 040822          118 ALERLENRDVKYRFVIDIG  136 (158)
Q Consensus       118 a~~~~~~~~~~~k~vl~~~  136 (158)
                      +++.+   ...+|.++.+.
T Consensus       340 A~~~~---~~~gKvvi~~~  355 (357)
T 2b5w_A          340 AFDDD---DTTIKTAIEFS  355 (357)
T ss_dssp             GGCCS---TTCCEEEEECC
T ss_pred             HHHHh---CCCceEEEEec
Confidence            99977   34578887764

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.03  E-value=0.00068  Score=49.47  Aligned_cols=82  Identities=7%  Similarity=-0.008  Sum_probs=55.7

Q ss_pred             CEEEEEcCCCceeeeehhhhhccceeEEeeecCCH------HHH----HHHHHHHHhCCcccce-EEEecccH--HHHHH
Q 040822           54 GVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGT------QET----KEMVEFCAENGIYPEI-EIIPIQYV--NGALE  120 (158)
Q Consensus        54 g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~----~~~~~l~~~~~i~~~i-~v~~~~~~--~~a~~  120 (158)
                      |+++.++.......+...++.++.++.+...+ ..      ...    +++++++.+ ++++.+ ++++++++  +++++
T Consensus       281 g~iv~~G~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~  358 (379)
T 3iup_A          281 KQVYLYGGLDTSPTEFNRNFGMAWGMGGWLLF-PFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIA  358 (379)
T ss_dssp             EEEEECCCSEEEEEEECCCSCSCEEEEECCHH-HHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHH
T ss_pred             ceEEEecCCCCCccccccccccceEEEEEEee-eecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHH
Confidence            66666665532333444556677888887654 32      122    444555555 576654 89999999  99999


Q ss_pred             HHHcCCcceeEEEEeCc
Q 040822          121 RLENRDVKYRFVIDIGQ  137 (158)
Q Consensus       121 ~~~~~~~~~k~vl~~~~  137 (158)
                      .+.++...+|.++++.+
T Consensus       359 ~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          359 VYNKRATGEKYLINPNK  375 (379)
T ss_dssp             HHTTCCTTCCEEEETTT
T ss_pred             HHhcCCCCceEEEeCCC
Confidence            99998888999987654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.46  E-value=0.0074  Score=43.83  Aligned_cols=88  Identities=9%  Similarity=0.038  Sum_probs=58.9

Q ss_pred             ccCCEEEEEcCC-C------ceeee---ehhhhhccceeEEeeecC-CHH-------HHHHHHHHHHhCCcccc---eEE
Q 040822           51 SIAGVYVIVEVP-K------EVKFK---TVNLIMEMRTIAGSIVGG-GTQ-------ETKEMVEFCAENGIYPE---IEI  109 (158)
Q Consensus        51 ~~~g~~v~~g~~-~------~~~~~---~~~~~~~~~~i~g~~~~~-~~~-------~~~~~~~l~~~~~i~~~---i~v  109 (158)
                      +.+|+++.++.. .      ....+   ...++.+++++.+++... ...       .+++++++++++.+++.   .+.
T Consensus       254 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~  333 (371)
T 3gqv_A          254 RAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQ  333 (371)
T ss_dssp             TTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEE
T ss_pred             cCCCEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecC
Confidence            578999998853 1      12222   234666788887765330 111       12477899999999863   245


Q ss_pred             EecccHHHHHHHHHcCCcceeE-EEEeCcc
Q 040822          110 IPIQYVNGALERLENRDVKYRF-VIDIGQH  138 (158)
Q Consensus       110 ~~~~~~~~a~~~~~~~~~~~k~-vl~~~~~  138 (158)
                      +++++++++|+.++++...+|. ++.+.++
T Consensus       334 ~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~~  363 (371)
T 3gqv_A          334 GGFDHIKQGMELVRKGELSGEKLVVRLEGP  363 (371)
T ss_dssp             ECHHHHHHHHHHHHTTCCSSCEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHcCCCceEEEEEEeCCc
Confidence            8999999999999998887754 4455543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.06  E-value=0.07  Score=47.91  Aligned_cols=88  Identities=14%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC-----HHHHHHHHHHH----HhCCcccc-eEEEecccHH
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG-----TQETKEMVEFC----AENGIYPE-IEIIPIQYVN  116 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~l~----~~~~i~~~-i~v~~~~~~~  116 (158)
                      .++++|+++.+|..  .........++.+++++.+.... .     ...++++++++    .++.+++. .++|++++++
T Consensus      1759 ~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~ 1837 (2512)
T 2vz8_A         1759 CLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLD-SLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVE 1837 (2512)
T ss_dssp             TEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGG-GTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHH
T ss_pred             hcCCCcEEEEeecccccccCcccccccccCCcEEEeeHH-HHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHH
Confidence            46778899888755  11122234455677888776543 2     23445555544    35667764 4899999999


Q ss_pred             HHHHHHHcCCcceeEEEEeCc
Q 040822          117 GALERLENRDVKYRFVIDIGQ  137 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~vl~~~~  137 (158)
                      ++++.+..+...+|.++.+..
T Consensus      1838 eA~~~l~~g~~~GKvVi~~~~ 1858 (2512)
T 2vz8_A         1838 AAFRYMAQGKHIGKVVIQVRE 1858 (2512)
T ss_dssp             HHHHHHHTTCCSSEEEEECSC
T ss_pred             HHHHhhhccCccceEEEECCC
Confidence            999999988888999988753

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=94.34  E-value=0.031  Score=32.42  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=19.1

Q ss_pred             ccEEEEEeCCCCC---------CCCCCCEEEec
Q 040822           15 IVGAVKEVGSNVK---------CFEVGDRVGVG   38 (158)
Q Consensus        15 ~~G~V~~vG~~v~---------~~~vGdrV~~~   38 (158)
                      ..|+|++||++..         .+++||+|+..
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~   68 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYG   68 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEEC
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEEC
Confidence            4699999999742         58999999643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.12  E-value=0.013  Score=42.27  Aligned_cols=148  Identities=17%  Similarity=0.206  Sum_probs=85.3

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC-----------------C---EEEEE----
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA-----------------G---VYVIV----   59 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~-----------------g---~~v~~----   59 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+.+                 |   .++.+    
T Consensus        69 ~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~  147 (363)
T 3m6i_A           69 IVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQV-ICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVW  147 (363)
T ss_dssp             BCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEE-CCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGG
T ss_pred             cCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEeccc-CCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhh
Confidence            34679999999999999999999999999999876543 56666554321                 1   11211    


Q ss_pred             --cCCCceeeeehhhh----------------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHH
Q 040822           60 --EVPKEVKFKTVNLI----------------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALER  121 (158)
Q Consensus        60 --g~~~~~~~~~~~~~----------------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~  121 (158)
                        .+|+ +++..+.++                .++..++... +   .....++|+++..+++.++.+..-++-.+..+.
T Consensus       148 ~~~iP~-~s~~~aa~~~~~~ta~~~l~~~~~~~g~~VlV~Ga-G---~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  222 (363)
T 3m6i_A          148 CHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGA-G---PIGLITMLCAKAAGACPLVITDIDEGRLKFAKE  222 (363)
T ss_dssp             EEECTT-CCHHHHHHHHHHHHHHHHHHHHTCCTTCCEEEECC-S---HHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH
T ss_pred             EEECCC-CCHHHHHhhhHHHHHHHHHHHcCCCCCCEEEEECC-C---HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence              2233 333221111                1222222211 3   335778999999998744333322322222233


Q ss_pred             HHcCCcceeEE----EEeCcccc-cCCccCcCccccCCCCC
Q 040822          122 LENRDVKYRFV----IDIGQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       122 ~~~~~~~~k~v----l~~~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      +.+...+++.-    -++.+.++ .|+++|+|+|||++|++
T Consensus       223 l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~  263 (363)
T 3m6i_A          223 ICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVE  263 (363)
T ss_dssp             HCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCH
T ss_pred             hchhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCCh
Confidence            32122222110    02334566 79999999999999863

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.87  E-value=0.009  Score=42.86  Aligned_cols=141  Identities=11%  Similarity=0.047  Sum_probs=85.1

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------h
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------N   71 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~   71 (158)
                      +.++|.++|||++|+|+++|++|+ |++||||++...  .+++++|+......+ +.+|+.+++..+            .
T Consensus        75 ~~~~p~v~G~E~~G~V~~vG~~v~-~~vGDrV~~~~~--~G~~aey~~v~~~~~-~~iP~~~~~~~aa~l~~~~~ta~~~  150 (342)
T 4eye_A           75 KMEPPFVPGIETAGVVRSAPEGSG-IKPGDRVMAFNF--IGGYAERVAVAPSNI-LPTPPQLDDAEAVALIANYHTMYFA  150 (342)
T ss_dssp             CCCSSBCCCSEEEEEEEECCTTSS-CCTTCEEEEECS--SCCSBSEEEECGGGE-EECCTTSCHHHHHHHTTHHHHHHHH
T ss_pred             CCCCCCccceeEEEEEEEECCCCC-CCCCCEEEEecC--CCcceEEEEEcHHHe-EECCCCCCHHHHHHhhhHHHHHHHH
Confidence            357899999999999999999999 999999987653  245677766554332 345533333211            1


Q ss_pred             hhh------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe----Ccccc-
Q 040822           72 LIM------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI----GQHLE-  140 (158)
Q Consensus        72 ~~~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~----~~~~~-  140 (158)
                      +..      +...++..  + +-.....++++++..+++++.....-++.+.+.+ +   ..  ..+++.    .+.+. 
T Consensus       151 l~~~~~~~~g~~VlV~G--a-sg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~---ga--~~v~~~~~~~~~~v~~  221 (342)
T 4eye_A          151 YARRGQLRAGETVLVLG--A-AGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-V---GA--DIVLPLEEGWAKAVRE  221 (342)
T ss_dssp             HHTTSCCCTTCEEEESS--T-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H---TC--SEEEESSTTHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEC--C-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---CC--cEEecCchhHHHHHHH
Confidence            100      11111111  1 2344578899999988876544443444433322 2   22  123333    33455 


Q ss_pred             cCCccCcCccccCCCCC
Q 040822          141 LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       141 ~t~g~g~d~v~d~~~~~  157 (158)
                      .++++|+|+|||++|++
T Consensus       222 ~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          222 ATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             HTTTSCEEEEEESCC--
T ss_pred             HhCCCCceEEEECCchh
Confidence            78899999999999864

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=93.83  E-value=0.065  Score=31.95  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCC--CCCCCCEEEe
Q 040822           16 VGAVKEVGSNVK--CFEVGDRVGV   37 (158)
Q Consensus        16 ~G~V~~vG~~v~--~~~vGdrV~~   37 (158)
                      -|+|++||+++.  .+++||+|+.
T Consensus        48 ~g~VvAVG~g~~~~~vKvGD~Vl~   71 (111)
T 1g31_A           48 LCVVHSVGPDVPEGFCEVGDLTSL   71 (111)
T ss_dssp             EEEEEEECTTSCTTSCCTTCEEEE
T ss_pred             eEEEEEECCCCccccccCCCEEEE
Confidence            499999999874  4899999954

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.82  E-value=0.0045  Score=45.48  Aligned_cols=45  Identities=31%  Similarity=0.556  Sum_probs=37.8

Q ss_pred             CCCCccccccccEEEEEeCCCC------CCCCCCCEEEecCCcccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNV------KCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v------~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      .++|.++|||++|+|+++|++|      ++|++||||++.+.. .|+.|.+|
T Consensus        89 ~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~-~Cg~C~~C  139 (404)
T 3ip1_A           89 TGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEML-WCGHCRPC  139 (404)
T ss_dssp             BCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECSEE-CCSCSHHH
T ss_pred             CCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEECCcc-CCCCCHHH
Confidence            4689999999999999999999      899999999886544 56666554

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.27  E-value=0.0079  Score=43.28  Aligned_cols=44  Identities=41%  Similarity=0.464  Sum_probs=35.8

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCN   48 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~   48 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.
T Consensus        50 ~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~c~~c~   93 (352)
T 3fpc_A           50 GERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT-PDWRTS   93 (352)
T ss_dssp             CCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSBC-CCSSSH
T ss_pred             CCCCCcccCCcceEEEEEECCCCCcCCCCCEEEEcccc-CCCCch
Confidence            45679999999999999999999999999999875433 344443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.69  E-value=0.0082  Score=42.99  Aligned_cols=140  Identities=18%  Similarity=0.125  Sum_probs=85.3

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeehh------------h
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVN------------L   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~------------~   72 (158)
                      .++|.++|||++|+|+++|++|++|++||||+....  .+++++|+...... ++.+|+.+++..+.            +
T Consensus        60 ~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--~G~~aey~~v~~~~-~~~vP~~l~~~~aa~l~~~~~ta~~~~  136 (340)
T 3gms_A           60 IPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRG--EGTWQEYVKTSADF-VVPIPDSIDDFTAAQMYINPLTAWVTC  136 (340)
T ss_dssp             SCSSBCCCSCCEEEEEEECTTSCGGGTTCEEEECSS--SCSSBSEEEEEGGG-EEECCTTSCHHHHTTSSHHHHHHHHHH
T ss_pred             CCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEecCC--CccceeEEEcCHHH-eEECCCCCCHHHHhhhcchHHHHHHHH
Confidence            578999999999999999999999999999986542  24566766544332 23455333322111            1


Q ss_pred             hh------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-
Q 040822           73 IM------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-  140 (158)
Q Consensus        73 ~~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-  140 (158)
                      ..      +...++  ..+ +-.....++++++..+++++....+-++.+.+.+ +   ..  ..+++.     .+.+. 
T Consensus       137 ~~~~~~~~g~~VlV--~Ga-~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---ga--~~~~~~~~~~~~~~~~~  207 (340)
T 3gms_A          137 TETLNLQRNDVLLV--NAC-GSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L---GA--AYVIDTSTAPLYETVME  207 (340)
T ss_dssp             HTTSCCCTTCEEEE--SST-TSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H---TC--SEEEETTTSCHHHHHHH
T ss_pred             HHhcccCCCCEEEE--eCC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C---CC--cEEEeCCcccHHHHHHH
Confidence            00      111111  111 2245578889998888876544444444444332 2   22  123343     23455 


Q ss_pred             cCCccCcCccccCCCC
Q 040822          141 LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       141 ~t~g~g~d~v~d~~~~  156 (158)
                      .|+++|+|+|||++|+
T Consensus       208 ~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          208 LTNGIGADAAIDSIGG  223 (340)
T ss_dssp             HTTTSCEEEEEESSCH
T ss_pred             HhCCCCCcEEEECCCC
Confidence            7899999999999885

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=92.55  E-value=0.0054  Score=49.08  Aligned_cols=142  Identities=16%  Similarity=0.068  Sum_probs=84.8

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeehhh-------------
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVNL-------------   72 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~-------------   72 (158)
                      +.|.++|||++|+|+++|++|++|++||||++...   +++++|+...... ++.+|+.+++..+..             
T Consensus       263 ~~~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~~~---G~~ae~~~v~~~~-~~~iP~~ls~~~AA~l~~~~~Ta~~al~  338 (795)
T 3slk_A          263 PGVASLGSEGAGVVVETGPGVTGLAPGDRVMGMIP---KAFGPLAVADHRM-VTRIPAGWSFARAASVPIVFLTAYYALV  338 (795)
T ss_dssp             SSCCCSCCCEEEEEEEECSSCCSSCTTCEEEECCS---SCSSSEEEEETTS-EEECCTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred             CCCccccceeEEEEEEeCCCCCcCCCCCEEEEEec---CCCcCEEEeehHH-EEECCCCCCHHHHHhhhHHHHHHHHHHH
Confidence            34678999999999999999999999999987653   3455665444332 234564444322111             


