Citrus Sinensis ID: 040949
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SBA7 | 507 | Sugar transport protein 8 | yes | no | 0.989 | 0.956 | 0.691 | 0.0 | |
| Q9SFG0 | 507 | Sugar transport protein 6 | no | no | 0.985 | 0.952 | 0.673 | 0.0 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.989 | 0.922 | 0.606 | 1e-171 | |
| Q9LNV3 | 498 | Sugar transport protein 2 | no | no | 0.991 | 0.975 | 0.559 | 1e-156 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.977 | 0.926 | 0.554 | 1e-154 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.991 | 0.947 | 0.522 | 1e-151 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.977 | 0.931 | 0.537 | 1e-150 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.987 | 0.941 | 0.535 | 1e-146 | |
| Q8GW61 | 504 | Sugar transport protein 1 | no | no | 0.981 | 0.954 | 0.527 | 1e-144 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.985 | 0.923 | 0.520 | 1e-142 |
| >sp|Q9SBA7|STP8_ARATH Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/486 (69%), Positives = 393/486 (80%), Gaps = 1/486 (0%)
Query: 3 ESEDFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHARE 62
S+ F +K+TVYV +C I+AA GGL+FGYDIGISGGVTAMDDFL +FFP VY+RK HA E
Sbjct: 10 NSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHE 69
Query: 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL 122
+NYCKYDNQ LQLFTSSLYLAAL ASF AS C+K GR+PT+ +AS FFL G G+++GA+
Sbjct: 70 NNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAV 129
Query: 123 NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYG 182
NI+MLIIGRILLG GVGFGN+AVPLFLSEIAP + RG +NI+FQL VTIGI +AN+VNY
Sbjct: 130 NIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYF 189
Query: 183 TAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
T+ +HP+GWR++L AG+PA+ L GS++I ETPTSLIER G + LKKIRGVEDV+
Sbjct: 190 TSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDVD 249
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
EYE I A DIARQVK P+ +LMK +S PP +IG+LLQ FQQFTGINAIMFYAPVLFQT
Sbjct: 250 EEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPVLFQT 309
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
VGF NDA+LLS+V+TGT+NVLST V I+ VDK GRR LLLQ+ V M I Q IG +L
Sbjct: 310 VGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILAKD 369
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
L T TL QA VV VC++VM FAWSWGPLGWLIPSETFPLETRT GFA AVS NM
Sbjct: 370 LDVT-GTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNM 428
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FFTF+IAQAFLSM+C M++ IFFFF+GWI+VMGLFALF +PETKGV ID M + VWK H
Sbjct: 429 FFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLHW 488
Query: 483 VWKRFM 488
WKRFM
Sbjct: 489 YWKRFM 494
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFG0|STP6_ARATH Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/487 (67%), Positives = 393/487 (80%), Gaps = 4/487 (0%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYC 66
F++K+TVYV +C ++AA GGL+FGYDIGISGGV+AMDDFL +FFP V++RK H E+NYC
Sbjct: 13 FEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYC 72
Query: 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWM 126
KYDNQ LQLFTSSLYLAAL ASFVAS C+K GR+PT+ AS FFL G G+++GA+N+ M
Sbjct: 73 KYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVM 132
Query: 127 LIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL 186
LIIGR+ LG GVGFGN+AVPLFLSEIAP Q RG +NI+FQL VTIGI +AN+VNY TA +
Sbjct: 133 LIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYFTATV 192
Query: 187 HPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYE 246
HP+GWR++L AG+PA+ L GS++I ETPTSLIER G +AL+KIRGV+D+N EYE
Sbjct: 193 HPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVDDINDEYE 252
Query: 247 QIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFK 306
I A DIA QVK P+++L+K +S PP IIG+LLQ+FQQFTGINAIMFYAPVLFQTVGF
Sbjct: 253 SIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFYAPVLFQTVGFG 312
Query: 307 NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366
+DA+LLS+VITG++NVL+T V IY VD+ GRR LLLQ+ V M I Q IG +L L T
Sbjct: 313 SDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIILAKDLGVT 372
Query: 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTF 426
TL QA VV VC++VM FAWSWGPLGWLIPSETFPLETR+AGFA AVS NMFFTF
Sbjct: 373 -GTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSCNMFFTF 431
Query: 427 LIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWKR 486
+IAQAFLSM+C MR+ IFFFF+GWI+VMGLFA F +PETKG+ ID M E VWK H WKR
Sbjct: 432 VIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKPHWFWKR 491
Query: 487 FM---DD 490
+M DD
Sbjct: 492 YMLPEDD 498
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, mannose, fructose and galactose, and, to a lower extent, xylose and ribulose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/488 (60%), Positives = 373/488 (76%), Gaps = 3/488 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHA--RED 63
+F++KIT V++ I+AA GGLMFGYD+G+SGGVT+M DFL KFFP VY++ + ++
Sbjct: 14 EFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDS 73
Query: 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN 123
NYCKYDNQ LQLFTSSLYLA L A+F AS GR+ T+L+A FF+ G +++GA +
Sbjct: 74 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQD 133
Query: 124 IWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183
+ MLI GRILLG GVGF N+AVPLFLSEIAP + RG +NILFQL VTIGI ANLVNYGT
Sbjct: 134 LAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 193
Query: 184 AKLHPH-GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
AK+ GWR+SL LAG+PA+ L +G++++TETP SL+ERG G L++IRG ++V
Sbjct: 194 AKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTDNVE 253
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
E+ + AS +A++VKHPF+ L++R + P L+I V LQ+FQQ TGINAIMFYAPVLF T
Sbjct: 254 PEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFST 313
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
+GF +DASL S+V+TG VNVLSTLVSIY+VDKVGRR LLL+A VQMF SQ I +L V
Sbjct: 314 LGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVK 373
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
+ TS L+ A VV ++C +V AFAWSWGPLGWLIPSETFPLETR+AG + V N+
Sbjct: 374 VTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FTF+IAQAFLSM+CH + IF FF+ W+L+M +F +FLLPETK +PI+ M ERVWKKH
Sbjct: 434 LFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHW 493
Query: 483 VWKRFMDD 490
W RFMDD
Sbjct: 494 FWARFMDD 501
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNV3|STP2_ARATH Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 273/488 (55%), Positives = 359/488 (73%), Gaps = 2/488 (0%)
Query: 4 SEDFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHARED 63
++ F +K+T V +C ++AA GGLMFGYDIGISGGVT+MD FL+ FFP VY++K E+
Sbjct: 12 TKAFPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHRVHEN 71
Query: 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN 123
NYCK+D+Q+LQLFTSSLYLA +FASF++S V FGRKPTI++AS FFL GA ++ A
Sbjct: 72 NYCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAILNLSAQE 131
Query: 124 IWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183
+ MLI GRILLG G+GFGN+ VPLF+SEIAP ++RG +N++FQ +TIGI A+ VNY T
Sbjct: 132 LGMLIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILAASYVNYLT 191
Query: 184 AKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNA 243
+ L +GWR SL A VPA+ L IGS I ETP SLIERG + G + L+KIRG+ED+
Sbjct: 192 STLK-NGWRYSLGGAAVPALILLIGSFFIHETPASLIERGKDEKGKQVLRKIRGIEDIEL 250
Query: 244 EYEQIKLASDIARQVKHPFKELMKRS-SMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
E+ +IK A+++A +VK PFKEL +S + PPL+ G LLQ FQQFTGIN +MFYAPVLFQT
Sbjct: 251 EFNEIKYATEVATKVKSPFKELFTKSENRPPLVCGTLLQFFQQFTGINVVMFYAPVLFQT 310
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
+G ++ASL+S+V+T VN ++T++S+ VD GRR LL++ +QM +Q TIGG+LL H
Sbjct: 311 MGSGDNASLISTVVTNGVNAIATVISLLVVDFAGRRCLLMEGALQMTATQMTIGGILLAH 370
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
LK V+ L+C++V FAWSWGPLGWL+PSE +PLE R AG+ AV+ NM
Sbjct: 371 LKLVGPITGHAVPLIVLILICVYVSGFAWSWGPLGWLVPSEIYPLEVRNAGYFCAVAMNM 430
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
TF+I Q FLS +C R+ +FFFF ++MGLF +F LPETKGVPI+ M E+ WK HP
Sbjct: 431 VCTFIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEMAEKRWKTHP 490
Query: 483 VWKRFMDD 490
WK++ D
Sbjct: 491 RWKKYFKD 498
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, xylose, mannose, fructose and galactose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/483 (55%), Positives = 362/483 (74%), Gaps = 4/483 (0%)
Query: 11 ITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAR-EDNYCKYD 69
+TV+V++ I+AA GGL+FGYD+GISGGVT+M++FL KFFPEV K+ AR E YCK+D
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 70 NQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLII 129
NQ+LQLFTSSLYLAAL +SFVAS V K+GRK ++ V FL G+ ++ A N+ MLI+
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 130 GRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPH 189
GR+LLG+GVGF N++ P++LSE+AP + RGA+NI FQ+ +TIGI +ANL+NYGT+++ +
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200
Query: 190 GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIK 249
GWRVSL LA VPA+ + IGS V+ +TP S++ERG + L+KIRG ++V+ E++ +
Sbjct: 201 GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEFQDLC 260
Query: 250 LASDIARQVKHPFKELMKRSSM-PPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKND 308
A + A++V +P+K + +++ P L+ + FQQ TGIN IMFYAPVLF+T+GF +D
Sbjct: 261 DACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADD 320
Query: 309 ASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT-S 367
ASL+S+VITG VNV+STLVSIYAVD+ GRR L L+ +QM +SQ +G ++ + T S
Sbjct: 321 ASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGS 380
Query: 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFL 427
TLT A +++ +CL+V FAWSWGPLGWL+PSE PLE R AG A VS NMFFTFL
Sbjct: 381 GTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFL 440
Query: 428 IAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWKRF 487
I Q FL+M+CHM+ +F+FF G + VM +F FLLPETKGVPI+ M RVWK+HP WKR+
Sbjct: 441 IGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEM-GRVWKQHPFWKRY 499
Query: 488 MDD 490
M D
Sbjct: 500 MPD 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/488 (52%), Positives = 349/488 (71%), Gaps = 2/488 (0%)
Query: 3 ESEDFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHARE 62
+E ++ K+T YV++ ++AA GG +FGYDIGISGGVT+MD+FL +FF VY++K A E
Sbjct: 15 RAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHE 74
Query: 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL 122
NYCKYDNQ L FTSSLYLA L ++ VAS + +GR+ +I+ FL G+G+++GA+
Sbjct: 75 SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAV 134
Query: 123 NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYG 182
N+ ML+ GRI+LG+G+GFGN+AVPL+LSE+AP RG +N++FQL TIGIF AN+VNYG
Sbjct: 135 NLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYG 194
Query: 183 TAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
T +L P GWR+SL LA PA+ + +G + ETP SL+ERG G + L K+RG E+VN
Sbjct: 195 TQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENVN 254
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
AE + + AS++A +KHPF+ ++++ P L++ + + +FQ TGIN+I+FYAPVLFQT
Sbjct: 255 AELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQT 314
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
+GF +ASL SS +TG V VLST +SI VD++GRR LL+ +QM I Q + +L V
Sbjct: 315 MGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVK 374
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
+ L+ + VV +CLFV+AF WSWGPLGW IPSE FPLETR+AG + V+ N+
Sbjct: 375 F-GDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNL 433
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FTF+IAQAFL ++C + IF FFAGW+ VM +F FLLPETKGVPI+ M +W KH
Sbjct: 434 LFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMT-LLWSKHW 492
Query: 483 VWKRFMDD 490
WK+ + D
Sbjct: 493 FWKKVLPD 500
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 259/482 (53%), Positives = 356/482 (73%), Gaps = 3/482 (0%)
Query: 11 ITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDN-YCKYD 69
+T +V++ I+AA GGL+FGYD+GISGGVT+M++FL KFFP+V + A+ D YCK+D
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 70 NQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLII 129
NQ+LQLFTSSLYLAAL ASF+AS + K GRK ++ + FL GA ++ A+N+ MLII
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 130 GRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPH 189
GR+LLG+GVGF N++ P++LSE+AP + RGA+NI FQ+ +TIGI +ANL+NYGT+K+ H
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMAQH 200
Query: 190 GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIK 249
GWRVSL LA VPA+ + IGS ++ +TP S++ERG + LKKIRG ++V+ E++ +
Sbjct: 201 GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEFQDLI 260
Query: 250 LASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDA 309
A + A++V++P+K +M+ P LI + FQQ TGIN IMFYAPVLF+T+GF +DA
Sbjct: 261 DAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDA 320
Query: 310 SLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT-SN 368
+L+S+VITG VN+LST VSIYAVD+ GRR L L+ +QMFI Q +G + + +
Sbjct: 321 ALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTG 380
Query: 369 TLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLI 428
TLT A +++ +C++V FAWSWGPLGWL+PSE PLE R AG A VS NMFFTFLI
Sbjct: 381 TLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLI 440
Query: 429 AQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWKRFM 488
Q FL+M+CHM+ +F+FFA + +M +F FLLPETKGVPI+ M RVWK+H WK+++
Sbjct: 441 GQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEM-GRVWKQHWFWKKYI 499
Query: 489 DD 490
+
Sbjct: 500 PE 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1332), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/489 (53%), Positives = 354/489 (72%), Gaps = 5/489 (1%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKR--KLHARED 63
D++ ++T +V++ I+AA GGL+FGYDIGISGGV +M+DFL KFFP+V ++ RE
Sbjct: 15 DYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRET 74
Query: 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN 123
YCKYDN++L LFTSSLYLAALFASF+AS + FGRK ++++ S FL+GA ++ A+N
Sbjct: 75 EYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAIN 134
Query: 124 IWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183
+ MLIIGR+ LG+GVGF N++VPL+LSE+AP + RGA+NI FQL +TIGI AN+VNY T
Sbjct: 135 LEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVT 194
Query: 184 AKLHPH-GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
KL GWR+SL LAGVPA+ + +G + +TP S++ERGN+ + L+KIRG +V
Sbjct: 195 PKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRGTMEVE 254
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
E+ ++ A + A++VKHP+ +M+ P L + FQQ TGIN IMFYAPVLF+T
Sbjct: 255 HEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKT 314
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
+GF NDASL+S+VITG VNVLST+VSIY+VDK GRR L LQ QM ++Q +G M+
Sbjct: 315 IGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWK 374
Query: 363 LK-ATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSN 421
L+ A ++ L+CL+V FAWSWGPLGWL+PSE PLE R+AG + VS N
Sbjct: 375 FGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVN 434
Query: 422 MFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKH 481
MFFTF I Q FL+M+CHM+ +F+FFAG +L+M +F FLLPETKGVPI+ M +VWK+H
Sbjct: 435 MFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEM-GKVWKEH 493
Query: 482 PVWKRFMDD 490
W ++ ++
Sbjct: 494 RYWGKYSNN 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/487 (52%), Positives = 346/487 (71%), Gaps = 6/487 (1%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRK-LHAREDNY 65
++ +IT Y + I+ + GG +FGYD+G+SGGVT+MDDFL +FFP +YKRK +H E +Y
Sbjct: 18 YEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETDY 77
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVAS-SFFLAGAGISSGALNI 124
CKYDNQIL LFTSSLY A L ++F AS V +GR+ +ILV S SFFL G I++ A NI
Sbjct: 78 CKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGV-INAAAKNI 136
Query: 125 WMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTA 184
MLI+GRI LGIG+GFGN+AVPL+LSE+AP + RG VN LFQL IGI +ANL+NY T
Sbjct: 137 LMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTE 196
Query: 185 KLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAE 244
++HP GWR+SL LA VPAI +F+G +V+ ETP SL+E+G L K+RG ++ AE
Sbjct: 197 QIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEAE 256
Query: 245 YEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVL-LQVFQQFTGINAIMFYAPVLFQTV 303
++ + ASD AR VK+PF+ L+ R + P L+IG + L FQQ TG+N+I+FYAPV+FQ++
Sbjct: 257 FQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSL 316
Query: 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHL 363
GF ASL+SS IT V++ ++S+Y+ DK GRR LLL+A V+MF +G L +
Sbjct: 317 GFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKF 376
Query: 364 KATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMF 423
L + +V L+CLFV+A+ SWGP+GWL+PSE FPLETR+AG + V N+F
Sbjct: 377 -GEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLF 435
Query: 424 FTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPV 483
FT LIAQ FL +CH++ IF FAG IL MG F FLLPETK VPI+ V +W++H +
Sbjct: 436 FTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIE-EVYLLWRQHWL 494
Query: 484 WKRFMDD 490
WK++++D
Sbjct: 495 WKKYVED 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1298), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/488 (52%), Positives = 346/488 (70%), Gaps = 5/488 (1%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDN-Y 65
+ +T+YV V ++AA GGL+FGYDIGISGGVT+MD FL KFFP VY++K N Y
Sbjct: 17 YPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQY 76
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
C+YD+Q L +FTSSLYLAAL AS VAS + KFGRK ++L F AGA I+ A +W
Sbjct: 77 CQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVW 136
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
MLI+GRILLG G+GF N++VPL+LSE+AP ++RGA+NI FQL +TIGI +AN++NY AK
Sbjct: 137 MLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAK 196
Query: 186 LHPH-GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAE 244
+ GWR+SL A VPA+ + +GS+V+ +TP S+IERG LK++RGVEDV+ E
Sbjct: 197 IKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEARAHLKRVRGVEDVDEE 256
Query: 245 YEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVG 304
+ + AS+ +++V+HP++ L++R P L + + + FQQ TGIN IMFYAPVLF T+G
Sbjct: 257 FTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIG 316
Query: 305 FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH-- 362
F +DA+L+S+VITG VNV +T+VSIY VDK GRR L L+ VQM I Q+ + +
Sbjct: 317 FGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFG 376
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
+ L A VV +C++V FAWSWGPLGWL+PSE FPLE R+A + VS NM
Sbjct: 377 VDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNM 436
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FFTF++AQ FL M+CH++ +F FF+ ++L+M +F + LPETKG+PI+ M +VWK+H
Sbjct: 437 FFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETKGIPIEEM-GQVWKQHW 495
Query: 483 VWKRFMDD 490
W R++ D
Sbjct: 496 YWSRYVVD 503
|
Ricinus communis (taxid: 3988) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| 298204798 | 506 | unnamed protein product [Vitis vinifera] | 0.987 | 0.956 | 0.802 | 0.0 | |
| 359495076 | 506 | PREDICTED: sugar transport protein 8-lik | 0.987 | 0.956 | 0.804 | 0.0 | |
| 225449893 | 506 | PREDICTED: sugar transport protein 8 [Vi | 0.987 | 0.956 | 0.802 | 0.0 | |
| 296081298 | 502 | unnamed protein product [Vitis vinifera] | 0.987 | 0.964 | 0.802 | 0.0 | |
| 147846602 | 506 | hypothetical protein VITISV_029241 [Viti | 0.987 | 0.956 | 0.802 | 0.0 | |
| 310877818 | 506 | putative hexose transporter [Vitis vinif | 0.987 | 0.956 | 0.802 | 0.0 | |
| 147822727 | 506 | hypothetical protein VITISV_025411 [Viti | 0.993 | 0.962 | 0.776 | 0.0 | |
| 225449895 | 506 | PREDICTED: sugar transport protein 8 [Vi | 0.987 | 0.956 | 0.8 | 0.0 | |
| 225432608 | 513 | PREDICTED: sugar transport protein 8-lik | 0.993 | 0.949 | 0.776 | 0.0 | |
| 310877820 | 506 | putative hexose transporter [Vitis vinif | 0.987 | 0.956 | 0.8 | 0.0 |
| >gi|298204798|emb|CBI25296.3| unnamed protein product [Vitis vinifera] gi|310877810|gb|ADP37136.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/485 (80%), Positives = 429/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVVVCW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVVCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGRSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
EQIK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EQIKMACEAAREVKDPFKRLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+ MGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVAMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495076|ref|XP_002268611.2| PREDICTED: sugar transport protein 8-like [Vitis vinifera] gi|310877816|gb|ADP37139.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/485 (80%), Positives = 430/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVVVCW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVVCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGLSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
EQIK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EQIKMACEAAREVKDPFKTLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+VMGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVVMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449893|ref|XP_002268130.1| PREDICTED: sugar transport protein 8 [Vitis vinifera] gi|310877812|gb|ADP37137.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/485 (80%), Positives = 429/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVVVCW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVVCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGLSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
EQIK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EQIKMACEAAREVKDPFKRLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+ MGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVAMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081298|emb|CBI17742.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/485 (80%), Positives = 429/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVVVCW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVVCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGLSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
EQIK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EQIKMACEAAREVKDPFKRLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+ MGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVAMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147846602|emb|CAN79503.1| hypothetical protein VITISV_029241 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/485 (80%), Positives = 429/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVVVCW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVVCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGLSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
EQIK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EQIKMACEAAREVKDPFKRLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+ MGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVAMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877818|gb|ADP37140.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/485 (80%), Positives = 429/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVVVCW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVVCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGLSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
EQIK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EQIKMACEAAREVKDPFKTLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+ MGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVAMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147822727|emb|CAN61764.1| hypothetical protein VITISV_025411 [Vitis vinifera] gi|310877806|gb|ADP37134.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/488 (77%), Positives = 432/488 (88%), Gaps = 1/488 (0%)
Query: 3 ESEDFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHARE 62
S F+S+IT YVV+CWILAAFGGLMFGYDIGISGGVT MD FLIKFFP VYKRKL A+E
Sbjct: 7 NSMKFESRITFYVVLCWILAAFGGLMFGYDIGISGGVTGMDGFLIKFFPIVYKRKLRAKE 66
Query: 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL 122
DNYCKYD+Q LQLFTSSLYLAAL +SF ASKVCTKFGRKPTILVAS FFL G+G+S+GA
Sbjct: 67 DNYCKYDDQYLQLFTSSLYLAALISSFPASKVCTKFGRKPTILVASVFFLLGSGLSAGAH 126
Query: 123 NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYG 182
+WMLI+GRI LG GVGFGNEAVPLFLSEIAPV++RGAVNILFQLF+TIGI +ANLVNYG
Sbjct: 127 QMWMLILGRISLGCGVGFGNEAVPLFLSEIAPVEYRGAVNILFQLFITIGILIANLVNYG 186
Query: 183 TAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
T+K+HP GWR+SL LA +PA LFIGS++I ETPTSL+ER +E G K LKKIRGV++V+
Sbjct: 187 TSKVHPWGWRLSLGLAAIPATGLFIGSLIIPETPTSLVERNHEEKGRKTLKKIRGVDNVD 246
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
E+EQIK+A +IAR+VKHP++ LMK SSMPPLIIG+++QVFQQFTGINAIMFYAP+LFQT
Sbjct: 247 PEFEQIKVACEIARRVKHPYRSLMKLSSMPPLIIGIMMQVFQQFTGINAIMFYAPILFQT 306
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
VGFKNDASLLS++ITG VNV T+VSIYAVDKVGRR LLLQACVQMF+SQ+ IGG+LL
Sbjct: 307 VGFKNDASLLSAIITGLVNVFCTVVSIYAVDKVGRRLLLLQACVQMFVSQTAIGGILLAK 366
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
L AT N+L QA VV LVC++V +FAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM
Sbjct: 367 LNAT-NSLPKGQAWVVVVLVCVYVSSFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 425
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FTF+IAQ+FLSMMCHMRA IF FFAGWI++MG+F LFLLPETKGVPID M ERVWKKHP
Sbjct: 426 LFTFVIAQSFLSMMCHMRAGIFLFFAGWIVIMGIFVLFLLPETKGVPIDEMKERVWKKHP 485
Query: 483 VWKRFMDD 490
+WK+FM D
Sbjct: 486 IWKKFMSD 493
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449895|ref|XP_002268177.1| PREDICTED: sugar transport protein 8 [Vitis vinifera] gi|310877814|gb|ADP37138.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/485 (80%), Positives = 429/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVV+CW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVLCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGLSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
EQIK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EQIKMACEAAREVKDPFKRLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+ MGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVAMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432608|ref|XP_002277946.1| PREDICTED: sugar transport protein 8-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/488 (77%), Positives = 432/488 (88%), Gaps = 1/488 (0%)
Query: 3 ESEDFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHARE 62
S F+S+IT YVV+CWILAAFGGLMFGYDIGISGGVT MD FLIKFFP VYKRKL A+E
Sbjct: 14 NSMKFESRITFYVVLCWILAAFGGLMFGYDIGISGGVTGMDGFLIKFFPIVYKRKLRAKE 73
Query: 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL 122
DNYCKYD+Q LQLFTSSLYLAAL +SF ASKVCTKFGRKPTILVAS FFL G+G+S+GA
Sbjct: 74 DNYCKYDDQYLQLFTSSLYLAALISSFPASKVCTKFGRKPTILVASVFFLLGSGLSAGAH 133
Query: 123 NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYG 182
+WMLI+GRI LG GVGFGNEAVPLFLSEIAPV++RGAVNILFQLF+TIGI +ANLVNYG
Sbjct: 134 QMWMLILGRISLGCGVGFGNEAVPLFLSEIAPVEYRGAVNILFQLFITIGILIANLVNYG 193
Query: 183 TAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
T+K+HP GWR+SL LA +PA LFIGS++I ETPTSL+ER +E G K LKKIRGV++V+
Sbjct: 194 TSKVHPWGWRLSLGLAAIPATGLFIGSLIIPETPTSLVERNHEEKGRKTLKKIRGVDNVD 253
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
E+EQIK+A +IAR+VKHP++ LMK SSMPPLIIG+++QVFQQFTGINAIMFYAP+LFQT
Sbjct: 254 PEFEQIKVACEIARRVKHPYRSLMKLSSMPPLIIGIMMQVFQQFTGINAIMFYAPILFQT 313
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
VGFKNDASLLS++ITG VNV T+VSIYAVDKVGRR LLLQACVQMF+SQ+ IGG+LL
Sbjct: 314 VGFKNDASLLSAIITGLVNVFCTVVSIYAVDKVGRRLLLLQACVQMFVSQTAIGGILLAK 373
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
L AT N+L QA VV LVC++V +FAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM
Sbjct: 374 LNAT-NSLPKGQAWVVVVLVCVYVSSFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 432
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FTF+IAQ+FLSMMCHMRA IF FFAGWI++MG+F LFLLPETKGVPID M ERVWKKHP
Sbjct: 433 LFTFVIAQSFLSMMCHMRAGIFLFFAGWIVIMGIFVLFLLPETKGVPIDEMKERVWKKHP 492
Query: 483 VWKRFMDD 490
+WK+FM D
Sbjct: 493 IWKKFMSD 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877820|gb|ADP37141.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/485 (80%), Positives = 428/485 (88%), Gaps = 1/485 (0%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNY 65
F+SKITVYVVVCW+LAA GGLMFGYDIGISGGVTAMDDFLIKFFP VY+RKL A+EDNY
Sbjct: 9 SFESKITVYVVVCWVLAACGGLMFGYDIGISGGVTAMDDFLIKFFPAVYQRKLRAKEDNY 68
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW 125
CKYDNQ LQLFTSSLYLAAL +SF ASK+C+K GRKPTI VAS+FFL G+ +S+ A IW
Sbjct: 69 CKYDNQYLQLFTSSLYLAALVSSFAASKMCSKLGRKPTIFVASAFFLCGSLLSAAAQRIW 128
Query: 126 MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
M+I+ R+LLG+GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF+TIGI ANLVNYG +K
Sbjct: 129 MIILARVLLGVGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFITIGILFANLVNYGASK 188
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+HP GWR+SL LA +PA FLF+GS+VI ETP SL+ER E G LKKIRGVEDV+AE+
Sbjct: 189 IHPWGWRLSLGLASLPAAFLFVGSVVIIETPASLVERNQESQGLSTLKKIRGVEDVDAEF 248
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
E IK+A + AR+VK PFK LMKRSSMPPLIIGV++QVFQQFTGINAIMFYAPVLFQTVGF
Sbjct: 249 EHIKMACEAAREVKDPFKTLMKRSSMPPLIIGVMMQVFQQFTGINAIMFYAPVLFQTVGF 308
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
KNDASLLSSVITG VNV STLVSIY VD+VGRRKLLLQACVQMFISQ+ IG +LLVHLK
Sbjct: 309 KNDASLLSSVITGLVNVFSTLVSIYGVDRVGRRKLLLQACVQMFISQTAIGAILLVHLKG 368
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
SN+L AG VV LVCLFVM+FAWSWGPLGWLIPSETFPLE RT+GFA AVSSNM FT
Sbjct: 369 -SNSLDEGLAGLVVVLVCLFVMSFAWSWGPLGWLIPSETFPLEIRTSGFACAVSSNMLFT 427
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+IAQAFLSMMCHMRA+IFFFFA WI+ MGLF LFLLPETK VPID MVERVWK+HPVWK
Sbjct: 428 FIIAQAFLSMMCHMRAFIFFFFAAWIVAMGLFVLFLLPETKNVPIDAMVERVWKQHPVWK 487
Query: 486 RFMDD 490
RFMDD
Sbjct: 488 RFMDD 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.987 | 0.954 | 0.659 | 3.2e-168 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.981 | 0.948 | 0.649 | 1.4e-165 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.989 | 0.922 | 0.579 | 3.4e-148 | |
| TAIR|locus:2025102 | 498 | STP2 "sugar transporter 2" [Ar | 0.985 | 0.969 | 0.536 | 1.7e-139 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.985 | 0.934 | 0.523 | 8.8e-134 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.985 | 0.939 | 0.512 | 6.4e-131 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.985 | 0.939 | 0.506 | 8.1e-131 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.989 | 0.945 | 0.501 | 1.7e-130 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.981 | 0.954 | 0.498 | 8e-124 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.985 | 0.925 | 0.481 | 3.2e-120 |
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1636 (581.0 bits), Expect = 3.2e-168, P = 3.2e-168
Identities = 320/485 (65%), Positives = 376/485 (77%)
Query: 4 SEDFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHARED 63
S+ F +K+TVYV +C I+AA GGL+FGYDIGISGGVTAMDDFL +FFP VY+RK HA E+
Sbjct: 11 SKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHEN 70
Query: 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN 123
NYCKYDNQ LQLFTSSLYLAAL ASF AS C+K GR+PT+ +AS FFL G G+++GA+N
Sbjct: 71 NYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVN 130
Query: 124 XXXXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183
N+AVPLFLSEIAP + RG +NI+FQL VTIGI +AN+VNY T
Sbjct: 131 IYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYFT 190
Query: 184 AKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNA 243
+ +HP+GWR++L AG+PA+ L GS++I ETPTSLIER G + LKKIRGVEDV+
Sbjct: 191 SSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDVDE 250
Query: 244 EYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV 303
EYE I A DIARQVK P+ +LMK +S PP +IG+LLQ FQQFTGINAIMFYAPVLFQTV
Sbjct: 251 EYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPVLFQTV 310
Query: 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHL 363
GF NDA+LLS+V+TGT+NVLST V I+ VDK GRR LLLQ+ V M I Q IG +L L
Sbjct: 311 GFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILAKDL 370
Query: 364 KATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMF 423
T TL QA VV VC++VM FAWSWGPLGWLIPSETFPLETRT GFA AVS NMF
Sbjct: 371 DVTG-TLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNMF 429
Query: 424 FTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPV 483
FTF+IAQAFLSM+C M++ IFFFF+GWI+VMGLFALF +PETKGV ID M + VWK H
Sbjct: 430 FTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLHWY 489
Query: 484 WKRFM 488
WKRFM
Sbjct: 490 WKRFM 494
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
Identities = 313/482 (64%), Positives = 376/482 (78%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYC 66
F++K+TVYV +C ++AA GGL+FGYDIGISGGV+AMDDFL +FFP V++RK H E+NYC
Sbjct: 13 FEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYC 72
Query: 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNXXX 126
KYDNQ LQLFTSSLYLAAL ASFVAS C+K GR+PT+ AS FFL G G+++GA+N
Sbjct: 73 KYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVM 132
Query: 127 XXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL 186
N+AVPLFLSEIAP Q RG +NI+FQL VTIGI +AN+VNY TA +
Sbjct: 133 LIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYFTATV 192
Query: 187 HPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYE 246
HP+GWR++L AG+PA+ L GS++I ETPTSLIER G +AL+KIRGV+D+N EYE
Sbjct: 193 HPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVDDINDEYE 252
Query: 247 QIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFK 306
I A DIA QVK P+++L+K +S PP IIG+LLQ+FQQFTGINAIMFYAPVLFQTVGF
Sbjct: 253 SIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFYAPVLFQTVGFG 312
Query: 307 NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366
+DA+LLS+VITG++NVL+T V IY VD+ GRR LLLQ+ V M I Q IG +L L T
Sbjct: 313 SDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIILAKDLGVT 372
Query: 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTF 426
TL QA VV VC++VM FAWSWGPLGWLIPSETFPLETR+AGFA AVS NMFFTF
Sbjct: 373 G-TLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSCNMFFTF 431
Query: 427 LIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWKR 486
+IAQAFLSM+C MR+ IFFFF+GWI+VMGLFA F +PETKG+ ID M E VWK H WKR
Sbjct: 432 VIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKPHWFWKR 491
Query: 487 FM 488
+M
Sbjct: 492 YM 493
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1447 (514.4 bits), Expect = 3.4e-148, P = 3.4e-148
Identities = 283/488 (57%), Positives = 359/488 (73%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHA--RED 63
+F++KIT V++ I+AA GGLMFGYD+G+SGGVT+M DFL KFFP VY++ + ++
Sbjct: 14 EFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDS 73
Query: 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN 123
NYCKYDNQ LQLFTSSLYLA L A+F AS GR+ T+L+A FF+ G +++GA +
Sbjct: 74 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQD 133
Query: 124 XXXXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183
N+AVPLFLSEIAP + RG +NILFQL VTIGI ANLVNYGT
Sbjct: 134 LAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 193
Query: 184 AKLHPH-GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
AK+ GWR+SL LAG+PA+ L +G++++TETP SL+ERG G L++IRG ++V
Sbjct: 194 AKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTDNVE 253
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
E+ + AS +A++VKHPF+ L++R + P L+I V LQ+FQQ TGINAIMFYAPVLF T
Sbjct: 254 PEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFST 313
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362
+GF +DASL S+V+TG VNVLSTLVSIY+VDKVGRR LLL+A VQMF SQ I +L V
Sbjct: 314 LGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVK 373
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
+ TS L+ A VV ++C +V AFAWSWGPLGWLIPSETFPLETR+AG + V N+
Sbjct: 374 VTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FTF+IAQAFLSM+CH + IF FF+ W+L+M +F +FLLPETK +PI+ M ERVWKKH
Sbjct: 434 LFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHW 493
Query: 483 VWKRFMDD 490
W RFMDD
Sbjct: 494 FWARFMDD 501
|
|
| TAIR|locus:2025102 STP2 "sugar transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
Identities = 260/485 (53%), Positives = 342/485 (70%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYC 66
F +K+T V +C ++AA GGLMFGYDIGISGGVT+MD FL+ FFP VY++K E+NYC
Sbjct: 15 FPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHRVHENNYC 74
Query: 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNXXX 126
K+D+Q+LQLFTSSLYLA +FASF++S V FGRKPTI++AS FFL GA ++ A
Sbjct: 75 KFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAILNLSAQELGM 134
Query: 127 XXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL 186
N+ VPLF+SEIAP ++RG +N++FQ +TIGI A+ VNY T+ L
Sbjct: 135 LIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILAASYVNYLTSTL 194
Query: 187 HPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYE 246
+GWR SL A VPA+ L IGS I ETP SLIERG + G + L+KIRG+ED+ E+
Sbjct: 195 K-NGWRYSLGGAAVPALILLIGSFFIHETPASLIERGKDEKGKQVLRKIRGIEDIELEFN 253
Query: 247 QIKLASDIARQVKHPFKELMKRS-SMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
+IK A+++A +VK PFKEL +S + PPL+ G LLQ FQQFTGIN +MFYAPVLFQT+G
Sbjct: 254 EIKYATEVATKVKSPFKELFTKSENRPPLVCGTLLQFFQQFTGINVVMFYAPVLFQTMGS 313
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
++ASL+S+V+T VN ++T++S+ VD GRR LL++ +QM +Q TIGG+LL HLK
Sbjct: 314 GDNASLISTVVTNGVNAIATVISLLVVDFAGRRCLLMEGALQMTATQMTIGGILLAHLKL 373
Query: 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425
V+ L+C++V FAWSWGPLGWL+PSE +PLE R AG+ AV+ NM T
Sbjct: 374 VGPITGHAVPLIVLILICVYVSGFAWSWGPLGWLVPSEIYPLEVRNAGYFCAVAMNMVCT 433
Query: 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVWK 485
F+I Q FLS +C R+ +FFFF ++MGLF +F LPETKGVPI+ M E+ WK HP WK
Sbjct: 434 FIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEMAEKRWKTHPRWK 493
Query: 486 RFMDD 490
++ D
Sbjct: 494 KYFKD 498
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
Identities = 255/487 (52%), Positives = 348/487 (71%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDN-Y 65
++ +TV+V++ I+AA GGL+FGYD+GISGGVT+M++FL KFFPEV K+ AR + Y
Sbjct: 17 YEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAY 76
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNXX 125
CK+DNQ+LQLFTSSLYLAAL +SFVAS V K+GRK ++ V FL G+ ++ A N
Sbjct: 77 CKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVA 136
Query: 126 XXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
N++ P++LSE+AP + RGA+NI FQ+ +TIGI +ANL+NYGT++
Sbjct: 137 MLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQ 196
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+ +GWRVSL LA VPA+ + IGS V+ +TP S++ERG + L+KIRG ++V+ E+
Sbjct: 197 MAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEF 256
Query: 246 EQIKLASDIARQVKHPFKELMKRSSM-PPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVG 304
+ + A + A++V +P+K + +++ P L+ + FQQ TGIN IMFYAPVLF+T+G
Sbjct: 257 QDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLG 316
Query: 305 FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLK 364
F +DASL+S+VITG VNV+STLVSIYAVD+ GRR L L+ +QM +SQ +G ++ +
Sbjct: 317 FADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFG 376
Query: 365 AT-SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMF 423
T S TLT A +++ +CL+V FAWSWGPLGWL+PSE PLE R AG A VS NMF
Sbjct: 377 TTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMF 436
Query: 424 FTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPV 483
FTFLI Q FL+M+CHM+ +F+FF G + VM +F FLLPETKGVPI+ M RVWK+HP
Sbjct: 437 FTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEM-GRVWKQHPF 495
Query: 484 WKRFMDD 490
WKR+M D
Sbjct: 496 WKRYMPD 502
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
Identities = 251/490 (51%), Positives = 341/490 (69%)
Query: 6 DFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLH--ARED 63
D++ ++T +V++ I+AA GGL+FGYDIGISGGV +M+DFL KFFP+V ++ + RE
Sbjct: 15 DYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRET 74
Query: 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN 123
YCKYDN++L LFTSSLYLAALFASF+AS + FGRK ++++ S FL+GA ++ A+N
Sbjct: 75 EYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAIN 134
Query: 124 XXXXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183
N++VPL+LSE+AP + RGA+NI FQL +TIGI AN+VNY T
Sbjct: 135 LEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVT 194
Query: 184 AKLHPH-GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN 242
KL GWR+SL LAGVPA+ + +G + +TP S++ERGN+ + L+KIRG +V
Sbjct: 195 PKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRGTMEVE 254
Query: 243 AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302
E+ ++ A + A++VKHP+ +M+ P L + FQQ TGIN IMFYAPVLF+T
Sbjct: 255 HEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKT 314
Query: 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGML--L 360
+GF NDASL+S+VITG VNVLST+VSIY+VDK GRR L LQ QM ++Q +G M+
Sbjct: 315 IGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWK 374
Query: 361 VHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSS 420
N L+ A ++ L+CL+V FAWSWGPLGWL+PSE PLE R+AG + VS
Sbjct: 375 FGFNGEGN-LSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSV 433
Query: 421 NMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKK 480
NMFFTF I Q FL+M+CHM+ +F+FFAG +L+M +F FLLPETKGVPI+ M +VWK+
Sbjct: 434 NMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEM-GKVWKE 492
Query: 481 HPVWKRFMDD 490
H W ++ ++
Sbjct: 493 HRYWGKYSNN 502
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
Identities = 246/486 (50%), Positives = 342/486 (70%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDN-Y 65
++ +T +V++ I+AA GGL+FGYD+GISGGVT+M++FL KFFP+V + A+ D Y
Sbjct: 17 YEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAY 76
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNXX 125
CK+DNQ+LQLFTSSLYLAAL ASF+AS + K GRK ++ + FL GA ++ A+N
Sbjct: 77 CKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVS 136
Query: 126 XXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
N++ P++LSE+AP + RGA+NI FQ+ +TIGI +ANL+NYGT+K
Sbjct: 137 MLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSK 196
Query: 186 LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
+ HGWRVSL LA VPA+ + IGS ++ +TP S++ERG + LKKIRG ++V+ E+
Sbjct: 197 MAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEF 256
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305
+ + A + A++V++P+K +M+ P LI + FQQ TGIN IMFYAPVLF+T+GF
Sbjct: 257 QDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGF 316
Query: 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365
+DA+L+S+VITG VN+LST VSIYAVD+ GRR L L+ +QMFI Q +G +
Sbjct: 317 GDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGT 376
Query: 366 T-SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFF 424
+ + TLT A +++ +C++V FAWSWGPLGWL+PSE PLE R AG A VS NMFF
Sbjct: 377 SGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFF 436
Query: 425 TFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPVW 484
TFLI Q FL+M+CHM+ +F+FFA + +M +F FLLPETKGVPI+ M RVWK+H W
Sbjct: 437 TFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEM-GRVWKQHWFW 495
Query: 485 KRFMDD 490
K+++ +
Sbjct: 496 KKYIPE 501
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
Identities = 244/487 (50%), Positives = 333/487 (68%)
Query: 4 SEDFKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHARED 63
+E ++ K+T YV++ ++AA GG +FGYDIGISGGVT+MD+FL +FF VY++K A E
Sbjct: 16 AEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHES 75
Query: 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN 123
NYCKYDNQ L FTSSLYLA L ++ VAS + +GR+ +I+ FL G+G+++GA+N
Sbjct: 76 NYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVN 135
Query: 124 XXXXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183
N+AVPL+LSE+AP RG +N++FQL TIGIF AN+VNYGT
Sbjct: 136 LAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGT 195
Query: 184 AKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNA 243
+L P GWR+SL LA PA+ + +G + ETP SL+ERG G + L K+RG E+VNA
Sbjct: 196 QQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENVNA 255
Query: 244 EYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV 303
E + + AS++A +KHPF+ ++++ P L++ + + +FQ TGIN+I+FYAPVLFQT+
Sbjct: 256 ELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTM 315
Query: 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHL 363
GF +ASL SS +TG V VLST +SI VD++GRR LL+ +QM I Q + +L V
Sbjct: 316 GFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKF 375
Query: 364 KATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMF 423
+ L+ + VV +CLFV+AF WSWGPLGW IPSE FPLETR+AG + V+ N+
Sbjct: 376 -GDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLL 434
Query: 424 FTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPV 483
FTF+IAQAFL ++C + IF FFAGW+ VM +F FLLPETKGVPI+ M +W KH
Sbjct: 435 FTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMT-LLWSKHWF 493
Query: 484 WKRFMDD 490
WK+ + D
Sbjct: 494 WKKVLPD 500
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 243/487 (49%), Positives = 330/487 (67%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRK-LHAREDNY 65
++ +IT Y + I+ + GG +FGYD+G+SGGVT+MDDFL +FFP +YKRK +H E +Y
Sbjct: 18 YEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETDY 77
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVAS-SFFLAGAGISSGALNX 124
CKYDNQIL LFTSSLY A L ++F AS V +GR+ +ILV S SFFL G I++ A N
Sbjct: 78 CKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGV-INAAAKNI 136
Query: 125 XXXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTA 184
N+AVPL+LSE+AP + RG VN LFQL IGI +ANL+NY T
Sbjct: 137 LMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTE 196
Query: 185 KLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAE 244
++HP GWR+SL LA VPAI +F+G +V+ ETP SL+E+G L K+RG ++ AE
Sbjct: 197 QIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEAE 256
Query: 245 YEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVL-LQVFQQFTGINAIMFYAPVLFQTV 303
++ + ASD AR VK+PF+ L+ R + P L+IG + L FQQ TG+N+I+FYAPV+FQ++
Sbjct: 257 FQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSL 316
Query: 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHL 363
GF ASL+SS IT V++ ++S+Y+ DK GRR LLL+A V+MF +G L +
Sbjct: 317 GFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKF 376
Query: 364 KATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMF 423
L + +V L+CLFV+A+ SWGP+GWL+PSE FPLETR+AG + V N+F
Sbjct: 377 -GEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLF 435
Query: 424 FTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHPV 483
FT LIAQ FL +CH++ IF FAG IL MG F FLLPETK VPI+ V +W++H +
Sbjct: 436 FTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEE-VYLLWRQHWL 494
Query: 484 WKRFMDD 490
WK++++D
Sbjct: 495 WKKYVED 501
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
Identities = 235/488 (48%), Positives = 327/488 (67%)
Query: 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLH-AREDNY 65
+ K+T +V+ ++AA GGL+FGYDIGISGGVT+M FL +FFP VY+++ A + Y
Sbjct: 15 YPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQY 74
Query: 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNXX 125
C+YD+ L +FTSSLYLAAL +S VAS V KFGR+ ++L F AGA I+ A +
Sbjct: 75 CQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVW 134
Query: 126 XXXXXXXXXXXXXXXXNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK 185
N+AVPL+LSE+AP ++RGA+NI FQL +TIGI +A ++NY AK
Sbjct: 135 MLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAK 194
Query: 186 LHPH-GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAE 244
+ GWR+SL A VPA+ + IGS+V+ +TP S+IERG L++IRGV+DV+ E
Sbjct: 195 IKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVSQE 254
Query: 245 YEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVG 304
++ + AS ++ ++HP++ L++R P L + V++ FQQ TGIN IMFYAPVLF T+G
Sbjct: 255 FDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIG 314
Query: 305 FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH-- 362
F DASL+S+V+TG+VNV +TLVSIY VD+ GRR L L+ QM I Q+ + +
Sbjct: 315 FTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFG 374
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422
+ T L A VV +C++V FAWSWGPLGWL+PSE FPLE R+A + VS NM
Sbjct: 375 VDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNM 434
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKKHP 482
FTF+IAQ FL+M+CH++ +F FA +++VM +F LPETKG+PI+ M + VW+ H
Sbjct: 435 IFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQ-VWRSHW 493
Query: 483 VWKRFMDD 490
W RF++D
Sbjct: 494 YWSRFVED 501
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3605 | 0.8673 | 0.9299 | yes | no |
| Q41144 | STC_RICCO | No assigned EC number | 0.5204 | 0.9857 | 0.9235 | N/A | no |
| P40885 | HXT9_YEAST | No assigned EC number | 0.3042 | 0.9448 | 0.8165 | yes | no |
| Q9SBA7 | STP8_ARATH | No assigned EC number | 0.6913 | 0.9897 | 0.9566 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5050 | 0.9918 | 0.9529 | N/A | no |
| Q39524 | HUP2_PARKE | No assigned EC number | 0.5112 | 0.9816 | 0.8907 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5061 | 0.9836 | 0.9233 | N/A | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3150 | 0.8918 | 0.9418 | yes | no |
| P54862 | HXT11_YEAST | No assigned EC number | 0.3008 | 0.9469 | 0.8183 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 490 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-115 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-108 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-58 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 8e-18 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-13 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-11 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-05 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 4e-04 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.001 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.001 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 346 bits (891), Expect = e-115
Identities = 155/457 (33%), Positives = 243/457 (53%), Gaps = 21/457 (4%)
Query: 20 ILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSS 79
++AA GG +FGYD G+ G + F +F C + L S
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTS--------IGACAASTVLSGLIVSI 54
Query: 80 LYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGIS--SGALNIWMLIIGRILLGIG 137
+ L S A K+ +FGRK ++L+ + F+ GA + + + +MLI+GR+++G+G
Sbjct: 55 FSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLG 114
Query: 138 VGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK-LHPHGWRVSLA 196
VG + VP+++SEIAP + RGA+ L+QL +T GI +A ++ G K + GWR+ L
Sbjct: 115 VGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLG 174
Query: 197 LAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIAR 256
L VPAI L IG + + E+P L+ +G L K+RGV DV+ E ++ K + + +
Sbjct: 175 LQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSV 234
Query: 257 QVKHPFKE--LMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSS 314
+ + ++ L++GV+LQ+FQQ TGINAI +Y+P +F+T+G + L +
Sbjct: 235 EAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--LVT 292
Query: 315 VITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQ 374
+I G VN + T ++I+ VD+ GRR LLL M I +G LL K+
Sbjct: 293 IIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA------ 346
Query: 375 AGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLS 434
+ + LF+ FA WGP+ W+I SE FPL R A A ++N FLI F
Sbjct: 347 GIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPI 406
Query: 435 MMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPID 471
+ + Y+F FAG +++ LF F +PETKG ++
Sbjct: 407 ITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLE 443
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-108
Identities = 166/472 (35%), Positives = 245/472 (51%), Gaps = 27/472 (5%)
Query: 12 TVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQ 71
V + ++AA GGLMFGYD G+ GG A+ F KF N Y +
Sbjct: 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTS-----------ANSDSYSSS 71
Query: 72 ILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGA---GISSGALNIWMLI 128
+ L S + + A + +FGRK ++L+ + F+ GA G+++ AL++ MLI
Sbjct: 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLI 131
Query: 129 IGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLH- 187
+GR+LLGIGVG + VP++LSEIAP RGA+ L+QL +T GI +A G L+
Sbjct: 132 VGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN 191
Query: 188 PHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQ 247
GWR+ L L +PA LF+G + E+P L+ +G K+L ++RG + E
Sbjct: 192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLD 251
Query: 248 IKLASDIAR-----QVKHPFKEL--MKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF 300
DI R V+ + L R L +GV+LQ FQQFTGINAIM+Y+P +F
Sbjct: 252 ELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF 311
Query: 301 QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLL 360
+ G D + L S+I G VN T V+I+ VD+ GRR LLL M I +G +
Sbjct: 312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA 371
Query: 361 VHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSS 420
+ + + + + LF+ FA WGP+ W+I SE FPL R G + AV++
Sbjct: 372 SFVT----GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427
Query: 421 NMFFTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMGLFALFLLPETKGVPID 471
N F++ F +M+ + +F FF G ++ +F F LPETKG ++
Sbjct: 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 1e-58
Identities = 143/500 (28%), Positives = 228/500 (45%), Gaps = 67/500 (13%)
Query: 14 YVVVCWILAAFGGLMFGYDIG-ISGGVTAMDDFLI--KFFPEVYKRKLHAREDNYCKYDN 70
Y+ ++A GGL+FGYD ISG V +++ + + E L
Sbjct: 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLG---------- 58
Query: 71 QILQLFTSSLYL-----AALFASFVASKVCTKFGRKPTILVASS-FFLAGAG-------- 116
F + L + +++ FGR+ ++ +A+ FF++ G
Sbjct: 59 -----FCVASALIGCIIGGALGGYCSNR----FGRRDSLKIAAVLFFISALGSAWPEFGF 109
Query: 117 --ISSGALN-IWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGI 173
I + +I RI+ GIGVG + P++++EIAP RG + Q + G
Sbjct: 110 TSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ 169
Query: 174 FLANLVNYGTAK------LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVA 227
+ VNY A+ L+ GWR A +PA+ + + ETP L+ RG +
Sbjct: 170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQ 229
Query: 228 GHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFT 287
L+KI G ++IK + K K LM + ++IGV+L VFQQF
Sbjct: 230 AEGILRKIMGNTLATQALQEIK--HSLDHGRKTGGKLLMFGVGV--IVIGVMLSVFQQFV 285
Query: 288 GINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQ 347
GIN +++YAP +F+T+G D +LL ++I G +N+ T+++I VDK GR+ L + +
Sbjct: 286 GINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 345
Query: 348 MFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPL 407
M I GM + + ++F +V AFA SWGP+ W++ SE FP
Sbjct: 346 MAI------GMFSLGTAFYTQAPGIVALLSMLF----YVAAFAMSWGPVCWVLLSEIFPN 395
Query: 408 ETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFF--FFAGWIL-VMG-LFALF--- 460
R A AV++ + ++ F M + F F+ WI MG L ALF
Sbjct: 396 AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455
Query: 461 LLPETKGVPIDVMVERVWKK 480
+PETKG ++ M E +W+
Sbjct: 456 FVPETKGKTLEEM-EALWEP 474
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 8e-18
Identities = 103/410 (25%), Positives = 173/410 (42%), Gaps = 42/410 (10%)
Query: 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSG-ALNIWML 127
D + L S ++ L SFV + +FGRK +L+ S+ A +G+ + + N +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK-VLLLSTLVTAVSGVLTAFSPNYTVF 183
Query: 128 IIGRILLGIGV-GFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL 186
++ R+L+G+G+ G +AV L E P + R V L Q+F ++G+ L LV Y
Sbjct: 184 LVFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY----F 238
Query: 187 HPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVN---- 242
P WR +P F+ S + E+P LI +G +ALK ++ + +N
Sbjct: 239 IPD-WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR---IEEALKILQRIAKINGKKL 294
Query: 243 -AEYEQIKLASDIARQVKHP-FKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF 300
AE + L D++ K F +L + ++ + +++ F A +Y VL
Sbjct: 295 PAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-----TTAFSYYGLVLD 349
Query: 301 QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLL 360
N L I+G V + + L+++ +D++GRR + A + + + +
Sbjct: 350 LGNLGGNI--YLDLFISGLVELPAKLITLLLIDRLGRRYTMA-ASLLLAGVALLLLLFVP 406
Query: 361 VHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSS 420
V L L + F M + L +E +P R V S
Sbjct: 407 VDLYFLRTALAVLGKF---GITSAFQMVY---------LYTAELYPTVVRN--LGVGVCS 452
Query: 421 NMFFTFLIAQAFLSMMCHMRAYI-FFFFAGWILVMGLFALFLLPETKGVP 469
M I FL + ++ F G L+ G+ LF LPETKGVP
Sbjct: 453 TMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLF-LPETKGVP 501
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 44/351 (12%)
Query: 73 LQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRI 132
+ L ++ L A +A ++ +FGR+ +L+ F G + A ++W+L++ R+
Sbjct: 34 IGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRV 93
Query: 133 LLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWR 192
L G+G G A +++ P + RG L +G L L+ G GWR
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL--GGLLASLFGWR 151
Query: 193 VSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLAS 252
+ + + A+ + + ++ P +R A
Sbjct: 152 AAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV------------------ 193
Query: 253 DIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLL 312
P +L+ R + L++ +LL A++ Y P+ + +G + L
Sbjct: 194 --------PAWKLLLRDPVLWLLLALLL----FGFAFFALLTYLPLYQEVLGLSALLAGL 241
Query: 313 SSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTT 372
+ G + + L+ D++GRR+ LL A + + + + +G LL
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL--AALGLALLSL---------- 289
Query: 373 TQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMF 423
T++ + + L + A P + S+ P E R ++
Sbjct: 290 TESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 73 LQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRI 132
L S+ L S +A + +FGR+ +L+ F G+ + + A ++W+L++GR
Sbjct: 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF 95
Query: 133 LLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWR 192
LLG+G G A ++E P + RG LF +G L L+ A+ GWR
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES--LGWR 153
Query: 193 VSLALAGVPAIFLFIGSIVI 212
+ + + L + + +
Sbjct: 154 WLFLILAILGLLLALLLLFL 173
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 21/276 (7%)
Query: 75 LFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILL 134
LF++ L + F + + + GR+ +L + F + + A N+ L+I R L
Sbjct: 57 LFSAGL-IGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLA 115
Query: 135 GIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHP-HGWRV 193
G+G+G + +SE AP + RG L IG + + L P GWR
Sbjct: 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL---AGWLIPVFGWRS 172
Query: 194 SLALAGV-PAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLAS 252
+ G+ P + L + + E+ L+ + E + + + Q L
Sbjct: 173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPE----TVRRIVNAIAPQMQAEAQSALPE 228
Query: 253 DIARQ------VKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFK 306
A Q K F+ R ++ + LL G+ + + P L +GF
Sbjct: 229 QKATQGTKRSVFKALFQGKTARITV----LLWLLYFMLLV-GVYFLTNWLPKLMVELGFS 283
Query: 307 NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLL 342
+ + V+ +++ + D++G R L
Sbjct: 284 LSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 74/351 (21%), Positives = 134/351 (38%), Gaps = 56/351 (15%)
Query: 81 YLAALFASFVASKVCTKFGRKPTILV-----ASSFFLAGAGISSGALNIW---MLIIGRI 132
+LA + V + GRK T+++ L G S + IW +L++ R+
Sbjct: 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARL 104
Query: 133 LLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPH--- 189
+ G +G L+L+E AP RG Q+ +G+ LA L + L
Sbjct: 105 IQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164
Query: 190 ---GWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYE 246
GWR+ ++ V + + ETP +E
Sbjct: 165 LEWGWRIPFLVSAVLVLIGLYLRRNLEETP---------------------------VFE 197
Query: 247 QIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFK 306
+ A + ++ + P E + P ++G+ L + T + L QT+G
Sbjct: 198 K---AQEKHKKKRGPIAETL-TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS 253
Query: 307 NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366
+++LL +++ + ++ +S D++GRR +L+ V + + LL+ L +
Sbjct: 254 ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL----LAVPLLMALLDS 309
Query: 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFA 417
+ FLV + GP+G +P E FP E R G + A
Sbjct: 310 GSFT------LFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 15/194 (7%)
Query: 271 MPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSI 329
+ L++ + L F G ++ Y P+ Q V G + L + G +L L+
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232
Query: 330 YAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAF 389
D++GRR+LLL + G+LL L L + A +V L+ L
Sbjct: 233 LLSDRLGRRRLLL------------LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLG 280
Query: 390 AWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAG 449
P + SE P E R + L ++ F
Sbjct: 281 FAF--PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338
Query: 450 WILVMGLFALFLLP 463
+ ++ L LLP
Sbjct: 339 ALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 82 LAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFG 141
L L S ++ + +FGRKP +LV F+ + + + NI +LII R L G G F
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVP 201
A +++I P + RG L + +G L + G GWR +
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAIL 126
Query: 202 AIFLFIGSIVI 212
A+ FI +
Sbjct: 127 ALAAFILLAFL 137
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 75 LFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLA-GAGISSGALNIWMLIIGRIL 133
L S L + + + + + GR+ +L+ A G + + A ++ +L++ +L
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274
Query: 134 LGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRV 193
LG G+GF A+ SE+AP + RG + LF F ++G L L+ L G+
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLLDTGGYGG 332
Query: 194 SLALAGVPAIFLFIGSIVI 212
+ A+ + +++
Sbjct: 333 VFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 63/325 (19%), Positives = 108/325 (33%), Gaps = 34/325 (10%)
Query: 97 KFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQ 156
++GR+ ++ + F AG A + I R+++GIG+G + ++ E P
Sbjct: 73 RYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132
Query: 157 HRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETP 216
R + L +G +A V + GWR ++ +P IF I E
Sbjct: 133 LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA- 191
Query: 217 TSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLII 276
E E KAL + E+ + M +S+
Sbjct: 192 ----EDWKEKHAGKALVRTMVDILYGGEH--------RIANIVMTLAAAMVQSAGKRWPT 239
Query: 277 GVLLQVFQQFT-----GINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYA 331
V L V F I + L +G V + ++ V +
Sbjct: 240 FVYLVVLVLFANLYSHPIQDL--LPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFL 297
Query: 332 VDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAW 391
D +GRRK + + G +L++ + A + G + + +
Sbjct: 298 GDWLGRRKAYVCSL--------LAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGI---- 345
Query: 392 SWGPLGWLIPSETFPLETRTAGFAF 416
WG L + E FP + R AG F
Sbjct: 346 -WGILPKHL-GEYFPTDQRAAGLGF 368
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%)
Query: 78 SSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIG 137
+YL + +F + K GRK +L+ S A SS + R+L G G
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268
Query: 138 VGFGNEAVPLFLSEIAPVQHRGA-VNILFQLFVTIGIFLANLV-----NYG-----TAKL 186
+G V + +E + RG ++ L ++ GI+ A + +YG +
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328
Query: 187 HPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKI 235
H WRV + + P +F + E+P +E G LK I
Sbjct: 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 71/402 (17%), Positives = 126/402 (31%), Gaps = 33/402 (8%)
Query: 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWM 126
S+ + F + +FG + T+ V + G+ + A
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84
Query: 127 LIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL 186
L I R+LLG + L ++ P R +F +G + + L
Sbjct: 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI--L 142
Query: 187 HPHGWRVSLALAGVPAIFL-FIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245
W+ + + GV I + I + P K E+
Sbjct: 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP---------------QKAKWLTEEEKYIV 187
Query: 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPV-LFQTVG 304
LA + P K +K + G+ L F G+ + + P L Q G
Sbjct: 188 VGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERG 247
Query: 305 FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQST--IGGMLLVH 362
+ + + G V + ++ D + RR + ++ T I G++L
Sbjct: 248 LSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG------KSLVFARKTAIIAGLVLSL 301
Query: 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETR--TAGFAFAVSS 420
L +N + A + LV L F G +GW + S+ P T G ++ +
Sbjct: 302 LMFATNYVNIPYA--ALALVALGF--FGLGAGAIGWALISDNAPGNIAGLTGGLINSLGN 357
Query: 421 NMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLL 462
I ++ A A L+ L L L+
Sbjct: 358 LGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 82 LAALFASFVASKVCTKFGRKPTILVASSFFLAGAG---ISSGALNIWMLIIGRILLGIGV 138
L + ++ + GR+ +L+A + A + S + L++ +LLG G
Sbjct: 248 LLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGA 307
Query: 139 GFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLA 176
G A+ +S++AP + RG + L+ ++G L
Sbjct: 308 GLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/171 (14%), Positives = 57/171 (33%), Gaps = 23/171 (13%)
Query: 65 YCKY---DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS-- 119
Y Y + + + +AA+ + + + +FG+K T L+ G +
Sbjct: 248 YFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL 307
Query: 120 GALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPV-------QHRGAVNILFQLFVTIG 172
++W+ ++ +L GIG+G L+++ + G L+ +G
Sbjct: 308 PPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLG 367
Query: 173 IFLANLV----------NYGTAKLHPHG-WRVSLALAGVPAIFLFIGSIVI 212
L + + L +PA+ + +++
Sbjct: 368 GALGGAIVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLIL 418
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.84 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.74 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.74 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.73 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.7 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.7 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.58 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.5 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.48 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.47 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.46 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.44 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.43 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.43 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.41 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.4 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.4 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.4 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.39 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.38 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.37 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.37 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.37 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.35 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.34 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.34 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.33 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.33 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.32 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.31 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.31 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.3 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.3 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.3 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.3 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.29 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.29 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.28 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.28 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.27 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.27 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.27 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.27 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.27 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.25 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.25 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.25 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.24 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.24 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.22 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.22 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.22 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.22 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.21 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.2 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.19 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.19 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.18 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.18 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.18 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.17 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.16 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.15 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.15 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.14 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.14 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.13 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.11 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.1 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.1 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.1 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.09 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.09 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.09 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.09 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.08 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.08 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.06 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.05 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.02 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.02 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.01 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.0 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.99 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.99 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.99 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.98 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.97 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.96 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.94 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.89 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.88 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.87 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.85 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.83 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.81 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.81 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.81 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.8 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.78 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.77 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.77 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.71 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.71 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.68 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.66 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.65 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.62 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.6 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.6 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.58 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.52 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.5 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.42 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.41 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.35 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.34 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.33 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.32 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.26 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.23 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.23 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.22 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.2 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.16 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.14 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.11 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.09 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.08 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.04 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.03 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.03 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.86 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.85 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.71 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.65 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.5 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.42 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.41 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.33 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.33 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.16 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.11 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.85 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.72 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.66 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.31 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.21 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.18 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.85 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.51 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.38 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.81 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.59 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.26 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.96 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.83 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.81 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.0 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 90.95 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 90.5 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.31 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 86.31 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 85.25 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 84.75 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 83.87 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 83.15 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=366.88 Aligned_cols=462 Identities=29% Similarity=0.509 Sum_probs=391.7
Q ss_pred cccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHH
Q 040949 9 SKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFAS 88 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~ 88 (490)
++..++..+++..++++.|-+||..+++++. .+.+++|..+.+.++.+.+.+++ .-+...+.+.+++.+|.++|+
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~--~~~~lwS~~vs~f~iG~~~Gs 77 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDS--TLDLLWSLIVSIFFIGGMIGS 77 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888889999999998755 47888888888877766433332 134457888999999999999
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHH
Q 040949 89 FVASKVCTKFGRKPTILVASSFFLAGAGISSGA---LNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILF 165 (490)
Q Consensus 89 ~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 165 (490)
++.|+++||+|||..+.++.++..++.+++.++ +++++++++|++.|+..|......+.++.|..|++.||....+.
T Consensus 78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~ 157 (485)
T KOG0569|consen 78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLL 157 (485)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHH
Confidence 999999999999999999998888888777664 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhh-cCChHHHHHHHHHhhCchhhHHH
Q 040949 166 QLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIE-RGNEVAGHKALKKIRGVEDVNAE 244 (490)
Q Consensus 166 ~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 244 (490)
+.+..+|..++..++.-....+...|++.+.+..+++++.++...++||||||+.. |+|.++|++.++++++.++++++
T Consensus 158 ~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 158 QIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 99999999999888655455555789999999999999999999999999999998 89999999999999999876666
Q ss_pred HHHHHHHHHHH---hhcccchHHhcccCCC-chHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHH
Q 040949 245 YEQIKLASDIA---RQVKHPFKELMKRSSM-PPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTV 320 (490)
Q Consensus 245 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 320 (490)
.++..++.+++ ++++.+++++++++.. ++....+.+....+..+.....+|...++++.|++..++.+.....+..
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v 317 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIV 317 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 65544333332 2256789999987554 4556667777788889999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccccc
Q 040949 321 NVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLI 400 (490)
Q Consensus 321 ~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
..+.++++.++.||.|||++++.+..++.+..+++.......... .....+..+.+.+++...+..+.+|+.+.+
T Consensus 318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi 392 (485)
T KOG0569|consen 318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF-----GSWLSYLCIAAIFLFIISFAIGPGPIPWFI 392 (485)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHhhhcCCCchhHHH
Confidence 999999999999999999999999999988888776654422110 012223456778888889999999999999
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHhcc
Q 040949 401 PSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERVWKK 480 (490)
Q Consensus 401 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (490)
.+|++|++.|+.+.+.....+.+..++....+..+.+..|.+.++++.+.+.+..+..+..+||||+|+.+|+.++..++
T Consensus 393 ~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 393 GAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999984554433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=351.43 Aligned_cols=448 Identities=29% Similarity=0.534 Sum_probs=328.2
Q ss_pred cchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 040949 11 ITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFV 90 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~ 90 (490)
..+.+..++.++.++.+.++||.+++++.. +.+.+.|.+ ....+++++..+.+++.+++.++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~ 74 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVA---------PQNLSESAANSLLGFCVASALIGCIIGGAL 74 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhcc---------cccccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 345567777788889999999999988654 344444432 235566899999999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCcc
Q 040949 91 ASKVCTKFGRKPTILVASSFFLAGAGISSGA------------LNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHR 158 (490)
Q Consensus 91 ~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 158 (490)
+|+++||+|||++++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|
T Consensus 75 ~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r 154 (479)
T PRK10077 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIR 154 (479)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhh
Confidence 9999999999999999999999998888763 2356788999999999999999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhc------ccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHH
Q 040949 159 GAVNILFQLFVTIGIFLANLVNYGTA------KLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKAL 232 (490)
Q Consensus 159 ~~~~~~~~~~~~~G~~i~~~~~~~~~------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~ 232 (490)
++++++.+.+..+|.++++.++.... ..+..+||+.|++.+++.++..+..+++||+|+|+..+++.+++++..
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 234 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHH
Confidence 99999999999999999987754332 123479999999988888777666778999999998888888887777
Q ss_pred HHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHH
Q 040949 233 KKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLL 312 (490)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 312 (490)
++..+..+.+...++.++..++++. .....+. ..............+....+.....++.|.+.++.|.+......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~ 310 (479)
T PRK10077 235 RKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALL 310 (479)
T ss_pred HHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHH
Confidence 7765544333222222111111110 0111111 00011122222333444445556677889998888998887777
Q ss_pred HHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcc
Q 040949 313 SSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWS 392 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (490)
.....++..+++.++.++++||+|||+.+..+..+++++.+.+..... .............++..++...
T Consensus 311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 380 (479)
T PRK10077 311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY----------TQAPGIVALLSMLFYVAAFAMS 380 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh----------cCcccHHHHHHHHHHHHHHhcc
Confidence 777888899999999999999999999999988888887766654321 1111223333444455555555
Q ss_pred ccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH------Hhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040949 393 WGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMM------CHMRA-YIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
+.|..+.++.|.+|++.|+++.|+.+....++..+++.+++.+. +..++ ..+.+++..+.+..++.+++.||+
T Consensus 381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence 56777888899999999999999999999999999988777554 34443 345555555556666666678999
Q ss_pred CCCChHHHHHHHhccCCcc
Q 040949 466 KGVPIDVMVERVWKKHPVW 484 (490)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~ 484 (490)
|+++.+|. ++..++.+++
T Consensus 461 ~~~~~~~~-~~~~~~~~~~ 478 (479)
T PRK10077 461 KGKTLEEM-EALWEPETKK 478 (479)
T ss_pred CCCCHHHH-HHHHhhcccC
Confidence 99998887 7666555543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=352.36 Aligned_cols=440 Identities=17% Similarity=0.207 Sum_probs=313.1
Q ss_pred cccccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHH
Q 040949 7 FKSKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALF 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i 86 (490)
++.+..++++.++.+++++.+.++||.+.++.+.+ .+..++ . .++.+.+..+.+++.+.+.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~--~~~~~~--------~----~~~~~~~~~~~~~~~~~~~ig~~i 71 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTK--MLGYVY--------Y----HGKGPLPSSVSAAVNGSASIGTLA 71 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh--------c----cCcccchHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999876653 111111 0 112345777889999999999999
Q ss_pred HHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccch
Q 040949 87 ASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN------IWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGA 160 (490)
Q Consensus 87 ~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 160 (490)
+++++|+++||+|||+++.++.+++.++.++++++++ ++.++++|+++|++.|...+...+++.|++|+++|++
T Consensus 72 g~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~ 151 (502)
T TIGR00887 72 GQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGA 151 (502)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999988765 7899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcc---------------------cCCCchHHHHHhhHHHHHHHHHHhhcccCchhHH
Q 040949 161 VNILFQLFVTIGIFLANLVNYGTAK---------------------LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSL 219 (490)
Q Consensus 161 ~~~~~~~~~~~G~~i~~~~~~~~~~---------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~ 219 (490)
++++.+....+|.++++.++..... ....+||+++.+.++++++..+..+++||||||+
T Consensus 152 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l 231 (502)
T TIGR00887 152 MMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT 231 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999988543211 0124799999998888888777788899999999
Q ss_pred hhcCChH-HHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCc---hHHHHHHHHHHHHhhchhhHHHh
Q 040949 220 IERGNEV-AGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMP---PLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 220 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
..++|++ ++++.+++..+.+..++ .++.++.++++++.+.++++++++...+ +..+......+.....++....+
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 310 (502)
T TIGR00887 232 ADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLN 310 (502)
T ss_pred HHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 9887764 46666666543221111 0000000001111123577777543222 22333333333333345566777
Q ss_pred HHHHHHHcCCCCchhHH------------HHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhh
Q 040949 296 APVLFQTVGFKNDASLL------------SSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHL 363 (490)
Q Consensus 296 ~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (490)
.|.++++.|++..+.+. ......++.+++.++.++++||+|||+.+..+..+.+++..++.....