Q ss_pred             -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCccC
Q 040822           73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPRVG  146 (158)
Q Consensus        73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g~g  146 (158)
                           ..++..++....|   .....++|+++..+++++... +-++.+ .++...+...+++. .++.+.++ .|+|+|
T Consensus       339 ~~a~l~~G~~VLI~gaaG---gvG~~aiqlAk~~Ga~V~~t~-~~~k~~-~l~lga~~v~~~~~-~~~~~~i~~~t~g~G  412 (795)
T 3slk_A          339 DLAGLRPGESLLVHSAAG---GVGMAAIQLARHLGAEVYATA-SEDKWQ-AVELSREHLASSRT-CDFEQQFLGATGGRG  412 (795)
T ss_dssp             CCTCCCTTCCEEEESTTB---HHHHHHHHHHHHTTCCEEEEC-CGGGGG-GSCSCGGGEECSSS-STHHHHHHHHSCSSC
T ss_pred             HHhCCCCCCEEEEecCCC---HHHHHHHHHHHHcCCEEEEEe-ChHHhh-hhhcChhheeecCC-hhHHHHHHHHcCCCC
Confidence                 1123333333223   345789999999998765443 222211 11100011111111 13445566 899999


Q ss_pred             cCccccCCCCC
Q 040822          147 PWSCMDKIPSR  157 (158)
Q Consensus       147 ~d~v~d~~~~~  157 (158)
                      +|+|||+++++
T Consensus       413 vDvVld~~gg~  423 (795)
T 3slk_A          413 VDVVLNSLAGE  423 (795)
T ss_dssp             CSEEEECCCTT
T ss_pred             eEEEEECCCcH
Confidence            99999999875

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.10  E-value=0.0081  Score=43.41  Aligned_cols=142  Identities=20%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC----------------C---EEEE------E
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA----------------G---VYVI------V   59 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~----------------g---~~v~------~   59 (158)
                      .++|.++|||++|+|+++|++|++|++||||+..... .|+.|.+|+.+                |   .++.      +
T Consensus        71 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~  149 (359)
T 1h2b_A           71 PKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAV-TDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVI  149 (359)
T ss_dssp             CCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCB-CCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEE
T ss_pred             CCCCeecCcCceEEEEEECCCCCCCCCCCEEEeCCCC-CCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEE
Confidence            4679999999999999999999999999999766533 45555554321                1   1222      2


Q ss_pred             cCCCceeeeehh---------------hhh-------ccceeEEeeecCCHHHHHHHHHHHHhC-CcccceEEEecccHH
Q 040822           60 EVPKEVKFKTVN---------------LIM-------EMRTIAGSIVGGGTQETKEMVEFCAEN-GIYPEIEIIPIQYVN  116 (158)
Q Consensus        60 g~~~~~~~~~~~---------------~~~-------~~~~i~g~~~~~~~~~~~~~~~l~~~~-~i~~~i~v~~~~~~~  116 (158)
                      .+|+.+++..+.               +..       ++..++... +   .....++|+++.. +++++. +   +..+
T Consensus       150 ~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G---~vG~~avqlak~~~Ga~Vi~-~---~~~~  221 (359)
T 1h2b_A          150 KLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-G---GLGHIAVQLLKVMTPATVIA-L---DVKE  221 (359)
T ss_dssp             ECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-S---HHHHHHHHHHHHHCCCEEEE-E---ESSH
T ss_pred             ECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECC-C---HHHHHHHHHHHHcCCCeEEE-E---eCCH
Confidence            244322221111               000       111111111 2   3457788999887 775432 2   2222


Q ss_pred             HHHHHHHcCCcceeEEEEeC----cccc-cCCccCcCccccCCCCC
Q 040822          117 GALERLENRDVKYRFVIDIG----QHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       117 ~a~~~~~~~~~~~k~vl~~~----~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      +.++.+++....  .+++..    +.+. +|+++|+|+|||++|++
T Consensus       222 ~~~~~~~~lGa~--~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~  265 (359)
T 1h2b_A          222 EKLKLAERLGAD--HVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  265 (359)
T ss_dssp             HHHHHHHHTTCS--EEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             HHHHHHHHhCCC--EEEeccchHHHHHHHHhCCCCCcEEEECCCCc
Confidence            334444443432  234543    3455 78888999999999863

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=91.90  E-value=0.065  Score=31.36  Aligned_cols=24  Identities=29%  Similarity=0.253  Sum_probs=18.9

Q ss_pred             ccEEEEEeCCCCC---------CCCCCCEEEec
Q 040822           15 IVGAVKEVGSNVK---------CFEVGDRVGVG   38 (158)
Q Consensus        15 ~~G~V~~vG~~v~---------~~~vGdrV~~~   38 (158)
                      ..|+|++||++..         .+++||+|+..
T Consensus        41 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~   73 (100)
T 1we3_O           41 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFA   73 (100)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEEEC
T ss_pred             cCCEEEEECCCcCCCCCCEEeeecCCCCEEEEC
Confidence            4699999998742         48999999653

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=91.70  E-value=0.15  Score=29.77  Aligned_cols=24  Identities=29%  Similarity=0.206  Sum_probs=18.7

Q ss_pred             ccEEEEEeCCCCC----------CCCCCCEEEec
Q 040822           15 IVGAVKEVGSNVK----------CFEVGDRVGVG   38 (158)
Q Consensus        15 ~~G~V~~vG~~v~----------~~~vGdrV~~~   38 (158)
                      ..|+|++||++..          .+++||+|+..
T Consensus        38 ~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~   71 (99)
T 1p3h_A           38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS   71 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred             ceEEEEEECCCcCcCCCCEEEccccCCCCEEEEC
Confidence            4699999998641          38999999653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.64  E-value=0.01  Score=42.21  Aligned_cols=141  Identities=16%  Similarity=0.142  Sum_probs=84.2

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeehh------------h
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTVN------------L   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~------------~   72 (158)
                      +++|.++|||++|+|+++|++|++|++||||++.... .+++++|+...... ++.+|+.+++..+.            +
T Consensus        55 ~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~-~G~~aey~~v~~~~-~~~~P~~~~~~~aa~l~~~~~ta~~~l  132 (325)
T 3jyn_A           55 PFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGP-LGAYSEVHVLPEAN-LVKLADSVSFEQAAALMLKGLTVQYLL  132 (325)
T ss_dssp             SSSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESSSS-SCCSBSEEEEEGGG-EEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEecCC-CccccceEEecHHH-eEECCCCCCHHHHhhhhhhHHHHHHHH
Confidence            4689999999999999999999999999999876532 34567776554332 33456433332111            0


Q ss_pred             hh------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-
Q 040822           73 IM------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-  140 (158)
Q Consensus        73 ~~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-  140 (158)
                      ..      +...++  ..+ +-.....++++++..+++++.....-++    ++.+++...  ..+++.     .+.+. 
T Consensus       133 ~~~~~~~~g~~VlV--~Ga-~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~~Ga--~~~~~~~~~~~~~~~~~  203 (325)
T 3jyn_A          133 RQTYQVKPGEIILF--HAA-AGGVGSLACQWAKALGAKLIGTVSSPEK----AAHAKALGA--WETIDYSHEDVAKRVLE  203 (325)
T ss_dssp             HTTSCCCTTCEEEE--SST-TSHHHHHHHHHHHHHTCEEEEEESSHHH----HHHHHHHTC--SEEEETTTSCHHHHHHH
T ss_pred             HHhcCCCCCCEEEE--EcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHcCC--CEEEeCCCccHHHHHHH
Confidence            00      111111  111 2244577889998888765433222222    333332222  223343     23455 


Q ss_pred             cCCccCcCccccCCCC
Q 040822          141 LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       141 ~t~g~g~d~v~d~~~~  156 (158)
                      .|+++|+|+|||++|+
T Consensus       204 ~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          204 LTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             HTTTCCEEEEEESSCG
T ss_pred             HhCCCCceEEEECCCh
Confidence            7899999999999886

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=91.48  E-value=0.15  Score=29.66  Aligned_cols=23  Identities=35%  Similarity=0.319  Sum_probs=18.1

Q ss_pred             ccEEEEEeCCCC---------CCCCCCCEEEe
Q 040822           15 IVGAVKEVGSNV---------KCFEVGDRVGV   37 (158)
Q Consensus        15 ~~G~V~~vG~~v---------~~~~vGdrV~~   37 (158)
                      ..|+|++||++.         -.+++||+|+.
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf   67 (97)
T 1pcq_O           36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVIF   67 (97)
T ss_dssp             CEEEEEEECSEECTTSSSCEECSCCTTCEEEE
T ss_pred             cccEEEEEcCceecCCCCEEecccCCCCEEEE
Confidence            459999999863         23899999965

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=91.44  E-value=0.0065  Score=43.69  Aligned_cols=143  Identities=15%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             CCCCCccccccccEEEEEeCCCC-CCCCCCCEEEecCCc-cccccccccccCCEEEEEcCCCceeeeehh----------
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNV-KCFEVGDRVGVGPYV-NSCQDCNFASIAGVYVIVEVPKEVKFKTVN----------   71 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v-~~~~vGdrV~~~~~~-~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~----------   71 (158)
                      +.++|.++|||++|+|+++|++| ++|++||||++.... ..+++++|+...... +..+|+.+++..+.          
T Consensus        76 ~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~-~~~iP~~~~~~~aa~l~~~~~ta~  154 (349)
T 3pi7_A           76 PRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAA-CIPLLDTVRDEDGAAMIVNPLTAI  154 (349)
T ss_dssp             CBCTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGG-EEECCTTCCC--GGGSSHHHHHHH
T ss_pred             CCCCCCCccceEEEEEEEECCCccCCCCCCCEEEEeccCCCCccceeeEeechHH-eEECCCCCCHHHHhhccccHHHHH
Confidence            45689999999999999999999 999999999876411 134566666544332 22345333322111          


Q ss_pred             -hh-----hc-cceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC-----ccc
Q 040822           72 -LI-----ME-MRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG-----QHL  139 (158)
Q Consensus        72 -~~-----~~-~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~-----~~~  139 (158)
                       ++     .+ ...++  ..+ +-.....++++++..+++++....+-++.+.+.+ +   ..  ..+++..     +.+
T Consensus       155 ~~~~~~~~~g~~~vli--~gg-~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-~---Ga--~~~~~~~~~~~~~~v  225 (349)
T 3pi7_A          155 AMFDIVKQEGEKAFVM--TAG-ASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD-I---GA--AHVLNEKAPDFEATL  225 (349)
T ss_dssp             HHHHHHHHHCCSEEEE--SST-TSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH-H---TC--SEEEETTSTTHHHHH
T ss_pred             HHHHHHhhCCCCEEEE--eCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---CC--CEEEECCcHHHHHHH
Confidence             11     11 11222  113 3345578889999888876544334444443322 2   22  2233432     335


Q ss_pred             c-cCCccCcCccccCCCC
Q 040822          140 E-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       140 ~-~t~g~g~d~v~d~~~~  156 (158)
                      . .|+++|+|+|||++|+
T Consensus       226 ~~~~~~~g~D~vid~~g~  243 (349)
T 3pi7_A          226 REVMKAEQPRIFLDAVTG  243 (349)
T ss_dssp             HHHHHHHCCCEEEESSCH
T ss_pred             HHHhcCCCCcEEEECCCC
Confidence            5 6888999999999885

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=91.19  E-value=0.0075  Score=43.26  Aligned_cols=46  Identities=37%  Similarity=0.526  Sum_probs=37.9

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        53 ~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~c   98 (345)
T 3jv7_A           53 AYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPW-GCGACHAC   98 (345)
T ss_dssp             CSCSSEECCSEEEEEEEEECTTCCSCCTTCEEEECCSC-CCSSSHHH
T ss_pred             CCCCCcccCcccEEEEEEECCCCCCCCCCCEEEEecCC-CCCCChHH
Confidence            45789999999999999999999999999999886544 45555443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=91.17  E-value=0.011  Score=42.82  Aligned_cols=143  Identities=15%  Similarity=0.138  Sum_probs=81.9

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc----------------------cccccccccccCCEEEEEcC
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV----------------------NSCQDCNFASIAGVYVIVEV   61 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~----------------------~~~~~~~~~~~~g~~v~~g~   61 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.+..                      ..+++++|+...... ++.+
T Consensus        80 ~~~~P~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~-~~~i  158 (363)
T 3uog_A           80 DLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGW-FVAA  158 (363)
T ss_dssp             CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGG-EEEC
T ss_pred             CCCCCcCcccceEEEEEEECCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHH-eEEC
Confidence            35789999999999999999999999999999876321                      012344444332221 1234


Q ss_pred             CCceeeeeh------------hhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHH
Q 040822           62 PKEVKFKTV------------NLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLE  123 (158)
Q Consensus        62 ~~~~~~~~~------------~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~  123 (158)
                      |+.+++..+            .+.      .++..++.. .+   .....++++++..+++++.....-    +.++.++
T Consensus       159 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G---~vG~~a~qla~~~Ga~Vi~~~~~~----~~~~~~~  230 (363)
T 3uog_A          159 PKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQG-TG---GVALFGLQIAKATGAEVIVTSSSR----EKLDRAF  230 (363)
T ss_dssp             CTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEES-SB---HHHHHHHHHHHHTTCEEEEEESCH----HHHHHHH
T ss_pred             CCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEEC-CC---HHHHHHHHHHHHcCCEEEEEecCc----hhHHHHH
Confidence            433222111            110      112222222 23   345788999999888654332222    2233333


Q ss_pred             cCCcceeEEEEe-----Ccccc-cCCccCcCccccCCCCC
Q 040822          124 NRDVKYRFVIDI-----GQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       124 ~~~~~~k~vl~~-----~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      +...  ..+++.     .+.++ +|+++|+|+|||++|++
T Consensus       231 ~lGa--~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~  268 (363)
T 3uog_A          231 ALGA--DHGINRLEEDWVERVYALTGDRGADHILEIAGGA  268 (363)
T ss_dssp             HHTC--SEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSS
T ss_pred             HcCC--CEEEcCCcccHHHHHHHHhCCCCceEEEECCChH
Confidence            3233  223342     22355 78899999999998854

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=91.10  E-value=0.34  Score=34.82  Aligned_cols=144  Identities=17%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------hhh
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------NLI   73 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~~~   73 (158)
                      ++|.++|||++|+|+++|++|++|++||||++.... .+++++|+......+ +.+|+.+++..+            .+.
T Consensus        83 ~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~G~~aey~~v~~~~~-~~iP~~l~~~~Aa~l~~~~~ta~~~l~  160 (357)
T 1zsy_A           83 ELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAG-LGTWRTEAVFSEEAL-IQVPSDIPLQSAATLGVNPCTAYRMLM  160 (357)
T ss_dssp             CSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSSC-SCCSBSEEEEEGGGE-EEECSSSCHHHHHHTTSHHHHHHHHHH
T ss_pred             CCCccccceEEEEEEEeCCCCCCCCCCCEEEEcCCC-CccceeEEecCHHHc-EECCCCCCHHHHhhhcccHHHHHHHHH
Confidence            579999999999999999999999999999876532 345677765443322 234432222111            110


Q ss_pred             h------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe----Ccccc-cC
Q 040822           74 M------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI----GQHLE-LK  142 (158)
Q Consensus        74 ~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~----~~~~~-~t  142 (158)
                      .      ++..++..  + +-.....++|+++..+++.++.+-+.++.++..+.+++....  .+++.    .+++. .+
T Consensus       161 ~~~~~~~g~~VlV~G--a-~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~--~vi~~~~~~~~~~~~~~  235 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNA--S-NSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE--HVITEEELRRPEMKNFF  235 (357)
T ss_dssp             HSSCCCTTCEEEESS--T-TSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS--EEEEHHHHHSGGGGGTT
T ss_pred             HHhccCCCCEEEEeC--C-cCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc--EEEecCcchHHHHHHHH
Confidence            0      11111111  1 134457889999988887665554444444445555444432  23443    23455 66