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~--- 387 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN--- 387 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH---
Confidence 89999888887543211 233344566778889999999999999988877777766655543221
Q ss_pred ccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh----
Q 040949 364 KATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM---- 439 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 439 (490)
...... ......+....+..+..++.+.+..|.+|++.|+++.|+.+..+.++++++|.+.+.+.+..
T Consensus 388 -------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (502)
T TIGR00887 388 -------HLSTHG-FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK 459 (502)
T ss_pred -------hcchhH-HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc
Confidence 001111 11122222222344556677788899999999999999999999999999999999998743
Q ss_pred ------h-hHHHHHHHHHHHHHHHHHHhhcccCCCCChHHH
Q 040949 440 ------R-AYIFFFFAGWILVMGLFALFLLPETKGVPIDVM 473 (490)
Q Consensus 440 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (490)
+ ...++++++++++.. +..+++||++++++||.
T Consensus 460 ~~~~~~~~~~~~~i~~~~~~~~~-i~~~~lpEt~~~~leei 499 (502)
T TIGR00887 460 GYPTGIWMGHVLEIFALFMFLGI-LFTLLIPETKGKSLEEL 499 (502)
T ss_pred cccccccchHHHHHHHHHHHHHH-HHheEeccCCCCCHHhh
Confidence 2 234555555555444 44567799999988776
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=345.05 Aligned_cols=423 Identities=19% Similarity=0.217 Sum_probs=317.5
Q ss_pred cchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 040949 11 ITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFV 90 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~ 90 (490)
..+++|.++++++++.+.+++|...++.+. |.+. ++++++..+.+++.++++++.++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~il--p~i~-----------------~~~gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVL--PSAE-----------------KDLCIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----------------HHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888899999999988876553 2322 234789999999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHH
Q 040949 91 ASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVT 170 (490)
Q Consensus 91 ~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 170 (490)
+|+++||+|||+++++++++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++..+..
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-----------cCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCch
Q 040949 171 IGIFLANLVNYGTAK-----------LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVE 239 (490)
Q Consensus 171 ~G~~i~~~~~~~~~~-----------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~ 239 (490)
+|.++++.++..... ....+||+.+++.+++.++.++..+++||||+|+..++|.+++.+.++++.+.+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999999987543321 122479999999888888777778889999999999999999999999887654
Q ss_pred hh-----HHHH--HHHHHHHHH------Hhhc------------------ccchHHhcccCCCchHHHHHHHHHHHHhhc
Q 040949 240 DV-----NAEY--EQIKLASDI------ARQV------------------KHPFKELMKRSSMPPLIIGVLLQVFQQFTG 288 (490)
Q Consensus 240 ~~-----~~~~--~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (490)
.. .... +..+..... +++. ..+++++++.+. ++..+.+.+.+++...+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~-~~~tl~l~~~wf~~~~~ 460 (742)
T TIGR01299 382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEV-REITIKLMGVWFTLSFG 460 (742)
T ss_pred CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccH-HHHHHHHHHHHHHHHHH
Confidence 21 1110 000000000 0000 013455565444 45556666667777788
Q ss_pred hhhHHHhHHHHHHHc------------------------------------------CC-----C---------------
Q 040949 289 INAIMFYAPVLFQTV------------------------------------------GF-----K--------------- 306 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~------------------------------------------g~-----~--------------- 306 (490)
++++..|+|.++++. |+ +
T Consensus 461 yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (742)
T TIGR01299 461 YYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVT 540 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeecc
Confidence 999999999876431 00 0
Q ss_pred C-----------------------------------------------------chhHHHHHHHhHHHHHHHHhhhhhhc
Q 040949 307 N-----------------------------------------------------DASLLSSVITGTVNVLSTLVSIYAVD 333 (490)
Q Consensus 307 ~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~d 333 (490)
. ........+..++.+++.+++++++|
T Consensus 541 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~D 620 (742)
T TIGR01299 541 SSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMD 620 (742)
T ss_pred ccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01133355667888999999999999
Q ss_pred ccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhH
Q 040949 334 KVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAG 413 (490)
Q Consensus 334 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 413 (490)
|+|||+++..+.++.+++.+++.+. . +....++..++.+++.. +..+....+++|++|++.|+++
T Consensus 621 r~GRr~~l~~~~~lsai~~ll~~~~-------------~-s~~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta 685 (742)
T TIGR01299 621 KIGRLRMLAGSMVLSCISCFFLSFG-------------N-SESAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATA 685 (742)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHH-------------c-cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999988888888777666542 1 12222333333333333 3345567788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 040949 414 FAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVP 469 (490)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (490)
+|+.+....+|++++|.+.+.+.+......+ ++++++.++++++..++||++++.
T Consensus 686 ~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf-~i~a~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 686 FGFLNALCKAAAVLGILIFGSFVGITKAAPI-LFASAALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhCCCCcccc
Confidence 9999999999999999999988775433344 444444444555556679988765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=329.82 Aligned_cols=455 Identities=39% Similarity=0.672 Sum_probs=365.9
Q ss_pred ccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCc--hHHHHHHHHHHHHHHHH
Q 040949 10 KITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDN--QILQLFTSSLYLAALFA 87 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~ 87 (490)
+........+.....+.+.++++ +..+...++...++...+.. +...+. .+.+++.+...++..++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~~s~~~lga~~g 105 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLY-----------DLSTGEYSVRQGLLTSILNLGALVG 105 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccc-----------ccccchhHHHHHHHHHHHHHHHHHH
Confidence 34456778888889999999998 53433344344444432111 111122 56799999999999999
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHH
Q 040949 88 SFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQL 167 (490)
Q Consensus 88 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 167 (490)
+++.|+++|++|||+.++++.+++.++++++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+.
T Consensus 106 ~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l 185 (513)
T KOG0254|consen 106 SLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQL 185 (513)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhC--chhhHHHH
Q 040949 168 FVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRG--VEDVNAEY 245 (490)
Q Consensus 168 ~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ 245 (490)
...+|..++..++...... ..+||..+.+..+++++..+..+++||+|+|+.++++.+++++.++++++ ..+.+.+.
T Consensus 186 ~~~~Gi~~~~~~~~~~~~~-~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~ 264 (513)
T KOG0254|consen 186 FITIGILLGYCINYGTSKV-YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVEL 264 (513)
T ss_pred HHHHHHHHHHHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999997775444332 15899999999999998877788899999999999999999999999998 34555555
Q ss_pred HHHHHHHHHHh---hcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHH
Q 040949 246 EQIKLASDIAR---QVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNV 322 (490)
Q Consensus 246 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 322 (490)
+..+.....+. +.+..+.+++++...++..+...+..+.+..+.....+|.+.+++..|.+... .......++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~ 343 (513)
T KOG0254|consen 265 ELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNF 343 (513)
T ss_pred HHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHH
Confidence 44442211111 12224677777556677888899999999999999999999999998887554 556667778888
Q ss_pred HHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccccccc
Q 040949 323 LSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPS 402 (490)
Q Consensus 323 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (490)
++..+...+.||+|||+.++.+...+.++.++++......... ........+..+...+++...+..++.++.+.+.+
T Consensus 344 ~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~s 421 (513)
T KOG0254|consen 344 LGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYY--PNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVS 421 (513)
T ss_pred HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccC--CCcccchhHHHHHHHHHHHHHHhcccccchhhhhh
Confidence 8888889999999999999999999999998887765432110 00123445677778888888889999999999999
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHHHHHHHHHHH-HHHhhcccCCCCChHHHHHHHhcc
Q 040949 403 ETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMGL-FALFLLPETKGVPIDVMVERVWKK 480 (490)
Q Consensus 403 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 480 (490)
|.+|.+.|+++.++....+.....+....+....+..+ ...+..+.+++.+... ..+..+||+|+++++|. ++..++
T Consensus 422 Eifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei-~~~~~~ 500 (513)
T KOG0254|consen 422 EIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEI-NELFEE 500 (513)
T ss_pred ccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHH-HHHHHc
Confidence 99999999999999999999999888888888777765 6677777777777777 78889999999999999 655444
Q ss_pred C
Q 040949 481 H 481 (490)
Q Consensus 481 ~ 481 (490)
+
T Consensus 501 ~ 501 (513)
T KOG0254|consen 501 G 501 (513)
T ss_pred C
Confidence 3
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=322.88 Aligned_cols=447 Identities=36% Similarity=0.626 Sum_probs=323.9
Q ss_pred ccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHh
Q 040949 10 KITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASF 89 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~ 89 (490)
+.+|+.+..+.++.++.++.++|...++...+......+ .+.+.+-+.+..+.+++.+++.++..++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 89 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFK-----------FTSANSDSYSSSLWGLVVSIFLVGGFIGAL 89 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHh-----------cCCcccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888999999888766542222111 111222246799999999999999999999
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHH
Q 040949 90 VASKVCTKFGRKPTILVASSFFLAGAGISSGA---LNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQ 166 (490)
Q Consensus 90 ~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 166 (490)
++|+++||+|||+++.++.++++++.+++.+. .+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+
T Consensus 90 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 169 (481)
T TIGR00879 90 FAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQ 169 (481)
T ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHH
Confidence 99999999999999999999999999998654 345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHH
Q 040949 167 LFVTIGIFLANLVN-YGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245 (490)
Q Consensus 167 ~~~~~G~~i~~~~~-~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 245 (490)
.+.++|..+++.++ ......+..+||+.|++.++..++..+..+++||+|++...+++.+++.+..++..+.++.+.+.
T Consensus 170 ~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
T TIGR00879 170 LAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKEL 249 (481)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHH
Confidence 99999999999995 11444456799999999777766666667789999998887777777666655544332211111
Q ss_pred HH----HHHHH-HHHhhcccchHHhcccC--CCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHh
Q 040949 246 EQ----IKLAS-DIARQVKHPFKELMKRS--SMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITG 318 (490)
Q Consensus 246 ~~----~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 318 (490)
.+ ..... .+.+..+..+.+.++.. ..++.++...+..+...........+.|.+.++.|++..+.+.......
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 329 (481)
T TIGR00879 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329 (481)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11 01111 11111122244444322 2345556666666666666677788889999999999988888888899
Q ss_pred HHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccc
Q 040949 319 TVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGW 398 (490)
Q Consensus 319 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (490)
++.+++.++.+++.||++||+.+..+..+..++.+.+.......... . ........+....++..+++.+..+...
T Consensus 330 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (481)
T TIGR00879 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG--S--SKSSGNVAIVFILLFIAFFAMGWGPVPW 405 (481)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC--c--ccchhHHHHHHHHHHHHHHHccccCeeh
Confidence 99999999999999999999998888777766666555322100000 0 0001333334444555555656667777
Q ss_pred ccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHH-HHHHHHHHHHHHHHHHhhcccCCCCChH
Q 040949 399 LIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYI-FFFFAGWILVMGLFALFLLPETKGVPID 471 (490)
Q Consensus 399 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (490)
.++.|.+|++.|+++.|+.+....++++++|.+.+.+.++.++.. +.+.++++++.+++.+++.||+++++.+
T Consensus 406 ~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 406 VIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 777999999999999999999999999999999999998877543 4444555555555556667887766544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=317.48 Aligned_cols=402 Identities=16% Similarity=0.207 Sum_probs=270.8
Q ss_pred HHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHH--HHHHHHHHHHHHHhhhhhh
Q 040949 17 VCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQL--FTSSLYLAALFASFVASKV 94 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--~~s~~~~~~~i~~~~~G~l 94 (490)
....++.++.++++||..+++... |...++|.|+. ++ ....++. ..++.++++.+++++.|++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~~---------~~----~~~~~~~~~~~~~~~l~~~ig~~~~G~l 80 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVA--YALGKVFFPGA---------DP----SVQMIAALATFSVPFLIRPLGGLFFGML 80 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCC---------Cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566789999999999987654 34444443221 10 0111222 2588889999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHH
Q 040949 95 CTKFGRKPTILVASSFFLAGAGISSGALNIWM--------LIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQ 166 (490)
Q Consensus 95 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 166 (490)
+||+|||+++.+++++++++++++++++|+++ ++++|+++|++.|..++...+++.|++|+++|+++.++..
T Consensus 81 ~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~ 160 (490)
T PRK10642 81 GDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLD 160 (490)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999875 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc------cCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchh
Q 040949 167 LFVTIGIFLANLVNYGTAK------LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVED 240 (490)
Q Consensus 167 ~~~~~G~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~ 240 (490)
.+..+|..+++.+...... ...+|||++|++.+++.++.++...++||+|+|...+++.++..+
T Consensus 161 ~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------- 230 (490)
T PRK10642 161 FGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------- 230 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc----------
Confidence 9988898888866422211 235799999999877666555556678999987543222111000
Q ss_pred hHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhH
Q 040949 241 VNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGT 319 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 319 (490)
+...++.+.++++++++ +++. ........+.....++....|.|.++++ .|++..+.+.......+
T Consensus 231 -----------~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~ 297 (490)
T PRK10642 231 -----------EGLQDGPKVSFKEIATK-HWRS-LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMI 297 (490)
T ss_pred -----------ccccccccCCHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00001123345666653 2222 2222222333344566777889999865 59888877777777788
Q ss_pred HHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccc
Q 040949 320 VNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWL 399 (490)
Q Consensus 320 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (490)
+.+++.++.|+++||+|||+.+..+..+..++...+.... ...+.........+.+.+.+.. ......
T Consensus 298 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~-~g~~~~ 365 (490)
T PRK10642 298 GMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-----------NSNVIGLIFAGLLMLAVILNCF-TGVMAS 365 (490)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8899999999999999999988776654433322211111 1112222222223333222222 223345
Q ss_pred cccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040949 400 IPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMGLFALFLLPETKGV 468 (490)
Q Consensus 400 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (490)
+..|.+|++.|+++.|+.+.....++.++|.+.+++.+..+ +.....+..+..+.+++..++.||++++
T Consensus 366 ~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 366 TLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANR 435 (490)
T ss_pred HHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 56789999999999998777777888999999999987654 2322223333344444455566887654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=365.40 Aligned_cols=441 Identities=32% Similarity=0.660 Sum_probs=340.3
Q ss_pred HHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 040949 21 LAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGR 100 (490)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr 100 (490)
++.++.+.+|||....+.....+.+...+..+. .+.+.+.+..+.++..+...+|..+|+++.|.++||+||
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GR 75 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSS--------SESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGR 75 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhcccccc--------ccccccchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 455677999999999877765444433332221 111112256788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHH
Q 040949 101 KPTILVASSFFLAGAGISSGAL---NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLAN 177 (490)
Q Consensus 101 r~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 177 (490)
|+.+.++.++..+++++.++++ |++.++++|++.|++.|...+....++.|..|+++|++..++.+.+..+|.+++.
T Consensus 76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcccC-CCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHh
Q 040949 178 LVNYGTAKLH-PHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIAR 256 (490)
Q Consensus 178 ~~~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (490)
.++....... ..+||..+++.++++++..+...++||||||+..|+|.|||++.+++.++.+..+++.++..++.++.+
T Consensus 156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (451)
T PF00083_consen 156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ 235 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence 8854332222 246999999999998888777888999999999999999999999997766554444444443333333
Q ss_pred hcccchHHhcccCC-CchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc
Q 040949 257 QVKHPFKELMKRSS-MPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV 335 (490)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 335 (490)
+.+.+++++++++. +++......+..+....+......|.+.+.++.+.+.. -.......+...++.+++..+.||+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
T PF00083_consen 236 ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF 313 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 33366777776644 44555555555555566667777888888888777766 2334455566777888888999999
Q ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHH
Q 040949 336 GRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFA 415 (490)
Q Consensus 336 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 415 (490)
|||+.+..+...++++.+.++........ .+.......+....+....+..++.++.+.+.+|++|++.|+++.|
T Consensus 314 GRr~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~ 388 (451)
T PF00083_consen 314 GRRKLLIIGLLLMAICSLILGIIFFLGVS-----SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIG 388 (451)
T ss_pred ccccccccccccccccccccccccccccc-----cccccccccceeeeeccccccccccccccccccccccccccccccc
Confidence 99999988888877776666411100000 0001133334444455556666778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHH
Q 040949 416 FAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMGLFALFLLPETKGVPIDVMVERV 477 (490)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (490)
+....+.+++++.+.+...+.+..+ ...+.++++++.+..++.++++||||+++++|. +++
T Consensus 389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei-~~~ 450 (451)
T PF00083_consen 389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI-QEM 450 (451)
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH-Hhh
Confidence 9999999999999999998888777 667777888888888888899999999999999 654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=314.75 Aligned_cols=384 Identities=20% Similarity=0.280 Sum_probs=281.1
Q ss_pred cccccCCC---chHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 040949 62 EDNYCKYD---NQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGV 138 (490)
Q Consensus 62 ~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 138 (490)
..+|+|++ ..+.++..+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.++++|++.|++.
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~ 194 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGI 194 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Confidence 46678888 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhH
Q 040949 139 GFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTS 218 (490)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 218 (490)
+...+...+++.|++|+++|+++.++...+..+|.++++.+++.. .+||+.+++.+++.++..+..+++||+|+|
T Consensus 195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI-----PDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 999999999999999999999999999999999999999985433 249999999999888777777889999999
Q ss_pred HhhcCChHHHHHHHHHhhCchhhH--HHHHHHH-HHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 219 LIERGNEVAGHKALKKIRGVEDVN--AEYEQIK-LASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
+..+++.+++.+.+++..+.+... .+..+.. ++...+++.+.+++++++++..++..+......+.....++.
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 345 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG---- 345 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH----
Confidence 999999999988887765433211 1111111 111111112356778887766555555444444433222222
Q ss_pred HHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhh
Q 040949 296 APVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQA 375 (490)
Q Consensus 296 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (490)
.+.+.+..+.+ ........++..+++.++.+++.||+|||+.+..+..+.+++.+++... +....
T Consensus 346 ~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~------------~~~~~ 410 (505)
T TIGR00898 346 LVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV------------PVDLY 410 (505)
T ss_pred HhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc------------CCCch
Confidence 22233334443 2344455677888899999999999999999988877777766555432 11111
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHH
Q 040949 376 GFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMG 455 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (490)
+.......+...+.. ...+..+.+.+|.+|++.|+++.|+.+....+|++++|.+.+ +.+......+.+++++..+ +
T Consensus 411 ~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~-~ 487 (505)
T TIGR00898 411 FLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALL-A 487 (505)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHH-H
Confidence 222233333333332 223455677899999999999999999999999999999988 4443333444444444444 4
Q ss_pred HHHHhhcccCCCCChHH
Q 040949 456 LFALFLLPETKGVPIDV 472 (490)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (490)
.+..+++||+++++++|
T Consensus 488 ~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 488 GILTLFLPETKGVPLPE 504 (505)
T ss_pred HHHHHcCcCCCCCCCCC
Confidence 44556789999887654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=287.42 Aligned_cols=400 Identities=13% Similarity=0.085 Sum_probs=292.3
Q ss_pred chHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 040949 12 TVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVA 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~ 91 (490)
++.++-+...+.++...+.+..-.++.. .|..+ |+.++|.+|+|++.|++.+.|.++-.+.
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a--~p~l~-----------------e~~~lsk~~lG~i~s~f~i~YG~sKf~~ 84 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLA--MPALI-----------------EDGGLSKTQLGILGSAFSITYGVSKFVM 84 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhc--cHHHH-----------------HhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666667766666655555433 33333 3347899999999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHH
Q 040949 92 SKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI 171 (490)
Q Consensus 92 G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 171 (490)
|.++||.++|+.+..++++.++.+++++++++.+.+.++-+++|..+|..+|.+...++.|+|++|||+..++++++.++
T Consensus 85 G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNi 164 (448)
T COG2271 85 GVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNI 164 (448)
T ss_pred hhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHH
Q 040949 172 GIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKL 250 (490)
Q Consensus 172 G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 250 (490)
|..+.|++........+.+||..|++.++++++..+. ++..+|+|+.. +..+.++..++..+
T Consensus 165 GGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-----------------GLP~ie~~~~d~~e 227 (448)
T COG2271 165 GGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-----------------GLPPIEEYRGDPLE 227 (448)
T ss_pred ccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------------CCCCHHHhhcCchh
Confidence 9999999853255555679999999999998887554 55588888421 11111111111111
Q ss_pred HHHHHhh-cccchHHhc-ccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHh
Q 040949 251 ASDIARQ-VKHPFKELM-KRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLV 327 (490)
Q Consensus 251 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 327 (490)
..+++++ +..+.++++ +...++|.+|.+++..+.....-+++..|.|.|+.+. |+|..++....+.+-.++++|+++
T Consensus 228 ~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll 307 (448)
T COG2271 228 IYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLL 307 (448)
T ss_pred hhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 1111111 113344443 4455568899999998888888999999999999665 999999999999999999999999
Q ss_pred hhhhhccc--CchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccC
Q 040949 328 SIYAVDKV--GRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETF 405 (490)
Q Consensus 328 ~g~l~d~~--g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (490)
+|+++||+ |||......+.+.....+...... +..+.+....++...++. -.+...+.-....|..
T Consensus 308 ~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-----------~~~~~~l~~~~l~~iGf~-IyGPqmLiGl~a~e~~ 375 (448)
T COG2271 308 AGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-----------PNGSYLLDAILLFIIGFL-IYGPQMLIGLAAAEFV 375 (448)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-----------CCccHHHHHHHHHHHHHH-HhhHHHHHHHHHhccc
Confidence 99999996 566655443333222222222110 222223333333333322 2233334455668999
Q ss_pred CccchhhHHHHHHHHHHH-HHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 040949 406 PLETRTAGFAFAVSSNMF-FTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFAL 459 (490)
Q Consensus 406 p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (490)
|++..|++.|+...++.+ |...+....|++.|..||...++...+..+.+.+.+
T Consensus 376 pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 376 PKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred cHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999 888999999999898776655554444444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=279.42 Aligned_cols=373 Identities=16% Similarity=0.177 Sum_probs=284.4
Q ss_pred HHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 040949 14 YVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASK 93 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~ 93 (490)
..+...+...++.|..+.+..+...++ |+. .+|+|+|..+.|++.|.|.+++.+++++...
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLL--p~i-----------------A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~ 70 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLL--PPI-----------------AADLGVSEGAAGQLITAYALGVALGAPLLAL 70 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhch--HHH-----------------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566677787777777776554 333 4556999999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHH
Q 040949 94 VCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGI 173 (490)
Q Consensus 94 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 173 (490)
+.||+.||++++..+.++.++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHH
Q 040949 174 FLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLAS 252 (490)
Q Consensus 174 ~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 252 (490)
++|.++ +.+..+..|||..|++.+.++++..+. +..+| |+..
T Consensus 151 v~GvPL--Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--------------------------------- 193 (394)
T COG2814 151 VLGVPL--GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--------------------------------- 193 (394)
T ss_pred HHhccH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC---------------------------------
Confidence 999999 666667789999999999998887554 55688 2100
Q ss_pred HHHhhcccc---hHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhh
Q 040949 253 DIARQVKHP---FKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVS 328 (490)
Q Consensus 253 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 328 (490)
.++.+.+ ..+.+|++ + .+...+..+....+.+...+|...++++ .|++.+..++....++++.++|+.++
T Consensus 194 --~~~~~~~~~~~~~~l~~p---~-v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~g 267 (394)
T COG2814 194 --SGSLPGPLRTLLRLLRRP---G-VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG 267 (394)
T ss_pred --CCCCCcchhHHHHHhcCc---h-HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 0011122 23344442 2 3334444444445555666666555555 59999999999999999999999999
Q ss_pred hhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCcc
Q 040949 329 IYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLE 408 (490)
Q Consensus 329 g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 408 (490)
|++.|| +.|+.+.....+..+..+.+.+. ..+.+.......+.+...... .........+ .-++
T Consensus 268 Grl~dr-~~~~~l~~~~~l~a~~~l~l~~~-------------~~~~~~~~~~~~~wg~a~~~~-~~~~~~~~a~-~~p~ 331 (394)
T COG2814 268 GRLADR-GPRRALIAALLLLALALLALTFT-------------GASPALALALLFLWGFAFSPA-LQGLQTRLAR-LAPD 331 (394)
T ss_pred hhhccc-cchhHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHhhhh-hhHHHHHhcc-cCCC
Confidence 999999 88888887777777766665542 234444444444433333222 1222333344 3357
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccc
Q 040949 409 TRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPE 464 (490)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (490)
.++.+.+++....++|..+|..+.|.+.|+.++......+++..+.+........+
T Consensus 332 ~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 332 AADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999988777667776666666665554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=295.60 Aligned_cols=396 Identities=19% Similarity=0.203 Sum_probs=261.1
Q ss_pred cccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHH---HHHHHHHHHHHH
Q 040949 9 SKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQIL---QLFTSSLYLAAL 85 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~~ 85 (490)
+..+.+++.....++++.+++++|..+++... |.+.+++.|+ +.+..+. +...+..+++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 77 (432)
T PRK10406 14 SSDTRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPS--------------GNTTTQLLQTAGVFAAGFLMRP 77 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC--------------CCchHHHHHHHHHHHHHHHHHH
Confidence 44556666667777888999999999876553 3444444321 2234433 344455555666
Q ss_pred HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCc
Q 040949 86 FASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW--------MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQH 157 (490)
Q Consensus 86 i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 157 (490)
++++++|+++||+|||+++..+.++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999988764 68899999999999999999999999999999
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHhcc------cCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHH
Q 040949 158 RGAVNILFQLFVTIGIFLANLVNYGTAK------LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKA 231 (490)
Q Consensus 158 r~~~~~~~~~~~~~G~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~ 231 (490)
|+++.++...+...|.++++.+...... .+.+|||++|++.++++++.......+||+|++..+
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---------- 227 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR---------- 227 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh----------
Confidence 9999999999988888888876332221 124799999999888877665555567887642100
Q ss_pred HHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchh
Q 040949 232 LKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDAS 310 (490)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 310 (490)
+++.+.+++++++++ +.........+.....++....|.|.++++ .|++..+.
T Consensus 228 -----------------------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~ 281 (432)
T PRK10406 228 -----------------------ALKEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVA 281 (432)
T ss_pred -----------------------hhcccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 000122455665532 222222222222234456677889998865 59988888
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhh
Q 040949 311 LLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFA 390 (490)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
+.......++..++.++.|+++||++||+.+.....+..+....+..... ...+.........+.....+
T Consensus 282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 351 (432)
T PRK10406 282 SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ----------NVSSPYAAFGLVMCALLIVS 351 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHH
Confidence 88888878888888889999999999998776655543332221111110 11111211111111111111
Q ss_pred ccccccccccccccCCccchhhHHHHHHHHHHH-HHHHHHHHhHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040949 391 WSWGPLGWLIPSETFPLETRTAGFAFAVSSNMF-FTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMGLFALFLLPETKGV 468 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (490)
...+....+.+|.+|++.|+++.|+.+..++. .+...|.+.+. .+..+ +...+++.++..+++++..+++ ++++|
T Consensus 352 -~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~l-~~~~~ 428 (432)
T PRK10406 352 -FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLML-HRKGK 428 (432)
T ss_pred -HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh-hhccc
Confidence 11234456678999999999999999987665 34456666664 45555 3344444444444444444443 33444
Q ss_pred C
Q 040949 469 P 469 (490)
Q Consensus 469 ~ 469 (490)
+
T Consensus 429 ~ 429 (432)
T PRK10406 429 G 429 (432)
T ss_pred c
Confidence 3
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=295.64 Aligned_cols=382 Identities=16% Similarity=0.118 Sum_probs=268.2
Q ss_pred HHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 040949 14 YVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASK 93 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~ 93 (490)
++|.....++++.+++++|...++...+ . ..+|+|+|.++.|++.+++.+++.+++++.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~-----------------l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~ 65 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGL--T-----------------MGKDLGLSATMFGLAATLFYAAYVICGIPSNI 65 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHH--h-----------------hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455666666777888888888765532 1 24566899999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHH
Q 040949 94 VCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGI 173 (490)
Q Consensus 94 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 173 (490)
++||+|||+++..++++++++++++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.
T Consensus 66 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 145 (412)
T TIGR02332 66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM 145 (412)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc----cCCCchHHHHHhhHHHHHHHHH-HhhcccCchhH---HhhcCChHHHHHHHHHhhCchhhHHHH
Q 040949 174 FLANLVNYGTAK----LHPHGWRVSLALAGVPAIFLFI-GSIVITETPTS---LIERGNEVAGHKALKKIRGVEDVNAEY 245 (490)
Q Consensus 174 ~i~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~ 245 (490)
++++.++..... .+..|||+.|++.+++.++..+ ..+++||+|+. +.++ +.+...++.++.....++.
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~~~~~~~~~ 221 (412)
T TIGR02332 146 ALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDNDQLTLEQP 221 (412)
T ss_pred HHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHhcccccccc
Confidence 999999654432 1346999999998888776644 45668898842 2111 1111111111000000000
Q ss_pred HHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc--CCCCchhHHHHHHHhHHHHH
Q 040949 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV--GFKNDASLLSSVITGTVNVL 323 (490)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~ 323 (490)
++ ...+.....+..+++++ .+.++...+..++.......+..|.|.+++++ |.+..+++.......++.++
T Consensus 222 ~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~ 294 (412)
T TIGR02332 222 EG--AFAHAAMPQRSMLREIF-----TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIF 294 (412)
T ss_pred cc--ccccccccHHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHH
Confidence 00 00000000011122222 13355666666666667788889999999875 67778888889999999999
Q ss_pred HHHhhhhhhcccCchHHH-HHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccccccc
Q 040949 324 STLVSIYAVDKVGRRKLL-LQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPS 402 (490)
Q Consensus 324 ~~~~~g~l~d~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (490)
+.++.|+++||+++|+.. ........++. .+.. ...+.........+...+.. ...+..+....
T Consensus 295 g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 359 (412)
T TIGR02332 295 GMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLAS-------------ATDHNLIQLLGIIMASMGSF-SAMAIFWTTPD 359 (412)
T ss_pred HHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHH-------------hcCCHHHHHHHHHHHHHHhh-hhhhHHHhhcc
Confidence 999999999999977653 33332222222 1111 01111211222222222221 11233345556
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 403 ETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 403 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
|.+|++.|+++.|+.+...++|++++|.+.|.+.+..+
T Consensus 360 ~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 360 QSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred cccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 88999999999999999999999999999999999876
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=290.14 Aligned_cols=386 Identities=15% Similarity=0.159 Sum_probs=280.3
Q ss_pred ccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHh
Q 040949 10 KITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASF 89 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~ 89 (490)
+..+++|....++.+..+.+++|....+... |.+. +++|+|+.+.|++.+.+.++..++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------------~~~~~s~~~~g~~~~~~~~~~~~~~~ 68 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAA--PRMA-----------------QEFGLDVAQMGWAFSAGILGLLPGAL 68 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----------------HHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444788888888888899999987776543 2332 23488999999999999999999999
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHH
Q 040949 90 VASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFV 169 (490)
Q Consensus 90 ~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 169 (490)
+.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus 69 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 148 (406)
T PRK11551 69 LGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGV 148 (406)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH-HhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHH
Q 040949 170 TIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI-GSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQI 248 (490)
Q Consensus 170 ~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 248 (490)
.+|..+++.++ ....+..+||+.|++.++..++..+ ...++||+|++..++++.++.
T Consensus 149 ~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------- 206 (406)
T PRK11551 149 PFGGALASVIG--VLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-------------------- 206 (406)
T ss_pred HHHHHHHHHHH--HHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------------
Confidence 99999999984 3444567899999998776655543 445678887543222111000
Q ss_pred HHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhh
Q 040949 249 KLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVS 328 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 328 (490)
+...+..+++...++ ........+...........|.|.++++.|+++.+.+.......++.+++.++.
T Consensus 207 ----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 275 (406)
T PRK11551 207 ----------APVLRALFGEGRATA-TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLI 275 (406)
T ss_pred ----------hhhHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 000011111111111 112222222333344566778899999899999999999999999999999999
Q ss_pred hhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCcc
Q 040949 329 IYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLE 408 (490)
Q Consensus 329 g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 408 (490)
|++.||+++|+.+..+.....++.+.+.. . ++.+.......+.+.+.. +..+....+..|.+|++
T Consensus 276 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~ 340 (406)
T PRK11551 276 GALMDRLRPRRVVLLIYAGILASLAALAA-------------A-PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQ 340 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHh-------------c-CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchh
Confidence 99999999999887755554444333322 1 122222233333333322 33455567778999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH-HHHHHHHHHHHHHHHHHhhc
Q 040949 409 TRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY-IFFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 462 (490)
.|+++.|+.+....++..++|.+.|.+.+..+.. ..+.....+.+.++++.+..
T Consensus 341 ~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 341 VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876543 33333333444444444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=291.23 Aligned_cols=373 Identities=16% Similarity=0.167 Sum_probs=266.1
Q ss_pred hHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhh
Q 040949 13 VYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVAS 92 (490)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G 92 (490)
+.++.....+.++.+.+++|.....+.. |.+ .+++|+|+.+.+++.+++.+++.+++++.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i-----------------~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g 74 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIM--YLI-----------------KADLGLTDMEGAFLATAAFIGRPFGGALFG 74 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHH-----------------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677777888888887765443 222 334588999999999999999999999999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHH
Q 040949 93 KVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIG 172 (490)
Q Consensus 93 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 172 (490)
+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+|+|+++.++...+.++|
T Consensus 75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 154 (426)
T PRK12307 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIG 154 (426)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHH
Q 040949 173 IFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLAS 252 (490)
Q Consensus 173 ~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 252 (490)
.++++.+. ....+..+||+.|++..+..++........||++++..++.+. .++. .+
T Consensus 155 ~~~~~~l~--~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~---------~~ 211 (426)
T PRK12307 155 NIIAAYFM--PSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKH---------SQ 211 (426)
T ss_pred HHHHHHHH--HHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccc---------cc
Confidence 99999884 3444567999999986554433333333356665432111000 0000 00
Q ss_pred HHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhh
Q 040949 253 DIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAV 332 (490)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 332 (490)
+..+..+.+++++++++..+....... ..+...........+.|.++++.|.++.+.+.......++.++++++.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~ 290 (426)
T PRK12307 212 SAWSVFSLSMKGLFNRAQFPLTLCVFI-VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCA 290 (426)
T ss_pred cchhhhhHHHHHHHhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011123455665544333222222 2222233334466788999988899988889888889999999999999999
Q ss_pred cccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHh-hccccccccccccccCCccchh
Q 040949 333 DKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAF-AWSWGPLGWLIPSETFPLETRT 411 (490)
Q Consensus 333 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~ 411 (490)
||++||+....+..+..+..+.+... .. ..... ....+++.+. ..+..+....++.|.+|++.|+
T Consensus 291 dr~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 356 (426)
T PRK12307 291 DRIGLKKTFSIGLLMSFLFIFPLFRI------------PQ-DNYLL-LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG 356 (426)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHH------------cc-ccHHH-HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh
Confidence 99999998877766555443333221 11 11111 1122222221 1122334445668999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 412 AGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
++.|+.+....+++.++|.+.|.+.+..+..