Q ss_pred             Ccc-CcCccccCCCC
Q 040822          143 PRV-GPWSCMDKIPS  156 (158)
Q Consensus       143 ~g~-g~d~v~d~~~~  156 (158)
                      ++. |+|+|||++|+
T Consensus       236 ~~~~~~Dvvid~~g~  250 (357)
T 1zsy_A          236 KDMPQPRLALNCVGG  250 (357)
T ss_dssp             SSSCCCSEEEESSCH
T ss_pred             hCCCCceEEEECCCc
Confidence            654 69999999985

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.21  E-value=0.016  Score=41.33  Aligned_cols=140  Identities=14%  Similarity=0.133  Sum_probs=84.0

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC-CEEEEEcCCCceeeee---h-hhh-----
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA-GVYVIVEVPKEVKFKT---V-NLI-----   73 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~-g~~v~~g~~~~~~~~~---~-~~~-----   73 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++...   +++++|+... ... +..+|+.+++..   + .+.     
T Consensus        60 ~~~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~---G~~aey~~v~~~~~-~~~~P~~~~~~~~~~aa~~~~~~~t  135 (334)
T 3qwb_A           60 PCEKPYVLGREASGTVVAKGKGVTNFEVGDQVAYISN---STFAQYSKISSQGP-VMKLPKGTSDEELKLYAAGLLQVLT  135 (334)
T ss_dssp             CCCSSEECCSEEEEEEEEECTTCCSCCTTCEEEEECS---SCSBSEEEEETTSS-EEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccccceEEEEEEECCCCCCCCCCCEEEEeeC---CcceEEEEecCcce-EEECCCCCCHHHhhhhhhhhhHHHH
Confidence            4567999999999999999999999999999987653   3566665443 332 334563333322   1 010     


Q ss_pred             ------------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----C
Q 040822           74 ------------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----G  136 (158)
Q Consensus        74 ------------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~  136 (158)
                                  .+...++.  .+ +-.....++++++..+++++.....    ++.++.+++...  ..+++.     .
T Consensus       136 a~~~l~~~~~~~~g~~vlV~--Ga-~g~iG~~~~~~a~~~Ga~Vi~~~~~----~~~~~~~~~~ga--~~~~~~~~~~~~  206 (334)
T 3qwb_A          136 ALSFTNEAYHVKKGDYVLLF--AA-AGGVGLILNQLLKMKGAHTIAVAST----DEKLKIAKEYGA--EYLINASKEDIL  206 (334)
T ss_dssp             HHHHHHTTSCCCTTCEEEES--ST-TBHHHHHHHHHHHHTTCEEEEEESS----HHHHHHHHHTTC--SEEEETTTSCHH
T ss_pred             HHHHHHHhccCCCCCEEEEE--CC-CCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHcCC--cEEEeCCCchHH
Confidence                        01111111  11 2234578889999888865432222    223333433333  223443     2


Q ss_pred             cccc-cCCccCcCccccCCCC
Q 040822          137 QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       137 ~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      +.+. .++++|+|+|||++|+
T Consensus       207 ~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          207 RQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             HHHHHHTTTSCEEEEEECCGG
T ss_pred             HHHHHHhCCCCceEEEECCCh
Confidence            3355 7889999999999885

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=89.83  E-value=0.02  Score=41.64  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=36.1

Q ss_pred             CCCCccccccccEEEEEeCCCCC------CCCCCCEEEecCCccccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVK------CFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~------~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      .++|.++|||++|+|+++| +|+      +|++||||++.+.. .|+.|.+|+
T Consensus        69 ~~~P~v~GhE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~~~-~cg~C~~C~  119 (380)
T 1vj0_A           69 VPLPIILGHEGAGRVVEVN-GEKRDLNGELLKPGDLIVWNRGI-TCGECYWCK  119 (380)
T ss_dssp             CCSSBCCCCEEEEEEEEES-SCCBCTTSCBCCTTCEEEECSEE-CCSSSHHHH
T ss_pred             CCCCcccCcCcEEEEEEeC-CccccccCCCCCCCCEEEEcccC-CCCCCHHHh
Confidence            4679999999999999999 999      99999999876533 455444443

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=89.74  E-value=0.032  Score=40.01  Aligned_cols=140  Identities=17%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc---cccccccccccCCEEEEEcCCCceeeeeh-----------
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV---NSCQDCNFASIAGVYVIVEVPKEVKFKTV-----------   70 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~---~~~~~~~~~~~~g~~v~~g~~~~~~~~~~-----------   70 (158)
                      .++|.++|||++|+|+++|++|++|++||||++....   ..+++++|+......+ ..+|+.+++..+           
T Consensus        61 ~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~-~~~P~~~~~~~aa~l~~~~~ta~  139 (343)
T 3gaz_A           61 QPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLL-ASKPAALTMRQASVLPLVFITAW  139 (343)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCSSTTCCCSSBSEEEEEGGGE-EECCTTSCHHHHHTSHHHHHHHH
T ss_pred             CCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeCCCCCCCcceeeEEEecHHHe-eeCCCCCCHHHHHHhhhhHHHHH
Confidence            5689999999999999999999999999999876421   1245666665443322 234532222111           


Q ss_pred             -hhhh------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE----eCccc
Q 040822           71 -NLIM------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID----IGQHL  139 (158)
Q Consensus        71 -~~~~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~----~~~~~  139 (158)
                       .+..      +...++..  + +-.....++++++..+++++.. .+-++    ++.+++.....   ++    +.+.+
T Consensus       140 ~~l~~~~~~~~g~~VlV~G--a-~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~----~~~~~~lGa~~---i~~~~~~~~~~  208 (343)
T 3gaz_A          140 EGLVDRAQVQDGQTVLIQG--G-GGGVGHVAIQIALARGARVFAT-ARGSD----LEYVRDLGATP---IDASREPEDYA  208 (343)
T ss_dssp             HHHTTTTCCCTTCEEEEET--T-TSHHHHHHHHHHHHTTCEEEEE-ECHHH----HHHHHHHTSEE---EETTSCHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEec--C-CCHHHHHHHHHHHHCCCEEEEE-eCHHH----HHHHHHcCCCE---eccCCCHHHHH
Confidence             1100      11111111  1 2234578899999988875544 33222    33333333332   23    22234


Q ss_pred             c-cCCccCcCccccCCCC
Q 040822          140 E-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       140 ~-~t~g~g~d~v~d~~~~  156 (158)
                      . .|+++|+|+|||++|+
T Consensus       209 ~~~~~~~g~D~vid~~g~  226 (343)
T 3gaz_A          209 AEHTAGQGFDLVYDTLGG  226 (343)
T ss_dssp             HHHHTTSCEEEEEESSCT
T ss_pred             HHHhcCCCceEEEECCCc
Confidence            4 6888999999999986

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=89.68  E-value=0.028  Score=40.35  Aligned_cols=46  Identities=37%  Similarity=0.611  Sum_probs=37.2

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+
T Consensus        59 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~C~  104 (348)
T 2d8a_A           59 IKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHI-VCGKCYACR  104 (348)
T ss_dssp             CCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECCEE-CCSCCC---
T ss_pred             CCCCCccCccceEEEEEECCCCCcCCCCCEEEEcCCC-CCCCChhhh
Confidence            4679999999999999999999999999999876544 566666654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=87.85  E-value=0.028  Score=40.42  Aligned_cols=141  Identities=16%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------h
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------N   71 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~   71 (158)
                      ++++|.++|||++|+|+++|++|++|++||||++...  .+++++|+...... ++.+|+.+++..+            .
T Consensus        82 ~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--~G~~aey~~v~~~~-~~~~P~~~~~~~aa~l~~~~~ta~~~  158 (353)
T 4dup_A           82 PKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLAN--GGAYAEYCLLPAGQ-ILPFPKGYDAVKAAALPETFFTVWAN  158 (353)
T ss_dssp             CTTSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEECS--SCCSBSEEEEEGGG-EEECCTTCCHHHHHTSHHHHHHHHHH
T ss_pred             CCCCCCccccccEEEEEEECCCCCCCCCCCEEEEecC--CCceeeEEEEcHHH-cEeCCCCCCHHHHhhhhhHHHHHHHH
Confidence            4467999999999999999999999999999987643  24566666544332 2345533332111            1


Q ss_pred             hhh------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC-----cccc
Q 040822           72 LIM------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG-----QHLE  140 (158)
Q Consensus        72 ~~~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~-----~~~~  140 (158)
                      +..      +...+  ...+ +-.....++++++..+++++....+-++.    +.+++...  ..+++..     +.+.
T Consensus       159 l~~~~~~~~g~~Vl--V~Gg-~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~----~~~~~lGa--~~~~~~~~~~~~~~~~  229 (353)
T 4dup_A          159 LFQMAGLTEGESVL--IHGG-TSGIGTTAIQLARAFGAEVYATAGSTGKC----EACERLGA--KRGINYRSEDFAAVIK  229 (353)
T ss_dssp             HTTTTCCCTTCEEE--ESST-TSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHHTC--SEEEETTTSCHHHHHH
T ss_pred             HHHhcCCCCCCEEE--EEcC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHhcCC--CEEEeCCchHHHHHHH
Confidence            101      11111  1112 33455788999998888754333222222    32322222  2233432     3344


Q ss_pred             -cCCccCcCccccCCCCC
Q 040822          141 -LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       141 -~t~g~g~d~v~d~~~~~  157 (158)
                       .+ ++|+|+|||++|++
T Consensus       230 ~~~-~~g~Dvvid~~g~~  246 (353)
T 4dup_A          230 AET-GQGVDIILDMIGAA  246 (353)
T ss_dssp             HHH-SSCEEEEEESCCGG
T ss_pred             HHh-CCCceEEEECCCHH
Confidence             56 78999999999863

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=87.39  E-value=0.036  Score=41.38  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=30.2

Q ss_pred             CCC-ccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822            6 LIE-NCMGHEIVGAVKEVGSNVKCFEVGDRVGVG   38 (158)
Q Consensus         6 ~~p-~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   38 (158)
                      ++| .++|||++|+|+++|++|++|++||||++.
T Consensus       115 ~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~  148 (456)
T 3krt_A          115 DLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAH  148 (456)
T ss_dssp             CCSEEECCSCCEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             CCCcccccceeEEEEEEECCCCCCCCCCCEEEEe
Confidence            567 699999999999999999999999999864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=87.19  E-value=0.043  Score=39.86  Aligned_cols=47  Identities=34%  Similarity=0.608  Sum_probs=38.6

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+
T Consensus        59 ~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~-~Cg~C~~C~  105 (378)
T 3uko_A           59 EGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQA-ECRECKFCK  105 (378)
T ss_dssp             TCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSC-CCSSSHHHH
T ss_pred             CCCCCccCCccceEEEEEeCCCCCcCCCCCEEEEecCC-CCCCChhhh
Confidence            35689999999999999999999999999999876543 566555543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=85.06  E-value=0.084  Score=38.20  Aligned_cols=45  Identities=33%  Similarity=0.573  Sum_probs=37.2

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        60 ~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~-~Cg~C~~C  104 (373)
T 1p0f_A           60 SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVP-QCGSCRAC  104 (373)
T ss_dssp             CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSC-CCSSSHHH
T ss_pred             CCCCcccCcCceEEEEEECCCCCccCCCCEEEECCCC-CCCCChhh
Confidence            4679999999999999999999999999999876543 45555443

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=84.19  E-value=0.62  Score=32.92  Aligned_cols=140  Identities=17%  Similarity=0.144  Sum_probs=77.4

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCC----ccccccccccccCCEEEEEcCCCceeeeehhh--------
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY----VNSCQDCNFASIAGVYVIVEVPKEVKFKTVNL--------   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~----~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~--------   72 (158)
                      +++|.++|||++|+|+++  ++++|++||||++...    ...+++++|+......+ +.+|+.+++..+..        
T Consensus        58 ~~~p~v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~-~~~P~~l~~~~aa~~~~~~~ta  134 (328)
T 1xa0_A           58 KTYPFVPGIDLAGVVVSS--QHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWL-VPLPKGLTLKEAMAIGTAGFTA  134 (328)
T ss_dssp             CSSSBCCCSEEEEEEEEC--CSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGC-EECCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCcccCcceEEEEEec--CCCCCCCCCEEEEccccCCCCCCccceeEEEechHHe-EECCCCCCHHHhhhhhhhHHHH
Confidence            467999999999999995  5789999999987532    11245667665553322 33553333211110        


Q ss_pred             ----h--------hcc-ceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc--
Q 040822           73 ----I--------MEM-RTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ--  137 (158)
Q Consensus        73 ----~--------~~~-~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~--  137 (158)
                          .        .+. ..++..  + +-.....++|+++..+++++....+-++.+.+    ++....  .+++..+  
T Consensus       135 ~~~l~~~~~~~~~~g~~~VlV~G--a-~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~----~~lGa~--~~i~~~~~~  205 (328)
T 1xa0_A          135 ALSIHRLEEHGLTPERGPVLVTG--A-TGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL----RVLGAK--EVLAREDVM  205 (328)
T ss_dssp             HHHHHHHHHTTCCGGGCCEEESS--T-TSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH----HHTTCS--EEEECC---
T ss_pred             HHHHHHHhhcCCCCCCceEEEec--C-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHcCCc--EEEecCCcH
Confidence                0        011 111111  1 23455788999998888754433333444433    222222  2233322  


Q ss_pred             --ccc-cCCccCcCccccCCCCC
Q 040822          138 --HLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus       138 --~~~-~t~g~g~d~v~d~~~~~  157 (158)
                        .+. .+ +.++|+|||++|++
T Consensus       206 ~~~~~~~~-~~~~d~vid~~g~~  227 (328)
T 1xa0_A          206 AERIRPLD-KQRWAAAVDPVGGR  227 (328)
T ss_dssp             ------CC-SCCEEEEEECSTTT
T ss_pred             HHHHHHhc-CCcccEEEECCcHH
Confidence              234 44 45899999999864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=84.09  E-value=0.1  Score=37.85  Aligned_cols=45  Identities=33%  Similarity=0.569  Sum_probs=37.0

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        59 ~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~-~Cg~C~~C  103 (376)
T 1e3i_A           59 ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAP-QCKRCKLC  103 (376)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSC-CCSSSHHH
T ss_pred             CCCCcccCccccEEEEEECCCCccCCCCCEEEECCcC-CCCCCccc
Confidence            3579999999999999999999999999999876543 45555444

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=83.98  E-value=0.087  Score=37.74  Aligned_cols=142  Identities=15%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccCCEEEEEcCCCceeeeeh------------
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIAGVYVIVEVPKEVKFKTV------------   70 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------   70 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.... ..+++++|+...... +..+|+.+++..+            
T Consensus        56 ~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~G~~aey~~v~~~~-~~~iP~~~~~~~aa~~~~~~~ta~~  134 (346)
T 3fbg_A           56 VSKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERL-VAKAPKNISAEQAVSLPLTGITAYE  134 (346)
T ss_dssp             CSSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSSBSEEEEEGGG-EEECCSSSCHHHHTTSHHHHHHHHH
T ss_pred             CCCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcCCCCCCcceeEEEEEChHH-eEECCCCCCHHHhhhcchhHHHHHH
Confidence            35789999999999999999999999999999875421 134566666544332 2234532222110            