T Consensus 357 ~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 357 LGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 9999999999999999999999999888744
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=292.27 Aligned_cols=404 Identities=14% Similarity=0.088 Sum_probs=269.4
Q ss_pred chHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 040949 12 TVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVA 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~ 91 (490)
++.++.......++.+...++...++... |.+. +++|+|.++.|++.+.+.+++.+++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 78 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAAM--PEML-----------------ADLGLSRSDIGLLATLFYITYGVSKFVS 78 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhh--HHHH-----------------HhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555556666676666665554332 2332 3358899999999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHH
Q 040949 92 SKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI 171 (490)
Q Consensus 92 G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 171 (490)
|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++
T Consensus 79 G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~ 158 (434)
T PRK11663 79 GIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV 158 (434)
T ss_pred hHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHH-HHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHH
Q 040949 172 GIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLF-IGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKL 250 (490)
Q Consensus 172 G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 250 (490)
|..+++.++. ...+..+||+.|++.+++.++.. +..+++||+|++...+...++.++ .++
T Consensus 159 g~~~~~~~~~--~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------~~~------- 219 (434)
T PRK11663 159 GGALIPLVVG--AIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD----------ALE------- 219 (434)
T ss_pred HHHHHHHHHH--HHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc----------ccc-------
Confidence 9999999843 34455799999999888766553 344567888754211110000000 000
Q ss_pred HHHHHhhcccchHHhccc-CCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhh
Q 040949 251 ASDIARQVKHPFKELMKR-SSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVS 328 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 328 (490)
..++.++.+.+.++.++. ..+.+.++...+..+........+..|.|.+++ +.|++..+++...+...++..+++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~ 299 (434)
T PRK11663 220 LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVA 299 (434)
T ss_pred cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011122222211 112233444444444444455667788899985 469999999999999999999999999
Q ss_pred hhhhccc--CchHHHH-HhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccC
Q 040949 329 IYAVDKV--GRRKLLL-QACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETF 405 (490)
Q Consensus 329 g~l~d~~--g~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (490)
|++.||+ ++|+... .......+....+... ...+...........+.+ ..+..........|.+
T Consensus 300 g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 366 (434)
T PRK11663 300 GWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM------------PFASYVMQAACFFTIGFF-VFGPQMLIGMAAAECS 366 (434)
T ss_pred hhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc------------ccccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcc
Confidence 9999998 3333322 2222211111111110 111112221222222211 1111222234457999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH-HHHHHHHhhcccCC
Q 040949 406 PLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWIL-VMGLFALFLLPETK 466 (490)
Q Consensus 406 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 466 (490)
|++.|+++.|+.+...++|+.++|.+.|.+.|+.++...+...+++. +.++..+...++++
T Consensus 367 ~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 367 HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999888665555444444 44433433444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=300.61 Aligned_cols=395 Identities=9% Similarity=-0.039 Sum_probs=267.5
Q ss_pred HHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 040949 15 VVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKV 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l 94 (490)
.+.+...++++.++...|...++... |.+ .+++|+|.++.|++.+.+.+++.+++++.|++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~--~~i-----------------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l 87 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQ--NDM-----------------ISTYGLSTTELGMIGLGFSITYGVGKTLVGYY 87 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhh--HHH-----------------HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 45556666666666677777766443 333 34458999999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHH
Q 040949 95 CTKFGRKPTILVASSFFLAGAGISSG-----ALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFV 169 (490)
Q Consensus 95 ~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 169 (490)
+||+|||+++..+.++++++.+..++ +++++.+++.|+++|++.+...|...+++.||+|+++|++++++...+.
T Consensus 88 ~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~ 167 (467)
T PRK09556 88 ADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISH 167 (467)
T ss_pred hhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeeccc
Confidence 99999999999988888887776665 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc-CCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHH
Q 040949 170 TIGIFLANLVNYGTAKL-HPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQ 247 (490)
Q Consensus 170 ~~G~~i~~~~~~~~~~~-~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 247 (490)
++|.++++.++...... ...+||..|.+.+++.++..+. .++.+++|+....++ .++ . .++..+.++
T Consensus 168 ~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~---~---~~~~~~~~~---- 236 (467)
T PRK09556 168 NLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK-AEE---I---FGEPISEED---- 236 (467)
T ss_pred chhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-hhh---c---ccCccchhh----
Confidence 99999999885333221 1236999998888877766444 344577664211110 000 0 000000000
Q ss_pred HHHHHHHHhhcccchHH-----hcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHHH
Q 040949 248 IKLASDIARQVKHPFKE-----LMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTVN 321 (490)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 321 (490)
+..++.+.+..+ .+++ +.++...+..++..........|.|.|+++ +|++..+++.......++.
T Consensus 237 -----~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 237 -----KETESTDMTKWQIFVEYVLKN----PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred -----hccccccCcHHHHHHHHHHcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 000000111111 3333 445666666666555666788899998865 6999999999988899999
Q ss_pred HHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccc
Q 040949 322 VLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIP 401 (490)
Q Consensus 322 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (490)
+++.++.|+++||+++|+.......+..++...+.. . ...+.+.......+.+.... +.........
T Consensus 308 ~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~ 374 (467)
T PRK09556 308 LVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-Q-----------HATSEYMYLASLFALGFLVF-GPQLLIGVAA 374 (467)
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-H-----------hcCcHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 999999999999999988765544333322211111 0 11122222233333332211 1111222445
Q ss_pred cccCCccchhhHHHHHHHHHHH-HHHHHHHHhHHHHH------------hhhhHHHHHHHHHHHHHHHHHHhh
Q 040949 402 SETFPLETRTAGFAFAVSSNMF-FTFLIAQAFLSMMC------------HMRAYIFFFFAGWILVMGLFALFL 461 (490)
Q Consensus 402 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 461 (490)
.|.+|++.+|++.|+.+..+++ +++++|.+.|.+.| ..++...+.+..++.+++.+..+.
T Consensus 375 ~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 375 VGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999997 77999999999999 445554444444444444444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=284.35 Aligned_cols=392 Identities=14% Similarity=0.139 Sum_probs=259.8
Q ss_pred HHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHH-----HHHHHHHHHHHh
Q 040949 15 VVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFT-----SSLYLAALFASF 89 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~~~~~i~~~ 89 (490)
++.......++.++++||..+++...+ ....++++| +.++. .+++. ++.+++..++++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 82 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAA-LVFNREFFP---------------QVSPA-MGTLAAFATFGVGFLFRPLGGV 82 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---------------CCCcH-HHHHHHHHHHHHHHHHHhhHHH
Confidence 345666777889999999988765431 011222222 22333 34443 355677789999
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchH
Q 040949 90 VASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW--------MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAV 161 (490)
Q Consensus 90 ~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 161 (490)
+.|+++||+|||+++..+.+++++++++++++++++ .++++|+++|++.|..++....++.|++|+|+|++.
T Consensus 83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~ 162 (438)
T PRK09952 83 VFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFY 162 (438)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHH
Confidence 999999999999999999999999999999999987 588899999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcc------cCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHh
Q 040949 162 NILFQLFVTIGIFLANLVNYGTAK------LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKI 235 (490)
Q Consensus 162 ~~~~~~~~~~G~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~ 235 (490)
.+....+..+|.+++..+...... ....|||++|++.+++.++........||+|+|...+++.++.
T Consensus 163 ~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------- 235 (438)
T PRK09952 163 SSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------- 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-------
Confidence 999999999999988766432221 1247999999998887665555555678888653322111000
Q ss_pred hCchhhHHHHHHHHHHHHHHhhcccchHH-hcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHH
Q 040949 236 RGVEDVNAEYEQIKLASDIARQVKHPFKE-LMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLS 313 (490)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 313 (490)
+.+.+..+ +++++ +.........++.....+....|.|.++++ .|++.......
T Consensus 236 ---------------------~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~ 291 (438)
T PRK09952 236 ---------------------KKRIPVIEALLRHP---GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNI 291 (438)
T ss_pred ---------------------cccCCHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 00111111 22221 222222222333333455666788888754 58877655555
Q ss_pred HHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccc
Q 040949 314 SVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSW 393 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (490)
....++..+++.++.|+++||++||+.+..+..+..++.+.+..... .....+..+....+.+.+.+. .
T Consensus 292 ~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~-~ 360 (438)
T PRK09952 292 GLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----------AQSIFWIVFFSIMLANIAHDM-V 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHHHHHH-H
Confidence 55667777888899999999999999887765554443322221110 111222222222332333222 2
Q ss_pred cccccccccccCCccchhhHHHHHHHHHH-HHHHHHHHHhHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 394 GPLGWLIPSETFPLETRTAGFAFAVSSNM-FFTFLIAQAFLSMMCHMR--AYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
.+..+.+..|.+|++.|+++.++.+.... +++.++|.+.+++.+..+ +...+.+..++.+++.+..+..+|+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 34456777899999999999999776654 889999999999988543 4444455555555555555666653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=284.64 Aligned_cols=386 Identities=16% Similarity=0.132 Sum_probs=271.5
Q ss_pred cchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 040949 11 ITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFV 90 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~ 90 (490)
.++++|.....+.++.+.+++|....++.. |.+ .+++|+|..+.+++.+.+.++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l-----------------~~~~~~s~~~~g~~~~~~~~~~~~~~~~ 66 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEV-----------------AGEFGLTTVDAASLISAALISRWFGALM 66 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HHHhCCChhhHHHHHHHHHHHHHHHHHH
Confidence 456677777788888899999888876553 222 3345889999999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHH
Q 040949 91 ASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVT 170 (490)
Q Consensus 91 ~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 170 (490)
.|+++||+|||+++..+.++.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 67 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 146 (405)
T TIGR00891 67 FGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYA 146 (405)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHH
Q 040949 171 IGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKL 250 (490)
Q Consensus 171 ~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 250 (490)
+|.++++.++.........+||+.|++.+++.++.++....+||++++..++++.++..+..++..+..+..+
T Consensus 147 ~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 219 (405)
T TIGR00891 147 VGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA------- 219 (405)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh-------
Confidence 9999999985544333223599999987776666655566688887654333222221111111111000000
Q ss_pred HHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhh
Q 040949 251 ASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSI 329 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g 329 (490)
+..++...+.++. ....++.....................+.|.+++ +.|++..+.+.......++.+++.++.+
T Consensus 220 --~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 295 (405)
T TIGR00891 220 --NIVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFG 295 (405)
T ss_pred --hhhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000001110 1111122222222222222223445566777775 4699999999999999999999999999
Q ss_pred hhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccc
Q 040949 330 YAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLET 409 (490)
Q Consensus 330 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 409 (490)
++.||++||+.+..+.....+....... ...+.+.......+.+.... +..+....++.|.+|++.
T Consensus 296 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 361 (405)
T TIGR00891 296 FLGDWLGRRKAYVCSLLAGQLLIIPVFA-------------IGANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQ 361 (405)
T ss_pred HHHHHhCchhhhHHHHHHHHHHHHHHHH-------------hCCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcch
Confidence 9999999999887766544332222111 11122222222233222222 333445567789999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 410 RTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
|+++.|+.+....+++.++|.+.|.+.|..|
T Consensus 362 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 362 RAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999888
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=281.00 Aligned_cols=340 Identities=13% Similarity=0.094 Sum_probs=246.1
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|+++++++|+++|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIE 221 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~ 221 (490)
+...+++.|++|+++|++++++...+.++|..++|+++. ...+..|||+.|++.+++.++..+. ..++||+|+
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~--~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---- 189 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR--VIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS---- 189 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----
Confidence 999999999999999999999999999999999999954 3445579999999998887766444 344666542
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ 301 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
+ +++ ..++.++.+|++..+... ...+...........+.+.+++
T Consensus 190 ~-~~~-------------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~ 233 (390)
T PRK03545 190 E-HSG-------------------------------SLKSLPLLFRRPALVSLY----LLTVVVVTAHFTAYSYIEPFVQ 233 (390)
T ss_pred C-Ccc-------------------------------hHHHHHHHHhCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000123344443222211 1122222222333455565665
Q ss_pred H-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 302 T-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 302 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
+ .|.+..+++.......++.++++++.+++.||+++|... .+..+...+...+.. ...+.+....
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~-------------~~~~~~~~~~ 299 (390)
T PRK03545 234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLP-------------AANSEWHLSV 299 (390)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHH-------------HhchHHHHHH
Confidence 5 599999999999999999999999999999999987644 333333333222211 1122333334
Q ss_pred HHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALF 460 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (490)
...+.+.+.. ...+.....+.|..| +.|+++.|+.+....+|..++|.+.|.+.|..+....+...+.+.+.+++...
T Consensus 300 ~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 300 LSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 4444444432 223334455567766 67899999999999999999999999999999876555555555554444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=255.91 Aligned_cols=387 Identities=18% Similarity=0.216 Sum_probs=292.6
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
++..+.+..|.+++......+..+++..+|..+|++|||+.+.+..+...+...+.+.++|+..+++.|.+.|+|.|+ .
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~ 183 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-L 183 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-c
Confidence 455578899999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhc
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIER 222 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 222 (490)
|...++-.|..|..+|..-+-.. ..+.+|.++...++.+ ...+.||||.....+.+..+...+..++|||||+...+
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~--vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~ 260 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWG--VMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK 260 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc
Confidence 99999999999999999877777 9999999999999543 44567999999999888888888889999999999999
Q ss_pred CChHHHHHHHHHhhCchhhH-----------HHHHH----HH-HHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHh
Q 040949 223 GNEVAGHKALKKIRGVEDVN-----------AEYEQ----IK-LASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQF 286 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (490)
+++++|.+.++++.+.|... .+.++ .. ...+..++.+.+..+++....+ +..+.....++.+.
T Consensus 261 G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lr-kttlllw~iwfgna 339 (528)
T KOG0253|consen 261 GDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLR-KTTLLLWRIWFGNA 339 (528)
T ss_pred CChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHH-HHHHHHHHHHHhhH
Confidence 99999999999887665311 11111 11 1111223345566677765443 43444444455544
Q ss_pred hchhhHHHhHHHHHHHcC--------------------CCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhH
Q 040949 287 TGINAIMFYAPVLFQTVG--------------------FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACV 346 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 346 (490)
..+++.......+.+... .+...-..-..+..+..++|.++.+++.||+|||+.+....+
T Consensus 340 fsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~ 419 (528)
T KOG0253|consen 340 FSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLI 419 (528)
T ss_pred HHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHH
Confidence 455555554444443321 112222344566778999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHH
Q 040949 347 QMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTF 426 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 426 (490)
++++..+++... ..........+..-.+...+ ..+.+.|..|++|+..|+++.|.++.++++|++
T Consensus 420 ~f~iflfll~~c--------------~~rn~~tvllf~arafisg~-fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI 484 (528)
T KOG0253|consen 420 LFGIFLFLLTTC--------------KTRNAYTVLLFTARAFISGA-FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI 484 (528)
T ss_pred HHHHHHHHHHHh--------------cCcchhHHHHHHHHHHHhch-heEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence 888776666542 12222333334444444433 446789999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCh
Q 040949 427 LIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKGVPI 470 (490)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (490)
+.|.+. ...+..-+.+.+++.+++++.++..+++-.|+|+|++
T Consensus 485 ~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 485 FSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999988 4344444556777777777777777777779999864
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=280.05 Aligned_cols=360 Identities=18% Similarity=0.254 Sum_probs=237.9
Q ss_pred HHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHH-HHHH-----HHHHHHHHhhh
Q 040949 18 CWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLF-TSSL-----YLAALFASFVA 91 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~~~~~i~~~~~ 91 (490)
....+.++.+++.+|...++... |.+.++ ++.++.+.+.+ .+.. .++..+++++.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 76 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA--TAIAKT-----------------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVL 76 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----------------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56677789999999999987554 233222 35555554433 3322 23335789999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHh
Q 040949 92 SKVCTKFGRKPTILVASSFFLAGAGISSGALNIW--------MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNI 163 (490)
Q Consensus 92 G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 163 (490)
|+++||+|||++++.+.+++++++++++++++++ .++++|+++|++.+...+....++.|++|+++|+++++
T Consensus 77 G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 156 (434)
T PRK15075 77 GAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS 156 (434)
T ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence 9999999999999999999999999999999987 46889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc------cCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhC
Q 040949 164 LFQLFVTIGIFLANLVNYGTAK------LHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRG 237 (490)
Q Consensus 164 ~~~~~~~~G~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~ 237 (490)
+...+.++|..+++.++..... .+..|||++|++..+...+........||++++..+++
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-------------- 222 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-------------- 222 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh--------------
Confidence 9999888888888877543321 24579999999755443222222223344331110000
Q ss_pred chhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHH
Q 040949 238 VEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVI 316 (490)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 316 (490)
+.+.+..+++..++ ++......+..+.....+.....|.|.++++ .|++..+.+.....
T Consensus 223 -----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~ 282 (434)
T PRK15075 223 -----------------RPSMREIFRSLAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLC 282 (434)
T ss_pred -----------------ccccccHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00001111111111 1222222233333444566788889999976 59998888888888
Q ss_pred HhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccc
Q 040949 317 TGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPL 396 (490)
Q Consensus 317 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (490)
..++.+++.++.|+++||++||+.+..+..+..+.......... .............+.+.+.+ ...+.
T Consensus 283 ~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g-~~~~~ 351 (434)
T PRK15075 283 VGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV----------AAPSFARMLAVELWLSFLYG-SYNGA 351 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----------cCCchHHHHHHHHHHHHHHH-HHHhh
Confidence 88999999999999999999999877654433222111111100 11111111111222222222 22333
Q ss_pred ccccccccCCccchhhHHHHHHHHHHH-HHHHHHHHhHHHHHhhhh
Q 040949 397 GWLIPSETFPLETRTAGFAFAVSSNMF-FTFLIAQAFLSMMCHMRA 441 (490)
Q Consensus 397 ~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 441 (490)
...+..|.+|++.|+++.++.+..... ++.++|.+.+.+.|..++
T Consensus 352 ~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 352 MVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 445678999999999999997665554 588899999999998774
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=281.12 Aligned_cols=399 Identities=15% Similarity=0.144 Sum_probs=270.2
Q ss_pred chHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 040949 12 TVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVA 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~ 91 (490)
+++++.....+.++.+++++|....++.. |.+ .+++|+|..+.+++.+.+.+++.+++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i-----------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 75 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVL--TEV-----------------QGEFGLTTVQAASLISAAFISRWFGGLLL 75 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777788888888887765443 222 23458899999999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHH
Q 040949 92 SKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI 171 (490)
Q Consensus 92 G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 171 (490)
|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+.++
T Consensus 76 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 155 (496)
T PRK03893 76 GAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI 155 (496)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHH-HHH
Q 040949 172 GIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQ-IKL 250 (490)
Q Consensus 172 G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ 250 (490)
|..+++.++ ....+..+||+.|++.++..++.++....+||++++..++++.++.++..+.....+........ ...
T Consensus 156 g~~~~~~~~--~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (496)
T PRK03893 156 GAVVAAQVY--SLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAA 233 (496)
T ss_pred HHHHHHHHH--HHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHH
Confidence 999999994 44455689999998765554444444455788776543322221111111111100000000000 000
Q ss_pred ---H-HHHHhhcccch-------------HHh-c-ccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchh
Q 040949 251 ---A-SDIARQVKHPF-------------KEL-M-KRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDAS 310 (490)
Q Consensus 251 ---~-~~~~~~~~~~~-------------~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 310 (490)
. ..........+ ... . .....++.........+...........+.|.+++ +.|++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~ 313 (496)
T PRK03893 234 AAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTV 313 (496)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHH
Confidence 0 00000000000 000 0 01111222222222223222223345678899995 679999999
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhh
Q 040949 311 LLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFA 390 (490)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
+...+...++.+++.++.|++.||+++|+.+..+..+..+..+.+... .....+ ............+
T Consensus 314 g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~ 380 (496)
T PRK03893 314 ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI------------GGANVW-VLGLLLFFQQMLG 380 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc------------cccHHH-HHHHHHHHHHHHh
Confidence 999999999999999999999999999998776655444433322211 111212 2222222222222
Q ss_pred ccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Q 040949 391 WSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIF 444 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (490)
.+..+....++.|.+|++.|++++|+.+....+++.++|.+.|.+.+..++...
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~ 434 (496)
T PRK03893 381 QGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTA 434 (496)
T ss_pred cccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHH
Confidence 233344456678999999999999999999999999999999999998875533
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=272.05 Aligned_cols=437 Identities=20% Similarity=0.256 Sum_probs=316.0
Q ss_pred ccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHh
Q 040949 10 KITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASF 89 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~ 89 (490)
...|++...+.++..|.|.++||...++.+. +.+...|..- ....=|.++...+.+..+..+|.++|++
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt---~il~~lY~~~--------~~~~g~~ps~i~~~Vn~~A~vGti~GQl 102 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVT---KILGYLYYHG--------DESGGHYPSGVLALVNAAALVGTIFGQL 102 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHH---HHHHHHhcCC--------CCCCCcCCchHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999987664 3333332221 1111256788889999999999999999
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHH
Q 040949 90 VASKVCTKFGRKPTILVASSFFLAGAGISSGAL-------NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVN 162 (490)
Q Consensus 90 ~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 162 (490)
+.|+++||+|||+++...++++.+++++++++. -.+++...|++.|+|.|+.+|...+..+|...+++||...
T Consensus 103 ~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~i 182 (538)
T KOG0252|consen 103 FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFI 182 (538)
T ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccccee
Confidence 999999999999999999999999999888752 2578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc-----CC--------CchHHHHHhhHHHHHHHHHHhhcccCchhHHhhc-CChHHH
Q 040949 163 ILFQLFVTIGIFLANLVNYGTAKL-----HP--------HGWRVSLALAGVPAIFLFIGSIVITETPTSLIER-GNEVAG 228 (490)
Q Consensus 163 ~~~~~~~~~G~~i~~~~~~~~~~~-----~~--------~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~-~~~~~a 228 (490)
+.+.+..+.|...|.+++...... .. .=||..+.+.++++++.+...+.+|||++|.... ++.++|
T Consensus 183 aavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a 262 (538)
T KOG0252|consen 183 AAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQA 262 (538)
T ss_pred EEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhh
Confidence 998888888888877764332210 00 2499999999999998888889999999987433 333344
Q ss_pred HHHHHHhhCchhhHHHHHHHHHHHHHHhhcccc---hHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCC
Q 040949 229 HKALKKIRGVEDVNAEYEQIKLASDIARQVKHP---FKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305 (490)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 305 (490)
.+..++.... +.++.+......+..+.+ +...+..+ .-+.++..+..+|..-..++....+...++++.|+
T Consensus 263 ~~d~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~ 336 (538)
T KOG0252|consen 263 AGDMKKVLSV-----DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGV 336 (538)
T ss_pred hhcccccccc-----ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhcc
Confidence 3222221111 000000001111111222 22222222 22556777778888888888888888999998887
Q ss_pred CCchhHH---------HHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhH
Q 040949 306 KNDASLL---------SSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAG 376 (490)
Q Consensus 306 ~~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (490)
.+.+... ...+...+.++|..+...++|++||++..+.++.++++..+.++... + ...+..
T Consensus 337 ~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y---------~-~~~~~~ 406 (538)
T KOG0252|consen 337 IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPY---------N-QLENTI 406 (538)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCc---------c-cccccC
Confidence 6655433 12233344455777778899999999999999999988877776521 0 011223
Q ss_pred HHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH-----hhhhHHHHHHHHHH
Q 040949 377 FVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC-----HMRAYIFFFFAGWI 451 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 451 (490)
...++..+..+....+.+.....+.+|.+|++.|++..|+....+..|++++...+.++.+ ..+....++....+
T Consensus 407 Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~ 486 (538)
T KOG0252|consen 407 GFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGC 486 (538)
T ss_pred ceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHH
Confidence 3344445555555666667778888999999999999999999999999999999999998 44444444455555
Q ss_pred HHHHHHHHhhcccCCCCChHHH
Q 040949 452 LVMGLFALFLLPETKGVPIDVM 473 (490)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~ 473 (490)
.+.+.+..+++||+++++++|.
T Consensus 487 ~~~gi~~T~l~pEtk~~~leei 508 (538)
T KOG0252|consen 487 MLLGILFTLLIPETKGKSLEEI 508 (538)
T ss_pred HHHhHheeEEeecccccCHHHh
Confidence 6666677778899999999887
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=268.51 Aligned_cols=337 Identities=12% Similarity=0.033 Sum_probs=231.1
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|+++++++|+++|++.+. .
T Consensus 18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~ 96 (368)
T TIGR00903 18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-L 96 (368)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-H
Confidence 345589999999999999999999999999999999999987766555545443333347999999999999999996 5
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH-HhhcccCchhHHhh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI-GSIVITETPTSLIE 221 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~ 221 (490)
+.....++|++|+++|++++++.+.+.++|.+++++++. ...+..|||+.|++.++++++..+ ..+++||+|++..+
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~--~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~ 174 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGL--KIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAE 174 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 566667799999999999999999999999999999854 444568999999998888777644 45568998854210
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ 301 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
+. + . + +. ..++++++++ +..+...+..++....++.+..|+|.+++
T Consensus 175 --~~-~---------------~--~------~~----~~~~~~ll~~----~~~~~~~~~~~~~~~~~~~~~~wlp~~L~ 220 (368)
T TIGR00903 175 --GF-G---------------F--K------DA----VKEFGALAGR----KDLWIIGAILGFGVALFDNLAIWLEAALR 220 (368)
T ss_pred --Cc-c---------------h--H------HH----HHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 0 00 0124566665 34566666677777778888999999998
Q ss_pred HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCch---HHHHH-hhHHHHHHHHHHHHHHHHhhccccCcccchhhHH
Q 040949 302 TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRR---KLLLQ-ACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGF 377 (490)
Q Consensus 302 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (490)
+.|++.. .+.......+.+.++ .++++||..|| +.... ...+.++....+.. . .+...
T Consensus 221 ~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~-------------~-~~~~~ 282 (368)
T TIGR00903 221 PAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF-------------E-LNRLA 282 (368)
T ss_pred HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-------------c-cccHH
Confidence 8888764 555555555555544 46777776543 33222 22222222212111 1 11222
Q ss_pred HHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHHHHHHHHHHH
Q 040949 378 VVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMGL 456 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 456 (490)
.+....+.+.+ .....+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. + ...+..++....+.++
T Consensus 283 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~ 359 (368)
T TIGR00903 283 LFAFIGIAGLL-MLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFA 359 (368)
T ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 22233333322 222234456778899999999999999999999999999999988874 3 2344445544444444
Q ss_pred H
Q 040949 457 F 457 (490)
Q Consensus 457 ~ 457 (490)
.
T Consensus 360 ~ 360 (368)
T TIGR00903 360 I 360 (368)
T ss_pred H
Confidence 3
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=268.81 Aligned_cols=347 Identities=13% Similarity=0.072 Sum_probs=249.9
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 36 RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 34558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCC-CchHHHHHhhHHHHHHHHHHhhcc-cCchhHHh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHP-HGWRVSLALAGVPAIFLFIGSIVI-TETPTSLI 220 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~ 220 (490)
+....++.|++| ++|+++++++..+..+|..+++.++... .++ .+||+.+.+.++..++..+..+.. ++.|+
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL--VQHSETWYQTLAWWALPAVVALFAWWWQSAREVA--- 189 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 999999999997 8899999999999999999998885433 233 489999877666554443333222 22220
Q ss_pred hcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHH
Q 040949 221 ERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF 300 (490)
Q Consensus 221 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
.+ +++ +.+..+.+++ +..+...+..+.....+.....|.|.++
T Consensus 190 ----~~----------------------------~~~-~~~~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~~lp~~l 232 (393)
T PRK09705 190 ----SS----------------------------HKT-TTTPVRVVFT----PRAWTLGVYFGLINGGYASLIAWLPAFY 232 (393)
T ss_pred ----cc----------------------------cCC-CcCCcccccC----HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 0011122222 2233333344444455667888899999
Q ss_pred HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 301 QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 301 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
+++|.+..+++.......++.++++++.+++.||++||+....+..+..++...+... +. +.....
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~------------~~-~~~~~~- 298 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL------------PL-QLPVLW- 298 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc------------cc-hHHHHH-
Confidence 8899999999999999999999999999999999999988887766665555433321 11 111111
Q ss_pred HHHHHHHHhhccccccccccccccC-CccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHHHHH-HHHHHHH
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETF-PLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFFAGW-ILVMGLF 457 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~ 457 (490)
..+.+.+.+.. .+.......+.. |++.+++..|+.+....+++.++|.+.|++.|..| +...+....+ +.+..+.
T Consensus 299 -~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK09705 299 -AMVCGLGLGGA-FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII 376 (393)
T ss_pred -HHHHHHhccch-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 22223333322 333333334555 46789999999999999999999999999999887 3443444333 3333344
Q ss_pred HHhhcccCCCC
Q 040949 458 ALFLLPETKGV 468 (490)
Q Consensus 458 ~~~~~~~~~~~ 468 (490)
...+.||++++
T Consensus 377 ~~~~~~~~~~~ 387 (393)
T PRK09705 377 TLRFAPARFPQ 387 (393)
T ss_pred HHHhccccccc
Confidence 45566676654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=277.99 Aligned_cols=375 Identities=13% Similarity=0.036 Sum_probs=246.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL----NIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~ 142 (490)
|+|.++.|++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+.+++.+ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999888763 78889999999999999988
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHH-HHHHHHHHhcccCCCchHHHHHhhHHHHHHH-HHHhhcccCchhHHh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIF-LANLVNYGTAKLHPHGWRVSLALAGVPAIFL-FIGSIVITETPTSLI 220 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~esp~~~~ 220 (490)
+.....+.|++|+++|++++++.+.+.++|.. .+|+++..... ..+||+.|++.+++.++. ++..+++||+|+...
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~ 216 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW--FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCG 216 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence 98888999999999999999999999999864 45554322221 248999999988877665 444566788875321
Q ss_pred hcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcc-cCCCchHHHHHHHHHHHHhhchhhHHHhHHHH
Q 040949 221 ERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMK-RSSMPPLIIGVLLQVFQQFTGINAIMFYAPVL 299 (490)
Q Consensus 221 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
.+++ ++.++ + . +++. +.+++.+.+.++.++ ...+.+.++...+..++..........|.|.+
T Consensus 217 ~~~~-~~~~~---~---~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~ 279 (452)
T PRK11273 217 LPPI-EEYKN---D---Y---PDDY-------NEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 279 (452)
T ss_pred CCCh-hhhhh---c---c---cccc-------ccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11000 0 0 0000 000001111222111 11112445555555544444556777899999
Q ss_pred HHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc--CchHHHHH-hhHHHHHHHHHHHHHHHHhhccccCcccchhh
Q 040949 300 FQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV--GRRKLLLQ-ACVQMFISQSTIGGMLLVHLKATSNTLTTTQA 375 (490)
Q Consensus 300 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (490)
+++ .|++..+++.......++.+++.++.|+++||+ +||+.... ...+..++.+.+.. . ...+.
T Consensus 280 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~-~-----------~~~~~ 347 (452)
T PRK11273 280 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL-N-----------PAGNP 347 (452)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH-h-----------cccCh
Confidence 976 589988888888888899999999999999998 44443222 11222222211111 0 11122
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHH-HHHHhHHHHHhhhhHHHHHHHHHHHHH
Q 040949 376 GFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFL-IAQAFLSMMCHMRAYIFFFFAGWILVM 454 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (490)
+.........+.... ........+..|.+|++.||++.|+.+....+++.+ +|.+.|.+.|+.++...+.....+.+.
T Consensus 348 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~ 426 (452)
T PRK11273 348 TVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 426 (452)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHH
Confidence 222222222222211 111122334569999999999999999998888765 799999999998866555444444444
Q ss_pred HHHHHhhcccCCCCChHHH
Q 040949 455 GLFALFLLPETKGVPIDVM 473 (490)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~ 473 (490)
+++....+...++|+.||.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~ 445 (452)
T PRK11273 427 AVILLIVVMIGEKRHHEEL 445 (452)
T ss_pred HHHHHHHHhccccchHHHH
Confidence 5554444444444444444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=263.64 Aligned_cols=332 Identities=15% Similarity=0.146 Sum_probs=239.8
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+++|+++++.|+..+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...
T Consensus 47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHh-hcccCchhHHhh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGS-IVITETPTSLIE 221 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~ 221 (490)
+...+++.|++|+|+|++++++...+.++|..++|+++ ....+..+||+.|++.++++++..+.. ...||+|+.
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~--~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~--- 201 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLG--SFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE--- 201 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---
Confidence 99999999999999999999999999999999999995 444456799999999887766654433 336665410
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh-HHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY-APVLF 300 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 300 (490)
+. +.+.+..+.+++ +.++...+..+...........+ .|.+.
T Consensus 202 --~~-------------------------------~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 244 (394)
T PRK10213 202 --PS-------------------------------HQKQNTFRLLQR----PGVMAGMIAIFMSFAGQFAFFTYIRPVYM 244 (394)
T ss_pred --cc-------------------------------cchhHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000112233333 22333323233322333344445 47777
Q ss_pred HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 301 QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 301 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
++.|+++.+.+......+++.+++.++.+++.||.+ |+.+.....+..+....+... .++.+....
T Consensus 245 ~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~-------------~~~~~~~~~ 310 (394)
T PRK10213 245 NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW-------------GSDKIVATG 310 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHH
Confidence 778999999999999999999999999999999954 444333333333332222211 123333444
Q ss_pred HHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWIL 452 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
...+.+.++... .+...+.+.+..| +.+++..+......+++..+++.+.|.+.|..+....+..+++..
T Consensus 311 ~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 311 VAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 444455444332 3444445567777 456677777778889999999999999999888665555554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=275.80 Aligned_cols=386 Identities=12% Similarity=0.000 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 040949 14 YVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASK 93 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~ 93 (490)
++|.....++++.++..+|.++++... |++.+ ++|.+.++.+|+.+.+.++..++.+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~--p~i~~-----------------~l~~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAA--PTLSM-----------------TLGASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------------HhCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888899999999999987653 34433 34889999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcC-CCCccchHHhHHHHHHHHH
Q 040949 94 VCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIA-PVQHRGAVNILFQLFVTIG 172 (490)
Q Consensus 94 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G 172 (490)
++||+|||+++..+.++++++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++++.....++|
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888887765 6789999999999999999
Q ss_pred HHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH-HhhcccCchhHHhhcCChHHHHHH------------HHHhhCch
Q 040949 173 IFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI-GSIVITETPTSLIERGNEVAGHKA------------LKKIRGVE 239 (490)
Q Consensus 173 ~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~~~~~a~~~------------~~~~~~~~ 239 (490)
..+||.+ +....++.+||+.|++...+.++.++ ..+++||+|+.. +++.+..... ++...+..
T Consensus 144 ~~~gp~l--gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~ 219 (495)
T PRK14995 144 AAFGPLV--GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGF 219 (495)
T ss_pred HHHHHHH--HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccC
Confidence 9999999 45555678999999998877666544 345577765321 1111111000 00000000
Q ss_pred hhHHHHHH--------HHHHHHHHhhcccch--HHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCc
Q 040949 240 DVNAEYEQ--------IKLASDIARQVKHPF--KELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKND 308 (490)
Q Consensus 240 ~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 308 (490)
........ .......+.+.+.+. .+++|++. +....+..+...........+.|.+++. +|+++.
T Consensus 220 ~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~ 295 (495)
T PRK14995 220 LSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRI----ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPL 295 (495)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 00000000 000000111112221 24455433 3333333333333455667788888876 599999
Q ss_pred hhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHH
Q 040949 309 ASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMA 388 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (490)
+++....+..++..++.++.|++.||+|+|+.+..+..+..++...+.... ...+.+.......+.+.+
T Consensus 296 ~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~l~G~g 364 (495)
T PRK14995 296 EAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD-----------FSTQQWQAWGLMALLGFS 364 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888777776666555443311 112233334445555555
Q ss_pred hhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040949 389 FAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
.+....+ ......+..|++.++.+.++.++...+|+.+++.+.+.+.+.
T Consensus 365 ~g~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 365 AASALLA-STSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHH-HHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333 344456788999999999999999999999999999998764
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=270.25 Aligned_cols=342 Identities=13% Similarity=0.106 Sum_probs=247.4
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+...+
T Consensus 31 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 110 (377)
T TIGR00890 31 RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYG 110 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhh-cccCchhHHhhc
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSI-VITETPTSLIER 222 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~ 222 (490)
.....+.|++| |+|+++.++...+.++|..+++++.. ...+..+||+.|++.+++.++..+..+ +++|+|+. ..+
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 186 (377)
T TIGR00890 111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLIT--SVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ-LIK 186 (377)
T ss_pred hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchh-ccc
Confidence 88889999997 67999999999999999887665532 233456899999999988777655544 44444321 000
Q ss_pred CChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 040949 223 GNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (490)
++.+ .++.+.+.++.++++. .+...+..+...........+.+.+.++
T Consensus 187 ~~~~----------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (377)
T TIGR00890 187 TNIE----------------------------VSVKDYTVWEMLRTPQ----FWVLYLSFFLNAVSGLLLIGLYKPYGQS 234 (377)
T ss_pred cCcc----------------------------cchhhhhHHHHHcCcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 0000 0000112233444332 2222222232222333444555667777
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLV 382 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (490)
.|.+..+.+.......++.++++++.+++.||++||+.+..+..+..++.+.+... +...........
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 302 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI------------PMLNDVLFLATV 302 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc------------ccchhHHHHHHH
Confidence 88888888888999999999999999999999999998887777766665544331 111112222222
Q ss_pred HHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHH
Q 040949 383 CLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVM 454 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (490)
.+.+...+. ..+....+..|.+|+++|+++.|+.+....++..++|.+.|.+.+..++...+...+++.+.
T Consensus 303 ~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 303 ALVFFTWGG-TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHHHHhcc-chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 333333332 23344556789999999999999999999999999999999999988866555554444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=271.38 Aligned_cols=385 Identities=17% Similarity=0.215 Sum_probs=267.5
Q ss_pred chHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 040949 12 TVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVA 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~ 91 (490)
+++.+.....+.+..+..+++....+... |.+ .+++|.+..+.+++.+.+.++..+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAA--PAI-----------------SAEWGLDPVQLGFLFSAGLIGMAFGALFF 72 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhH--HHH-----------------hhccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566677777666554332 222 23358899999999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHH
Q 040949 92 SKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI 171 (490)
Q Consensus 92 G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 171 (490)
|+++||+|||+.+..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+
T Consensus 73 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 152 (398)
T TIGR00895 73 GPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI 152 (398)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHH-HHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHH
Q 040949 172 GIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFL-FIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKL 250 (490)
Q Consensus 172 G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 250 (490)
|..+++.++ ....+..+||+.+++.++..++. .+...++||++++...+ +.++..+..++.......+.+. +..+
T Consensus 153 g~~~~~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 228 (398)
T TIGR00895 153 GAAVGGFLA--GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPE 228 (398)
T ss_pred HHHHHHHHH--HHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-cccc
Confidence 999999984 44445679999999987655554 44556689988765544 3333333333222111000000 0000
Q ss_pred HHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhh
Q 040949 251 ASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIY 330 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 330 (490)
+.++++..+...+..++++.. +..+...+..+...........+.|.+.++.|.+..+.+.......++.+++.++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (398)
T TIGR00895 229 QKATQGTKRSVFKALFQGKTA-RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307 (398)
T ss_pred cccccchhhHHHHHHhcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111112223332222 2233333333444445566777888788888999999999999999999999999999
Q ss_pred hhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccch
Q 040949 331 AVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETR 410 (490)
Q Consensus 331 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 410 (490)
+.||+++|+... ...+..+...++... ..+.+......++.+.+.+.. .+...++..|.+|++.|
T Consensus 308 l~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 372 (398)
T TIGR00895 308 LADRLGPRVTAL-LLLLGAVFAVLVGST-------------LFSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIR 372 (398)
T ss_pred HHhhcchHHHHH-HHHHHHHHHHHHHHH-------------hhCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHH
Confidence 999999884433 333333322222210 112233334444444444433 45556778999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH
Q 040949 411 TAGFAFAVSSNMFFTFLIAQAFLSM 435 (490)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (490)
+++.|+.+....++..++|.+.|.+
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999998875
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=275.06 Aligned_cols=421 Identities=11% Similarity=0.055 Sum_probs=274.1
Q ss_pred cchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhh-----hhhhhcccccccccCCCchHHHHHHHHHHHHHH
Q 040949 11 ITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPE-----VYKRKLHAREDNYCKYDNQILQLFTSSLYLAAL 85 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 85 (490)
..+.++.+..++.++......|...++...+ ...++-.+. ...++.....+.+++++..+.|++.+.+.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMV--AMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEE--EcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence 4455677777777777777777777665432 222110000 000011111233789999999999999999999
Q ss_pred HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHh
Q 040949 86 FASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA--LNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNI 163 (490)
Q Consensus 86 i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 163 (490)
+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999887654 568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC-CchHHHHHhhHHHHHHHHHHhhc-ccCchhHHhhcCChHHHHHHHHHhhCchhh
Q 040949 164 LFQLFVTIGIFLANLVNYGTAKLHP-HGWRVSLALAGVPAIFLFIGSIV-ITETPTSLIERGNEVAGHKALKKIRGVEDV 241 (490)
Q Consensus 164 ~~~~~~~~G~~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~a~~~~~~~~~~~~~ 241 (490)
+...+..+|.+++++++. ...+. .+||+.|++.+++.++..+.++. .+|+|+.... .+++|. +..+
T Consensus 171 ~~~~~~~~g~~i~~~l~~--~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~-~~i~-------- 238 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISG--WLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC-ISKFEK-KYIN-------- 238 (465)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-CCHHHH-HHHH--------
Confidence 999999999999999954 34445 49999999999888777555544 5666642111 111110 0000
Q ss_pred HHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHH
Q 040949 242 NAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTV 320 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 320 (490)
+..++++++.+.+.++++++++ +.++...+..++.......+..|+|.++++ .|++..+.++..+...++
T Consensus 239 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~ 309 (465)
T TIGR00894 239 -----SSLQGQKGSTRQSLPIKAIPKS----LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309 (465)
T ss_pred -----hhcccccCCCCCCCCHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence 0000000011123346666554 556666777777777778888999999865 599999999999999999
Q ss_pred HHHHHHhhhhhhcccCchHHHH---HhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccc
Q 040949 321 NVLSTLVSIYAVDKVGRRKLLL---QACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLG 397 (490)
Q Consensus 321 ~~~~~~~~g~l~d~~g~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (490)
.+++.++.|+++||+++|+... .......++............. ........+.++.+.+.+.+ ...+..
T Consensus 310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~-~~~~~~ 382 (465)
T TIGR00894 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY------LSAAFYLTIIILTLANAVSS-GPLAGV 382 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH------cCCchHHHHHHHHHHHHHhh-hhhhhh
Confidence 9999999999999876442110 0011111111111100000000 11122222333333333222 222333
Q ss_pred cccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh--h-hHHHHHHHHHHHHHHHHHHhhc
Q 040949 398 WLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM--R-AYIFFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 398 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 462 (490)
.....|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. + +...+.+.++..+.+.+.....
T Consensus 383 ~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 383 LINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 344456666 48999999999999999999999999887653 2 3333444444444444444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=261.75 Aligned_cols=339 Identities=13% Similarity=0.069 Sum_probs=238.1
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+++|+|.++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|++.|++.+...+
T Consensus 31 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~ 110 (382)
T PRK10091 31 HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFG 110 (382)
T ss_pred HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhc
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIER 222 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~ 222 (490)
...+++.|++++++|++++++...+..+|..+++.++ ....+..+||+.|++.++..++..+. ..++||.++ +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~--~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~ 184 (382)
T PRK10091 111 VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLG--TYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----E 184 (382)
T ss_pred HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHH--HHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----c
Confidence 9999999999999999999999999999999999984 34445579999999988877665443 445777541 0
Q ss_pred CChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-
Q 040949 223 GNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ- 301 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 301 (490)
.+.+ . +..+ +.++++ + .+......+...........+.+.+++
T Consensus 185 ~~~~--------------~-----------------~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (382)
T PRK10091 185 AKGG--------------L-----------------REQF-HFLRSP---A-PWLIFAATMFGNAGVFAWFSYIKPYMMF 228 (382)
T ss_pred cccC--------------H-----------------HHHH-HHhcCh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0001 112221 1 222222222222222333344455554
Q ss_pred HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 302 TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 302 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
..|+++.+.+.......++.++++++.+++.||+++|+.+..+..+..++.+++... .+..+.....
T Consensus 229 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~ 295 (382)
T PRK10091 229 ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-------------GGMKTASLIF 295 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHH
Confidence 469999999999999999999999999999999999998887777666665444321 1122222333
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh-hhHHHHHHHHHHHHHHHHHH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM-RAYIFFFFAGWILVMGLFAL 459 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 459 (490)
..+...+......+.......+..|++.++.+ ..+....+|..++|.+.|.+.|.. ++...+...++..++.+...
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 296 AFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 33333333222233333334455555555554 346778899999999999999964 45444444444444443333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=264.97 Aligned_cols=343 Identities=16% Similarity=0.154 Sum_probs=241.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA--------LNIWMLIIGRILLGI 136 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~ 136 (490)
++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.++ .+++.+++.|+++|+
T Consensus 45 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (399)
T PRK05122 45 QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI 124 (399)
T ss_pred hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh
Confidence 458899999999999999999999999999999999999999999988877766553 257789999999999
Q ss_pred hhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 137 GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
+.+...+...+++.|++|+++|++++++...+..+|.++++.++ ....+..|||..+++.++..++..+.....|+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (399)
T PRK05122 125 GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG--VLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVP 202 (399)
T ss_pred hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH--HHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999984 3444557999998877666554433333233322
Q ss_pred hHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhH
Q 040949 217 TSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYA 296 (490)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+ ++++ +.+.++.+++. +.......+ ....+.....+.
T Consensus 203 ~---~~~~----------------------------------~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~ 239 (399)
T PRK05122 203 P---VKGE----------------------------------RLPFRRVLGRV--WPYGMGLAL----ASIGFGTIATFI 239 (399)
T ss_pred C---CCcc----------------------------------chhHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHH
Confidence 1 0000 00011111110 011111111 112234455667
Q ss_pred HHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhH
Q 040949 297 PVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAG 376 (490)
Q Consensus 297 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (490)
|.+.++.|++ +.+.......++.+++.++.+++.||+++|+.+..+..+..++...+... ++.+
T Consensus 240 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 303 (399)
T PRK05122 240 TLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--------------PSPW 303 (399)
T ss_pred HHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--------------ccHH
Confidence 7777776663 44566677788889999999999999999998877777666665544331 2233
Q ss_pred HHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Q 040949 377 FVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGL 456 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (490)
.......+.+.+.+.. .+.......|..|++.|+++.|+.+....++..+++.+.|.+.+..++...+...+++.+.++
T Consensus 304 ~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 382 (399)
T PRK05122 304 MALIGAALTGFGFSLV-FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGL 382 (399)
T ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 3334444444444433 333334456889999999999999999999999999999999998886655555555555555
Q ss_pred HHHhhcccCCCCC
Q 040949 457 FALFLLPETKGVP 469 (490)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (490)
+.....+++++++
T Consensus 383 ~~~~~~~~~~~~~ 395 (399)
T PRK05122 383 ALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHhccccccc
Confidence 5555555544443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=269.41 Aligned_cols=368 Identities=14% Similarity=0.131 Sum_probs=256.4
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+++|+|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++.|++.+...+
T Consensus 22 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 101 (399)
T TIGR00893 22 EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFP 101 (399)
T ss_pred HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhh
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHh-hcccCchhHHhhc
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGS-IVITETPTSLIER 222 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~ 222 (490)
...+++.|++|+++|++++++.....++|..+++.++. ...+..+||+.|++.+++.++..+.. .+.||+|+... +
T Consensus 102 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 178 (399)
T TIGR00893 102 GIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG--WILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-W 178 (399)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH--HHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccc-c
Confidence 99999999999999999999999999999999999954 33455789999999888877665444 44666553110 0
Q ss_pred CChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 040949 223 GNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (490)
.++++..+..++... + .+..+++++.+.+.++.+++ +.++...+..+...........+.|.++++
T Consensus 179 ~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (399)
T TIGR00893 179 LTEEEKYIVVGGLLA---------E-QQGKGPSTPKKYQIKELLKD----RRVWGLALGQFLVNIGLGFFLTWFPTYLVQ 244 (399)
T ss_pred CCHHHHhhcchhhcc---------c-cccccccCCCccchHHHhcC----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 011110000000000 0 00001111122334444443 345555555555566667778888888865
Q ss_pred -cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHH-hhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 303 -VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQ-ACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 303 -~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
.|.++.+.+.......++.+++.++.+++.||++||+.... ......++.+........ . ..........
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~ 316 (399)
T TIGR00893 245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA-T-------NYVNIPYAAL 316 (399)
T ss_pred HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH-h-------ccchhHHHHH
Confidence 58998899999999999999999999999999999862111 111111111111111100 0 1011122222
Q ss_pred HHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMGLF 457 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 457 (490)
........ ..+..+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.+..+ +...+...++..+.+.+
T Consensus 317 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 317 ALVALGFF-GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGAL 393 (399)
T ss_pred HHHHHHHh-chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHH
Confidence 22222222 223466777888999999999999999999999999999999999999877 55444444444443333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=269.62 Aligned_cols=391 Identities=20% Similarity=0.222 Sum_probs=280.4
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+.++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.+....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcC
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERG 223 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~ 223 (490)
....++.|++++++|+.+..+ ......+..++++.+..... +||+.+++..++.++.++..++.||+|||+..++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 999999999999999999999 55555666666655333322 8999999999999888777666779999999999
Q ss_pred ChHHHHHHHHHhhCch----hhHHHHHHH-HHHHH--HHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhH
Q 040949 224 NEVAGHKALKKIRGVE----DVNAEYEQI-KLASD--IARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYA 296 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~----~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+.+++.+.+++..+.+ +.++..+.. ..... ...+.+..+.++++.+..++......+..+.....+++.
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl---- 341 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGL---- 341 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhh----
Confidence 9999999999876543 111111111 11111 111223457777776544444444444443222222221
Q ss_pred HHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhH
Q 040949 297 PVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAG 376 (490)
Q Consensus 297 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (490)
+......|. +........+..........+...|+.|||.....+..+..++++...+... ....+
T Consensus 342 ~~~~~~lg~---~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 407 (521)
T KOG0255|consen 342 SLNVSGLGG---NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD-----------DLGGW 407 (521)
T ss_pred hhhhhhcCc---hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc-----------cchhH
Confidence 122222332 2344455555677788888889999999999999999888888887776532 11111
Q ss_pred HHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Q 040949 377 FVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGL 456 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (490)
.......+..++.+.++... +.+..|++|+..|..+.+..+....++++++|.+..............+++....+.+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 408 LHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 23333333333334344433 77789999999999999999999999999999887655442222222224556666666
Q ss_pred HHHhhcccCCCCChHHHHHHHh
Q 040949 457 FALFLLPETKGVPIDVMVERVW 478 (490)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~ 478 (490)
+...++||++++.+.+..++.+
T Consensus 487 ~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 487 LSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHhcCcccCCCCCchhHHHHH
Confidence 7778999999998877634433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=270.02 Aligned_cols=356 Identities=14% Similarity=0.048 Sum_probs=259.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSG-----ALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~ 141 (490)
+.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|++.|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999999999999999988888777665542 567899999999999999988
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhh
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIE 221 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~ 221 (490)
.+...+++.|++|+++|+++.++.....++|..+||.++... .+..+||+.|++.++..++..+..+.+||+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 202 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL--IAAGGVAWNYGLAAAGTFITLLPLLRLPALPPP--- 202 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC---
Confidence 899999999999999999999999999999999999995433 334589999998887777666666667776421
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ 301 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
+++.++ +. ++.+..++..++++. +....+..+... .......+.|.+.+
T Consensus 203 ~~~~~~----------------~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~p~~~~ 251 (417)
T PRK10489 203 PQPREH----------------PL----------RSLLAGFRFLLASPV----VGGIALLGGLLT-MASAVRVLYPALAD 251 (417)
T ss_pred Cccccc----------------ch----------HHHHHHHHHHHcChH----HHHHHHHHHHHH-HHHhHHHhhHHHHH
Confidence 000000 00 000111223333322 211111111111 12345667888888
Q ss_pred H-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 302 T-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 302 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
+ .|.++...+.......++.+++.++.+++.||.++++.+..+..+..++.+++.. .++.+....
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 317 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL--------------MPMWILAVL 317 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc--------------cchHHHHHH
Confidence 7 6999999999999999999999999999999977777777666666555444332 122233333
Q ss_pred HHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH-HHHHHHHHHHHHHHHHH
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY-IFFFFAGWILVMGLFAL 459 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 459 (490)
...+.+.+.+ ...+...+++.|..|++.||++.|+.+....++..+++.+.|.+.+..+.. .+...+.+..+.+++..
T Consensus 318 ~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 396 (417)
T PRK10489 318 CLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLL 396 (417)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 3333433332 223444567789999999999999999999999999999999999988754 44555666666677777
Q ss_pred hhcccCCCCChHHH
Q 040949 460 FLLPETKGVPIDVM 473 (490)
Q Consensus 460 ~~~~~~~~~~~~~~ 473 (490)
...+++|+++.+|.
T Consensus 397 ~~~~~~~~~~~~~~ 410 (417)
T PRK10489 397 LVLGELRRFRQTPP 410 (417)
T ss_pred Hhcccccccccccc
Confidence 77888888777776
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=259.00 Aligned_cols=373 Identities=10% Similarity=0.071 Sum_probs=261.1
Q ss_pred HHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 040949 17 VCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKVCT 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d 96 (490)
.+...++++.+..+.+....+... |++ .+++|+|.++.+++.+.+.+++.+++++.|++.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~--~~i-----------------~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d 67 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVM--GPI-----------------AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME 67 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--HHH-----------------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777777766665443 333 3345889999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHH
Q 040949 97 KFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLA 176 (490)
Q Consensus 97 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 176 (490)
|+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+...++|..++
T Consensus 68 r~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 147 (394)
T PRK03699 68 IIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF 147 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHh
Q 040949 177 NLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIAR 256 (490)
Q Consensus 177 ~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (490)
|.+.... ..+..+||+.|.+.+++.++..+..++ ++.|+. ++++. +
T Consensus 148 ~~~~~~l-~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~------------------------------~ 193 (394)
T PRK03699 148 PIIAAYL-LARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP------------------------------K 193 (394)
T ss_pred HHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc------------------------------c
Confidence 8874332 223469999999888877665444333 222310 00000 0
Q ss_pred hcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc
Q 040949 257 QVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV 335 (490)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 335 (490)
+.+.. .+. .+++.++...+..++.......+..|.|.++++ .|+++.+++...+...++..+++++.++++||+
T Consensus 194 ~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 268 (394)
T PRK03699 194 ADKPV----AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF 268 (394)
T ss_pred ccCcc----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 011 112334444444444445556778899999955 599999999999999999999999999999999
Q ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHH
Q 040949 336 GRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFA 415 (490)
Q Consensus 336 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 415 (490)
++|+.+.....+..+...++.. . ++.+.......+.+...+ ...+.......|..| +.+++..+
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g 332 (394)
T PRK03699 269 DLQRILTVLAGLALVLMYLFVN-------------T-DDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVN 332 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-------------c-CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHH
Confidence 9998887665554443333221 1 122222233333333322 223343444556665 44577788
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 040949 416 FAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLP 463 (490)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (490)
.......+|..++|.+.|.+.+..++...+....++.+++.+.....+
T Consensus 333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 888899999999999999999988865444444344444433344333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=258.33 Aligned_cols=378 Identities=13% Similarity=0.060 Sum_probs=266.9
Q ss_pred chHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 040949 12 TVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVA 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~ 91 (490)
+++.++...++.++.+...++...+.+.. |.+.+ ++|+|..+.++..+.+.+++.+++++.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~-----------------~~~~s~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGM--LAVVE-----------------DFNAGAEWVPTSMTAYLAGGMFLQWLL 68 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcch--HHHHH-----------------HhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777666665442 33333 348899999999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHH
Q 040949 92 SKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI 171 (490)
Q Consensus 92 G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 171 (490)
|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+
T Consensus 69 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
T PRK15402 69 GPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALL 148 (406)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999988889
Q ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHH
Q 040949 172 GIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKL 250 (490)
Q Consensus 172 G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 250 (490)
|..++|.++. ...+..+||+.|++.++..++..+. ....||+++.. ++++ +.
T Consensus 149 ~~~~g~~i~~--~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------~~----- 201 (406)
T PRK15402 149 APLLGPLVGA--ALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKL-----------------SL----- 201 (406)
T ss_pred HHHHHHHHHH--HHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccc-----------------cH-----
Confidence 9999999843 3344579999999988877766544 34467764210 0000 00
Q ss_pred HHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhh
Q 040949 251 ASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSI 329 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g 329 (490)
++...++++.++++. ++...+..+...........+.|.+++ ..|+++.+.+.......++.+++.++.+
T Consensus 202 -----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g 272 (406)
T PRK15402 202 -----KELGRDYKLVLKNRR----FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLA 272 (406)
T ss_pred -----HHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112334444432 333333322222223344556677764 4699988888887777788899999999
Q ss_pred hhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccc
Q 040949 330 YAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLET 409 (490)
Q Consensus 330 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 409 (490)
++.||+++|+....+..+..++...+...... ...+.++......+.+.+.+... +...... ...+++.
T Consensus 273 ~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~-~~~~~~~ 341 (406)
T PRK15402 273 RLTSRRPLRSLIRMGLWPMVAGLLLAALATVI---------SSHAYLWLTAGLSLYAFGIGLAN-AGLYRLT-LFSSDVS 341 (406)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc---------ccccHHHHHHHHHHHHHHHHHHh-hhHHHHH-hhhcccc
Confidence 99999999998888777666666555442210 11223333344444444444332 2222222 2334588
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHH
Q 040949 410 RTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMG 455 (490)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (490)
+|++.+..+....++..+++.+.+.+.+..+.........++.+..
T Consensus 342 ~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 342 KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988777554444444444433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=256.05 Aligned_cols=334 Identities=12% Similarity=0.075 Sum_probs=233.4
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHh---h-----hhhHHHHHHHHHHhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS---G-----ALNIWMLIIGRILLGI 136 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~l~~~r~l~G~ 136 (490)
++|+|..++|++.+++.+++.++++++|+++||+|||+++..+.+...++.+... + .++++.+++.|+++|+
T Consensus 45 ~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 45 DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999999999999999888776654332 1 3588999999999999
Q ss_pred hhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 137 GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
+.+...+...+++.|++|+|+|++++++.+.+.+.|..++|+++. ...+..|||+.+.+..+..++........||++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL--LLHSHFGFAALALTTMVLPLLAWAFNGTVRKVP 202 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH--HHHhccChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999943 334557899887766554443333222233332
Q ss_pred hHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhH
Q 040949 217 TSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYA 296 (490)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+ +++. +.+.++..+.... +... ..+ ..........+.
T Consensus 203 ~----~~~~---------------------------------~~~~~~~~~~~~~-~~~~-~~l----~~~~~~~~~~~~ 239 (392)
T PRK12382 203 A----HAGE---------------------------------RPSLWSVVGLIWK-PGLG-LAL----QGVGFAVIGTFV 239 (392)
T ss_pred C----Cccc---------------------------------CchHHHHHHHHHH-hHHH-HHH----HHHHHhHHHHHH
Confidence 1 0000 0001111111000 1111 111 112234455677
Q ss_pred HHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhH
Q 040949 297 PVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAG 376 (490)
Q Consensus 297 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (490)
|.++++.|++. .+.......++.+++++..|++.||+++|+.+..+..+..++..++.. . ++.+
T Consensus 240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~ 303 (392)
T PRK12382 240 SLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL-------------A-PTAW 303 (392)
T ss_pred HHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH-------------c-ccHH
Confidence 77777777653 455666677788889999999999999999888777766666554432 1 1223
Q ss_pred HHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Q 040949 377 FVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGL 456 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (490)
.......+.+.+.+.. .+.......|.+|+++|+++.|+.+....++..++|.+.|.+.++.++...+...+.+.+.+.
T Consensus 304 ~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 382 (392)
T PRK12382 304 VALAGAALTGAGCSLI-FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGI 382 (392)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3333444444443322 334445557889999999999999999999999999999999998887655555555555444
Q ss_pred HHHh
Q 040949 457 FALF 460 (490)
Q Consensus 457 ~~~~ 460 (490)
+...
T Consensus 383 ~~~~ 386 (392)
T PRK12382 383 IVTI 386 (392)
T ss_pred HHHH
Confidence 4433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=264.34 Aligned_cols=356 Identities=12% Similarity=0.047 Sum_probs=225.6
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|++.|++.+...
T Consensus 64 ~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~- 142 (476)
T PLN00028 64 DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV- 142 (476)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhc-------ccCCCchHHHHHhhHHHHHHHHHHhhcccC-c
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTA-------KLHPHGWRVSLALAGVPAIFLFIGSIVITE-T 215 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~-------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-s 215 (490)
....++.|++|+++|++++++.....++|..+++.+..... ..+..|||+.|++.+++.++..+..+++++ .
T Consensus 143 ~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~ 222 (476)
T PLN00028 143 SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL 222 (476)
T ss_pred HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 45678999999999999999998777777777765532211 111258999999999888776655555443 3
Q ss_pred hhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 216 PTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 216 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
|+ ++.++. ++ .. ..++++....+++.++++. .+...+..+...........+
T Consensus 223 p~-----~~~~~~----~~---~~------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 274 (476)
T PLN00028 223 PD-----GNYREL----KK---SG------------TMPKDSFSKVLRYGVTNYR----TWILALTYGYSFGVELTMDNI 274 (476)
T ss_pred CC-----CchhhH----Hh---cC------------ccccccHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHhH
Confidence 31 100000 00 00 0000000112333333322 333333333333334456667
Q ss_pred HHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchH----HHHHhhHHHHHHHHHHHHHHHHhhccccCcc
Q 040949 296 APVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRK----LLLQACVQMFISQSTIGGMLLVHLKATSNTL 370 (490)
Q Consensus 296 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (490)
.|.++.+ .|++..+++...+...++.++++++.|+++||++||+ ..........+..+......
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~----------- 343 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG----------- 343 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-----------
Confidence 7888754 5999999999999999999999999999999998752 11111111111111111110
Q ss_pred cchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHH
Q 040949 371 TTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGW 450 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (490)
...+.+.....+.++..+.... .+..+.+..+..| +.+|++.|+.+..+.+|+.+++.+.+. .+..++...+.+.++
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~-~~~~~y~~~f~~~~~ 420 (476)
T PLN00028 344 RANSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFT-GSSYSTETGISLMGV 420 (476)
T ss_pred ccchHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHh-cCCccHhhHHHHHHH
Confidence 1112222233333333332222 2234455566554 789999999988887888777766541 112234333444444
Q ss_pred HHHHHHHHHhhc
Q 040949 451 ILVMGLFALFLL 462 (490)
Q Consensus 451 ~~~~~~~~~~~~ 462 (490)
+.+++.++.++.
T Consensus 421 ~~~i~~~~~~~~ 432 (476)
T PLN00028 421 MIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHHHhe
Confidence 444444444444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=250.22 Aligned_cols=346 Identities=13% Similarity=0.049 Sum_probs=241.8
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA-----LNIWMLIIGRILLGIGVG 139 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~ 139 (490)
++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.++..+++ ++++.+++.|++.|++ +
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 579999999999999999999999999999999999999999999999999999987 8999999999999998 6
Q ss_pred hhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhc-----c-----------cCCCchHHHHHhhHHHHH
Q 040949 140 FGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTA-----K-----------LHPHGWRVSLALAGVPAI 203 (490)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~-----~-----------~~~~~wr~~f~~~~~~~~ 203 (490)
..++.....+++|+|+++||+++++.....++|..+++.+..... . .+..+||...++.+++.+
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i 222 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA 222 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence 688999999999999999999999997666666665544432111 0 013458999888888777
Q ss_pred HHHHHhhc-ccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHH
Q 040949 204 FLFIGSIV-ITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQV 282 (490)
Q Consensus 204 ~~~~~~~~-~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (490)
+..++.++ .++.|. ++.......+.+|+ +..|.+.+.+
T Consensus 223 v~~i~~~~~~~~~~~-------------------------------------~~~~~~~~~~vlk~----~~~Wllslly 261 (462)
T PRK15034 223 IATIAAWSGMNDIAS-------------------------------------SRASIADQLPVLQR----LHLWLLSLLY 261 (462)
T ss_pred HHHHHHHHhCCCccc-------------------------------------cccCHHHHHHHhCC----CchhHHHHHH
Confidence 66555544 333321 00011123344554 3366777777
Q ss_pred HHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHh
Q 040949 283 FQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362 (490)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 362 (490)
++.+..+.++..++|++.++ .++............+...+.++++|+++||+|+++.+..+...+.++.........
T Consensus 262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp-- 338 (462)
T PRK15034 262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP-- 338 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 88888888899899999866 333333333344456778888999999999999999998888777666544332210
Q ss_pred hccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCc---------------------cchhhHHHHHHHHH
Q 040949 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPL---------------------ETRTAGFAFAVSSN 421 (490)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~~~~~~~~ 421 (490)
.. ...+.+.............+.+ +...+-++.+.+|+ ++.|.+.|+....+
T Consensus 339 ~~------~~~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G 411 (462)
T PRK15034 339 GT------GSGNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIG 411 (462)
T ss_pred cc------cccHHHHHHHHHHHHHHHhccc-chHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHH
Confidence 00 0112222222222222333333 22334455666764 15678999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhhH--HHHHHHHHHHHHHHHHHhhc
Q 040949 422 MFFTFLIAQAFLSMMCHMRAY--IFFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 462 (490)
.+|+++.|.++|...+..+.+ .+..+.+...++.++.+...
T Consensus 412 ~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 412 AVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887733 34444444444444444443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=259.68 Aligned_cols=380 Identities=13% Similarity=0.098 Sum_probs=260.6
Q ss_pred HHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 040949 21 LAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGR 100 (490)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr 100 (490)
+++++.++..++...+++. +|.+.+ ++|.|..+.+++.+.+.++..++.+++|+++||+||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~--~p~~~~-----------------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTA--LPSMAQ-----------------SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHHhHHHHHHH--HHHHHH-----------------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3345566677777665543 333333 248899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHH
Q 040949 101 KPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVN 180 (490)
Q Consensus 101 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 180 (490)
|++++.+..+.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHhcccCCCchHHHHHhhHHHHHHHHHHh-hcccCchhHHhhcCChHHHHHHHHH---------hhCchh---hHHHHHH
Q 040949 181 YGTAKLHPHGWRVSLALAGVPAIFLFIGS-IVITETPTSLIERGNEVAGHKALKK---------IRGVED---VNAEYEQ 247 (490)
Q Consensus 181 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~a~~~~~~---------~~~~~~---~~~~~~~ 247 (490)
....+..+||+.|++......+..+.. ...|+++. .+.|.+........ ..+... .......
T Consensus 155 --g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471)
T PRK10504 155 --GLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAG 229 (471)
T ss_pred --HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHH
Confidence 444456799999999877666554443 33454431 11222221110000 000000 0000000
Q ss_pred -----------HHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHH
Q 040949 248 -----------IKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSV 315 (490)
Q Consensus 248 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 315 (490)
...+++..++...+. +++|++. +.......++..........+.|++++. .|.++.++++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 230 LVAVGVVALLLYLLHARNNNRALFSL-KLFRTRT----FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 000000001111122 3455543 2333333333333445666778888875 6999999999988
Q ss_pred HHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccc
Q 040949 316 ITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGP 395 (490)
Q Consensus 316 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (490)
...++.+++.++.+++.||+++|+.+..+..+..+...++.... ...+.+.......+.+.+.+.. .+
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~-~~ 372 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA-----------LLGWYYLLPFVLFLQGMVNSTR-FS 372 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc-----------ccccHHHHHHHHHHHHHHHHHH-HH
Confidence 88888888889999999999999999888776766655544311 1112222222233333333322 22
Q ss_pred cccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 040949 396 LGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRA 441 (490)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (490)
.......+..|++.++++.|+.++...+|..+++.+.|.+.+..++
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345567889999999999999999999999999999999887654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=264.57 Aligned_cols=355 Identities=12% Similarity=0.099 Sum_probs=238.5
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLII-GRILLGIGVGFG 141 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~ 141 (490)
.+++|+|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|+++|++.+..
T Consensus 46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~ 125 (455)
T TIGR00892 46 QQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFN 125 (455)
T ss_pred HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhh
Confidence 3445889999999999999999999999999999999999999999999999999999999998875 579999999987
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc-cCchhHHh
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI-TETPTSLI 220 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~ 220 (490)
.+...+++.++++ ++|+++.++.+.+..+|..++|+++ ....+..|||+.|++.+++.++..+..+++ ++.+..
T Consensus 126 ~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~--~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~-- 200 (455)
T TIGR00892 126 FQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLN--QYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ-- 200 (455)
T ss_pred hhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 7788888999996 7899999999999999999999984 334445799999999988877654444333 322210
Q ss_pred hcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHH
Q 040949 221 ERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF 300 (490)
Q Consensus 221 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
.+.+.++ . +........++. + .....++..+..+ .+.+++ +.++......+...........++|.+.
T Consensus 201 ~~~~~~~-~---~~~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 268 (455)
T TIGR00892 201 RVSKSKS-K---EGLPPDGSTKKL-S--KKSTAEKINRFLD-FSLFTH----RGFLVYLSGNVIMFLGFFAPIIFLVPYA 268 (455)
T ss_pred ccccccc-c---ccCCCCCccccc-c--ccchhhhhhhhcc-hHHhcC----chHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 0000000 0 000000000000 0 0000000000001 123333 3344444444444445566667888888
Q ss_pred HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc--CchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHH
Q 040949 301 QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV--GRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFV 378 (490)
Q Consensus 301 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
++.|++..+++...+..+++.++++++.+++.||. ++|+...........+...+... ..++.+..
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~------------~~~~~~~~ 336 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA------------LAGDYTGL 336 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH------------HhchHHHH
Confidence 88899999999999999999999999999999973 33433332222221111111111 11233333
Q ss_pred HHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHH
Q 040949 379 VFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFF 447 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 447 (490)
+....+.+.+.+ ...+.....+.|.+|++.++++.|+.+....++.+++|.+.|.+.+..+ +...+..
T Consensus 337 ~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 337 VIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA 405 (455)
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence 444444444443 2344556667799999999999999999999999999999999998775 4333333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=261.07 Aligned_cols=372 Identities=13% Similarity=0.070 Sum_probs=244.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA----LNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~ 142 (490)
|+|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+...
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 7899999999999999999999999999999999999999999999998887764 467788899999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHH-HHhhcccCchhHHhh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLF-IGSIVITETPTSLIE 221 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~esp~~~~~ 221 (490)
+.....+.|++|+++|++++++.+.+.++|..+++.+..... ....+||+.|++.+++.++.. +..+++||+|+....
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM-AWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 999999999999999999999999999999999887743222 223589999999888877754 445567887753211
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccch-HHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPF-KELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF 300 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
++..++ ++ +...+..+ +.+.+.+.++.. +..+++ +.++...+..++.....+....|.|.++
T Consensus 216 ~~~~~~-~~-----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~l 278 (438)
T TIGR00712 216 PPIEEY-RN-----DYPDDYNE-------KAEQELTAKEIFMQYVLPN----KLLWYIAIANVFVYLLRYGVLDWSPTYL 278 (438)
T ss_pred CCchhc-cc-----cccccccc-------ccccccchHHHHHHHHccC----chHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 110000 00 00000000 000000000111 123343 3344444444444444567778999999
Q ss_pred HHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHH
Q 040949 301 QTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVV 379 (490)
Q Consensus 301 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (490)
++. |+++.+++....+..+.+++++++.|++.||+++++....+................ . +..+.+...
T Consensus 279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~ 349 (438)
T TIGR00712 279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM---N------PAGNPLVDM 349 (438)
T ss_pred HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh---c------CCCchHHHH
Confidence 874 999999999999999999999999999999996443222222222221111111110 0 111222222
Q ss_pred HHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHH-HHHHHHhHHHHHhhhhHHHH-HHHHHHHHHHHH
Q 040949 380 FLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT-FLIAQAFLSMMCHMRAYIFF-FFAGWILVMGLF 457 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 457 (490)
......+.+. .+..........|.+|++.|+++.|+.+....+++ .++|.+.|.+.|+.++...+ +..++.++..+.