Q ss_pred             hhh------------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC--
Q 040822           71 NLI------------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG--  136 (158)
Q Consensus        71 ~~~------------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~--  136 (158)
                      .+.            .+...++  ..+ +-.....++++++..+++++....    -++.++.+++....  .+++..  
T Consensus       135 ~l~~~~~~~~~~~~~~g~~VlV--~gg-~G~vG~~a~qla~~~Ga~Vi~~~~----~~~~~~~~~~lGa~--~vi~~~~~  205 (346)
T 3fbg_A          135 TLFDVFGISRNRNENEGKTLLI--ING-AGGVGSIATQIAKAYGLRVITTAS----RNETIEWTKKMGAD--IVLNHKES  205 (346)
T ss_dssp             HHHTTSCCCSSHHHHTTCEEEE--EST-TSHHHHHHHHHHHHTTCEEEEECC----SHHHHHHHHHHTCS--EEECTTSC
T ss_pred             HHHHhcCCccccccCCCCEEEE--EcC-CCHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHhcCCc--EEEECCcc
Confidence            111            1111121  112 334557889999988886443222    22233333332222  233333  


Q ss_pred             --cccc-cCCccCcCccccCCCC
Q 040822          137 --QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       137 --~~~~-~t~g~g~d~v~d~~~~  156 (158)
                        +.+. . .++|+|+|||++|+
T Consensus       206 ~~~~~~~~-~~~g~Dvv~d~~g~  227 (346)
T 3fbg_A          206 LLNQFKTQ-GIELVDYVFCTFNT  227 (346)
T ss_dssp             HHHHHHHH-TCCCEEEEEESSCH
T ss_pred             HHHHHHHh-CCCCccEEEECCCc
Confidence              3344 4 67899999999885

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=83.21  E-value=0.088  Score=38.04  Aligned_cols=144  Identities=15%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccCCEEEEEcCCCceeeeeh-----------hh
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIAGVYVIVEVPKEVKFKTV-----------NL   72 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~g~~v~~g~~~~~~~~~~-----------~~   72 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.... ..+++++|+...... +..+|+.+++..+           ..
T Consensus        79 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~-~~~iP~~~~~~~aa~l~~~~~ta~~a  157 (363)
T 4dvj_A           79 GTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERI-VGRKPKTLDWAEAAALPLTSITAWEA  157 (363)
T ss_dssp             -CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSCBSEEEEEGGG-CEECCTTSCHHHHHTSHHHHHHHHHH
T ss_pred             CCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCccceEEEEeCHHH-eeECCCCCCHHHHHhhhhHHHHHHHH
Confidence            4679999999999999999999999999999875321 134566665543222 2234432222110           00


Q ss_pred             hhcccee------EE----eeecCCHHHHHHHHHHHHh-CCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC----c
Q 040822           73 IMEMRTI------AG----SIVGGGTQETKEMVEFCAE-NGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG----Q  137 (158)
Q Consensus        73 ~~~~~~i------~g----~~~~~~~~~~~~~~~l~~~-~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~----~  137 (158)
                      +.....+      .+    ...+ .-.....++|+++. ++.+++..    +.-++.++.+++-..+  .+++..    +
T Consensus       158 l~~~~~~~~~~~~~g~~VlV~Ga-~G~vG~~a~qlak~~~g~~Vi~~----~~~~~~~~~~~~lGad--~vi~~~~~~~~  230 (363)
T 4dvj_A          158 FFDRLDVNKPVPGAAPAILIVGG-AGGVGSIAVQIARQRTDLTVIAT----ASRPETQEWVKSLGAH--HVIDHSKPLAA  230 (363)
T ss_dssp             HHTTSCTTSCCTTSEEEEEEEST-TSHHHHHHHHHHHHHCCSEEEEE----CSSHHHHHHHHHTTCS--EEECTTSCHHH
T ss_pred             HHHhhCcCcCcCCCCCEEEEECC-CCHHHHHHHHHHHHhcCCEEEEE----eCCHHHHHHHHHcCCC--EEEeCCCCHHH
Confidence            1111111      11    1111 22445778899987 67764332    2223334444443332  233433    3


Q ss_pred             ccccCCccCcCccccCCCC
Q 040822          138 HLELKPRVGPWSCMDKIPS  156 (158)
Q Consensus       138 ~~~~t~g~g~d~v~d~~~~  156 (158)
                      .+....++|+|+|||++|+
T Consensus       231 ~v~~~~~~g~Dvvid~~g~  249 (363)
T 4dvj_A          231 EVAALGLGAPAFVFSTTHT  249 (363)
T ss_dssp             HHHTTCSCCEEEEEECSCH
T ss_pred             HHHHhcCCCceEEEECCCc
Confidence            3442367899999999885

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=82.83  E-value=0.088  Score=38.06  Aligned_cols=44  Identities=30%  Similarity=0.528  Sum_probs=35.9

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF   49 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   49 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++.+ . .|+.|.+
T Consensus        56 ~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~-~-~Cg~C~~   99 (371)
T 1f8f_A           56 PVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-G-YCGKCTQ   99 (371)
T ss_dssp             CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECC-C-CCSSSHH
T ss_pred             CCCCCcccCcccceEEEEeCCCCCCCCCCCEEEecC-C-CCCCChh
Confidence            346799999999999999999999999999998754 2 4444443

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=82.50  E-value=0.1  Score=37.48  Aligned_cols=143  Identities=14%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             CCCCccccccccEEEEEeCCCC-CCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------h
Q 040822            5 SLIENCMGHEIVGAVKEVGSNV-KCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------N   71 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v-~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~   71 (158)
                      +++|.++|||++|+|+++|++| ++|++||||++...  .+++++|+...... ++.+|+.+++..+            .
T Consensus        77 ~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~~--~G~~aey~~v~~~~-~~~iP~~ls~~~aa~l~~~~~tA~~a  153 (354)
T 2j8z_A           77 PGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLP--GGGQAQYVTVPEGL-LMPIPEGLTLTQAAAIPEAWLTAFQL  153 (354)
T ss_dssp             TTSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEECS--SCCSBSEEEEEGGG-EEECCTTCCHHHHTTSHHHHHHHHHH
T ss_pred             CCCCcccceeeEEEEEEECCCcCCCCCCCCEEEEecC--CCcceeEEEeCHHH-cEECCCCCCHHHHHhccchHHHHHHH
Confidence            3579999999999999999999 99999999987643  24566766544332 2345533332111            1


Q ss_pred             hhh-ccc---eeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC-----cccc-c
Q 040822           72 LIM-EMR---TIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG-----QHLE-L  141 (158)
Q Consensus        72 ~~~-~~~---~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~-----~~~~-~  141 (158)
                      +.. ...   .......+ +-.....++++++..+.+++.....-++.+.+ +.+   ..  ..+++..     +.+. .
T Consensus       154 l~~~~~~~~g~~vlV~Ga-~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---g~--~~~~~~~~~~~~~~~~~~  226 (354)
T 2j8z_A          154 LHLVGNVQAGDYVLIHAG-LSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL---GA--AAGFNYKKEDFSEATLKF  226 (354)
T ss_dssp             HTTTSCCCTTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH---TC--SEEEETTTSCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc---CC--cEEEecCChHHHHHHHHH
Confidence            100 000   00111111 23445788899988887654332222222222 222   22  2233433     2344 6


Q ss_pred             CCccCcCccccCCCCC
Q 040822          142 KPRVGPWSCMDKIPSR  157 (158)
Q Consensus       142 t~g~g~d~v~d~~~~~  157 (158)
                      ++++++|++||++|++
T Consensus       227 ~~~~~~d~vi~~~G~~  242 (354)
T 2j8z_A          227 TKGAGVNLILDCIGGS  242 (354)
T ss_dssp             TTTSCEEEEEESSCGG
T ss_pred             hcCCCceEEEECCCch
Confidence            7778999999999863

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=81.61  E-value=0.18  Score=36.47  Aligned_cols=45  Identities=29%  Similarity=0.452  Sum_probs=37.3

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        58 ~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~-~Cg~C~~C  102 (373)
T 2fzw_A           58 GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIP-QCGECKFC  102 (373)
T ss_dssp             CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSC-CCSCSHHH
T ss_pred             CCCCccccccccEEEEEECCCCCCCCCCCEEEECCCC-CCCCChHH
Confidence            3579999999999999999999999999999876543 45555544

>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B

Probab=81.34  E-value=0.5  Score=27.22  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=26.4

Q ss_pred             cccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822           10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY   40 (158)
Q Consensus        10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~   40 (158)
                      +.|-.++|+|.=-|+..+-.++||+|+...+
T Consensus        36 I~GerGSG~I~lNGAAArl~~~GD~vII~aY   66 (96)
T 1vc3_B           36 LPGERGSGVIGINGAAAHLVKPGDLVILVAY   66 (96)
T ss_dssp             EEECTTTTCEEEEGGGGGTCCTTCEEEEEEE
T ss_pred             EEccCCCCeEEEchHHHccCCCCCEEEEEEC
Confidence            6777889999999998899999999976554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=81.16  E-value=0.54  Score=33.03  Aligned_cols=137  Identities=13%  Similarity=0.181  Sum_probs=79.9

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc-ccccccccccCCEEEEEcCCCceeeeehh-----------
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN-SCQDCNFASIAGVYVIVEVPKEVKFKTVN-----------   71 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~-----------   71 (158)
                      +.++|.++|||++|+|+++|++|++|++||||++..... .+++++|+...... ++.+|+.+++..+.           
T Consensus        55 ~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~-~~~iP~~~~~~~aa~l~~~~~ta~~  133 (315)
T 3goh_A           55 NWSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDR-VMTLPDNLSFERAAALPCPLLTAWQ  133 (315)
T ss_dssp             CCCTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEECCTTSCCSSBSEEEEETTS-EEECCTTSCHHHHHTSHHHHHHHHH
T ss_pred             cCCCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeCCCCCCcccccEEEEcHHH-hccCcCCCCHHHHhhCccHHHHHHH
Confidence            347899999999999999999999999999998765211 34566666544332 23455333322111           


Q ss_pred             -h-----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCc
Q 040822           72 -L-----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPR  144 (158)
Q Consensus        72 -~-----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g  144 (158)
                       +     ..++..++... +   .....++|+++..+++++... +-++.+.+.+ +   ..  ..+++  + .. +  +
T Consensus       134 al~~~~~~~g~~VlV~Ga-G---~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~-l---Ga--~~v~~--d-~~~v--~  197 (315)
T 3goh_A          134 AFEKIPLTKQREVLIVGF-G---AVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK-R---GV--RHLYR--E-PSQV--T  197 (315)
T ss_dssp             HHTTSCCCSCCEEEEECC-S---HHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH-H---TE--EEEES--S-GGGC--C
T ss_pred             HHhhcCCCCCCEEEEECC-C---HHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH-c---CC--CEEEc--C-HHHh--C
Confidence             1     01222222222 3   234778899998888765544 4444443322 2   22  22222  2 33 4  7


Q ss_pred             cCcCccccCCCCC
Q 040822          145 VGPWSCMDKIPSR  157 (158)
Q Consensus       145 ~g~d~v~d~~~~~  157 (158)
                      +|+|+|||++|++
T Consensus       198 ~g~Dvv~d~~g~~  210 (315)
T 3goh_A          198 QKYFAIFDAVNSQ  210 (315)
T ss_dssp             SCEEEEECC----
T ss_pred             CCccEEEECCCch
Confidence            8999999999864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=81.07  E-value=0.032  Score=39.92  Aligned_cols=45  Identities=31%  Similarity=0.527  Sum_probs=37.5

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        55 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~C   99 (343)
T 2dq4_A           55 IRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHI-VCHACPAC   99 (343)
T ss_dssp             CCSSEECCCEEEEEEEEECTTCCSSCTTCEEEECCEE-CCSCSHHH
T ss_pred             CCCCCcCCccceEEEEEECCCCCcCCCCCEEEECCCC-CCCCChhh
Confidence            4679999999999999999999999999999876543 45555544

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=80.88  E-value=0.21  Score=36.11  Aligned_cols=44  Identities=27%  Similarity=0.432  Sum_probs=36.4

Q ss_pred             CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      ++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        60 ~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~-~Cg~C~~C  103 (374)
T 2jhf_A           60 PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTP-QCGKCRVC  103 (374)
T ss_dssp             CSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSC-CCSCSHHH
T ss_pred             CCCcccCcCceEEEEEECCCCCCCCCCCEEEECCCC-CCCCCccc
Confidence            479999999999999999999999999999876543 45555443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=80.78  E-value=0.11  Score=37.37  Aligned_cols=45  Identities=44%  Similarity=0.744  Sum_probs=37.1

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA   50 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~   50 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus        58 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~C  102 (352)
T 1e3j_A           58 VKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGV-PCRRCQFC  102 (352)
T ss_dssp             CCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEE-CCSSSHHH
T ss_pred             CCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcC-CCCCChhh
Confidence            3579999999999999999999999999999876543 45555544

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=80.66  E-value=0.15  Score=36.43  Aligned_cols=43  Identities=33%  Similarity=0.618  Sum_probs=35.1

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccc
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCN   48 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~   48 (158)
                      .++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.
T Consensus        55 ~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~c~   97 (343)
T 2eih_A           55 LPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGL-SCGRCE   97 (343)
T ss_dssp             CCSSEECCSEEEEEEEEECSSCCSCCTTCEEEECCEE-CCSCSH
T ss_pred             CCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCC-Ccccch
Confidence            3679999999999999999999999999999865432 444443

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=80.63  E-value=0.21  Score=35.56  Aligned_cols=144  Identities=17%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC----------------C---EEEE-----
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA----------------G---VYVI-----   58 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~----------------g---~~v~-----   58 (158)
                      .+.++|+++|||++|+|+++|++|++|++||||++.... .|+.|..|+.+                |   .++.     
T Consensus        49 ~~~~~P~i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~~~-~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~  127 (346)
T 4a2c_A           49 GAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLL-PCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKN  127 (346)
T ss_dssp             CSSSSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCEE-CCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGG
T ss_pred             CCCCCCccccEEEEEEEEEECCCcccccCCCeEEeeecc-CCCCcccccCCccccCCCcccccCCCCcccccccccchhe
Confidence            356789999999999999999999999999999876543 34444332211                1   1111     


Q ss_pred             -EcCCCceeeeehhhh----------------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHH
Q 040822           59 -VEVPKEVKFKTVNLI----------------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALER  121 (158)
Q Consensus        59 -~g~~~~~~~~~~~~~----------------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~  121 (158)
                       +.+|+.+++..+.++                .++..++.. .+   .....++|+++..+...++.+-.-+   +.++.
T Consensus       128 ~~~iP~~l~~~~aa~l~~~~~~~~~~~~~~~~~g~~VlV~G-aG---~vG~~aiq~ak~~G~~~vi~~~~~~---~k~~~  200 (346)
T 4a2c_A          128 VFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIG-AG---TIGLLAIQCAVALGAKSVTAIDISS---EKLAL  200 (346)
T ss_dssp             EEECCTTSCGGGGGGHHHHHHHHHHHHHTTCCTTSEEEEEC-CS---HHHHHHHHHHHHTTCSEEEEEESCH---HHHHH
T ss_pred             EEECCCCCCHHHHHhchHHHHHHHHHHHhccCCCCEEEEEC-CC---CcchHHHHHHHHcCCcEEEEEechH---HHHHH
Confidence             234433333222111                122222221 12   2346788999998887654433322   33444


Q ss_pred             HHcCCcceeEEEEeC-----cccc-cCCccCcCccccCCCC
Q 040822          122 LENRDVKYRFVIDIG-----QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       122 ~~~~~~~~k~vl~~~-----~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      +++-...  .+++..     +.+. +|+++|+|+|+|++|+
T Consensus       201 a~~lGa~--~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~  239 (346)
T 4a2c_A          201 AKSFGAM--QTFNSSEMSAPQMQSVLRELRFNQLILETAGV  239 (346)
T ss_dssp             HHHTTCS--EEEETTTSCHHHHHHHHGGGCSSEEEEECSCS
T ss_pred             HHHcCCe--EEEeCCCCCHHHHHHhhcccCCcccccccccc
Confidence            4444443  233433     2344 7999999999999885