T Consensus 350 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 428 (438)
T TIGR00712 350 ICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 428 (438)
T ss_pred HHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 2222222211 11111112345799999999999999999888875 68999999999988755444 344444455555
Q ss_pred HHhhcccCC
Q 040949 458 ALFLLPETK 466 (490)
Q Consensus 458 ~~~~~~~~~ 466 (490)
....++|+|
T Consensus 429 ~~~~~~~~~ 437 (438)
T TIGR00712 429 LIVVMIGEK 437 (438)
T ss_pred HHHHHhhcc
Confidence 555666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=251.24 Aligned_cols=350 Identities=12% Similarity=0.052 Sum_probs=236.2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS---G-ALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~~~~ 141 (490)
+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++++++. + .++++.+++.|++.|++.+..
T Consensus 43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~ 122 (402)
T TIGR00897 43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLF 122 (402)
T ss_pred hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHH
Confidence 378999999999999999999999999999999999999999999998877653 3 357888999999999999988
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHH-HHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHH
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGI-FLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSL 219 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~ 219 (490)
.+...+.+.+++|+++|++++++.+.+.++|. +++|.++ ....+..||+..+|......++..+. .++.++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 199 (402)
T TIGR00897 123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS--SYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP- 199 (402)
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCc-
Confidence 88888899999999999999999999999997 5788884 34445567766655444333332222 2334443210
Q ss_pred hhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHH
Q 040949 220 IERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVL 299 (490)
Q Consensus 220 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
+++++++ +. ++.+..++++++++ .++...+..++..........+.|.+
T Consensus 200 -~~~~~~~----------------~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 200 -QHMQTRE----------------KF----------SELGKAATILFTNP----NVLLGGMVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred -ccccCCc----------------ch----------hhHHHHHHHHHcCh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 00011233444442 34444444445555567778899999
Q ss_pred HHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHH-hhHHHHHHHHHHHHHHHHhhccccCcccchhhHHH
Q 040949 300 FQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQ-ACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFV 378 (490)
Q Consensus 300 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
.++.|++..+.+.......++.+++.+..|+++||++||+.... +.....++...+..... . ..++.+..
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~--~-------~~~~~~~~ 319 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ--H-------FGHSFAVA 319 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH--c-------cCCcHHHH
Confidence 98899999998888888899999999999999999998887642 22222222222221100 0 01122333
Q ss_pred HHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 040949 379 VFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFA 458 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (490)
.....+.+.+... ..+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...+...+++.+++.+.
T Consensus 320 ~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 320 LIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 3333344433332 23332 34456555 689999999999999999999999999999888655444444444444443
Q ss_pred Hhh
Q 040949 459 LFL 461 (490)
Q Consensus 459 ~~~ 461 (490)
..+
T Consensus 397 ~~~ 399 (402)
T TIGR00897 397 TAF 399 (402)
T ss_pred HHH
Confidence 333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=262.40 Aligned_cols=384 Identities=15% Similarity=0.099 Sum_probs=269.3
Q ss_pred HHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 040949 19 WILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKF 98 (490)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~ 98 (490)
...++++.++..+|..+.+... |.+ .+++|.|.++.+++.+.+.++..++.++.|+++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--p~~-----------------~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 64 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAI--PTI-----------------AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF 64 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4455667788888887766443 233 233478999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHH
Q 040949 99 GRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANL 178 (490)
Q Consensus 99 Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 178 (490)
|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.
T Consensus 65 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 144 (485)
T TIGR00711 65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHH------------HHHhhCchhhHH-H
Q 040949 179 VNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKA------------LKKIRGVEDVNA-E 244 (490)
Q Consensus 179 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~------------~~~~~~~~~~~~-~ 244 (490)
+ .....++.+||+.|++.+.+.++..+. .++.||+++. .+++.+..... ..+..+.+..+. +
T Consensus 145 ~--~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (485)
T TIGR00711 145 L--GGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE 220 (485)
T ss_pred c--HhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence 9 445556789999999988877666444 3446665421 11111111000 001000000000 0
Q ss_pred HH-HH-------HHHHHHHhhcccc--hHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHH
Q 040949 245 YE-QI-------KLASDIARQVKHP--FKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLS 313 (490)
Q Consensus 245 ~~-~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 313 (490)
.. .. ......+.+.+++ ..+.++++.. +...+..+...........+.|.++++ .|+++.+++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~ 296 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNF----TIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLH 296 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 00 00 0000001111111 1234444332 222333333334455667788988876 49999999999
Q ss_pred HHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccc
Q 040949 314 SVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSW 393 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (490)
.....++.+++.++.|++.||++||+.+..+..+.+++...+..... +....+.......+.+.+.+...
T Consensus 297 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 297 ILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----------PDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877766666555442110 11222333333444444444333
Q ss_pred cccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 394 GPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
.+.. ....+..|++.++++.|+.+....+|+.+++.+.+.+.++..
T Consensus 367 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 367 MPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 334577899999999999999999999999999999987643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=254.57 Aligned_cols=327 Identities=13% Similarity=0.059 Sum_probs=243.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL-----NIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~ 141 (490)
+.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++.+ +++.+++.|++.|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999888888 9999999999999999999
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc--cCchhHH
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI--TETPTSL 219 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~esp~~~ 219 (490)
.+...+++.|++|+++|++++++.+.+..+|.+++|.++. ...+..+||+.|++.++..++..+..+.+ ||+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 185 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG--LMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-- 185 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC--
Confidence 9999999999999999999999999999999999999954 33445689999998877666554443333 33221
Q ss_pred hhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHH-HhHHH
Q 040949 220 IERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIM-FYAPV 298 (490)
Q Consensus 220 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 298 (490)
+++++. ++ +..++.+..+++.++++. ++...+..+.......... .+.|.
T Consensus 186 --~~~~~~--------------~~---------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (365)
T TIGR00900 186 --SEIQAL--------------SN---------AVLRDTREGIKFVLKNPL----LRTLLLLALLFNLVFAPAIVALFPY 236 (365)
T ss_pred --cccccc--------------ch---------hHHHHHHhHHHHHHcCcH----HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 000000 00 000011122344444433 2222222222222233333 67788
Q ss_pred HHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHH
Q 040949 299 LFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGF 377 (490)
Q Consensus 299 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (490)
+.++ .|.+..+.+.......++.+++.++.+++.||.+||+....+..+.+++...+... .++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 303 (365)
T TIGR00900 237 VQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-------------PPNFPL 303 (365)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-------------chhHHH
Confidence 8876 69999999999999999999999999999999999998877665555554444331 112333
Q ss_pred HHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 378 VVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
..+...+.+.+.+. ..+....+..|..|++.|+++.|+.+....++..++|.+.|.+.|..|
T Consensus 304 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 304 FLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444443 345556777899999999999999999999999999999999988653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=249.16 Aligned_cols=339 Identities=12% Similarity=0.125 Sum_probs=234.2
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+++|.|..+.++..+++.+++.++++++|+++||+|||+++..+.++++++++++++++|++.++++|+++|++.+...+
T Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~ 123 (413)
T PRK15403 44 RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIAT 123 (413)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhc
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIER 222 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~ 222 (490)
...+++.|++|+++|++++++......+|..+||.++... .+..|||+.|++.++..++..+. .+++||+++. +
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l--~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~ 198 (413)
T PRK15403 124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL--MHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---G 198 (413)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---c
Confidence 7888999999999999999999999999999999995443 34579999999998887776544 4457887521 0
Q ss_pred CChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 040949 223 GNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (490)
++..+ .++..+++++++++ +.++...+..+........+..+.|.++++
T Consensus 199 ~~~~~---------------------------~~~~~~~~~~ll~~----~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~ 247 (413)
T PRK15403 199 AVPFS---------------------------AKSVLRDFRNVFRN----RLFLTGAATLSLSYIPMMSWVAVSPVILID 247 (413)
T ss_pred CCCCC---------------------------hHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 00000 00001123445554 334444444444444556667778988876
Q ss_pred c-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 303 V-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 303 ~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
. |+++.+.++.......+..++..+.+++.++..+++.......+..++..++...... ..+..+.....
T Consensus 248 ~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~---------~~~~~~~~~~~ 318 (413)
T PRK15403 248 AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL---------WPHVWLWSVLG 318 (413)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH---------ccccHHHHHHH
Confidence 5 9999999998887888888888888776655444444333323333333222221100 11122223344
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAG 449 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (490)
.++++.+.+... |...... ..-.+..+|++.++.+.....+...++...+++.+......+.....
T Consensus 319 ~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 384 (413)
T PRK15403 319 TSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAV 384 (413)
T ss_pred HHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 444555544332 2222111 11122347999999999999999999999998877644444444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=250.42 Aligned_cols=325 Identities=14% Similarity=0.148 Sum_probs=236.7
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+.
T Consensus 34 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 113 (385)
T TIGR00710 34 DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVI 113 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcC
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERG 223 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~ 223 (490)
..+++.|++|+++|++++++.+....+|..+++.++. ...+..+||+.|++.++..++..+. .++.||+++. ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 188 (385)
T TIGR00710 114 SQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG--YILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY---EA 188 (385)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---cc
Confidence 9999999999999999999999999999999999854 4444579999999988877666444 3456765421 00
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-H
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-T 302 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 302 (490)
+. + . ++...++++.++++.. +...+..............+.|.+++ +
T Consensus 189 ~~-~-------------~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (385)
T TIGR00710 189 RI-Q-------------I--------------STYFETFLLLLKSKMF----WGYALIYGASFGGFFAFFSGAPFVYIDI 236 (385)
T ss_pred cC-C-------------H--------------HHHHHHHHHHHcCchh----HHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 00 0 0 0001123344444332 22222222223334556667787775 5
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLV 382 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (490)
.|.++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++...+...... ............
T Consensus 237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 307 (385)
T TIGR00710 237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL---------GLGSWAMIIGPM 307 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh---------ccchHHHHHHHH
Confidence 69999999999999999999999999999999999998887776666665554432210 001122222223
Q ss_pred HHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040949 383 CLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC 437 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (490)
.+.+.+.+.. .+.......|..| +.++++.++.+.....++.+.+++.+...+
T Consensus 308 ~~~g~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 308 MFVGIGNSMI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333322 3344455567776 678999999998888777777777774443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=255.19 Aligned_cols=363 Identities=15% Similarity=0.207 Sum_probs=268.1
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL--NIWMLIIGRILLGIGVGF 140 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 140 (490)
+.++++|.++.|++.+.+++|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457999999999999999999999999999999999999999999999999999999875 456789999999999999
Q ss_pred hhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhh-cccCchhHH
Q 040949 141 GNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSI-VITETPTSL 219 (490)
Q Consensus 141 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~ 219 (490)
.+|+...+.++|.|++||++..++..++..+|.+++.++++.+-.. ..||+++|++.+..+++..++++ +..|+|...
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h 223 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH 223 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999885433322 38999999999999999876654 466777421
Q ss_pred hhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHh---hcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhH
Q 040949 220 IERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIAR---QVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYA 296 (490)
Q Consensus 220 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
++. .++|.+.+.+...+++ +.+.|+++++++ +.+|...+..++...+...+..|.
T Consensus 224 ---~~i---------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 224 ---PNI---------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred ---CCC---------------CHHHHHHHHhcccccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1112222222211111 146789999887 668889999999999999999999
Q ss_pred HHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCch--------HH-HHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 297 PVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRR--------KL-LLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 297 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
|.|+++. |++..+.|+..++..+...+..+++|.++||+.+| |. -.++....++.++.+.+.
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-------- 353 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-------- 353 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec--------
Confidence 9999876 99999999999999999999999999999987552 22 223333333333333321
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh---hhhHH
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH---MRAYI 443 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 443 (490)
...+.+..+.++.+.....+...... ..-..+. .+++.+..+|+.+....+.++++|.+.+.+... ..|..
T Consensus 354 ----~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 354 ----SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred ----CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 22233333333333333222221111 1111222 457889999999999999999999999999842 23554
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 040949 444 FFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (490)
.+...+...+++.+.+.+.
T Consensus 428 VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHhchheeEe
Confidence 4544444444444444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=245.24 Aligned_cols=354 Identities=13% Similarity=0.097 Sum_probs=244.5
Q ss_pred HHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchh
Q 040949 23 AFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKP 102 (490)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~ 102 (490)
.++.++.+.+.+..++.. |.+.+ ++|.|..++|++.+.+.++..+++++.|+++||+|||+
T Consensus 12 ~~~~~~~~~~~~~~~~~l--p~~~~-----------------~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~ 72 (381)
T PRK03633 12 LCGLLLLTLAIAVLNTLV--PLWLA-----------------QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR 72 (381)
T ss_pred HHHHHHHHHhhhhHHHHH--HHHHH-----------------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355566667766665443 23332 34889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHH
Q 040949 103 TILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYG 182 (490)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 182 (490)
++..+.++.+++..++++++|++.++++|+++|++.+...+...+.+.+..++++|+++++....+.++|..+|+.++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 73 SYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999888888899999999999999999999999999999533
Q ss_pred hcccCCCchHHHHHhhHHHHHHHHHHhh-cccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccc
Q 040949 183 TAKLHPHGWRVSLALAGVPAIFLFIGSI-VITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHP 261 (490)
Q Consensus 183 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (490)
..+...|+. .+..+......+...+ ..+|+++ + ++++.+
T Consensus 153 --l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~-------------------------------~~~~~~ 192 (381)
T PRK03633 153 --VSTELMSVL-PWVTGLVLAAILPLLFTRILNQQA------E-------------------------------NHDSTS 192 (381)
T ss_pred --ccccccchH-HHHHHHHHHHHHHHHHhcccCCCC------C-------------------------------CCCCCC
Confidence 333222222 2222222221111111 1222110 0 000122
Q ss_pred hHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHH
Q 040949 262 FKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLL 341 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 341 (490)
..+.++++..+. .....+.....+.....+.|.+.++.|.++.+.+.......++.+++++..+++.||+++|+.+
T Consensus 193 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l 268 (381)
T PRK03633 193 IWPMLKLRQARL----GVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL 268 (381)
T ss_pred HHHHHHhcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH
Confidence 334444433221 1111111122234455678989988899998999888888899999999999999999999988
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHH
Q 040949 342 LQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSN 421 (490)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 421 (490)
..+.....++...+.. ... ......+.+.+.. ...|.....+.|..|+++++...+..+...
T Consensus 269 ~~~~~~~~~~~~~~~~--------------~~~---~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (381)
T PRK03633 269 RVQVFVVILGSIAMLS--------------QAA---MAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSY 330 (381)
T ss_pred HHHHHHHHHHHHHHhh--------------hHH---HHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 7776666655443321 011 1112222222222 334555666678888888888888888888
Q ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 040949 422 MFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLF 457 (490)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (490)
.+|..++|.+.|.+.|+.++...+...+.+.+...+
T Consensus 331 ~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 331 TVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 999999999999999988865554444444444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=262.64 Aligned_cols=350 Identities=13% Similarity=0.077 Sum_probs=240.6
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|+|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+.
T Consensus 24 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 103 (379)
T TIGR00881 24 EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPP 103 (379)
T ss_pred HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCc
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHH-HHHHhcccCCCchHHHHHhhHHHHHHHH-HHhhcccCchhHHhhc
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANL-VNYGTAKLHPHGWRVSLALAGVPAIFLF-IGSIVITETPTSLIER 222 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~esp~~~~~~ 222 (490)
..+++.|++|+++|++++++.+.+..+|..+++. ++ ....+..+||+.|++.+++.++.. +..++.||+|+....+
T Consensus 104 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (379)
T TIGR00881 104 CGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVL--FGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLP 181 (379)
T ss_pred hHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHH--HHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccC
Confidence 9999999999999999999999999999999994 53 223345799999998887776654 4445577766421111
Q ss_pred CChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 040949 223 GNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (490)
+++++. .++.+++. ++.+++.+..+...++.+++ +.++...+..+...........+.|.++++
T Consensus 182 ~~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
T TIGR00881 182 PAEEMP---------NEEPDGDA---EKKEEELTKKQIFLQYVLLN----KVLWYISLGYVFVYVVRTGILDWSPLYLTQ 245 (379)
T ss_pred ccccCc---------cccccccc---ccccccccchHHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 00000000 00000000111123334444 334444444444444556677788888865
Q ss_pred -cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 303 -VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 303 -~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
.|+++.+.+.......++.+++.++.+++.||..+|+...............+..... . ...+.......
T Consensus 246 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~ 316 (379)
T TIGR00881 246 EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL---N------PAANPLMDLIC 316 (379)
T ss_pred HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc---C------cchhHHHHHHH
Confidence 5999999999999999999999999999999864332222221111111111111100 0 11122222222
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
..+.+.. ..+..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.+..++.
T Consensus 317 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 317 LFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 2222222 22223344456789999999999999999999999999999999999987753
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=250.13 Aligned_cols=336 Identities=14% Similarity=0.063 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Q 040949 72 ILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSE 151 (490)
Q Consensus 72 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 151 (490)
..|++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++.++++.+++.|++.|++.+ ..+....++.|
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 133 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT 133 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999865 56778888999
Q ss_pred cCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHH
Q 040949 152 IAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHK 230 (490)
Q Consensus 152 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~ 230 (490)
++|+++|++++++...+..+|..++|.++. ...+..+||+.|++.+++.++..+. .+++||+++.. ++. +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~--- 204 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGG--LLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKK-E--- 204 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cch-h---
Confidence 999999999999999999999999999954 3444568999999988877665444 34456543110 000 0
Q ss_pred HHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCch-
Q 040949 231 ALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDA- 309 (490)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 309 (490)
. .+. .+..+.++++.. ........+...........+.+.+.++.+.+..+
T Consensus 205 --------------~-------~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (408)
T PRK09874 205 --------------M-------LHM----REVVTSLKNPKL---VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNI 256 (408)
T ss_pred --------------h-------hHH----HHHHHhCcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 0 000 001122232221 12111111111122234445566666655333222
Q ss_pred ---hHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHH
Q 040949 310 ---SLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFV 386 (490)
Q Consensus 310 ---~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (490)
.+......+++.+++.+..|++.||++||+.+..+..+..++.+.... ..+.+...+...+.+
T Consensus 257 ~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g 322 (408)
T PRK09874 257 AFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF--------------VQTPLQLGILRFLLG 322 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH--------------hccHHHHHHHHHHHH
Confidence 344555667778888888999999999999888776655554443322 122333333333444
Q ss_pred HHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 040949 387 MAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALF 460 (490)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (490)
.+.+. ..+.......+..|++.+|+..++.+....+|..++|.+.|.+.+..++...+...+++.+.+.+...
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 323 AADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 44332 23444455567888899999999999999999999999999999888866555555554444444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-30 Score=246.96 Aligned_cols=325 Identities=17% Similarity=0.160 Sum_probs=236.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|.|+++.+++.+++.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+.
T Consensus 35 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 114 (401)
T PRK11043 35 DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVI 114 (401)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHH
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCC
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGN 224 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 224 (490)
..+++.|+++++++++..+.......+|..++|.++ ....+..+||+.|++.+++.++..+..++++|+++. ++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 188 (401)
T PRK11043 115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLG--AWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RK 188 (401)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc
Confidence 889999999999999999999999999999999984 344455799999999888877766555556655420 00
Q ss_pred hHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcC
Q 040949 225 EVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVG 304 (490)
Q Consensus 225 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 304 (490)
. ++.+.++++.++++..+. ..+........+.....+.|.+.++.|
T Consensus 189 ~------------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~g 234 (401)
T PRK11043 189 Q------------------------------SQDALTFKQLLKSKTYLG----NVLIFAACSAAFFAWLTGSPFILEQMG 234 (401)
T ss_pred c------------------------------chHHHHHHHHHcChhHHH----HHHHHHHHHHHHHHHHHHhHHHHHHcC
Confidence 0 000112334444332211 111122222234455667888888889
Q ss_pred CCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHH
Q 040949 305 FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCL 384 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (490)
+++.+.+.......++.+++.+..+++.||+++|+.........+++...+...... .....+.......+
T Consensus 235 ~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 305 (401)
T PRK11043 235 YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL---------SHPSLVPLLIPFCV 305 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh---------ccCcHHHHHHHHHH
Confidence 999999988888888889999999999999999887766555554444333222110 11222222333333
Q ss_pred HHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 385 FVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
.+.+.+. ..+.......|..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 306 ~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 306 MAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 3443332 23444444456666 579999999999999999999999998877543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=251.80 Aligned_cols=339 Identities=19% Similarity=0.254 Sum_probs=236.8
Q ss_pred CCchHHHHHHHH-----HHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHh
Q 040949 68 YDNQILQLFTSS-----LYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIW--------MLIIGRILL 134 (490)
Q Consensus 68 ~s~~~~g~~~s~-----~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~ 134 (490)
.++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 345566655543 3334457899999999999999999999999999999999998875 488899999
Q ss_pred hhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc------cCCCchHHHHHhhHHHHHHHHHH
Q 040949 135 GIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK------LHPHGWRVSLALAGVPAIFLFIG 208 (490)
Q Consensus 135 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~ 208 (490)
|++.+...+...+++.|++|+++|++..++...+..+|.++++.++..... .+..+||+.|++.+++.++....
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987533221 13468999999887776665555
Q ss_pred hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhc
Q 040949 209 SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTG 288 (490)
Q Consensus 209 ~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (490)
....||+|++..+++ ++++.+.+.++.++++. +.++......+.....
T Consensus 187 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQE------------------------------KHKKKRGPIRETLTKHR--KPFLLGLGLVIATTTT 234 (394)
T ss_pred HHhcCCChhHHHHHh------------------------------ccccccCCHHHHHHhch--HHHHHHHHHHHHHHHH
Confidence 556677663211100 01111234445554422 2233333334444445
Q ss_pred hhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 289 INAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 289 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
......+.|.+.+ +.|.++.+.+.......++.+++.++.+++.||++||+.+.....+..+..........
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------- 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------- 307 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 5667778888884 56899999999888899999999999999999999999776554444333221111110
Q ss_pred CcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHH-HHHHHHHHHHHHHhHHHHHhhh-hHHHH
Q 040949 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAV-SSNMFFTFLIAQAFLSMMCHMR-AYIFF 445 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 445 (490)
...+.+.......+.+.+.+. ..+....+..|.+|++.|+++.++.+ ....++..++|.+.|.+.++.+ +....
T Consensus 308 ---~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 308 ---DSGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred ---cCCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 112233333333334433332 34455677789999999999999854 4456788899999999999887 44444
Q ss_pred HHHH
Q 040949 446 FFAG 449 (490)
Q Consensus 446 ~~~~ 449 (490)
....
T Consensus 384 ~~~~ 387 (394)
T TIGR00883 384 YYLA 387 (394)
T ss_pred HHHH
Confidence 4433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=235.19 Aligned_cols=349 Identities=15% Similarity=0.139 Sum_probs=263.8
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNI---WMLIIGRILLGIGVG 139 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~l~~~r~l~G~~~~ 139 (490)
++++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..+++++..+-++..+++.+. +++++++++.|++.+
T Consensus 41 ~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga 120 (417)
T COG2223 41 KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120 (417)
T ss_pred ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc
Confidence 46789999999999999999999999999999999999999999999999999999998544 599999999999855
Q ss_pred hhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCc---hHHHHHhhHHHHHHHHHH-hhcccCc
Q 040949 140 FGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHG---WRVSLALAGVPAIFLFIG-SIVITET 215 (490)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~---wr~~f~~~~~~~~~~~~~-~~~~~es 215 (490)
.+.....++++|+|++++|.++|+.. ..|+|..+...++.... ...+ ||....+..+..++..+. ++...|.
T Consensus 121 -sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~--~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 121 -SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA--VAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred -eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999 88888887777643332 2245 999999888877776554 4456666
Q ss_pred hhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcc-cchHHhcccCCCchHHHHHHHHHHHHhhchhhHHH
Q 040949 216 PTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVK-HPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMF 294 (490)
Q Consensus 216 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
|..... .++.. .+++.+.++ +..|.+.+.++..+.++.++..
T Consensus 197 p~~r~~---------------------------------~~~~~~~~~~~v~~~----~~~W~lsllY~~tFG~Fvgfs~ 239 (417)
T COG2223 197 PEHRAS---------------------------------VKPQLPAQLKAVFSN----KDTWLLSLLYFATFGGFVGFSA 239 (417)
T ss_pred hhhhcc---------------------------------ccccchhHHHHHhcC----cchHHHHHHHHHHHHHHHHHHH
Confidence 621000 00001 223444444 5578888888888999999999
Q ss_pred hHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccch
Q 040949 295 YAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTT 373 (490)
Q Consensus 295 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (490)
++|.++++ +|.++.+++.......+.+.+.++++|+++||+|.+|........++++..+......... ...
T Consensus 240 ~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~-------~~~ 312 (417)
T COG2223 240 YLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG-------HGG 312 (417)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc-------cCc
Confidence 99999965 5999999999999999999999999999999999999999888888888777765321000 012
Q ss_pred hhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hH-HHHHHHHHH
Q 040949 374 QAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AY-IFFFFAGWI 451 (490)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 451 (490)
+...............+.+ +...+-+++..+|+ +.|.+.|+....+.+|++.-|..++...+..+ +. .++.+..+.
T Consensus 313 ~~~~~~~~~l~l~~~~G~G-nGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~ 390 (417)
T COG2223 313 SFVVFVAVFLALFVFAGLG-NGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFY 390 (417)
T ss_pred chHHHHHHHHHHHHHhccC-cchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHH
Confidence 2222233233333333333 33445666777774 66899999999999999999999999999988 33 444444444
Q ss_pred HHHHHHHHhh
Q 040949 452 LVMGLFALFL 461 (490)
Q Consensus 452 ~~~~~~~~~~ 461 (490)
+++.++....
T Consensus 391 ~~a~v~~~~~ 400 (417)
T COG2223 391 LVALVLTWAL 400 (417)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=250.02 Aligned_cols=370 Identities=18% Similarity=0.221 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 040949 14 YVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASK 93 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~ 93 (490)
..++.+.+.++.+.+...|...+..+. + +.+++||++++..|++++.+.+.+.+++|++|+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~--------------~-----~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gy 90 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVL--------------K-----EVQTYFNISDSELGLLQTVFIVVFMIASPLFGY 90 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhh--------------H-----HHHHhcCCCchhccchhHHHHHHHHHHHHHHHH
Confidence 345666677777888888877765433 1 236678999999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHH
Q 040949 94 VCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGI 173 (490)
Q Consensus 94 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 173 (490)
++|||.||+++..|..+|.++.++++++..||+++++|.+.|+|.+...|.++++++|.+|.++|++++++++.+.++|.
T Consensus 91 LadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 91 LADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred HHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCC-CchHHHHHhhHHHHHHHHHHh-hcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHH
Q 040949 174 FLANLVNYGTAKLHP-HGWRVSLALAGVPAIFLFIGS-IVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLA 251 (490)
Q Consensus 174 ~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 251 (490)
.+|.+.+ ....+. ..|||.|+..++++++..++. ++.+|.+|. ..++. +++
T Consensus 171 glG~vvg--s~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~~~------------- 223 (493)
T KOG1330|consen 171 GLGYVVG--SVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------DGE------------- 223 (493)
T ss_pred ceeEEee--eeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc-------ccC-------------
Confidence 9999884 333333 339999999999999886654 456665421 11000 000
Q ss_pred HHHHhhcccchHH---hcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHH----HHcCCCCchhHHHHHHHhHHHHHH
Q 040949 252 SDIARQVKHPFKE---LMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF----QTVGFKNDASLLSSVITGTVNVLS 324 (490)
Q Consensus 252 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~ 324 (490)
.+..++....++| ..+.+...-..+......+. ...+..|.|.+. +-.|++..+..+...+...++.+|
T Consensus 224 ~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lG 299 (493)
T KOG1330|consen 224 NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLG 299 (493)
T ss_pred CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHh----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhh
Confidence 0000111112222 22322222223333333333 344445555444 334777777777888888999999
Q ss_pred HHhhhhhhcccCch----HHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccccc
Q 040949 325 TLVSIYAVDKVGRR----KLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLI 400 (490)
Q Consensus 325 ~~~~g~l~d~~g~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
.+.+|.++||+.++ .......+..+.+.......+...... .....+..+++..+........+. ...-+
T Consensus 300 vl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~-----~~~s~~~~~il~~~g~~~~~~~~a-~n~~i 373 (493)
T KOG1330|consen 300 VLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF-----TSSSMIFGLILFLVGETISWFNWA-TNNPI 373 (493)
T ss_pred heehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHhcccc-cccce
Confidence 99999999994321 122222222222211111110000000 122222222222222222222333 33444
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHHH-HHHhHHHHHhh
Q 040949 401 PSETFPLETRTAGFAFAVSSNMFFTFLI-AQAFLSMMCHM 439 (490)
Q Consensus 401 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 439 (490)
..|++|++.|.++.++...+..+.+-.+ |++.|.+.|+.
T Consensus 374 ~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 374 FLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred eeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 5799999999999999888776655544 44999998865
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-30 Score=245.04 Aligned_cols=344 Identities=13% Similarity=0.146 Sum_probs=238.6
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTIL-VASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
+++|.|..+.|++.+.+.++..+.+++.|+++||+||||.++ .+..+..++.++++++++++.+++.|++.|.+.+...
T Consensus 26 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 105 (375)
T TIGR00899 26 EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTAN 105 (375)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhH
Confidence 345889999999999999999999999999999999988765 4566667778888999999999999999998888888
Q ss_pred hhHHHHhhhcCCCCccchH--HhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHH
Q 040949 143 EAVPLFLSEIAPVQHRGAV--NILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSL 219 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~ 219 (490)
|...++..|+.|+++|++. .+....+.++|.+++|.++. ...+..+||+.|++.++..++..+. .+++||+|++.
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~--~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
T TIGR00899 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF--WLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA 183 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH--HHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc
Confidence 8888999999887777754 57888888999999999843 4445579999999998877766544 44578876321
Q ss_pred hhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHH
Q 040949 220 IERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVL 299 (490)
Q Consensus 220 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
.+++ .+.+.++.++++..+....... ...........+.|.+
T Consensus 184 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 225 (375)
T TIGR00899 184 PGAL----------------------------------TRLEVRGLLASRDTRLLFVACT----LMWGCNILYIINMPLL 225 (375)
T ss_pred cccc----------------------------------CcchhhhhhcCcchHHHHHHHH----HHHHHHHHHHhhhHHH
Confidence 0000 0001122333322222222111 1111223344556777
Q ss_pred H-HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHH
Q 040949 300 F-QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFV 378 (490)
Q Consensus 300 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
+ ++.|.++.+.+..........+++.++.+++.||+++|+.+..+..+..+....+.. .++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 291 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA--------------DNSLWAL 291 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 6 456999988888877777777888899999999999999887665544333322221 1222333
Q ss_pred HHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 040949 379 VFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFA 458 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (490)
.....+.+.+.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..++...+...+++.+.+.+.
T Consensus 292 ~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 292 LMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 33333333333322 34445566788875 56799999999999999999999999999887665555555555555555
Q ss_pred Hhhcc
Q 040949 459 LFLLP 463 (490)
Q Consensus 459 ~~~~~ 463 (490)
..+++
T Consensus 370 ~~~~~ 374 (375)
T TIGR00899 370 LLLIK 374 (375)
T ss_pred Hheec
Confidence 55443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=251.90 Aligned_cols=325 Identities=21% Similarity=0.337 Sum_probs=239.3
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|++.|++.+...
T Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 24 AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence 44568899999999999999999999999999999999999999999999997777777888899999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIE 221 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~ 221 (490)
+...+++.|++|+++|++++++...+.++|.+++|.++ ....+..+||+.|++.+++.++..++ ..+++++|+....
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~--~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 181 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLG--GFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRER 181 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT-
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchh--hhhhhccccccccccccchhhhhhhhHhhhhhhccccccc
Confidence 99999999999999999999999999999999999994 44446679999999999988887654 3445554421111
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhccc-chHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKH-PFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF 300 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
+++.++. +++++... .++++++++..+ ......+...........+.|.++
T Consensus 182 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l 233 (352)
T PF07690_consen 182 ESPKESE------------------------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLPLYL 233 (352)
T ss_dssp -SSTTTT--------------------------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccc------------------------cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccchhh
Confidence 1111000 00111111 244455443332 222222222334456788888884
Q ss_pred -HHcCCC-CchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHH
Q 040949 301 -QTVGFK-NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFV 378 (490)
Q Consensus 301 -~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
+.+|++ ..+.+.......+..+++.++.+++.||+++|+..........+....+..... .++..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 302 (352)
T PF07690_consen 234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF-----------SSSPVWL 302 (352)
T ss_dssp CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH-----------HCHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHH
Confidence 666888 688888899999999999999999999999988777766666655555443221 1223334
Q ss_pred HHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHH
Q 040949 379 VFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIA 429 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 429 (490)
.....+.+.+.+ ...+....+..|..|++.+|++.|+.+....+++.++|
T Consensus 303 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 444444555444 33556677788999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=239.54 Aligned_cols=317 Identities=21% Similarity=0.273 Sum_probs=259.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+...+.++++.+++.|++.|++.+...+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 109 (352)
T cd06174 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAA 109 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChH
Q 040949 147 LFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEV 226 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 226 (490)
+++.|++|+|+|++.+++.....++|..+++.++. ...+..+||+.+++.++..++..+...+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 174 (352)
T cd06174 110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG--LLAESLGWRWLFLILAILGLLLALLLLFLL------------- 174 (352)
T ss_pred HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 99999999999999999999999999999999954 344456799999998887776655544331
Q ss_pred HHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc-CC
Q 040949 227 AGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GF 305 (490)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~ 305 (490)
+..+...+..+...........+.|.+.++. |.
T Consensus 175 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (352)
T cd06174 175 ----------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGL 208 (352)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence 2244444455555556677788888888776 99
Q ss_pred CCchhHHHHHHHhHHHHHHHHhhhhhhcccCchH-HHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHH
Q 040949 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRK-LLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCL 384 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (490)
+..+.+.......++..++.++.+++.||++||+ .+..+..+..++....... ++.+.......+
T Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~ 274 (352)
T cd06174 209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--------------PSLALLLVALLL 274 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999 8888777777776655531 123334444444
Q ss_pred HHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 040949 385 FVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFAL 459 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (490)
.+.+.+ ...+....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++...+....+..+.+.+..
T Consensus 275 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 275 LGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 444444 34566677889999999999999999999999999999999999987776655555555544444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=246.57 Aligned_cols=267 Identities=18% Similarity=0.202 Sum_probs=213.4
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+|.+....+.+.+.++++++++++.+++|.+.||++..+.+....+.+++-.++....+|++.+++.|++.|+.++..+
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 56678899999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc----cCCCchHHHHHhhHHHHHHHHH-HhhcccCchh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK----LHPHGWRVSLALAGVPAIFLFI-GSIVITETPT 217 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~ 217 (490)
|....+++.|+.+++|++.++++.+..++|.++|.+++++... ....||||.|++.+++.++..+ ..+++|+.|.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999999999999999999999999999999999887543 2237999999999999988755 4566999985
Q ss_pred --HHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 218 --SLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 218 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
|...+++++-..+..++.... ..+++.++..+++.+++ +..|.+.+..++.....+.+.+|
T Consensus 233 ~~~fl~~~ek~~~~~~~~~~~~~-------------~~~~~~~~~~~~~a~~d----p~vw~~~l~~~~~~lv~~~~~~~ 295 (495)
T KOG2533|consen 233 KAWFLTDEEKELVVERLRESPSG-------------GIENKFKWKGFKEALKD----PGVWPFSLCYFFLKLVNYGFSYW 295 (495)
T ss_pred hccccchHHHHHHHHHHHhccCC-------------CcccccCHHHHHHHHhc----hhHHHHHHHHHHHhhccccHHHH
Confidence 222222221111111110000 00001123345555555 55777888888888888999999
Q ss_pred HHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc----CchHHHHHhhH
Q 040949 296 APVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV----GRRKLLLQACV 346 (490)
Q Consensus 296 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~r~~~~~~~~ 346 (490)
+|.++++ .|++..++..+.++..++++++.+++|+++||. .+|........
T Consensus 296 lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~ 351 (495)
T KOG2533|consen 296 LPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC 351 (495)
T ss_pred HHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999988 479999999999999999999999999999994 44444443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=241.30 Aligned_cols=320 Identities=18% Similarity=0.169 Sum_probs=224.7
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|+|+++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+.
T Consensus 20 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 99 (377)
T PRK11102 20 DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVV 99 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH-HhhcccCchhHHhhcC
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI-GSIVITETPTSLIERG 223 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~ 223 (490)
..+++.|++|+++|++++++...+..+|..++|.++. ...+..+||+.|++.+++.++..+ ..++.||+++. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 174 (377)
T PRK11102 100 INALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG--WLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK---ER 174 (377)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---cc
Confidence 9999999999999999999999999999999999843 334456899999998887776644 34567776421 00
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-H
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-T 302 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 302 (490)
+. + .+. ++...++++.++++. .+...+..+...........+.|.+.. .
T Consensus 175 ~~-~-----------~~~--------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (377)
T PRK11102 175 RQ-P-----------FHL--------------RTTIRNFASLFRHKR----VLGYMLASGFSFAGMFSFLTAGPFVYIEL 224 (377)
T ss_pred cC-C-----------CCh--------------HHHHHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 00 0 000 000112333444422 222223333333334455556666664 4
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLV 382 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (490)
.|+++.+.+.......++.+++.++.+++.||+|+|+.+..+..+..+..+.+..... .....+......
T Consensus 225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 294 (377)
T PRK11102 225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL----------LDLGFWALVVGV 294 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHH
Confidence 6999999999999999999999999999999999999888777654443332222111 111222222233
Q ss_pred HHHHHHhhccccccccccccccCCccchhhHHHHHHHHHH-HHHHHHHHH
Q 040949 383 CLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM-FFTFLIAQA 431 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (490)
.+...+.... .+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 295 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 295 AAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222 2223344567666 788999998877654 444444444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=246.34 Aligned_cols=351 Identities=13% Similarity=0.103 Sum_probs=239.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh-----cchhH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKF-----GRKPT-ILVASSFFLAGAGISSGA---LNIWMLIIGRILLGIG 137 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 137 (490)
|.|.+++|.+ +.....+ ++.+++|+++||+ ||||. +..+.+..+++...+++. ++++.+.+.|++.|++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 7788889987 4444444 6899999999999 99885 667777777877777775 4788999999999999
Q ss_pred hhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccC-CCchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 138 VGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLH-PHGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
.+...+...+++.|++|+++|+++.++...+..+|.++++.++ ....+ ..|||..|++.+++.++..+..++.||++
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~--~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA--LWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999884 33344 36999999999888777666555678765
Q ss_pred hHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhH
Q 040949 217 TSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYA 296 (490)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+.. +++ + +. +++...++++.++++..+...... +...........+.
T Consensus 199 ~~~---~~~-~---------------~~----------~~~~~~~l~~~~~~~~~~~~ll~~----~l~~~~~~~~~~~~ 245 (491)
T PRK11010 199 DTI---PVP-K---------------TL----------EQAVVAPLRDFFGRNNAWLILLLI----VLYKLGDAFAMSLT 245 (491)
T ss_pred ccc---ccc-c---------------ch----------hhhHHHHHHHHHcCcCHHHHHHHH----HHHHHHHHHHHHHH
Confidence 210 000 0 00 000012344555433322212111 22222223334455
Q ss_pred HHHH-HHcCCCCchhHHHHH-HHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchh
Q 040949 297 PVLF-QTVGFKNDASLLSSV-ITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQ 374 (490)
Q Consensus 297 ~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (490)
+.++ ++.|++..+.+.... ...++.+++.+++|+++||+++|+.+..+..+.++..+.+..... ...+
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~----------~~~~ 315 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI----------TDKN 315 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----------cccc
Confidence 5555 567999999998874 555789999999999999999988777665554544433322111 1112
Q ss_pred hHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHH
Q 040949 375 AGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVM 454 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (490)
.+.......+.....+... +...++..+..+++.+++..|+.+....++..+++++.|.+.|..|+...+.+..++.+.
T Consensus 316 ~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~ 394 (491)
T PRK11010 316 LYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP 394 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2222222222121222121 223455678889889999999999999999999999999999988877767766666666
Q ss_pred HHHHHhhcccC
Q 040949 455 GLFALFLLPET 465 (490)
Q Consensus 455 ~~~~~~~~~~~ 465 (490)
+++.....+++
T Consensus 395 ~l~~~~~~~~~ 405 (491)
T PRK11010 395 GLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHhc
Confidence 66666555543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=239.84 Aligned_cols=320 Identities=13% Similarity=0.118 Sum_probs=230.7
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|+|..++|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|+++|++.+...+.
T Consensus 40 ~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 119 (400)
T PRK11646 40 QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPP 119 (400)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcC
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERG 223 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~ 223 (490)
..+++.|++|+++|++++++.....++|..+||.++.... ..+||+.|++.++..++..+. .++.||.+. +
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~---~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~ 191 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL---QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----S 191 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----c
Confidence 9999999999999999999999999999999999965444 369999999988776665433 344554210 0
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV 303 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (490)
+.+ ++.+.++++.++++.. +...+..+...........+.|.+.++.
T Consensus 192 ~~~-----------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (400)
T PRK11646 192 TVR-----------------------------TPVREGMTRVLRDKRF----VTYVLTLTGYYMLAVQVMLMLPIMVNDI 238 (400)
T ss_pred ccc-----------------------------hhhHHHHHHHHcCchH----HHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 000 0001123444444322 1121121221112223456788888887
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHhhhhhhc-ccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHH
Q 040949 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVD-KVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLV 382 (490)
Q Consensus 304 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (490)
+.++.+.+...+...+....+....+++.| |.+.++.+..+..+..++..++... ++.+......
T Consensus 239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~ 304 (400)
T PRK11646 239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--------------SNLQQLFTLI 304 (400)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHH
Confidence 667788888877777766655555565555 5665665656555555554433321 1223233333
Q ss_pred HHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 383 CLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
.+++.+.. ...|...+++.|..|++.||++.|+.+....++..++|.+.|.+.|..+
T Consensus 305 ~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 305 CLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 33444333 2344555677899999999999999999999999999999999998864
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=240.72 Aligned_cols=355 Identities=11% Similarity=0.077 Sum_probs=240.0
Q ss_pred HHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 040949 15 VVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKV 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l 94 (490)
.+.......+..++.+++....+... |.+ ++++|+|+.+.|+..+.+.+++.+++++.|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--p~i-----------------~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l 84 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILL--PQF-----------------QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455666666665544332 222 33458899999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHH
Q 040949 95 CTKFGRKPTILVASSFFLAGAGIS---SGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI 171 (490)
Q Consensus 95 ~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 171 (490)
.||+|||+++..+.++++++++++ .++++++.++++|+++|+|.|...+..++++.|+.++++|.+.+++.+....+
T Consensus 85 ~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~ 164 (438)
T PRK10133 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 999999999999999999999885 46889999999999999999999999999999988777777789999999999
Q ss_pred HHHHHHHHHHHhcc-c--------------CC---------CchHHHHHhhHHH-HHHHHHH-hhcccCchhHHhhcCCh
Q 040949 172 GIFLANLVNYGTAK-L--------------HP---------HGWRVSLALAGVP-AIFLFIG-SIVITETPTSLIERGNE 225 (490)
Q Consensus 172 G~~i~~~~~~~~~~-~--------------~~---------~~wr~~f~~~~~~-~~~~~~~-~~~~~esp~~~~~~~~~ 225 (490)
|..+++.++..... . +. .+||++|+....+ .++.++. ....||.+. +++.
T Consensus 165 G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~ 240 (438)
T PRK10133 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS 240 (438)
T ss_pred HHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccc
Confidence 99999988543220 0 00 2567777643333 2232222 223454321 0000
Q ss_pred HHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHH-HH-c
Q 040949 226 VAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF-QT-V 303 (490)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 303 (490)
+ ++..+...+.+++++++..+. ..+..++..........|.+.++ ++ .
T Consensus 241 ~--------------------------~~~~~~~~~~~~ll~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (438)
T PRK10133 241 D--------------------------AKQGSFSASLSRLARIRHWRW----AVLAQFCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_pred c--------------------------ccccchhhhHHHHHhCchHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 0 000001122344555433222 22222333334444555667664 44 5
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHH
Q 040949 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVC 383 (490)
Q Consensus 304 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (490)
|+++.+++.......++.++++++++++.||+++|+.+..+..+..+..+.... ... . .......
T Consensus 291 g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-------------~~~-~-~~~~~~~ 355 (438)
T PRK10133 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-------------AGG-H-VGLIALT 355 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-------------cCC-h-HHHHHHH
Confidence 999999999999999999999999999999999999887776655544433322 111 1 2233344
Q ss_pred HHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 384 LFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
+.+.+.+.. .|...+...|..|+ ..+++.++.. ....++.++|++.|.+.|..+
T Consensus 356 l~glg~~~i-~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 356 LCSAFMSIQ-YPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHHHHH-HHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 455554434 45556666777775 4677888775 455788999999999988876
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=240.63 Aligned_cols=329 Identities=9% Similarity=0.060 Sum_probs=234.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|+|..++|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++++.++++|++.|.+.+...+.
T Consensus 37 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 116 (395)
T PRK10054 37 QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTV 116 (395)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHh-hcccCchhHHhhcC
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGS-IVITETPTSLIERG 223 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~ 223 (490)
..++..|..|+++|++++++.....++|.+++|.++.... . .+||..|++.++..++..+.. +++||+++. +
T Consensus 117 ~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~--~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~- 189 (395)
T PRK10054 117 LKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV--M-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---I- 189 (395)
T ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-hccCcHHHHHHHHHHHHHHHHHHHHhccccc---c-
Confidence 9999999999999999999999999999999999965443 2 589999998887776654433 345554310 0
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH--
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-- 301 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 301 (490)
+.+ + + + ..+.++.++++..+.......+..+. ......+.+.+..
T Consensus 190 ~~~----------------~---------~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~ 236 (395)
T PRK10054 190 ATE----------------T---------G--S--VWSPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQYVMVV 236 (395)
T ss_pred ccc----------------h---------h--h--hhhhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHHHHHHh
Confidence 000 0 0 0 00113344444333322222222222 2222234444442
Q ss_pred -HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 302 -TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 302 -~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
+.+.+....+.................+++.||.++|+.+..+..+..++...+.. ..++.+...+
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 303 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF-------------SGNSLLLWGM 303 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH-------------cchHHHHHHH
Confidence 33555556667777776766777778899999999999888777666666554432 1122333333
Q ss_pred HHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHH
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFA 448 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (490)
...+++.+.. ...|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.++...+...
T Consensus 304 ~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 304 SAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 4444444433 224455566788899999999988654 67789999999999999999866554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=237.55 Aligned_cols=319 Identities=18% Similarity=0.215 Sum_probs=221.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
+|.|..+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++.++++++.+++.|+++|++.+...+..
T Consensus 33 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 112 (392)
T PRK10473 33 LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVA 112 (392)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCC
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGN 224 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~ 224 (490)
.+++.|++|+++|+++.++.+....+|..++|.++. ...+..+||+.|++.++..++..+. .+++||+++. +++
T Consensus 113 ~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~--~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~ 187 (392)
T PRK10473 113 FAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH--LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP 187 (392)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC
Confidence 999999999999999999999999999999999853 3334579999999988877666444 4556776421 000
Q ss_pred hHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-Hc
Q 040949 225 EVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TV 303 (490)
Q Consensus 225 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 303 (490)
.++ .. .+..++.++++. .+...+..............+.|.+.+ +.
T Consensus 188 ~~~---------------~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (392)
T PRK10473 188 AAS---------------SK--------------PRENSESLLNRF----FLSRLVITTLSVTVILTFVNTSPVLLMEQM 234 (392)
T ss_pred Ccc---------------ch--------------HHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHhCHHHHHHHc
Confidence 000 00 000112222221 111111111111122334455566664 56
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHH
Q 040949 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVC 383 (490)
Q Consensus 304 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (490)
|+++.+.+......+++.+++.++.+++.||+++|+.+..+..+..++.+.+.... ..+.......
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 300 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--------------SHAVSLFGIT 300 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 99988889888889999999999999999999999998888776666655554321 1122222233
Q ss_pred HHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 384 LFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
+...+.+.+... ....+..|.++|+ |.......++..+++.+.+.+.+..++.
T Consensus 301 l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 301 LICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred HHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333322221 2223455544443 3334445566677777777777776644
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=234.52 Aligned_cols=344 Identities=11% Similarity=0.101 Sum_probs=225.1
Q ss_pred ccccCCCchHHHHHHHHHHH-HHHHHHhhhhhhhhhhcchhHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYL-AALFASFVASKVCTKFGRKPTI-LVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGF 140 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 140 (490)
.+++|+|.+++|++.+...+ ++.++.++.|+ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+.
T Consensus 43 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 121 (393)
T PRK15011 43 TDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGST 121 (393)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34558899999999877655 55555655555 9999999875 556677678888888999999887766655555567
Q ss_pred hhhhHHHHhhhcCCCCccc--hHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchh
Q 040949 141 GNEAVPLFLSEIAPVQHRG--AVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPT 217 (490)
Q Consensus 141 ~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~ 217 (490)
..|...+++.|+.++++|. ...++.+.+.++|.+++|+++ ....++.|||..|++.++..++..+. ..++||+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~--~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 122 ANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA--YALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred hHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH--HHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 7888889999988766553 455788899999999999995 44445579999999988877766444 445787652
Q ss_pred HHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHH
Q 040949 218 SLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAP 297 (490)
Q Consensus 218 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
. ++.++ +..+ +..+++ +........ .............+.|
T Consensus 200 ~----~~~~~-----------------------------~~~~---~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~p 240 (393)
T PRK15011 200 E----LPLAT-----------------------------GTLE---APRRNR--RDTLLLFVI-CTLMWGTNSLYIINMP 240 (393)
T ss_pred C----Ccccc-----------------------------cccc---cccccc--ccHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 0 00000 0000 000111 111111111 1222223444556788
Q ss_pred HHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhH
Q 040949 298 VLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAG 376 (490)
Q Consensus 298 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (490)
.++++ .|+++.+.+.......++.+++.++.|+++||++||+.+..+.....+....... .++.+
T Consensus 241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 306 (393)
T PRK15011 241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM--------------AHSPA 306 (393)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--------------HhhHH
Confidence 87754 5999888888887777888889999999999999998776654443333222111 11222
Q ss_pred HHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Q 040949 377 FVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGL 456 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (490)
.......+.....+.. .+....+..|..|+ .++++.++.+...++|..++|.+.|.+.+..++...+....++.+.++
T Consensus 307 ~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~ 384 (393)
T PRK15011 307 ILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2222222222222211 12223445788885 589999999999999999999999999998887666666666666666
Q ss_pred HHHhhccc
Q 040949 457 FALFLLPE 464 (490)
Q Consensus 457 ~~~~~~~~ 464 (490)
+.++..||
T Consensus 385 ~~~~~~~~ 392 (393)
T PRK15011 385 FCLLRIKD 392 (393)
T ss_pred HHHHhhcC
Confidence 66666654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=235.08 Aligned_cols=338 Identities=12% Similarity=0.040 Sum_probs=231.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
+.++.+.+++.+.+.+++.++++++|+++||+|||++++.+.++.+++++++.++++. ++.|+++|++.+...|...
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6688899999999999999999999999999999999999999999999888877664 7789999999999999999
Q ss_pred HHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChH
Q 040949 147 LFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEV 226 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 226 (490)
+++.|++|+++|++++++.+....+|.++||.+++.... ..|+..+.+.+...++..+....+||+|++...++.+
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~---~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 186 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD---PHAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWN- 186 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCC-
Confidence 999999999999999999999999999999999655443 2477777776655544445556678876321110000
Q ss_pred HHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCC
Q 040949 227 AGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGF 305 (490)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 305 (490)
+ .+ ..++. +...+.+++++..+...+...+... ......+..|.+.++ .|.
T Consensus 187 ~-~~-------------~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg~ 238 (393)
T PRK11195 187 P-IA-------------LLRDF----------FHACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVLAWAPVALGI 238 (393)
T ss_pred H-HH-------------HHHHH----------HHHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC
Confidence 0 00 00000 0112344554443332222222221 223344455566654 599
Q ss_pred CCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHH
Q 040949 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLF 385 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (490)
++.+.+......+++.+++.+..+++.||.++|+.+..+. ..++....+.. .++.+.......+.
T Consensus 239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 303 (393)
T PRK11195 239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL--------------QHSLLPAYPLLILI 303 (393)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH--------------HhHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887766553 22222222211 12233333334344
Q ss_pred HHHhhccccccccccccccCCccc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Q 040949 386 VMAFAWSWGPLGWLIPSETFPLET-RTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGL 456 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (490)
+.+.+....+ ..+...+..|++. +|++.++.+...+++..++..+.+.+ +..+-.....+..++.+.+.
T Consensus 304 G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 304 GALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred HHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 4444433333 3445567666554 79999999999999999999998855 56664444444444444333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=232.68 Aligned_cols=345 Identities=11% Similarity=0.087 Sum_probs=242.3
Q ss_pred HHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 040949 21 LAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGR 100 (490)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr 100 (490)
+++...+..|++....++.. |.+ ++++|+|+.+.|++.+.+.+++.+++++.|++.||+||
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~--~~~-----------------~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~ 67 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMV--PQF-----------------QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY 67 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHH--HHH-----------------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 44455677777776665443 223 33458899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHH
Q 040949 101 KPTILVASSFFLAGAGISSG---ALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLAN 177 (490)
Q Consensus 101 r~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 177 (490)
|+++..+.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|
T Consensus 68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~ 147 (410)
T TIGR00885 68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM 147 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654 368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccC------------------------CCchHHHHHhhHHHHHHHHHHhhc--ccCchhHHhhcCChHHHHHH
Q 040949 178 LVNYGTAKLH------------------------PHGWRVSLALAGVPAIFLFIGSIV--ITETPTSLIERGNEVAGHKA 231 (490)
Q Consensus 178 ~~~~~~~~~~------------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~a~~~ 231 (490)
.++....... ..+||++|++.+++.++..+...+ .||.++ .++
T Consensus 148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-------~~~---- 216 (410)
T TIGR00885 148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-------SDA---- 216 (410)
T ss_pred HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------ccc----
Confidence 9865443211 136999999988876665444332 343210 000
Q ss_pred HHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc--CCCCch
Q 040949 232 LKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV--GFKNDA 309 (490)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~ 309 (490)
++.+.+.+.++.+|++. ++...+..++..........+++.+.++. +.+...
T Consensus 217 ----------------------~~~~~~~~~~~~~~~~~----~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~ 270 (410)
T TIGR00885 217 ----------------------KQISFSASLSRLARIRH----YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF 270 (410)
T ss_pred ----------------------ccccchhhHHHHHhChh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH
Confidence 00000112234444432 23334444444555556667788888765 333344
Q ss_pred hHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHh
Q 040949 310 SLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAF 389 (490)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (490)
++...........+|+++++++.||+++|+.+.....+..+..++... .+. ......+.+.+.+.
T Consensus 271 a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-------------~~~--~~~~~~l~~~glf~ 335 (410)
T TIGR00885 271 AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-------------AGG--HVGLYCLTLCSAFM 335 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-------------cCC--hHHHHHHHHHHHHH
Confidence 454556666778899999999999999999887776666665555543 111 12234444445554
Q ss_pred hccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 390 AWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
+..+ |..+....+..+++.+..+.++... .+|+.+.|++.|.+.|..
T Consensus 336 s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 336 SLMF-PTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHH-HHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHh
Confidence 4444 6666777788886665445554443 399999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=231.57 Aligned_cols=323 Identities=14% Similarity=0.132 Sum_probs=226.4
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|+|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|++.|++.+...+.
T Consensus 37 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 116 (394)
T PRK11652 37 DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVM 116 (394)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH-HhhcccCchhHHhhcC
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI-GSIVITETPTSLIERG 223 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~ 223 (490)
...+..|.+++++|+++.+....+..+|..++|.++. ...+..+||+.|++.++..++..+ ..++.||+++. +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~ 190 (394)
T PRK11652 117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG--LLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA----D 190 (394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc----c
Confidence 8889999999999999999999999999999999854 344557999999998877665543 34557776521 0
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT- 302 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (490)
+++ ++.+.++++.++++..+... +..+...........+.+.++++
T Consensus 191 ~~~-----------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T PRK11652 191 ARR-----------------------------TRVLASYRTLLSNRRFNCYL----LMLIGTLAGIAVFEACSGVLMGAV 237 (394)
T ss_pred cch-----------------------------hHHHHHHHHHHcChHHHHHH----HHHHHHHHHHHHHHHhChHHHHHH
Confidence 000 00011233344433222212 12222222333444555667766
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLV 382 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (490)
.|.++.+.+.......++.+++..+.+++.||.+++... ......++.+....... . ...+.+......
T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~ 306 (394)
T PRK11652 238 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGW--F-------GVMNVWTLLVPA 306 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--h-------ccccHHHHHHHH
Confidence 699988888888888888888888889999988733322 22222222222111100 0 112233334444
Q ss_pred HHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 383 CLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
.+.+.+.+. ..|.......|.+| +.++++.++.+....+|+.+++.+.+.+.+..
T Consensus 307 ~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 307 ALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 444444443 24455555668777 57899999999999999999999988876543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=230.80 Aligned_cols=323 Identities=15% Similarity=0.127 Sum_probs=229.6
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+++|+|.++.|++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ ..++++.+++.|++.|++.+...
T Consensus 27 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~ 105 (355)
T TIGR00896 27 RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIIN 105 (355)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHh
Confidence 33458999999999999999999999999999999999999999999988888877 77899999999999999999988
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhc
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIER 222 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 222 (490)
+....++.|++| ++|++++++.+.+.++|..+++.++.........+||+.|.+.++..++... .++|+.++ +
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~----~ 178 (355)
T TIGR00896 106 VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRR----R 178 (355)
T ss_pred ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhcc----c
Confidence 888889999986 6899999999999999999999885433322223499999877665443322 23444321 0
Q ss_pred CChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 040949 223 GNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (490)
++. +++..+.+.++.+|+ +..+...+..+.....+.....+.|.++++
T Consensus 179 ~~~----------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 226 (355)
T TIGR00896 179 VAA----------------------------NQTTTRLTPVRIWRS----PLAWQVTVFFGLQSGLYYSLIGWLPAILIS 226 (355)
T ss_pred cCC----------------------------CCCCCCCCCchhhcC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000001123334443 223333333334444456677889999988
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccC-chHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVG-RRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
.|++..+.+...+...++.++++++.|++.||++ ||+....+..+.+++...+... ...... . .
T Consensus 227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~-~ 291 (355)
T TIGR00896 227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-------------PMHGLW-A-W 291 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-------------hhhHHH-H-H
Confidence 8999999999999999999999999999999994 5556666656555555444331 111111 1 2
Q ss_pred HHHHHHHhhcccccccccccc-ccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 040949 382 VCLFVMAFAWSWGPLGWLIPS-ETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRA 441 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (490)
..+.+.+.+.. .+....... +..+++.++...++.+..+.++..++|.+.|.+.|+.+.
T Consensus 292 ~~l~g~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 292 ALVLGLGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344443322 333333333 334456778999999999999999999999999998774
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=233.29 Aligned_cols=323 Identities=12% Similarity=0.080 Sum_probs=217.4
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhhhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL-NIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~ 142 (490)
+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++.+++.+++++++ +++.+++.|+++|++.+ ..
T Consensus 30 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ 108 (366)
T TIGR00886 30 DDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SF 108 (366)
T ss_pred HHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hh
Confidence 44589999999999999999999999999999999999999999999999999999999 99999999999999866 45
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhccc--------CCCchHHHH-HhhHHHHHHH-HHHhhcc
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL--------HPHGWRVSL-ALAGVPAIFL-FIGSIVI 212 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~--------~~~~wr~~f-~~~~~~~~~~-~~~~~~~ 212 (490)
+....++.|++|+++|++++++.....++|..+++.++...... ...+||+.| +..++...+. .+...+.
T Consensus 109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 188 (366)
T TIGR00886 109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG 188 (366)
T ss_pred HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence 66788999999999999999999977777777776664322211 135899999 4445544443 3334456
Q ss_pred cCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhH
Q 040949 213 TETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAI 292 (490)
Q Consensus 213 ~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
+|+|+.. ++.++. ..++ .. .. .+++...+..+.++++. .+...+..+.........
T Consensus 189 ~~~~~~~---~~~~~~--~~~~---~~---~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 244 (366)
T TIGR00886 189 ADTPPGK---PATGKL--SFKG---AR---WS---------VGTGALGDQLKVFRDRH----TWILALLYSVTFGSFLGV 244 (366)
T ss_pred ccCCccc---ccchhc--cccc---cc---cc---------ccchhHHHHHHHHhccc----hhhHHHHHHHHHHHHHHH
Confidence 7765311 000000 0000 00 00 00000012333444432 233333333333345566
Q ss_pred HHhHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCccc
Q 040949 293 MFYAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLT 371 (490)
Q Consensus 293 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
..+.|.++++ +|+++.+++.......+..++++++.+++.||+++|+....+......+..++.... .
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------~ 313 (366)
T TIGR00886 245 SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL-----------V 313 (366)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC-----------C
Confidence 7788888865 499999999888888999999999999999999998877766655555444443211 1
Q ss_pred ch-hhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHH
Q 040949 372 TT-QAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFF 424 (490)
Q Consensus 372 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 424 (490)
.. +.+.......+.....+.. .+..+....+..| +++|+++|+.+..+++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 314 SPLSLAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred CcchHHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 11 2222222333333333333 3344566678877 68999999988887664
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=226.69 Aligned_cols=331 Identities=16% Similarity=0.113 Sum_probs=238.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTI----LVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (490)
+|+|.+++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|.++|.+.+..
T Consensus 34 ~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~ 111 (382)
T TIGR00902 34 IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAG 111 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 488999999999999999999999999999999985433 233222222 24446789999999999999999888
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhh
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIE 221 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~ 221 (490)
.|...++..++ +++|+++.+....+.++|.+++|++ .....+..|||..|++.++...+.++ ...++|+++ +
T Consensus 112 ~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l--~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~---~ 183 (382)
T TIGR00902 112 MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSAL--FGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIP---P 183 (382)
T ss_pred hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHH--HHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCC---C
Confidence 99988888765 4788999999999999999999998 44455567999999887655333232 233344321 0
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ 301 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
+++.++ ++++...+.++++|+ +.++...+..+...........+.|.+++
T Consensus 184 ~~~~~~--------------------------~~~~~~~~~~~~l~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~l~ 233 (382)
T TIGR00902 184 KDAIPE--------------------------DESQGDSAFIALLKN----PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ 233 (382)
T ss_pred Cccccc--------------------------cccccchhHHHHHcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000111234455555 33444444444444556677778888888
Q ss_pred HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 302 TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 302 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
+.|.++.+.+.......++.+++..+.+++.||+++|+.+..+..+..+....+.. .++.+..+..
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 299 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA--------------IEAFPLIFLL 299 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh--------------HhhHHHHHHH
Confidence 89999999999999989999999999999999999999998888888877766653 2344555555
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHH-HHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVS-SNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWIL 452 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
..+.+..++.... ....++.+. |++.++++.++.+. ...+|..+++.+.|.+.|..+...++..+.+.+
T Consensus 300 q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 300 QILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666666655433 345566777 88899999999764 567899999999999999988655555554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=223.17 Aligned_cols=350 Identities=11% Similarity=0.064 Sum_probs=231.1
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGR-KPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
++|+|..++|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+.+.|++.|++.+...+
T Consensus 32 ~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (418)
T TIGR00889 32 TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIA 111 (418)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHH
Confidence 458899999999999999999999999999999965 7788888988888888889999999999999999998877777
Q ss_pred hHHHHhh--------hcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCc
Q 040949 144 AVPLFLS--------EIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITET 215 (490)
Q Consensus 144 ~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 215 (490)
...++.. |......|.+..| .+|.+++|.++... .....|+ +|++.++..++..+..+++||+
T Consensus 112 ~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l--~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~ 182 (418)
T TIGR00889 112 LTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL--DIELSNI-QLYITAGSSALLGVFALTLPDI 182 (418)
T ss_pred HHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh--cccchhH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 6665532 2233334555555 36777777774333 2223455 4555566555555556678887
Q ss_pred hhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 216 PTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 216 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
|+. ++++++ +..+..+.+.++.+|++.........++. .........+
T Consensus 183 ~~~---~~~~~~-------------------------~~~~~~~~~~~~~~k~~~~~~~~~~~~~~----~~~~~~~~~~ 230 (418)
T TIGR00889 183 PVA---KSTAKM-------------------------SIKVMLGLDAFILFKNKRMAIFFFFSMLL----GAPLQITNIF 230 (418)
T ss_pred CCC---cccccc-------------------------CHHHHhhhhHHHHhcCCCeeeHHHHHHHH----HhHHHHHHHh
Confidence 631 000000 00000011233455554433322322222 2222344466
Q ss_pred HHHHHHHcCCCC--------chhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 296 APVLFQTVGFKN--------DASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 296 ~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
.|.++++.|.++ ...+...+...+..+++.+..+++.||+|+|+.+..+.++..++...+....
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-------- 302 (418)
T TIGR00889 231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-------- 302 (418)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 677777766544 5568888888899999999999999999999999888887777655444310
Q ss_pred Ccccch-hhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHH-HHHHHHHHHHHHHhHHHHHhhh-----
Q 040949 368 NTLTTT-QAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAV-SSNMFFTFLIAQAFLSMMCHMR----- 440 (490)
Q Consensus 368 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 440 (490)
... ..+..+....+.+.+.+. ..+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.+..+
T Consensus 303 ---~~~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~ 378 (418)
T TIGR00889 303 ---PEYFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTF 378 (418)
T ss_pred ---cchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCC
Confidence 001 112223334444444332 23444566789999999999999997 5678999999999999999854
Q ss_pred -hH-HHHHHHHHHHHHHHHHHhhcccCCC
Q 040949 441 -AY-IFFFFAGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 441 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
+. .+...+++..+.+++..++.+|+++
T Consensus 379 ~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 379 DWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 33 3444555556666666677776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=220.45 Aligned_cols=327 Identities=13% Similarity=0.108 Sum_probs=225.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcch----hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRK----PTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (490)
+|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. ........+++|.+++.|++.|++.+..
T Consensus 34 ~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~ 111 (382)
T PRK11128 34 QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPL 111 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHccc
Confidence 388999999999999999999999999999999994 3333322222 2233344688999999999999999989
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhh
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIE 221 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~ 221 (490)
.|...++..++ +++|+++.+......++|..+||++ +....+..|||..|++.++..++..+...+.||.++
T Consensus 112 ~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~l--gg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~---- 183 (382)
T PRK11128 112 VPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSAL--TGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP---- 183 (382)
T ss_pred ccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHH--HHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----
Confidence 99888888877 4668888999999999999999999 445555579999999877655444444444454321
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ 301 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
+++++ +..++...++++++|++. ++...+..+...........+.|.+.+
T Consensus 184 ~~~~~--------------------------~~~~~~~~~~~~i~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ 233 (382)
T PRK11128 184 QGESR--------------------------QQESAGWPAWKALLKEPT----VWRFLLCVSLLQGSHAAYYGFSAIYWQ 233 (382)
T ss_pred ccccc--------------------------cccccccchHHHHHcChh----HHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 00000 000011234566666543 333333223222334455667788888
Q ss_pred HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 302 TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 302 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
+.|.+..+.+.......++.++..++.+++.||+++|+.+..+....++..+++.. .++.+..+..
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 299 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS--------------TTALPWLIVI 299 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh--------------hhhHHHHHHH
Confidence 88999989999888888889999999999999999999988887777766554432 1234444445
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHHH-HHHHHHHHHHHhHHHHHhhhhHHHHHHH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSS-NMFFTFLIAQAFLSMMCHMRAYIFFFFA 448 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (490)
..+.+.+.+.. .+....+..+. +++++++..+..+.. ...|..++|.+.|.+.|..+...++..+
T Consensus 300 ~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~ 365 (382)
T PRK11128 300 QILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMA 365 (382)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 55555554433 33334555565 556678888887644 5667789999999999998765444333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=220.98 Aligned_cols=347 Identities=13% Similarity=0.111 Sum_probs=228.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh-----cchh-HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKF-----GRKP-TILVASSFFLAGAGISSGA---LNIWMLIIGRILLGIG 137 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 137 (490)
|+|.+++|++..+... .+..+++|+++||+ |||| .+..+.++.+++..+.++. .+++.+++..++.++.
T Consensus 30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~ 107 (402)
T PRK11902 30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFL 107 (402)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 8899999999777776 59999999999999 8875 7888888888888887776 3578888888888999
Q ss_pred hhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCC-CchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 138 VGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHP-HGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
.+...+...+++.|+.|+++|+++.++...+.++|.++++.++. ...+. .|||..|++.++..++..+..++.||++
T Consensus 108 ~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~--~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 108 SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL--WLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH--HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999998843 33343 5999999998887766655555677764
Q ss_pred hHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhH
Q 040949 217 TSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYA 296 (490)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+. +++.++. +++.+.++++++|++..+.......+...... .......
T Consensus 186 ~~---~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~ 233 (402)
T PRK11902 186 VP---ARPPRSL--------------------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLST 233 (402)
T ss_pred cc---ccccchh--------------------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHH
Confidence 31 0000000 00011234556666543333332222222111 1112233
Q ss_pred HHHHHHcCCCCchhHHHHHHHh-HHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhh
Q 040949 297 PVLFQTVGFKNDASLLSSVITG-TVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQA 375 (490)
Q Consensus 297 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (490)
+.+.++.|+++++.+......+ ++.+++.++.+++.||+++|+.+..+..+..+..+.+..... ..++.
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~ 303 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV----------TPKHL 303 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----------cCCcH
Confidence 4455667999998888876554 457899999999999999998877666655544433322111 11122
Q ss_pred HHHHHHHHH---HHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Q 040949 376 GFVVFLVCL---FVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWIL 452 (490)
Q Consensus 376 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
+.......+ ..........+....++.+.+|.+. .+..+....++...++.+.|.+.|..|+...+..++++.
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~ 379 (402)
T PRK11902 304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 322222221 1111111223344555666666544 455555666777767778999999999876666666666
Q ss_pred HHHHHHHhhcc
Q 040949 453 VMGLFALFLLP 463 (490)
Q Consensus 453 ~~~~~~~~~~~ 463 (490)
+.+++.....+
T Consensus 380 ~~~~~~~~~~~ 390 (402)
T PRK11902 380 LPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHh
Confidence 55555444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=222.50 Aligned_cols=351 Identities=14% Similarity=0.094 Sum_probs=213.1
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHh---hhh-----hHHHHHHHHHHhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS---GAL-----NIWMLIIGRILLGI 136 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~ 136 (490)
++|+|..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++..... .++ .....++.+++.|.
T Consensus 40 ~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (420)
T PRK09528 40 INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF 119 (420)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3588999999999999999999999999999999999999887666655433221 111 11112233444444
Q ss_pred hhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhccc-Cc
Q 040949 137 GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVIT-ET 215 (490)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-es 215 (490)
+.....+....+..+. .+++++.++......++|..++|.++.... + .+|+.+|++.+++.++..+..++.+ |+
T Consensus 120 ~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~--~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 120 GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILF--N-INPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHH--h-cCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 3333333333333222 345678888999999999999999965443 2 4899999998888777665555543 33
Q ss_pred hhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 216 PTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 216 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
++.... ++++ ..++++.......+.+|++..+...+....... .+.....+
T Consensus 195 ~~~~~~--~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~----~~~~~~~~ 245 (420)
T PRK09528 195 PSTAKV--ANAL-----------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVAC----FYDVFDQQ 245 (420)
T ss_pred cchhhh--ccch-----------------------hcccccccHHHHHHHccCCCeEeehHHHHHHHH----HHHHHHHH
Confidence 210000 0000 000000001123345555443332222222211 12223333
Q ss_pred HHHHHHH----cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCccc
Q 040949 296 APVLFQT----VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLT 371 (490)
Q Consensus 296 ~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
.|.++.+ .+.+..+.+...+...++..++.++.|++.||+++|+.+..+..+..+...+..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------- 312 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------- 312 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------
Confidence 4444432 35666677888888888889999999999999999999887777776665555431
Q ss_pred chhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHH-HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH-HH
Q 040949 372 TTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAF-AVSSNMFFTFLIAQAFLSMMCHMRAYIFFFF-AG 449 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 449 (490)
.+.+..+....+.+...... .+....+..|.+|++.+++..+. .+....+|..+++.+.|.+.|..|+...+.. +.