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=80.63  E-value=0.17  Score=36.10  Aligned_cols=47  Identities=36%  Similarity=0.745  Sum_probs=37.7

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF   49 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   49 (158)
                      .+.++|.++|||++|+|+++|++|++|++||||++.+....|+.|.+
T Consensus        50 ~~~~~p~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~g~~~~   96 (348)
T 4eez_A           50 FGNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEY   96 (348)
T ss_dssp             TCCCTTCBCCSEEEEEEEEECTTCCSCCTTCEEEEESEEECCSSSHH
T ss_pred             CCCCCCcccceeEEEEEEEECceeeecccCCeEeecccccccCcccc
Confidence            35678999999999999999999999999999977554433444443

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=80.50  E-value=0.34  Score=34.18  Aligned_cols=141  Identities=11%  Similarity=0.017  Sum_probs=80.2

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc----cccccccccccCCEEEEEcCCCceeeeeh---------
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV----NSCQDCNFASIAGVYVIVEVPKEVKFKTV---------   70 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~----~~~~~~~~~~~~g~~v~~g~~~~~~~~~~---------   70 (158)
                      +.++|.++|||++|+|+++|  +++|++||||++.++.    ..+++++|+...... ++.+|+.+++..+         
T Consensus        54 ~~~~p~v~G~E~~G~V~~~G--v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~-~~~iP~~~~~~~aa~l~~~~~t  130 (324)
T 3nx4_A           54 IRHFPMIPGIDFAGTVHASE--DPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDW-LVALPAGLSSRNAMIIGTAGFT  130 (324)
T ss_dssp             CCSSSBCCCSEEEEEEEEES--STTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGG-CEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCccccceeEEEEEEeC--CCCCCCCCEEEEcccccCCCCCCceeeEEecCHHH-cEECCCCCCHHHHHHhhhHHHH
Confidence            35789999999999999999  6899999999875421    134566666554332 2235533332111         


Q ss_pred             ---hhh---h-----ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc--
Q 040822           71 ---NLI---M-----EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ--  137 (158)
Q Consensus        71 ---~~~---~-----~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~--  137 (158)
                         .+.   .     +.-. .....+ +-.....++|+++..+++++....+-++.+.+.+ +   ..+  .+++..+  
T Consensus       131 a~~al~~~~~~~~~~~~g~-VlV~Ga-~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~-l---Ga~--~vi~~~~~~  202 (324)
T 3nx4_A          131 AMLCVMALEDAGIRPQDGE-VVVTGA-SGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS-L---GAN--RILSRDEFA  202 (324)
T ss_dssp             HHHHHHHHHHTTCCGGGCC-EEESST-TSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH-H---TCS--EEEEGGGSS
T ss_pred             HHHHHHHhhhcccCCCCCe-EEEECC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---CCC--EEEecCCHH
Confidence               110   0     1101 111111 2345578899999999876544434444443322 2   222  2334322  


Q ss_pred             ccc-cCCccCcCccccCCCC
Q 040822          138 HLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       138 ~~~-~t~g~g~d~v~d~~~~  156 (158)
                      .+. +++ .++|+|||++|+
T Consensus       203 ~~~~~~~-~~~d~v~d~~g~  221 (324)
T 3nx4_A          203 ESRPLEK-QLWAGAIDTVGD  221 (324)
T ss_dssp             CCCSSCC-CCEEEEEESSCH
T ss_pred             HHHhhcC-CCccEEEECCCc
Confidence            144 455 589999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	1e-05
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	7e-05
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	0.003

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 37  VGPYVNSCQDCNFASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEM 94
           V    N           G   +V  P       +  NLIM+ R IAGS++GG   ET+EM
Sbjct: 101 VAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG-IPETQEM 159

Query: 95  VEFCAENGI 103
           ++FCAE+GI
Sbjct: 160 LDFCAEHGI 168

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (89), Expect = 7e-05
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 28  CFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGG 86
              +         ++         + G  V + +P +          ++  +I+ S +G 
Sbjct: 92  FDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGS 151

Query: 87  GTQETKEMVEFCAENGI 103
             +E  ++++  +E  I
Sbjct: 152 -IKELNQLLKLVSEKDI 167

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 44  CQDCNFASIAGVYVIVEV-PKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAE 100
            Q    A   G   +V + P +      +++++   IAGSIVG    + +E ++F  E
Sbjct: 108 GQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGT-RADLQEALDFAGE 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.3
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.3
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.3
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.19
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.18
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.17
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.15
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.14
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.13
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.13
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.12
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.12
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.09
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.08
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.06
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.03
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.98
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	98.98
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	98.94
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.11
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	97.89
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.82
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.8
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.63
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.56
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.52
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.43
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.43
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.37
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.24
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.13
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.11
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.58
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.51
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.49
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.39
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.28
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.27
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.79
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	95.77
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.76
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.32
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.16
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.54
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.76
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.47
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.51
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	92.27
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.94
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.89
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	90.17
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	89.8
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.3
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	89.03
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.64
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.55
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.67
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.95
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	86.33
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.43
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.89
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	84.4
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.31
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.08
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	82.59
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	81.02

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.30  E-value=9.8e-13  Score=86.25  Aligned_cols=49  Identities=29%  Similarity=0.544  Sum_probs=40.9

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+.++|+++|||++|+|+++|++|++|++||||+. .+. .|+.|++|+.+
T Consensus        52 ~~~~~P~i~GHE~~G~V~~vG~~v~~~~vGDrVv~-~~~-~Cg~C~~C~~g  100 (194)
T d1f8fa1          52 YPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVL-SYG-YCGKCTQCNTG  100 (194)
T ss_dssp             SCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEE-CCC-CCSSSHHHHTT
T ss_pred             ccccCCcccccceEEEeeecCccceeEccCceeee-ecc-cccCChhhhCC
Confidence            35678999999999999999999999999999954 444 68888776544

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.30  E-value=1.2e-12  Score=84.59  Aligned_cols=48  Identities=38%  Similarity=0.335  Sum_probs=40.0

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASI   52 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~   52 (158)
                      +.++|+++|||++|+|+++|++|++|++||||+..+.. .|+.|.+|+.
T Consensus        50 ~~~~P~i~GhE~~G~V~~vG~~v~~~~vGdrV~v~~~~-~cg~c~~C~~   97 (177)
T d1jqba1          50 GDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTT-PDWRSLEVQA   97 (177)
T ss_dssp             CCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCC-CCSSSHHHHT
T ss_pred             CCCCCccCcceeeEEeeecccccceecCCCcEEEeeee-ccccccchhh
Confidence            45679999999999999999999999999999875544 6777666654

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=9.7e-13  Score=86.70  Aligned_cols=50  Identities=32%  Similarity=0.545  Sum_probs=43.1

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+.++|.++|||++|+|+++|++|++|++||||.+.... .|+.|++|+.+
T Consensus        56 ~~~~~P~v~GHE~~G~Vv~vG~~V~~~~vGdrV~v~~~~-~Cg~C~~C~~g  105 (201)
T d1kola1          56 TTAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNV-ACGRCRSCKEM  105 (201)
T ss_dssp             SCCCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEE-CCSSSHHHHTT
T ss_pred             cccccceeccceeeeeeeccccccccccccceeEEeeee-eccCChhhhCC
Confidence            456789999999999999999999999999999765544 78888888764

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=8.5e-12  Score=80.70  Aligned_cols=50  Identities=40%  Similarity=0.648  Sum_probs=42.2

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      ...+|+++|||++|+|+++|++|++|++||||...+....|+.|.+|+.+
T Consensus        51 ~~~~P~i~GhE~~G~V~~vG~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g  100 (179)
T d1uufa1          51 GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDG  100 (179)
T ss_dssp             CCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTT
T ss_pred             cccccccccccccccchhhccccccCCCCCEEEEcccccccCccccccCc
Confidence            45779999999999999999999999999999776655567777777654

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.9e-12  Score=78.19  Aligned_cols=63  Identities=25%  Similarity=0.433  Sum_probs=46.2

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceee
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF   67 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~   67 (158)
                      .++.+|.++|+|++|+|+++|++|++|++||||++.... .+++++|+...... +..+|+.++.
T Consensus        56 ~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~G~~ae~~~v~~~~-~~~iP~~ls~  118 (150)
T d1yb5a1          56 RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTI-SGGYAEYALAADHT-VYKLPEKLKP  118 (150)
T ss_dssp             CCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCCS-SCSSBSEEEEEGGG-EEECCTTCCC
T ss_pred             ccccccccCccceeeeeEeecceeeccccCccccccccc-cccccccccccccc-cccccCCCCH
Confidence            345779999999999999999999999999999876543 45677776554332 2335543333

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.17  E-value=1.1e-11  Score=80.16  Aligned_cols=49  Identities=33%  Similarity=0.634  Sum_probs=41.3

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      ..++|+++|||++|+|+++|+++++|++||||++.... .|+.|.+++.+
T Consensus        59 ~~~~P~v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~~~-~c~~c~~~~~g  107 (177)
T d1jvba1          59 GVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQ-GEGNCYYCRIG  107 (177)
T ss_dssp             CCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEE-CCSSSHHHHTT
T ss_pred             ccCCCccccceEEEEEeeeccCccccccCceEeeeecc-ccccccccccc
Confidence            45789999999999999999999999999999876654 67777766543

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.15  E-value=2e-11  Score=80.45  Aligned_cols=50  Identities=30%  Similarity=0.497  Sum_probs=42.0

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+.++|.++|||++|+|+++|++|++|++||||++.... .|+.|.+|+.+
T Consensus        57 ~~~~~P~v~GHE~~G~V~~vG~~V~~~~~GdrV~~~~~~-~c~~c~~c~~g  106 (202)
T d1e3ia1          57 KKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAP-QCKRCKLCLSP  106 (202)
T ss_dssp             SCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSC-CCSSSHHHHCT
T ss_pred             cccccccccccccceEEeeecCCceeccCCCEEEEEeec-cccccccccCC
Confidence            356789999999999999999999999999999776654 67777766554

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.14  E-value=2.5e-11  Score=79.69  Aligned_cols=50  Identities=30%  Similarity=0.497  Sum_probs=42.6

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|++++.+
T Consensus        57 ~~~~~P~i~GHE~~G~Vv~~G~~v~~~~~GdrV~~~~~~-~Cg~c~~c~~g  106 (198)
T d1p0fa1          57 IPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVP-QCGSCRACKSS  106 (198)
T ss_dssp             SCCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSC-CCSSSHHHHCT
T ss_pred             cccccccccceeeeeeeeecCcccccCcCCCEEEEEeec-ccccccccccc
Confidence            356789999999999999999999999999999876654 68888877654

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.13  E-value=1.8e-11  Score=79.16  Aligned_cols=47  Identities=43%  Similarity=0.694  Sum_probs=38.2

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS   51 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~   51 (158)
                      +.+.|+++|||++|+|+++|++|++|++||||++.... .|+.|..+.
T Consensus        54 ~~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~~~-~~~~c~~c~  100 (178)
T d1e3ja1          54 IVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGV-PCRRCQFCK  100 (178)
T ss_dssp             BCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEE-CCSSSHHHH
T ss_pred             cccCCeeeccccceEEEecCcccCCCCCCCEEEECccc-ccCCccccc
Confidence            45678999999999999999999999999999876544 455555443

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-11  Score=79.90  Aligned_cols=49  Identities=33%  Similarity=0.516  Sum_probs=41.4

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      +.++|+++|||++|+|+++|++|++|++||||++.+.. .|+.|.+++.+
T Consensus        60 ~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~c~~c~~G  108 (185)
T d1pl8a1          60 IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGA-PRENDEFCKMG  108 (185)
T ss_dssp             ECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEE-CSSCCHHHHTT
T ss_pred             CCCCCeeeeeeeeeeEEEeccceeeecccccceeccee-ccccchhhccc
Confidence            45679999999999999999999999999999876544 67777776654

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=2.7e-11  Score=78.03  Aligned_cols=50  Identities=34%  Similarity=0.479  Sum_probs=40.5

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      +..+|.++|||++|+|+++|++|++|++||||++......|+.|.+++.+
T Consensus        57 ~~~~P~i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g  106 (175)
T d1llua1          57 KPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTG  106 (175)
T ss_dssp             CCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTT
T ss_pred             cccCCcCCCCcceEEEEEeCCCccccccCCEEEeccccccCCccccccCC
Confidence            45689999999999999999999999999999775544456666665543

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.12  E-value=3.4e-11  Score=79.07  Aligned_cols=49  Identities=24%  Similarity=0.357  Sum_probs=40.0

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccccc
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASI   52 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~   52 (158)
                      .+.++|.++|||++|+|+++|++|+++++||||++.... .|+.|..++.
T Consensus        57 ~~~~~P~i~GHE~~G~Vv~vG~~v~~~~vGdrV~v~~~~-~c~~c~~c~~  105 (198)
T d2jhfa1          57 LVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTP-QCGKCRVCKH  105 (198)
T ss_dssp             SCCCSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSC-CCSCSHHHHS
T ss_pred             cccccceecccceeEEEEecCccccCcCCCCEEEEeeee-cccccccccC
Confidence            356789999999999999999999999999999776654 5655555443

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=6.9e-11  Score=73.99  Aligned_cols=48  Identities=29%  Similarity=0.371  Sum_probs=37.7

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASI   52 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~   52 (158)
                      ++++|.++|+|++|+|+++|++|++|++||||+..... .+++++++..
T Consensus        53 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~G~~ae~~~v  100 (147)
T d1qora1          53 PPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSA-LGAYSSVHNI  100 (147)
T ss_dssp             CSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEESCCS-SCCSBSEEEE
T ss_pred             CCcceeeeccccccceeeeeeecccccccceeeeeccc-cccceeEEEE
Confidence            46789999999999999999999999999999654332 3345555543

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.08  E-value=5.5e-11  Score=76.31  Aligned_cols=48  Identities=31%  Similarity=0.451  Sum_probs=39.8

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASI   52 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~   52 (158)
                      .+++|+++|||++|+|+++|++|++|++||||++.+.. .|+.|..++.
T Consensus        54 ~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~~~~c~~  101 (171)
T d1h2ba1          54 QPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAV-TDGTCLACRA  101 (171)
T ss_dssp             CCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCB-CCSCSHHHHT
T ss_pred             CCccccccceeeeeeeecccCCCCcCCCCCEEEEcCcc-CCCCcccccc
Confidence            35689999999999999999999999999999876654 5666665543

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=6.2e-11  Score=77.37  Aligned_cols=49  Identities=39%  Similarity=0.668  Sum_probs=38.9

Q ss_pred             CCCCCccccccccEEEEEeCCCC-CCCCCCCEEEecCCcccccccccccc
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNV-KCFEVGDRVGVGPYVNSCQDCNFASI   52 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v-~~~~vGdrV~~~~~~~~~~~~~~~~~   52 (158)
                      +.++|+++|||++|+|+++|+++ +.|++||||........|+.|..|+.
T Consensus        59 ~~~~P~i~GHE~~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~  108 (192)
T d1piwa1          59 NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKN  108 (192)
T ss_dssp             CCCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHT
T ss_pred             CCCCCcCcccccccchhhcccccccccCCCCeeeEeeeccCCCCchhhhc
Confidence            46789999999999999999988 67999999976654445666665543

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.03  E-value=1.2e-10  Score=76.45  Aligned_cols=50  Identities=28%  Similarity=0.464  Sum_probs=42.2

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+.++|.++|||++|+|+++|+++++|++||||+..... .|+.|.+|+.+
T Consensus        58 ~~~~~p~i~GhE~~G~v~~vG~~v~~~~~GdrV~~~~~~-~cg~c~~C~~g  107 (199)
T d1cdoa1          58 HKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFIS-QCGECRFCQSP  107 (199)
T ss_dssp             CTTSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSC-CCSSSHHHHCT
T ss_pred             cccccccccccccceEEEEEcCCCceecCCCEEEEeeec-cccccccccCC
Confidence            456789999999999999999999999999999776654 67777776544

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.98  E-value=2.5e-10  Score=74.75  Aligned_cols=50  Identities=28%  Similarity=0.403  Sum_probs=41.7

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+.++|+++|||++|+|.++|++|+.+++||||+..... .|+.|.+++.+
T Consensus        56 ~~~~~p~v~GhE~~G~V~~vG~~V~~~~~GdrV~v~~~~-~cg~c~~c~~g  105 (197)
T d2fzwa1          56 PEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIP-QCGECKFCLNP  105 (197)
T ss_dssp             TTCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSC-CCSCSHHHHCT
T ss_pred             ccccccccCCcceeeEEEeecCCceecCCCCEEEEcccc-ccccccccccC
Confidence            456789999999999999999999999999999876654 67777665544

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=2.1e-10  Score=74.28  Aligned_cols=48  Identities=23%  Similarity=0.453  Sum_probs=40.1

Q ss_pred             CCCCccccccccEEEEEeCCCCC-----CCCCCCEEEecCCccccccccccccC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVK-----CFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~-----~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .++|+++|||++|+|+++|++|+     .+++||||+..+.. .|+.|.+|+.+
T Consensus        56 ~~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~-~Cg~C~~C~~g  108 (184)
T d1vj0a1          56 VPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGI-TCGECYWCKVS  108 (184)
T ss_dssp             CCSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEE-CCSSSHHHHTS
T ss_pred             cccccccceeeeeeeeEEeccccccccccccceeeeEecccc-ccccChhHhCc
Confidence            46899999999999999999885     46899999876654 78888877665

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.94  E-value=4.2e-10  Score=72.06  Aligned_cols=47  Identities=38%  Similarity=0.682  Sum_probs=37.1

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF   49 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   49 (158)
                      ...++|.++|||++|+|+++|++++++++||||++......|+.|..
T Consensus        51 ~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~~~~~~   97 (171)
T d1rjwa1          51 VKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDY   97 (171)
T ss_dssp             SCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHH
T ss_pred             cccccccccCCEEEEEEEEecccccCceeeeEEeecccccccccccc
Confidence            45678999999999999999999999999999976543323444433

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.6e-06  Score=53.55  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=43.6

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc----ccccccccccCCEEEEEcCCCceeee
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN----SCQDCNFASIAGVYVIVEVPKEVKFK   68 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~----~~~~~~~~~~~g~~v~~g~~~~~~~~   68 (158)
                      ++++|+++|+|++|+|.++|.  ..|++||+|++.....    .+++++|+....+.++ .+|+.+++.
T Consensus        54 ~~~~p~v~G~e~~G~V~~~~~--~~~~~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv-~lP~~ls~~  119 (146)
T d1o89a1          54 IRNFPMIPGIDFAGTVRTSED--PRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLV-AMPQGQAAK  119 (146)
T ss_dssp             CCSSSBCCCSEEEEEEEEECS--TTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCE-ECCTTSCCE
T ss_pred             ccccceeccccccccceeecc--CCccceeeEEeecccceecCCCcceeeeeeeeeeEE-ECCCCCCHH
Confidence            457799999999999999775  4799999998754321    3567777766644333 466555543

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.89  E-value=1.2e-05  Score=49.86  Aligned_cols=48  Identities=21%  Similarity=0.177  Sum_probs=35.4

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc----ccccccccccC
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN----SCQDCNFASIA   53 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~----~~~~~~~~~~~   53 (158)
                      +++.|+++|+|++|+|++  ..++.|++||+|++.....    .+++++|+...
T Consensus        57 ~~~~p~v~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~~~~~~G~~aEy~~v~  108 (152)
T d1xa0a1          57 VKTYPFVPGIDLAGVVVS--SQHPRFREGDEVIATGYEIGVTHFGGYSEYARLH  108 (152)
T ss_dssp             CCSSSBCCCSEEEEEEEE--CCSSSCCTTCEEEEESTTBTTTBCCSSBSEEEEC
T ss_pred             cccccceeeeeeeeeeec--cCCCccccCCEEEEecCccccccCCCcceeeeeh
Confidence            457899999999999998  5678899999998754321    23455555444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=1.4e-05  Score=50.29  Aligned_cols=57  Identities=16%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             ccccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc
Q 040822           47 CNFASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY  104 (158)
Q Consensus        47 ~~~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~  104 (158)
                      ...++++|+++++|.+ .+..++...++.+++++.|+..+ +..+++++++|+++++++
T Consensus       111 ~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g-~~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         111 PKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALG-SIKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             GGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCC-CHHHHHHHHHHHHHTTCC
T ss_pred             HHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeC-CHHHHHHHHHHHHhCCCC
Confidence            3567889999999988 67788888899999999999999 999999999999999874

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.80  E-value=1.1e-05  Score=50.89  Aligned_cols=49  Identities=27%  Similarity=0.067  Sum_probs=38.6

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      +...|.++|+|++|+|+++|.++.+++.||||+..... .+.+++|+...
T Consensus        69 ~~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~~~~-~g~~aey~~v~  117 (175)
T d1gu7a1          69 TTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVN-FGTWRTHALGN  117 (175)
T ss_dssp             CSSCBEECCSCCEEEEEEECTTCCSCCTTCEEEESSSC-CCCSBSEEEEE
T ss_pred             CCCCCcccccccccccccccccccccccccceeccccc-cccccceeeeh
Confidence            34668899999999999999999999999999765544 34456665444

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.63  E-value=2.1e-05  Score=47.44  Aligned_cols=38  Identities=18%  Similarity=0.066  Sum_probs=28.2

Q ss_pred             CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .++++|+++|+|++|+|           +||||++....  +++++|....
T Consensus        51 ~~~~~P~v~G~E~~G~V-----------vGd~V~~~~~~--G~~aey~~v~   88 (131)
T d1iz0a1          51 TRLHPPFIPGMEVVGVV-----------EGRRYAALVPQ--GGLAERVAVP   88 (131)
T ss_dssp             SCCCSSBCCCCEEEEEE-----------TTEEEEEECSS--CCSBSEEEEE
T ss_pred             ccccceeEeeeeeEEee-----------ccceEEEEecc--CccceeeeeC
Confidence            34578999999999999           49999876543  3556665544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.56  E-value=5.1e-05  Score=47.36  Aligned_cols=53  Identities=26%  Similarity=0.479  Sum_probs=48.0

Q ss_pred             cccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC
Q 040822           48 NFASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN  101 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~  101 (158)
                      ..++++|+++++|.+ .+.+++...++.+++++.|+..+ ++.+++++++|+++|
T Consensus       112 ~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~-~~~d~~e~l~l~~~G  165 (166)
T d1llua2         112 GMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVG-TRADLQEALDFAGEG  165 (166)
T ss_dssp             TTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSC-CHHHHHHHHHHHHTT
T ss_pred             HHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeec-CHHHHHHHHHHHHCc
Confidence            357889999999988 77889999999999999999999 999999999999876

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.52  E-value=4.7e-05  Score=47.89  Aligned_cols=55  Identities=25%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             ccccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCC
Q 040822           47 CNFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENG  102 (158)
Q Consensus        47 ~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~  102 (158)
                      -..++++|+++++|.+.+.+++...++.+++++.|++.+ ++.+++++++|+++|+
T Consensus       118 ~~~l~~~G~iv~~G~~~~~~~~~~~l~~k~~~i~Gs~~~-~~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         118 PYLLGRMGRLIIVGYGGELRFPTIRVISSEVSFEGSLVG-NYVELHELVTLALQGK  172 (172)
T ss_dssp             GGGEEEEEEEEECCCSSCCCCCHHHHHHTTCEEEECCSC-CHHHHHHHHHHHHTTS
T ss_pred             HHHHhCCCEEEEEeCcccccCCHHHHHhCCcEEEEEEec-CHHHHHHHHHHHHcCC
Confidence            345788999999998866788888999999999999999 9999999999999875

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.43  E-value=7.5e-05  Score=46.53  Aligned_cols=65  Identities=25%  Similarity=0.326  Sum_probs=45.1

Q ss_pred             CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc----ccccccccccCCEEEEEcCCCceeeeehh
Q 040822            4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN----SCQDCNFASIAGVYVIVEVPKEVKFKTVN   71 (158)
Q Consensus         4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~----~~~~~~~~~~~g~~v~~g~~~~~~~~~~~   71 (158)
                      ++..|.++|+|++|+|.+  +.+.++++||+|++.....    .+++++|+....+.+ +.+|+.+++..+.
T Consensus        57 ~~~~~~~~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l-~~iP~~ls~~~Aa  125 (162)
T d1tt7a1          57 VREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWL-VPLPQNLSLKEAM  125 (162)
T ss_dssp             CSSCSEECCSEEEEEEEE--CSSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGE-EECCTTCCHHHHH
T ss_pred             cccceeeeeeeccccccc--ccccccccceeeEeeeccceeccccccceEEEecHHHE-EECCCCCCHHHHH
Confidence            456789999999999998  5667899999997754321    346777776664443 3567666654443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=0.00011  Score=45.84  Aligned_cols=55  Identities=27%  Similarity=0.459  Sum_probs=49.8

Q ss_pred             ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc
Q 040822           49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY  104 (158)
Q Consensus        49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~  104 (158)
                      .++++|++++++.+ .+.+++...++.+++++.++..+ +..+++++++|+++|+++
T Consensus       113 ~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~-~~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         113 SIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVG-TRKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             HEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSC-CHHHHHHHHHHHHTTSCC
T ss_pred             HhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeC-CHHHHHHHHHHHHhCCCC
Confidence            36789999999988 78888999999999999999999 999999999999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.37  E-value=8.9e-05  Score=46.39  Aligned_cols=55  Identities=15%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             ccccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCC
Q 040822           47 CNFASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENG  102 (158)
Q Consensus        47 ~~~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~  102 (158)
                      ...++++|+++++|.+ .+.+++...++.+++++.|++.+ +..+++++++|+++|+
T Consensus       115 ~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~-~~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         115 PKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVG-NQSDFLGIMRLAEAGK  170 (170)
T ss_dssp             GGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSC-CHHHHHHHHHHHHTTS
T ss_pred             hhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecC-CHHHHHHHHHHHHcCC
Confidence            3467889999999988 77889999999999999999999 9999999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00012  Score=45.79  Aligned_cols=55  Identities=44%  Similarity=0.758  Sum_probs=44.4

Q ss_pred             cccccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCc
Q 040822           48 NFASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGI  103 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i  103 (158)
                      ..++++|+++++|.+ . ...++...++.+++++.|++.+ +..+++++++|+++++|
T Consensus       112 ~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~-~~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         112 TLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG-GIPETQEMLDFCAEHGI  168 (168)
T ss_dssp             TTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSC-CHHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeec-CHHHHHHHHHHHHHcCC
Confidence            357788999999987 3 4456778888899999999999 99999999999998765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00012  Score=46.33  Aligned_cols=67  Identities=9%  Similarity=-0.096  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccccCCccCcCccccCCCCC
Q 040822           89 QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLELKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~~t~g~g~d~v~d~~~~~  157 (158)
                      .....++|+++..+++++.+.-+-++.+.+.+.-.+...+++.  .+.+.+..++++|+|+|+|.+|++
T Consensus        43 GVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~--~~~~~~~~~~~~gvD~vid~vgg~  109 (176)
T d1xa0a2          43 GVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLARED--VMAERIRPLDKQRWAAAVDPVGGR  109 (176)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC-----------CCSCCEEEEEECSTTT
T ss_pred             hHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecch--hHHHHHHHhhccCcCEEEEcCCch
Confidence            4457899999999999877666666655433322222122222  123333478889999999999975

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=8.8e-06  Score=51.60  Aligned_cols=63  Identities=13%  Similarity=0.017  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cCCccCcCccccCCCCC
Q 040822           89 QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      .-...++|+++..++++++...+-++.+.+.    +....  .+++     +.++++ +|+|+|+|+|+|+++++
T Consensus        40 ~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~----~lGa~--~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~~  108 (179)
T d1qora2          40 GVGLIACQWAKALGAKLIGTVGTAQKAQSAL----KAGAW--QVINYREEDLVERLKEITGGKKVRVVYDSVGRD  108 (179)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----HHTCS--EEEETTTSCHHHHHHHHTTTCCEEEEEECSCGG
T ss_pred             ccchHHHHHHHHhCCeEeecccchHHHHHHH----hcCCe--EEEECCCCCHHHHHHHHhCCCCeEEEEeCccHH
Confidence            3457889999998887665444444443332    22221  2333     445677 89999999999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0003  Score=43.99  Aligned_cols=55  Identities=11%  Similarity=0.093  Sum_probs=46.8

Q ss_pred             cccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc
Q 040822           48 NFASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY  104 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~  104 (158)
                      ..++++|+++++|.+ .+.+++...++.+++++.|++.+  ..+++++++++++|+++
T Consensus       116 ~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~--~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         116 YATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRY--CNTWPVAISMLASKSVN  171 (171)
T ss_dssp             HHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSC--SSCHHHHHHHHHTTSCC
T ss_pred             HHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCC--HhHHHHHHHHHHcCCCC
Confidence            457889999999998 77788999999999999999755  34678999999999874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=2.4e-05  Score=49.67  Aligned_cols=64  Identities=14%  Similarity=0.050  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cCCccCcCccccCCCCC
Q 040822           88 TQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        88 ~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      -.....++|+++..++++++...+-    +..+.+++....  .+++     +.++++ +|+++|+|+|||++|++
T Consensus        36 g~vG~~~iqla~~~g~~vi~~~~~~----~~~~~l~~~Ga~--~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~  105 (183)
T d1pqwa_          36 GGVGMAAVSIAKMIGARIYTTAGSD----AKREMLSRLGVE--YVGDSRSVDFADEILELTDGYGVDVVLNSLAGE  105 (183)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEESSH----HHHHHHHTTCCS--EEEETTCSTHHHHHHHHTTTCCEEEEEECCCTH
T ss_pred             CCcccccchhhccccccceeeeccc----cccccccccccc--ccccCCccCHHHHHHHHhCCCCEEEEEecccch
Confidence            3455788999999988876544332    234445554443  2333     334566 79999999999999863

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.51  E-value=0.0018  Score=39.45  Aligned_cols=42  Identities=19%  Similarity=-0.009  Sum_probs=28.8

Q ss_pred             CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822            5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA   53 (158)
Q Consensus         5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~   53 (158)
                      .+...++..+.+|+|++  |+.++|++||+|++..     ++++|+...
T Consensus        57 ~~~g~~~~g~~vg~Vv~--S~~~~f~~GD~V~g~~-----gw~ey~v~~   98 (147)
T d1v3va1          57 LKEGAVMMGQQVARVVE--SKNSAFPAGSIVLAQS-----GWTTHFISD   98 (147)
T ss_dssp             SCTTSBCCCCEEEEEEE--ESCTTSCTTCEEEECC-----CSBSEEEEC
T ss_pred             cccCCccccceEEEEEE--eCCCcccCCCEEEEcc-----CCEeEEEec
Confidence            34455566688898887  6778999999997642     344555433

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.49  E-value=3.6e-05  Score=48.91  Aligned_cols=63  Identities=6%  Similarity=-0.085  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC-----cccc-cCCccCcCccccCCCCC
Q 040822           89 QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG-----QHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~-----~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      .....++|+++..+++++...-+-    +..+.++.....  .+++..     +.+. .+.++|+|+|||++|++
T Consensus        41 gvG~~aiqlak~~Ga~vi~~~~~~----~~~~~~~~~Ga~--~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~~  109 (182)
T d1v3va2          41 AVGSVVGQIAKLKGCKVVGAAGSD----EKIAYLKQIGFD--AAFNYKTVNSLEEALKKASPDGYDCYFDNVGGE  109 (182)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCS--EEEETTSCSCHHHHHHHHCTTCEEEEEESSCHH
T ss_pred             chhHHHHHHHHccCCEEEEeCCCH----HHHHHHHhhhhh--hhcccccccHHHHHHHHhhcCCCceeEEecCch
Confidence            455789999999999876544332    234444444432  223322     2344 78889999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.39  E-value=0.0016  Score=40.39  Aligned_cols=53  Identities=17%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             cccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCC
Q 040822           48 NFASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENG  102 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~  102 (158)
                      ..++++|+++++|.+ .+.+++...++.+++++.|++.+  ..+++++++|+++|+
T Consensus       117 ~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~--~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         117 NITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRY--CNDYPIALEMVASGR  170 (170)
T ss_dssp             HHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSC--SSCHHHHHHHHHTTS
T ss_pred             HHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECC--HHHHHHHHHHHHcCC
Confidence            357899999999988 67788888899999999998755  447888999998874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.28  E-value=0.0019  Score=40.34  Aligned_cols=53  Identities=23%  Similarity=0.395  Sum_probs=43.6

Q ss_pred             ccccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCC
Q 040822           49 FASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENG  102 (158)
Q Consensus        49 ~~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~  102 (158)
                      .++++|+++++|.+   ...+++...++.+++++.|++.+ +   ..+++++++|+++|+
T Consensus       116 ~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g-~~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         116 ALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG-SGSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             TEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG-GSCHHHHHHHHHHHHHTTS
T ss_pred             cccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEec-CCChHHHHHHHHHHHHcCC
Confidence            47889999999986   35678888999999999999865 4   466889999998874

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.27  E-value=0.00039  Score=43.44  Aligned_cols=63  Identities=10%  Similarity=-0.087  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe----CcccccCCccCcCccccCCCCC
Q 040822           89 QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI----GQHLELKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~----~~~~~~t~g~g~d~v~d~~~~~  157 (158)
                      .....++|+++..+++++..+-+-++.+...+.-    .+  .+++.    .+.+..+.++|+|+|+|+++++
T Consensus        35 gVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lG----ad--~vi~~~~~~~~~~~~~~~~gvd~vid~vgg~  101 (167)
T d1tt7a2          35 GVGGIAVSMLNKRGYDVVASTGNREAADYLKQLG----AS--EVISREDVYDGTLKALSKQQWQGAVDPVGGK  101 (167)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHT----CS--EEEEHHHHCSSCCCSSCCCCEEEEEESCCTH
T ss_pred             hHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhc----cc--ceEeccchhchhhhcccCCCceEEEecCcHH
Confidence            4557899999999999877666666655543322    21  22332    2233378889999999999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=8.3e-05  Score=46.78  Aligned_cols=61  Identities=5%  Similarity=-0.070  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-cCCccCcCccccCCCC
Q 040822           90 ETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      ....++++++..+++++..+.+    ++..+.+++....  .+++.     .+.++ .|+++|+|+|+|++++
T Consensus        41 vG~~aiq~a~~~G~~vi~~~~~----~~~~~~~~~~Ga~--~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~  107 (174)
T d1yb5a2          41 VGLAACQIARAYGLKILGTAGT----EEGQKIVLQNGAH--EVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  107 (174)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESS----HHHHHHHHHTTCS--EEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             ccccccccccccCccccccccc----ccccccccccCcc--cccccccccHHHHhhhhhccCCceEEeecccH
Confidence            3578889999999886544433    2334444444432  23443     34456 7999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.76  E-value=0.00054  Score=43.01  Aligned_cols=62  Identities=10%  Similarity=-0.091  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cCCccCcCccccCCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      ...++++++..+...++.+-+-+   +.++.+++....  .+++     +.+.+. .|+|+|+|+|||++|++
T Consensus        40 Gl~~~q~ak~~Ga~~Vi~~d~~~---~r~~~a~~lGa~--~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~  107 (174)
T d1jqba2          40 GLMGIAGAKLRGAGRIIGVGSRP---ICVEAAKFYGAT--DILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGS  107 (174)
T ss_dssp             HHHHHHHHHTTTCSCEEEECCCH---HHHHHHHHHTCS--EEECGGGSCHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred             hhhhhhhhhcccccccccccchh---hhHHHHHhhCcc--ccccccchhHHHHHHHHhhccCcceEEEccCCH
Confidence            46688999988876444333322   333333333322  2233     334466 89999999999999864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.32  E-value=0.0031  Score=39.19  Aligned_cols=62  Identities=8%  Similarity=-0.122  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCccCcCccccCCCC
Q 040822           89 QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      ...+.++++++..+++++....+-++.+    .+++...  ..+++..+... .|.++|+|+|||+.|.
T Consensus        39 ~vG~~aiqlak~~G~~vi~~~~~~~~~~----~~~~lGa--~~~i~~~~~~~~~~~~~g~D~v~d~~G~  101 (171)
T d1iz0a2          39 ALGTAAVQVARAMGLRVLAAASRPEKLA----LPLALGA--EEAATYAEVPERAKAWGGLDLVLEVRGK  101 (171)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSGGGSH----HHHHTTC--SEEEEGGGHHHHHHHTTSEEEEEECSCT
T ss_pred             cchhhhhhhhcccccccccccccccccc----ccccccc--ceeeehhhhhhhhhccccccccccccch
Confidence            3457889999999998655443333333    2333333  23457777666 8999999999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.014  Score=36.34  Aligned_cols=52  Identities=25%  Similarity=0.348  Sum_probs=41.8

Q ss_pred             ccccCCEEEEEcCC---Cceeeeeh-hhhhccceeEEeeecCCHHHHHHHHHHHHhC
Q 040822           49 FASIAGVYVIVEVP---KEVKFKTV-NLIMEMRTIAGSIVGGGTQETKEMVEFCAEN  101 (158)
Q Consensus        49 ~~~~~g~~v~~g~~---~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~  101 (158)
                      .++++|+++++|.+   .+++++.. .++.+++++.|++.+ +..+++++++++++.
T Consensus       120 ~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~-~~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         120 LLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVS-DTSHFVKTVSITSRN  175 (182)
T ss_dssp             HEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCC-CHHHHHHHHHHHHTC
T ss_pred             HhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeC-CHHHHHHHHHHHHHC
Confidence            46889999999876   44555543 467789999999999 999999999988865

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.97  E-value=0.0022  Score=40.53  Aligned_cols=67  Identities=7%  Similarity=-0.035  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC--------cccc---cCCccCcCccccCCCCC
Q 040822           89 QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG--------QHLE---LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~--------~~~~---~t~g~g~d~v~d~~~~~  157 (158)
                      .....++|+++..+++++..+..-++.++..+.+++...+  .+++..        +.+.   .+.|+|+|+|+|++|++
T Consensus        41 ~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad--~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~  118 (189)
T d1gu7a2          41 AVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT--QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGK  118 (189)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS--EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHH
T ss_pred             hHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc--EEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcc
Confidence            3457889999999999887777777777777766655543  223321        1122   24578899999999863

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.94  E-value=0.021  Score=35.52  Aligned_cols=63  Identities=11%  Similarity=-0.018  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc--------ccc-cCCccCcCccccCCCCC
Q 040822           90 ETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ--------HLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~--------~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      ....++++++..+...++   -.+.-++.++.+++-...  .+++..+        .+. .++++|+|+|||++|++
T Consensus        40 iG~~~~~~ak~~Ga~~Vi---~~~~~~~~~~~a~~lGa~--~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~  111 (182)
T d1vj0a2          40 LGLFGVVIARSLGAENVI---VIAGSPNRLKLAEEIGAD--LTLNRRETSVEERRKAIMDITHGRGADFILEATGDS  111 (182)
T ss_dssp             HHHHHHHHHHHTTBSEEE---EEESCHHHHHHHHHTTCS--EEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred             cchhheeccccccccccc---ccccccccccccccccce--EEEeccccchHHHHHHHHHhhCCCCceEEeecCCch
Confidence            346788888888875322   222233344444444432  2344332        245 78999999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.54  E-value=0.039  Score=34.14  Aligned_cols=52  Identities=23%  Similarity=0.431  Sum_probs=39.6

Q ss_pred             ccccC-CEEEEEcCC-CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCC
Q 040822           49 FASIA-GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENG  102 (158)
Q Consensus        49 ~~~~~-g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~  102 (158)
                      .++++ |+++++|.+ ....++...++. ++++.|++.+ +   ..++++++++.++|+
T Consensus       118 ~~~~g~G~~v~vG~~~~~~~i~~~~~~~-~k~i~Gs~~G-s~~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         118 CTVLGWGSCTVVGAKVDEMTIPTVDVIL-GRSINGTFFG-GWKSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             TBCTTTCEEEECCCSSSEEEEEHHHHHT-TCEEEECSGG-GCCHHHHHHHHHHHHHTTS
T ss_pred             HhhcCCeEEEecCCCCCccccchHHHhc-cCEEEEEEee-CCChHHHHHHHHHHHHCcC
Confidence            35675 899999998 777887776664 5789998876 4   566778888888764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.76  E-value=0.0034  Score=39.61  Aligned_cols=61  Identities=11%  Similarity=-0.041  Sum_probs=36.0

Q ss_pred             HHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-cCCccCcCccccCCCCC
Q 040822           92 KEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        92 ~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      ..++|+++..++..++.+..-++..  .+.......  ..+++.     .+.++ .+ ++|+|+|||++|++
T Consensus        45 ~~aiQlak~~Ga~~vi~~~~~~e~~--~~l~~~~ga--d~vi~~~~~~~~~~~~~~~-~~GvDvv~D~vGg~  111 (187)
T d1vj1a2          45 SLAGQIGHLLGCSRVVGICGTQEKC--LFLTSELGF--DAAVNYKTGNVAEQLREAC-PGGVDVYFDNVGGD  111 (187)
T ss_dssp             GGHHHHHHHTTCSEEEEEESSHHHH--HHHHHHSCC--SEEEETTSSCHHHHHHHHC-TTCEEEEEESSCHH
T ss_pred             HHHHHHHHHcCCcceecccchHHHH--hhhhhcccc--eEEeeccchhHHHHHHHHh-ccCceEEEecCCch
Confidence            6789999999887655443333222  222222333  233444     33355 56 48999999999863

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.47  E-value=0.054  Score=33.41  Aligned_cols=51  Identities=22%  Similarity=0.427  Sum_probs=36.5

Q ss_pred             ccc-CCEEEEEcCC-Cc--eeeeehhhhhccceeEEeeecCC--HHHHHHHHHHHHhCC
Q 040822           50 ASI-AGVYVIVEVP-KE--VKFKTVNLIMEMRTIAGSIVGGG--TQETKEMVEFCAENG  102 (158)
Q Consensus        50 ~~~-~g~~v~~g~~-~~--~~~~~~~~~~~~~~i~g~~~~~~--~~~~~~~~~l~~~~~  102 (158)
                      ++. +|+++++|.+ ..  ++++...+ .+++++.|+..+ +  .++++++++|+++++
T Consensus       118 ~~~~~G~~v~vG~~~~~~~~~~~~~~~-~~~~~i~Gs~~G-~~~~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         118 TYCGSGVTVVLGLASPNERLPLDPLLL-LTGRSLKGSVFG-GFKGEEVSRLVDDYMKKK  174 (174)
T ss_dssp             BCTTTCEEEECCCCCTTCCEEECTHHH-HTTCEEEECSGG-GCCGGGHHHHHHHHHTTS
T ss_pred             HHHhcCceEEEEEecCccccccCHHHH-hCCCEEEEEEeC-CCCHHHHHHHHHHHHcCC
Confidence            444 5899999987 33  44444444 467899999866 4  457899999998874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.04  E-value=0.071  Score=33.22  Aligned_cols=54  Identities=19%  Similarity=0.139  Sum_probs=40.5

Q ss_pred             cccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC---------HHHHHHHHHHHHhCC
Q 040822           48 NFASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG---------TQETKEMVEFCAENG  102 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~---------~~~~~~~~~l~~~~~  102 (158)
                      ..++++|+++.+|..  .+.+++...++.+++++.|.+.+ .         ...+.++++++++|+
T Consensus       125 ~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G~~~~-~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         125 RKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVT-ELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             HTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHH-HHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEEEEeh-HhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            457889999999966  56788888899999999997654 2         133567777777664

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.51  E-value=0.0044  Score=39.42  Aligned_cols=62  Identities=8%  Similarity=-0.105  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cCCccCcCccccCCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      ...++++++..+...++.+-+   .++.++.+++....  .+++     +.+.+. +|+++|+|++||++|.+
T Consensus        38 Gl~a~~~ak~~ga~~Vi~~d~---~~~rl~~a~~~Ga~--~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~  105 (195)
T d1kola2          38 GLAAAASARLLGAAVVIVGDL---NPARLAHAKAQGFE--IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE  105 (195)
T ss_dssp             HHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred             HHHHHHHHHhhcccceeeecc---cchhhHhhhhcccc--EEEeCCCcCHHHHHHHHhCCCCcEEEEECcccc
Confidence            356677777766654332322   23444445444432  2222     223455 79999999999999854

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.27  E-value=0.054  Score=30.26  Aligned_cols=26  Identities=27%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             cccEEEEEeCCCCC----------CCCCCCEEEecC
Q 040822           14 EIVGAVKEVGSNVK----------CFEVGDRVGVGP   39 (158)
Q Consensus        14 e~~G~V~~vG~~v~----------~~~vGdrV~~~~   39 (158)
                      ..-|+|+++|++..          .+++||+|+...
T Consensus        37 ~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~   72 (99)
T d1p3ha_          37 PQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSK   72 (99)
T ss_dssp             EEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEEC
T ss_pred             ceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcc
Confidence            34699999998742          378999996543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.97  E-value=0.0067  Score=37.67  Aligned_cols=60  Identities=13%  Similarity=0.057  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cCCccCcCccccCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      ...++++++..+...++..-+-+   +.++.+++-...  .+++     +.++++ +|++ |+|+|||++|+
T Consensus        41 G~~~~~~ak~~g~~~v~~~~~~~---~k~~~a~~~Ga~--~~i~~~~~~~~~~i~~~t~g-g~D~vid~~G~  106 (174)
T d1f8fa2          41 GLSALLAAKVCGASIIIAVDIVE---SRLELAKQLGAT--HVINSKTQDPVAAIKEITDG-GVNFALESTGS  106 (174)
T ss_dssp             HHHHHHHHHHHTCSEEEEEESCH---HHHHHHHHHTCS--EEEETTTSCHHHHHHHHTTS-CEEEEEECSCC
T ss_pred             HhhhhhcccccccceeeeeccHH---HHHHHHHHcCCe--EEEeCCCcCHHHHHHHHcCC-CCcEEEEcCCc
Confidence            45667777776666433222222   233333332322  2233     334455 6776 89999999886

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.084  Score=32.33  Aligned_cols=53  Identities=11%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             ccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecC-CHHHHHHHHHHHHhC
Q 040822           49 FASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGG-GTQETKEMVEFCAEN  101 (158)
Q Consensus        49 ~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~-~~~~~~~~~~l~~~~  101 (158)
                      .++++|+++.+|.+...+++...++.++.++.++..+. +..++++++++++++
T Consensus       116 ~l~~~G~iv~~G~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         116 LLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAG  169 (174)
T ss_dssp             HEEEEEEEEECCCCSCEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEecCCCCCCCHHHHHHCCCEEEEEEecCCCHHHHHHHHHHHHHH
Confidence            36788999999877667888888889999999986541 456677777776653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.94  E-value=0.19  Score=30.85  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=33.0

Q ss_pred             cccCCEEEEEcCC--------CceeeeehhhhhccceeEEeeecCCH------HHHHHHHHHHHhC
Q 040822           50 ASIAGVYVIVEVP--------KEVKFKTVNLIMEMRTIAGSIVGGGT------QETKEMVEFCAEN  101 (158)
Q Consensus        50 ~~~~g~~v~~g~~--------~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~l~~~~  101 (158)
                      ++++|+++.+|..        .+..++...++.+++++.++... ..      ..++++.+++++|
T Consensus       118 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~-~~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         118 MKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY-RWQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             EEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGG-GCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEe-ccChHHHHHHHHHHHHHHhCc
Confidence            5678888888742        23344566788889999998765 31      2245666666554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.89  E-value=0.29  Score=29.69  Aligned_cols=51  Identities=24%  Similarity=0.232  Sum_probs=36.1

Q ss_pred             ccC-CEEEEEcCC-CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCC
Q 040822           51 SIA-GVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENG  102 (158)
Q Consensus        51 ~~~-g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~  102 (158)
                      +.+ +.+++.+.+ .....+...++.+++++.|+..+ +   ..+++++++|+++++
T Consensus       120 ~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G-~~~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         120 LKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFG-GFKGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGG-GCCHHHHHHHHHHHHHTTS
T ss_pred             hCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEe-CCcHHHHHHHHHHHHHcCC
Confidence            344 445555665 55556666777788999999876 4   567889999998774

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.17  E-value=0.2  Score=30.89  Aligned_cols=55  Identities=13%  Similarity=0.074  Sum_probs=40.7

Q ss_pred             ccccCCEEEEEcCC--CceeeeehhhhhccceeEEee--ecCCHHHHHHHHHHHHhCCccc
Q 040822           49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSI--VGGGTQETKEMVEFCAENGIYP  105 (158)
Q Consensus        49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~--~~~~~~~~~~~~~l~~~~~i~~  105 (158)
                      .++++|+++.++..  ...+++...++.+++++.|..  .. +..+..++++.. .+.++|
T Consensus       117 ~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~~~-~~~~~~~~~~~l-ag~lkP  175 (176)
T d1xa0a2         117 RMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYC-PMDLRLRIWERL-AGDLKP  175 (176)
T ss_dssp             TEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSC-CHHHHHHHHHHH-HTTTCC
T ss_pred             HhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCCcC-CHHHHHHHHHHH-hcccCC
Confidence            57889999999976  556788899999999999953  34 566666666655 355554

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=89.80  E-value=0.16  Score=28.04  Aligned_cols=24  Identities=33%  Similarity=0.308  Sum_probs=19.0

Q ss_pred             cccEEEEEeCCCCC---------CCCCCCEEEe
Q 040822           14 EIVGAVKEVGSNVK---------CFEVGDRVGV   37 (158)
Q Consensus        14 e~~G~V~~vG~~v~---------~~~vGdrV~~   37 (158)
                      ...|+|+++|++..         ..++||+|+.
T Consensus        35 ~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~   67 (97)
T d1aono_          35 STRGEVLAVGNGRILENGEVKPLDVKVGDIVIF   67 (97)
T ss_dssp             CCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEE
T ss_pred             ceeEEEEEEeeeEEccCCcCccccCCCCCEEEE
Confidence            45699999998652         3899999965

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.30  E-value=0.014  Score=36.32  Aligned_cols=61  Identities=11%  Similarity=-0.043  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC------cccc-cCCccCcCccccCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG------QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~------~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      ...++++++..+...++.+..-++   .++..++...+  .+++..      +.+. .|.++|+|+++|+.++
T Consensus        42 Gl~ai~~ak~~G~~~Vi~vd~~~~---kl~~Ak~~GA~--~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~  109 (176)
T d1d1ta2          42 GLSVIMGCKSAGASRIIGIDLNKD---KFEKAMAVGAT--ECISPKDSTKPISEVLSEMTGNNVGYTFEVIGH  109 (176)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGG---GHHHHHHHTCS--EEECGGGCSSCHHHHHHHHHTSCCCEEEECSCC
T ss_pred             hHHHHHHHHHcCCceEEEecCcHH---HHHHHHhcCCc--EEECccccchHHHHHHHHhccccceEEEEeCCc
Confidence            356778888888764443333222   23333333332  122322      1233 5888999999998885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.03  E-value=0.021  Score=35.14  Aligned_cols=61  Identities=18%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcc----cc-cCCccCcCccccCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQH----LE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~----~~-~t~g~g~d~v~d~~~~  156 (158)
                      ...++++++..+...++.+..   -++.++.+++....  .+++..++    .. .|+++|+|+|||++|+
T Consensus        45 G~~~~~~a~~~g~~~vv~~~~---~~~k~~~~~~~ga~--~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          45 GHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGAD--HVVDARRDPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             HHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCS--EEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             HHHHHHHHHhhcCcccccccc---hhHHHHHHhhcccc--eeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence            456777887766654332222   22345555444432  23444332    33 7899999999999986

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=0.28  Score=29.67  Aligned_cols=62  Identities=5%  Similarity=-0.147  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCccCcCccccCCCCC
Q 040822           90 ETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      ....++|+++..+.++++...+.++.+    .+++-..+  .+++..+... .+..+|+|++||++|++
T Consensus        42 vG~~a~qlak~~Ga~~i~~~~~~~~~~----~a~~lGad--~~i~~~~~~~~~~~~~~~D~vid~~g~~  104 (168)
T d1uufa2          42 LGHMGIKLAHAMGAHVVAFTTSEAKRE----AAKALGAD--EVVNSRNADEMAAHLKSFDFILNTVAAP  104 (168)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSGGGHH----HHHHHTCS--EEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred             HHHHHHHHhhcccccchhhccchhHHH----HHhccCCc--EEEECchhhHHHHhcCCCceeeeeeecc
Confidence            446788999999888754333333332    22222332  3346555544 67778999999999864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.55  E-value=0.016  Score=35.73  Aligned_cols=61  Identities=11%  Similarity=-0.047  Sum_probs=33.1

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc-------ccccCCccCcCccccCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ-------HLELKPRVGPWSCMDKIPS  156 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~-------~~~~t~g~g~d~v~d~~~~  156 (158)
                      ...++|+++..+...++.+-+-++..+..+.+   ...  .+++..+       .++.+.+.|+|+|||++|+
T Consensus        41 G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l---Ga~--~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~  108 (176)
T d2fzwa2          41 GLAVIMGCKVAGASRIIGVDINKDKFARAKEF---GAT--ECINPQDFSKPIQEVLIEMTDGGVDYSFECIGN  108 (176)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH---TCS--EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred             HHHHHHHHHHHhcCceEEEcccHHHHHHHHHh---CCc--EEEeCCchhhHHHHHHHHHcCCCCcEeeecCCC
Confidence            56678888888776544443333322222222   222  1223321       1234566799999999886

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.67  E-value=0.016  Score=35.92  Aligned_cols=62  Identities=11%  Similarity=-0.062  Sum_probs=35.2

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC------cccc-cCCccCcCccccCCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG------QHLE-LKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~------~~~~-~t~g~g~d~v~d~~~~~  157 (158)
                      ...++++++..+...++..-+-++   +++..++....  .+++..      +.+. .+.+.|+|+|||++|++
T Consensus        41 Gl~a~~~ak~~Ga~~Vi~~d~~~~---r~~~a~~~Ga~--~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~  109 (174)
T d1e3ia2          41 GLSAIIGCKIAGASRIIAIDINGE---KFPKAKALGAT--DCLNPRELDKPVQDVITELTAGGVDYSLDCAGTA  109 (174)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGG---GHHHHHHTTCS--EEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred             HHHHHHHHHHhCCceeeeeccchH---HHHHHHHhCCC--cccCCccchhhhhhhHhhhhcCCCcEEEEecccc
Confidence            467788888888765443333332   23333333332  223321      1123 57788999999999863

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.95  E-value=0.031  Score=34.25  Aligned_cols=20  Identities=15%  Similarity=0.139  Sum_probs=16.0

Q ss_pred             cccc-cCCccCcCccccCCCC
Q 040822          137 QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       137 ~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      +++. .|.++++|+|+|+.++
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~  107 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNS  107 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCC
T ss_pred             HHHHHHhhcccchhhhccccc
Confidence            3445 7888999999999886

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.69  E-value=0.74  Score=27.81  Aligned_cols=52  Identities=31%  Similarity=0.369  Sum_probs=34.3

Q ss_pred             cccC-CEEEEEcCC--CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCC
Q 040822           50 ASIA-GVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENG  102 (158)
Q Consensus        50 ~~~~-g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~  102 (158)
                      ++.+ +.+++.+.+  .........++.+++++.|+..+ +   ..++.+++++.++|+
T Consensus       119 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G-~~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         119 CQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFG-GFKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             BCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG-GCCHHHHHHHHHHHHHTTS
T ss_pred             HhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEe-CCCHHHHHHHHHHHHHCcC
Confidence            4444 455555554  33334445566789999999877 5   567888888888764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=86.33  E-value=0.26  Score=29.73  Aligned_cols=64  Identities=14%  Similarity=0.015  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC--------cccccCCccCcCccccCCCCC
Q 040822           90 ETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG--------QHLELKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        90 ~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~--------~~~~~t~g~g~d~v~d~~~~~  157 (158)
                      ....++++++..+.++++    .+.-++.++.+++-........+..        +.+..+.|.|+|+|||++|++
T Consensus        38 vG~~~~~~ak~~Ga~vi~----v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~  109 (170)
T d1e3ja2          38 IGLVSVLAAKAYGAFVVC----TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNE  109 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEE----EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCH
T ss_pred             cchhhHhhHhhhcccccc----cchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCCh
Confidence            346678888888876432    2333344555554443322211110        112235578999999999863

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.43  E-value=0.61  Score=28.27  Aligned_cols=51  Identities=12%  Similarity=0.002  Sum_probs=37.4

Q ss_pred             cccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecC-CHHHHHHHHHHH
Q 040822           48 NFASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGG-GTQETKEMVEFC   98 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~-~~~~~~~~~~l~   98 (158)
                      ..++++|+++.++..  ...+++...++.+++++.|..... +..+.+++++.+
T Consensus       108 ~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~l  161 (167)
T d1tt7a2         108 SKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERM  161 (167)
T ss_dssp             TTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHT
T ss_pred             HHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHHHHH
Confidence            457889999999977  567888999999999999975431 344444555443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.25  E-value=0.021  Score=35.14  Aligned_cols=16  Identities=6%  Similarity=-0.089  Sum_probs=13.7

Q ss_pred             cCCccCcCccccCCCC
Q 040822          141 LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       141 ~t~g~g~d~v~d~~~~  156 (158)
                      .+.++|+|+|+|++|+
T Consensus        93 ~~~~~G~d~vid~~G~  108 (175)
T d1cdoa2          93 KMTNGGVDFSLECVGN  108 (175)
T ss_dssp             HHHTSCBSEEEECSCC
T ss_pred             hhccCCcceeeeecCC
Confidence            6778899999999886

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.89  E-value=0.026  Score=34.94  Aligned_cols=61  Identities=8%  Similarity=-0.040  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC------cccc-cCCccCcCccccCCCC
Q 040822           91 TKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG------QHLE-LKPRVGPWSCMDKIPS  156 (158)
Q Consensus        91 ~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~------~~~~-~t~g~g~d~v~d~~~~  156 (158)
                      ...++++++..+...++.+-+-+   +.++..++....  .+++..      ++.. .+.++|+|+|||++++
T Consensus        40 Gl~a~~~ak~~G~~~Vi~~d~~~---~kl~~a~~lGa~--~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~  107 (174)
T d1p0fa2          40 GFSAIVGCKAAGASRIIGVGTHK---DKFPKAIELGAT--ECLNPKDYDKPIYEVICEKTNGGVDYAVECAGR  107 (174)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSCG---GGHHHHHHTTCS--EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred             hHHHHHHHHHcCCceeeccCChH---HHHHHHHHcCCc--EEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCC
Confidence            35667777776665433332222   223333333332  222321      1233 4666799999998875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.40  E-value=0.089  Score=32.57  Aligned_cols=63  Identities=8%  Similarity=-0.125  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcc--cccCCccCcCccccCCCCC
Q 040822           89 QETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQH--LELKPRVGPWSCMDKIPSR  157 (158)
Q Consensus        89 ~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~--~~~t~g~g~d~v~d~~~~~  157 (158)
                      .....++|+++..+++++...-+.++.+.+.+ +   ..  ..+++..+.  .+.......|.++|+++++
T Consensus        43 GVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~-l---Ga--d~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~  107 (177)
T d1o89a2          43 GVGSTAVALLHKLGYQVVAVSGRESTHEYLKS-L---GA--SRVLPRDEFAESRPLEKQVWAGAIDTVGDK  107 (177)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH-H---TE--EEEEEGGGSSSCCSSCCCCEEEEEESSCHH
T ss_pred             cchHHHHHHHHHcCCCeEEEecchhHHHHHHh-h---cc--ccccccccHHHHHHHHhhcCCeeEEEcchH
Confidence            45688999999999998776666666544322 2   22  223343221  1222334458889988753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.31  E-value=1.2  Score=26.67  Aligned_cols=52  Identities=15%  Similarity=0.057  Sum_probs=33.6

Q ss_pred             cccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCC
Q 040822           50 ASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENG  102 (158)
Q Consensus        50 ~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~  102 (158)
                      ++.++..++++..   .....+....+.+++++.|+..+ +   ..++.+++++.++|+
T Consensus       119 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G-~~~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         119 CHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFG-GWKSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             BCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG-GCCHHHHHHHHHHHHHTTS
T ss_pred             hcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeee-CCcHHHHHHHHHHHHHcCC
Confidence            4556666666543   33344445555678899999876 4   456777888887764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.08  E-value=0.026  Score=34.83  Aligned_cols=16  Identities=13%  Similarity=-0.103  Sum_probs=13.5

Q ss_pred             cCCccCcCccccCCCC
Q 040822          141 LKPRVGPWSCMDKIPS  156 (158)
Q Consensus       141 ~t~g~g~d~v~d~~~~  156 (158)
                      .+.+.|+|+|||++|+
T Consensus        93 ~~~~~G~D~vid~~G~  108 (176)
T d2jhfa2          93 EMSNGGVDFSFEVIGR  108 (176)
T ss_dssp             HHTTSCBSEEEECSCC
T ss_pred             HHhcCCCCEEEecCCc
Confidence            5677899999999886

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.59  E-value=0.16  Score=31.01  Aligned_cols=38  Identities=11%  Similarity=0.160  Sum_probs=27.8

Q ss_pred             cccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeec
Q 040822           48 NFASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVG   85 (158)
Q Consensus        48 ~~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~   85 (158)
                      ..++++|+++.+|.+  ...+++...++.+++++.++..+
T Consensus       108 ~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~  147 (171)
T d1iz0a2         108 GLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  147 (171)
T ss_dssp             TTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             HHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCc
Confidence            457889999999987  45577888888999999998765

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=81.02  E-value=0.32  Score=26.75  Aligned_cols=25  Identities=28%  Similarity=0.236  Sum_probs=18.8

Q ss_pred             cccEEEEEeCCCCC---------CCCCCCEEEec
Q 040822           14 EIVGAVKEVGSNVK---------CFEVGDRVGVG   38 (158)
Q Consensus        14 e~~G~V~~vG~~v~---------~~~vGdrV~~~   38 (158)
                      .-.|+|+++|++..         ..++||+|+..
T Consensus        36 ~~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~   69 (96)
T d1we3o_          36 PQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFA   69 (96)
T ss_dssp             CSEEEESCCCCCEECTTSCEECCSCCTTCEEEEC
T ss_pred             ceEEEEeeecceEecCCCCEEEeeEEeCCEEEEc
Confidence            34699999998642         38999999653