T Consensus 313 -~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~ 390 (420)
T PRK09528 313 -TGPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG 390 (420)
T ss_pred -ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 22333333333333333222 22334566788899999888765 5677889999999999999998886655554 44
Q ss_pred HHHHHHHHHHhhccc
Q 040949 450 WILVMGLFALFLLPE 464 (490)
Q Consensus 450 ~~~~~~~~~~~~~~~ 464 (490)
+..+..++.....++
T Consensus 391 ~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 391 IVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHhcC
Confidence 333444444444443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=220.73 Aligned_cols=345 Identities=15% Similarity=0.144 Sum_probs=248.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhhhhhhhhh
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA-----LNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
|+..++++.++..+...+.++++|.++||++||++++.+.++.++..+..++. .+.+.+++.-++.|++.+...|
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999998887666555443 4788999999999999999999
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcC
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERG 223 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~ 223 (490)
+..+.+.|..|+++...++++.+...++..++||.+++... ...|-.+.|.+.++..++.+......+..++ +++
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv--a~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~ 197 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV--AFFGAAAAFLINALSFLISILALLRWKPPPP---PSS 197 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccc
Confidence 99999999999999999999999999999999999965443 3357778888887765555444443332210 000
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT- 302 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (490)
..+| +..++.+..++-+.+++. +...++..+............+|.+.++
T Consensus 198 ~~~e-------------------------~~~~~l~~G~ryv~~~~~----l~~~l~~~~~~~l~~~a~~aLlPl~a~~~ 248 (524)
T PF05977_consen 198 LPRE-------------------------RFFSALREGLRYVRSSPP----LRSVLLRSFLFNLFASAVWALLPLFARDV 248 (524)
T ss_pred cchh-------------------------hhhhhHHHHHHHHhcchH----HHHHHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 0000 000111122222222222 2222222222222233445567888865
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLV 382 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (490)
.|.++...|++.+..+++.++|.++.+++.+|+++++.+..+.+..+++.+.+++ .++.+.....+
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal--------------~~~~~~~~~~l 314 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL--------------SPSFWLALIAL 314 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc--------------chHHHHHHHHH
Confidence 4899999999999999999999999999999999988888877777766665554 23444445555
Q ss_pred HHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 040949 383 CLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (490)
++.+.+.... .....+..++..|++.||+++++.++....+..+|..+.|.+.+..+....+..++++.+.+.+.....
T Consensus 315 ~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 315 FLAGAAWIIA-NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555554433 334456678999999999999999999999999999999999999986655555555544444444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=233.04 Aligned_cols=376 Identities=16% Similarity=0.223 Sum_probs=269.5
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIG-RILLGIGVGFG 141 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~ 141 (490)
.++|+.+..+++|+.++....+.+..|+.+.+.||+|.|++.+.|.++.+++.++.+|++++|++++. -++.|+|.|..
T Consensus 73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~ 152 (509)
T KOG2504|consen 73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLI 152 (509)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhh
Confidence 34457788889999999999999999999999999999999999999999999999999999988886 68899999999
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc-cCchhHHh
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI-TETPTSLI 220 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~ 220 (490)
+......+..|++ |+|+.+.|+..++.++|.++-|.+ .-...+..|||+.+++.+.+.+-..+....+ |.+++...
T Consensus 153 ~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l--~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~ 229 (509)
T KOG2504|consen 153 YLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPL--LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKP 229 (509)
T ss_pred hcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCc
Confidence 9999999998884 889999999999999999999988 5555666899999999888876665554443 32322111
Q ss_pred hcCChHHHHHHHHHh----h--------Cch-hhH----HHHHHHHHHHHHHh--hcccch----HHhcccCCCchHHHH
Q 040949 221 ERGNEVAGHKALKKI----R--------GVE-DVN----AEYEQIKLASDIAR--QVKHPF----KELMKRSSMPPLIIG 277 (490)
Q Consensus 221 ~~~~~~~a~~~~~~~----~--------~~~-~~~----~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~ 277 (490)
. .++..+..... . ..+ ... .+.+..+...++.+ ..+... .+++++ +.++.
T Consensus 230 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~ 302 (509)
T KOG2504|consen 230 N---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLL 302 (509)
T ss_pred h---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----chHHH
Confidence 1 00000000000 0 000 000 00000000000001 111111 344554 66777
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHH--HHhhHHHHHHHHHH
Q 040949 278 VLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLL--LQACVQMFISQSTI 355 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~--~~~~~~~~~~~~~~ 355 (490)
+.+...+...++.....++|.+.++.|++..+++...+..++..++++++.|++.|+...++.. ..+.+..++....+
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~ 382 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFL 382 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 7777777788889999999999999999999999999999999999999999999998754443 33333333333222
Q ss_pred HHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 040949 356 GGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSM 435 (490)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (490)
.. ..+.+.......+++...+ .+..+....+.|+.+.++-..+.|+...+..++..++|++.|.+
T Consensus 383 p~--------------~~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~ 447 (509)
T KOG2504|consen 383 PF--------------ATTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL 447 (509)
T ss_pred HH--------------hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence 21 1222333333334443333 33445555678999999999999999999999999999999999
Q ss_pred HHhhh-hHHHHHHHHHHHHHHHHHHhhcc
Q 040949 436 MCHMR-AYIFFFFAGWILVMGLFALFLLP 463 (490)
Q Consensus 436 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 463 (490)
.|..+ +...+.+++++.+.+..+++..+
T Consensus 448 ~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 448 YDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99888 55666677777766666666555
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=222.84 Aligned_cols=329 Identities=13% Similarity=0.108 Sum_probs=222.9
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh----hcch-hHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHH
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTK----FGRK-PTILVASSFFLAGAGISSGALN------IWMLIIGRIL 133 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 133 (490)
++|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++.+.++ ...+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 458899999999999999999999999999997 7874 4677888888888888877653 4677788999
Q ss_pred hhhhhhhhhhhHHHHhhhcC-CCCccchHHhHHHHHHHHHHHHHHHHHHHhcc-----cCCCchHHHHHhhHHHHHHHHH
Q 040949 134 LGIGVGFGNEAVPLFLSEIA-PVQHRGAVNILFQLFVTIGIFLANLVNYGTAK-----LHPHGWRVSLALAGVPAIFLFI 207 (490)
Q Consensus 134 ~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~ 207 (490)
.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+...... .+..+||+.+.+.+++.++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 99999988888888999987 46899999999998888887776654322211 1346899999999888777654
Q ss_pred H-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHh
Q 040949 208 G-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQF 286 (490)
Q Consensus 208 ~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (490)
. .+..||+++. .+.++ +++.+.++.++++++++ .++...+..+...
T Consensus 189 ~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~ 235 (437)
T TIGR00792 189 ICFFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKALFKND----QLLILCLAYLFYN 235 (437)
T ss_pred HHHcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHHhCCH----HHHHHHHHHHHHH
Confidence 4 4556765410 00000 00000111233444442 2333333333333
Q ss_pred hchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcc
Q 040949 287 TGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (490)
........+.+++.+.. + ++...+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-------- 306 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF-------- 306 (437)
T ss_pred HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--------
Confidence 33333334445555433 4 4555666677778889999999999999999999988887766666554433
Q ss_pred ccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCC-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040949 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
..++.+.......+.+.+.+.. .+..+++.+|..+ ++.+|++.|+.+....++..+++.+.|.+.+.
T Consensus 307 -----~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 307 -----AGSNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233333334444443322 3455566667654 55679999999999999999999999999886
Q ss_pred hhh
Q 040949 439 MRA 441 (490)
Q Consensus 439 ~~~ 441 (490)
.|+
T Consensus 381 ~G~ 383 (437)
T TIGR00792 381 IGY 383 (437)
T ss_pred cCC
Confidence 553
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=215.22 Aligned_cols=320 Identities=13% Similarity=0.106 Sum_probs=217.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh-----cchhH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKF-----GRKPT-ILVASSFFLAGAGISSGA---LNIWMLIIGRILLG 135 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G 135 (490)
|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....++.+
T Consensus 17 ~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~ 94 (356)
T TIGR00901 17 SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIA 94 (356)
T ss_pred HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 348999999999765 555555 99999999998 89887 567788888887777777 46677888888999
Q ss_pred hhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCc--------hHHHHHhhHHHHHHHHH
Q 040949 136 IGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHG--------WRVSLALAGVPAIFLFI 207 (490)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~--------wr~~f~~~~~~~~~~~~ 207 (490)
++.+...+...+++.|++|+|+|+++.++...+.++|.++++.++. ......+ ||..|++.++..++..+
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~--~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~ 172 (356)
T TIGR00901 95 FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLAL--VLASPEFANTGLITLWGYIFFWTALLILPGLL 172 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHH--HHhhhcccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999853 3333345 99999999887777655
Q ss_pred Hhhc-ccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHh
Q 040949 208 GSIV-ITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQF 286 (490)
Q Consensus 208 ~~~~-~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (490)
..++ .||+++. ++.++ ++ +++.+.+++++++++..++ .+...+..+...
T Consensus 173 ~~~~~~~e~~~~----~~~~~---------------~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 222 (356)
T TIGR00901 173 VTLFLAKEPQED----ASVPK---------------PL----------TQAVLKPIREFFQRKNMIQ-ALLLLLLIVLYK 222 (356)
T ss_pred HHHHhccCCCcc----cccch---------------hH----------HHHHHHHHHHHHHhcCchH-HHHHHHHHHHHH
Confidence 5444 5664310 00000 00 0001123445555443223 332333333334
Q ss_pred hchhhHHHhHHHHHHHcCCCCchhHHHHHHHh-HHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcc
Q 040949 287 TGINAIMFYAPVLFQTVGFKNDASLLSSVITG-TVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (490)
........+.|.++++.|+++.+.+......+ +..+++.++++++.||+|+|+.+..+..+..+......+... ..+
T Consensus 223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--~~~ 300 (356)
T TIGR00901 223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS--NGH 300 (356)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh--cCc
Confidence 44566777888888889999999888777665 567889999999999999999888777766665444433210 000
Q ss_pred ccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHH
Q 040949 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 422 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 422 (490)
..+ ....+.+.......+...+.+. ..+...++..|.+|+++||+..|+.+...+
T Consensus 301 ~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 301 HDG-ITFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccc-cccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 000 0001223333333333444332 345556778899999999999999877653
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=243.23 Aligned_cols=326 Identities=12% Similarity=0.003 Sum_probs=224.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS---GALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
+....+++.+++.+++.++++++|+++||+|||++++++.++..+..++.. ..++++.++++|+++|++.+...+..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 456689999999999999999999999999999999998877666555444 45789999999999999999999999
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccC-------CCchHHHHHhhHHHH-HHHHHHhhcccCchh
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLH-------PHGWRVSLALAGVPA-IFLFIGSIVITETPT 217 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~-------~~~wr~~f~~~~~~~-~~~~~~~~~~~esp~ 217 (490)
.+++.|++|+++|++++++...+.++|.++|+.++....... ..+|++.+.+..+.. ++.++..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999965544320 123444444443333 333444556788764
Q ss_pred HHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHH
Q 040949 218 SLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAP 297 (490)
Q Consensus 218 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
+...+++.++. ...+.....++.+++++. ++...+..+...........+.|
T Consensus 205 ~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 256 (1146)
T PRK08633 205 AAPEVFDKKKY------------------------LFPKLLWRNLKLLRSDRV----LWLAIIGLSYFWFISQLAQANFP 256 (1146)
T ss_pred CCccccccccc------------------------ccHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHHHHhhH
Confidence 31111000000 000001122344444432 23233222222233345556667
Q ss_pred HHHH-HcCCCCc-hhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhh
Q 040949 298 VLFQ-TVGFKND-ASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQA 375 (490)
Q Consensus 298 ~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (490)
.+++ ..|++.. ..+++.+...++.+++.++.+++.||+++++.+..+.++.+++.+.+... .+.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 322 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--------------PSL 322 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--------------hhH
Confidence 7775 4599988 88999999999999999999999999999888777766666555544431 133
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040949 376 GFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC 437 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (490)
+..++..++++.+.+.. .+...+++.+..|++.||+++|+.+.+..++..+++.+.+.+..
T Consensus 323 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433 33445667899999999999999999999988777766665543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=245.53 Aligned_cols=337 Identities=12% Similarity=-0.006 Sum_probs=229.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 70 NQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILV---ASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 70 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
....++..+++.+++.++++++|+++||+|||+++.. +.+...+..+.....+++++++++|+++|++.+...|...
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3567889999999999999999999999999998643 2333333333334458999999999999999999999999
Q ss_pred HHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChH
Q 040949 147 LFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEV 226 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 226 (490)
+++.|++++++|++++++.+++.++|.++||++++. .....+|++.|+..++..++.++..+++|+++.. .++...
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 206 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL--ATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKI 206 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCee
Confidence 999999999999999999999999999999999544 4445799999955555555555556667765420 000000
Q ss_pred HHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCC
Q 040949 227 AGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGF 305 (490)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 305 (490)
+. .. .++....++.+.+++ .++...+..+...........+.|.++++ .|.
T Consensus 207 ~~--------------~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 207 DR--------------NI----------IRSTITLLKYAKADK----RIWLAILGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred cc--------------ch----------HHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 00 00 000011244444443 34444443333333445666788888876 499
Q ss_pred CCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccC------cccchhhHHHH
Q 040949 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSN------TLTTTQAGFVV 379 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 379 (490)
++...+.+.+..+++.+++.++.+++.|+..+++.+..+..+.+++.+.+.+........... .....+.+...
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 999999999999999999999999999887776665555554444433332210000000000 00012333344
Q ss_pred HHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 380 FLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
+..++++.+.+.. .+...+++.+..|++.+|+++|+.++...++..+++.+.+.+.+..
T Consensus 339 ~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 339 IDLFGLAAAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444433 3345677789999999999999999999999999999999887543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=213.14 Aligned_cols=342 Identities=13% Similarity=0.068 Sum_probs=220.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHh---hh-----hhHHHHHHHHHHhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS---GA-----LNIWMLIIGRILLGIG 137 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~l~~~r~l~G~~ 137 (490)
+|.|..+.|++.+.+.+++.+++++.|+++||+|||+.++.+....+++..... +. +....+++.|++.|++
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV 112 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999987776655443321 11 2334566778999999
Q ss_pred hhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc-ccCch
Q 040949 138 VGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV-ITETP 216 (490)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp 216 (490)
.+...+....+..|.. +++++..+......++|.+++|.++... .+ .+||.+|++.+++.++..+..+. .||+|
T Consensus 113 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l--~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 113 FSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGIL--FS-IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred hccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhh--hc-cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 8888888888877753 3345677788888899999999995433 22 59999999988887776555444 44443
Q ss_pred hHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhH
Q 040949 217 TSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYA 296 (490)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+. ++.+++ . +.++++++..+..+.+|++.. +...+..+.....+.....+.
T Consensus 188 ~~----~~~~~~--------------------~-~~~~~~~~~~~~~~~l~~~~~----~~~~l~~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 188 SS----ATVANA--------------------L-GANASAFSLKLALELFRQRKF----WMFVLYVVGVACVYDVFDQQF 238 (396)
T ss_pred hh----hhhhcc--------------------c-ccccCCCCHHHHHHHHcCCcH----HHHHHHHHHHHHHHHHHHHHH
Confidence 11 000000 0 000001111234556655432 222222222222233344455
Q ss_pred HHHHHHc----CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccc
Q 040949 297 PVLFQTV----GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTT 372 (490)
Q Consensus 297 ~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (490)
+.++++. +.+....+...+...+...++.+..+++.||+++|+.+..+..+.++...+... .
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~--------------~ 304 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF--------------A 304 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh--------------c
Confidence 6666543 445566778888888888889999999999999999988877766665544332 1
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHH-HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH-HHH
Q 040949 373 TQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAF-AVSSNMFFTFLIAQAFLSMMCHMRAYIFFFF-AGW 450 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 450 (490)
.+.+.......+.+.+.... ......+..+..|++.++++.+. .+....+|+.+++.+.|.+.|..|+...+.. +.+
T Consensus 305 ~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 305 TTALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 23333333333333332211 12233445677788888887766 5678899999999999999998886544444 444
Q ss_pred HHHHHH
Q 040949 451 ILVMGL 456 (490)
Q Consensus 451 ~~~~~~ 456 (490)
..+.++
T Consensus 384 ~~i~~~ 389 (396)
T TIGR00882 384 VLLFTL 389 (396)
T ss_pred HHHHHH
Confidence 444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=202.42 Aligned_cols=341 Identities=12% Similarity=0.023 Sum_probs=222.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
+.+....|.+.|.|.+++.+.++.+|.++||+|||+++.+|++..++...+.+.++|+..+.++|++.|+..| ......
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3577889999999999999999999999999999999999999999999999999999777777999999988 678889
Q ss_pred HHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc---cCCCc-hHHHHHhhHHHHHH-HHHHhhcccCchhHHhh
Q 040949 147 LFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK---LHPHG-WRVSLALAGVPAIF-LFIGSIVITETPTSLIE 221 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~---~~~~~-wr~~f~~~~~~~~~-~~~~~~~~~esp~~~~~ 221 (490)
++++|.+++|+|+++++.+....++|.++||.+++.... ....- .-.+-++..+.+.. .....+++||+- ..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL---~~ 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL---PL 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc---cc
Confidence 999999999999999999999999999999999765554 11111 11222333333333 345567889983 22
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCch---HHHHHHHHHHHHhhchhhHHHhHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPP---LIIGVLLQVFQQFTGINAIMFYAPV 298 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
+++.++... +++. .+.+++..+.+ +.......|++.... ....+.+..+.+...+..+.++.+.
T Consensus 220 rk~~~~~~~-~~~~---~~~~~~~~~~~---------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 220 RKRNDEHST-LQEA---ADDRLALLKFA---------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred hhhcccccc-hhhh---hhhhhhhcchh---------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 222211100 0000 00000000000 000011122222211 2223334444444444444444444
Q ss_pred HH-HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccC--chHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhh
Q 040949 299 LF-QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVG--RRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQA 375 (490)
Q Consensus 299 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (490)
+. ++.|+++.+.|.+++..++.+.+.+....+..||.. .+..+..+..++.-..+++.. ....
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~--------------~~~~ 352 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL--------------ARTP 352 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc--------------cccc
Confidence 43 456999999999999999888888887777777765 333333333333222222221 1222
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 376 GFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
..+.....+..+... ...+....+.....|++.||+++|+....+.++-+++|.+.|.+..+.
T Consensus 353 ~~l~~~s~l~sf~~A-~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTA-SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred hhhhHHHHHHHHHHH-HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 333333333333322 334444566788999999999999999999999999999998876654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=193.43 Aligned_cols=325 Identities=10% Similarity=0.082 Sum_probs=246.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS---GALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
|+++..+.+++..+++.+|.+++++.|++.+|+|+|+.++.|+.++++++.+.. ...++..++++-++.|.|.+...
T Consensus 43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~Le 122 (422)
T COG0738 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLE 122 (422)
T ss_pred hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHH
Confidence 489999999999999999999999999999999999999999999999999985 55789999999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhccc-----------------CCCchHHHHHhhHHHHHHH
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL-----------------HPHGWRVSLALAGVPAIFL 205 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~-----------------~~~~wr~~f~~~~~~~~~~ 205 (490)
+....+++...++++..+.+.+.+..+++|.+++|+++...... +...||++|...+...+++
T Consensus 123 taaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll 202 (422)
T COG0738 123 TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLL 202 (422)
T ss_pred hccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999997555441 0124888888877766665
Q ss_pred HHHhhc--ccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHH
Q 040949 206 FIGSIV--ITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVF 283 (490)
Q Consensus 206 ~~~~~~--~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (490)
.+.... .|+.+. ..++..+..+....+++++ +.+....+..+
T Consensus 203 ~v~~~~~k~p~~~~--------------------------------~~~~~~~~~~~~~~~l~~~----~~~~~gvl~~F 246 (422)
T COG0738 203 AVLILLSKLPDLQV--------------------------------AAPSLGASGSAGLSSLFQN----KHLRLGVLAIF 246 (422)
T ss_pred HHHHHhccCCcCCc--------------------------------ccccccccccchHHHHHhC----hHHHHHHHHHH
Confidence 544433 344321 0000001111135566666 44666667777
Q ss_pred HHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHh
Q 040949 284 QQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 362 (490)
++.........|++.++.+ .|.+..++....+....+.++|++++.++.+|+...|.+....++..+.++...+.
T Consensus 247 lYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~---- 322 (422)
T COG0738 247 LYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI---- 322 (422)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh----
Confidence 7777888889999999988 69999999999999999999999999999999998888876665554444444331
Q ss_pred hccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
+..+.+....+.+...+ ...|...+...+..| ++ ....|..-.+..+|+++.|++.|++.|+.+..
T Consensus 323 -----------~g~v~~~~l~~ig~F~s-imfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~ 388 (422)
T COG0738 323 -----------GGVVALYALFLIGLFNS-IMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQ 388 (422)
T ss_pred -----------cChHHHHHHHHHHHHhH-HHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhH
Confidence 11333444444444444 335555666667777 33 33334445677789999999999999998854
Q ss_pred HH
Q 040949 443 IF 444 (490)
Q Consensus 443 ~~ 444 (490)
..
T Consensus 389 ~~ 390 (422)
T COG0738 389 LT 390 (422)
T ss_pred HH
Confidence 33
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=203.33 Aligned_cols=344 Identities=13% Similarity=0.038 Sum_probs=240.5
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
+++.+-+++++|++.+++.+.+.+.+++.|.+.||+|+|-.+++|+.++..+++++++.++++.++++|.+||+|.++..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCc-cchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhh
Q 040949 143 EAVPLFLSEIAPVQH-RGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIE 221 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~ 221 (490)
++..++++|.+|+++ |++++|+...+.++|..+||++ ++...+..|.+.+|++.+++.++-..+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf--GGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---- 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF--GGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE---- 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc--ccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc----
Confidence 999999999998764 7999999999999999999999 666777789999999999999888766655433210
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHH-
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLF- 300 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 300 (490)
.++++.++..+++++++++. ++.................--++.+.
T Consensus 252 -----------------------------~~~~~~~~~~~~~~Ll~dP~----I~~~agai~~~n~~lafLePtlslwm~ 298 (464)
T KOG3764|consen 252 -----------------------------MDPDSTEQGTPMWSLLMDPY----ILLIAGAITFSNSSLAFLEPTLSLWML 298 (464)
T ss_pred -----------------------------cCccccccCccHHHHHhCch----HhhhhcchhhccchHHHhCcccHHHHH
Confidence 00001223445677776643 33222222222222223333334444
Q ss_pred HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 301 QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 301 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
++..-+.-+.|+.+....+...++..+.|.+.||++.-+.+.....+..++......-.. + .....+....
T Consensus 299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~----~-----~~~~L~vp~~ 369 (464)
T KOG3764|consen 299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA----T-----SIAQLWVPNF 369 (464)
T ss_pred HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh----h-----hHHHHhhhhH
Confidence 445644448889999999999999999999999999544333332223333222221111 0 1122333333
Q ss_pred HHHHHHHHhhccccccccccccccCCcc---chhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHH-HHHHHHHHHHHH
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLE---TRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYI-FFFFAGWILVMG 455 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 455 (490)
.+++.+........|....+ .+.-..+ .-|..+++......++.+++|.+.|.+.+..|..+ ..+++....+-+
T Consensus 370 ~l~~~i~~~dasl~P~l~~l-vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 370 GLGFGIGLADASLIPTLGYL-VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHHHHHHHHHHhhhhHHh-cchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 33433333333334433222 2333333 55889999999999999999999999999988543 333344344333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=209.45 Aligned_cols=358 Identities=11% Similarity=0.038 Sum_probs=218.1
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSGALNIWM-LIIGRILLGIGVGFGN 142 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~ 142 (490)
++|++.++.+++.+.+.....+..+++|+++|| +||||++.++.+++++++++++++++... ++++|+++|+|.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 358899999999999999999999999999999 99999999999999999999999876554 5578999999999999
Q ss_pred hhHHHHhhhcCCCC--ccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHh
Q 040949 143 EAVPLFLSEIAPVQ--HRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLI 220 (490)
Q Consensus 143 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~ 220 (490)
|...+++.|.+|++ +|++++++++.+.++|..+||.++ ....++.|||+.|++.++..++.++...+.++..+...
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~--g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~ 201 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA--PVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIG 201 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH--HHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccC
Confidence 99999999999877 457899999999999999999994 44455679999999865533333333333332211100
Q ss_pred --hcCChHHHHHHH-------------HHhhCchhhHHHHHHH----HHHHHHHhhcccchHHhcccCCCchHHHHHH--
Q 040949 221 --ERGNEVAGHKAL-------------KKIRGVEDVNAEYEQI----KLASDIARQVKHPFKELMKRSSMPPLIIGVL-- 279 (490)
Q Consensus 221 --~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 279 (490)
.++++.+..... ....+........... ....-..++.+.+ +.+|+ +.+....
T Consensus 202 ~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~--~~~r~----r~~~~~~l~ 275 (489)
T PRK10207 202 SEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLD--KTGRN----KMFVAFVLM 275 (489)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHH----HHHHHHHHH
Confidence 011111110100 0000000000000000 0000000000111 22222 2222111
Q ss_pred HHHHHHhhchhhHHHhHHHHHHH-cCCCC----chhHHHHHHHhHHHHHHHHhhhhhhcccCchH-------HHHHhhHH
Q 040949 280 LQVFQQFTGINAIMFYAPVLFQT-VGFKN----DASLLSSVITGTVNVLSTLVSIYAVDKVGRRK-------LLLQACVQ 347 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-------~~~~~~~~ 347 (490)
+........+.......+.+.++ .+.+. .....+.....+..++..++.+++.||+++|+ .+..+.++
T Consensus 276 ~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l 355 (489)
T PRK10207 276 LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFL 355 (489)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 11222223334444455556553 22211 12233444555666677788899999999886 35566666
Q ss_pred HHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHH
Q 040949 348 MFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFL 427 (490)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 427 (490)
.+++.+.+...... ... .+ ...+.++.+....+.+.+... ..+.....+.+..|++.++.++|+.+....+|+.+
T Consensus 356 ~~~~~~~~~~~~~~-~~~--~~-~~~s~~~~i~~~~l~g~Ge~~-~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l 430 (489)
T PRK10207 356 CSLGFLTAAAAGMW-FAD--AQ-GLTSPWFIVLVYLFQSLGELF-ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL 430 (489)
T ss_pred HHHHHHHHHHHHHh-hcC--CC-CccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 66665443221110 000 00 112344455555555555443 35555667778999999999999999999999999
Q ss_pred HHHHhHHH
Q 040949 428 IAQAFLSM 435 (490)
Q Consensus 428 ~~~~~~~~ 435 (490)
+..+....
T Consensus 431 g~~l~~~~ 438 (489)
T PRK10207 431 GGYVATFT 438 (489)
T ss_pred HHHHHHHh
Confidence 98777544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=223.71 Aligned_cols=280 Identities=15% Similarity=0.162 Sum_probs=202.2
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh--------------------
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL-------------------- 122 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------- 122 (490)
.++|+++.++.|++.+.+.+++.++.++.|+++||+|||+++.++.++++++++++++.+
T Consensus 60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 455689999999999999999999999999999999999999999999999999998763
Q ss_pred -------------------------------hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHH
Q 040949 123 -------------------------------NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI 171 (490)
Q Consensus 123 -------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 171 (490)
.+..++++|+++|+|.+..++...+++.|++|+++|+++++++..+..+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 2456788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC-C------------------C-chHHHHHhhHHHHHHHHHHhhcccCc-hhHHhhcCChHHHHH
Q 040949 172 GIFLANLVNYGTAKLH-P------------------H-GWRVSLALAGVPAIFLFIGSIVITET-PTSLIERGNEVAGHK 230 (490)
Q Consensus 172 G~~i~~~~~~~~~~~~-~------------------~-~wr~~f~~~~~~~~~~~~~~~~~~es-p~~~~~~~~~~~a~~ 230 (490)
|.++|++++....... . . +||..|++.+++.++..+.++++|++ |+... +.+.++.++
T Consensus 220 G~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~-~~~~~~~~~ 298 (633)
T TIGR00805 220 GPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGK-RVNVDVHET 298 (633)
T ss_pred hhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCccc-ccchhhhhh
Confidence 9999999965543211 0 1 37788888888877766656667665 32100 000000000
Q ss_pred HHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCch
Q 040949 231 ALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDA 309 (490)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 309 (490)
. .... .+ ++... ......++.....++++++ +.++...+..+........+..|+|.++++ +|+++.+
T Consensus 299 ~--~~~~-~~-~~~~~---~~~~~~~~~~~~~~~Ll~n----~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ 367 (633)
T TIGR00805 299 E--KLEK-SE-DKSRK---KNSDITKDFPKIIKRLLCN----PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE 367 (633)
T ss_pred h--cccc-cc-cccch---hhhhhHHHHHHHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 0 0000 00 00000 0000011112234455555 556666666666777788899999999976 5999999
Q ss_pred hHHHHHHHhH-HHHHHHHhhhhhhcccC--chHHHHHhhHHHHHHHHH
Q 040949 310 SLLSSVITGT-VNVLSTLVSIYAVDKVG--RRKLLLQACVQMFISQST 354 (490)
Q Consensus 310 ~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~ 354 (490)
++.+.....+ +.+++.+++|+++||++ .|+.+..+.....++.+.
T Consensus 368 ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 368 ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 9998877665 56889999999999988 456666666555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-24 Score=185.86 Aligned_cols=323 Identities=15% Similarity=0.138 Sum_probs=251.0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+...
T Consensus 39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHH
Confidence 56679999999999999999999999999999999999999999999999999999888 78889999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhc
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIER 222 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 222 (490)
...+.++.+.+| |+-+..++++....++|..+++.++.-..... .+||....+-++++++.++.++. ...|..
T Consensus 118 VLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlP--q~~r~~--- 190 (395)
T COG2807 118 VLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLP--QALREQ--- 190 (395)
T ss_pred HhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhh--hccccc---
Confidence 999999999997 56699999999999999999998854333322 48999999999988887766553 222100
Q ss_pred CChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 040949 223 GNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT 302 (490)
Q Consensus 223 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (490)
....+.+..+...++|+ +..|...+++..+...++....|+|.++.+
T Consensus 191 -----------------------------~~~~~~~~~~~~~vw~~----~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~ 237 (395)
T COG2807 191 -----------------------------AASIATKLVSVRKVWRS----PLAWQVTLFMGLQSLLYYIVIGWLPAILID 237 (395)
T ss_pred -----------------------------ccccccccccccccccC----chhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 00011112223345555 557777778888888899999999999999
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc-CchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV-GRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
.|+|+.++|.+.+...+..++.++....+.+|. ++|........++.++...+.+. +....+..
T Consensus 238 ~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~------------P~~~~~lw--- 302 (395)
T COG2807 238 RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA------------PGQLPILW--- 302 (395)
T ss_pred cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh------------hhhHHHHH---
Confidence 999999999999999999999999999999965 56666666666676666666542 22222222
Q ss_pred HHHHHHHhhccccccccccccc-cCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSE-TFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
..+++.+.+.. .|+....+.. .-.++..+.-+|+.+.++++-...+|.++|++.|..|.+
T Consensus 303 ~~llG~G~G~~-F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 303 ALLLGLGQGGA-FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHhCccchH-HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 23344443322 3443333333 444566788899999999999999999999999999854
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-23 Score=202.64 Aligned_cols=384 Identities=11% Similarity=0.043 Sum_probs=236.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
+|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 68899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCc---cchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhccc----Cchh
Q 040949 145 VPLFLSEIAPVQH---RGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVIT----ETPT 217 (490)
Q Consensus 145 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----esp~ 217 (490)
..++++|++|+++ |++++++++.+.++|.++||.++ ....+..+||+.|.+.++..++..+...+.+ +.|+
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~--g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA--GVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH--HHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 9999999998764 88899999999999999999994 4444557999999987765554433333332 2221
Q ss_pred HHhhcCChHHHHHHHHH----------------hhCchhhHHHHH-----HHHHHHHHHhhcccchHHhcccCCCchHHH
Q 040949 218 SLIERGNEVAGHKALKK----------------IRGVEDVNAEYE-----QIKLASDIARQVKHPFKELMKRSSMPPLII 276 (490)
Q Consensus 218 ~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (490)
. ..+.+.++.+..... ..+....+.-.. ..........+.+ ..+.-++ +...+.
T Consensus 201 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~l 275 (475)
T TIGR00924 201 V-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPR--LDAVARN--KMYAYI 275 (475)
T ss_pred C-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHh--HHHHHH
Confidence 0 000001110000000 000000000000 0000000000000 0011011 111223
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCc----hhHHHHHHHhHHHHHHHHhhhh----hhcc-cCchHHH--HHh
Q 040949 277 GVLLQVFQQFTGINAIMFYAPVLFQT-VGFKND----ASLLSSVITGTVNVLSTLVSIY----AVDK-VGRRKLL--LQA 344 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~g~----l~d~-~g~r~~~--~~~ 344 (490)
.+++........+.......+.+.++ .+.+.. ..+.+.+...+..++..++..+ +.|| .+.+... ..+
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 33333333333444545545555544 233221 2567777777777777766554 3443 2223333 566
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHH
Q 040949 345 CVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFF 424 (490)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 424 (490)
.++.++++..+.+.... . +.....+.++.+....+.+.+-. ...|....+..+..|++.||+.+|+......+|
T Consensus 356 ~~l~~~~~~~~~~~~~~--~---~~~~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g 429 (475)
T TIGR00924 356 MLFCGASFLTFAASIWF--A---DAGGLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMG 429 (475)
T ss_pred HHHHHHHHHHHHHHHhh--c---CCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 66666666555432110 0 00012355555666666665544 446777888899999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhhhHH-HHHHHHHHHHHHHHHHhhc
Q 040949 425 TFLIAQAFLSMMCHMRAYI-FFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 462 (490)
..+++.+.....+..++.. +...+.++.+++++..+..
T Consensus 430 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 430 SLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887766554433 3333344444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=200.07 Aligned_cols=349 Identities=11% Similarity=0.099 Sum_probs=227.2
Q ss_pred ccccCCCchH-HHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 040949 63 DNYCKYDNQI-LQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 63 ~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (490)
.+++|+|.++ .|.+.++++.+|++++++.|+++||+|.|+++.++++.+++.+++.++++++..+.+.|++.|++.|..
T Consensus 53 ~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 53 LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhh---HHHHHHHHHHhhcccCchhH
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALA---GVPAIFLFIGSIVITETPTS 218 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~---~~~~~~~~~~~~~~~esp~~ 218 (490)
. +...++..|+|+++|+++.++..++..+|.+++++++.. ....|||+-+.+. .....+.++..+++|..+|.
T Consensus 133 ~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql---l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~s 208 (511)
T TIGR00806 133 I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL---LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRS 208 (511)
T ss_pred H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 9 999999999999999999999999999999999999655 3356898766543 33333445666788866665
Q ss_pred HhhcCChHHHHHHHHHhhCchhhHH--HHHHHH-HHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 219 LIERGNEVAGHKALKKIRGVEDVNA--EYEQIK-LASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
+.-+++.+.......+.....+.+. ..+..+ .....-+.-...+++..++ +.++...+-+.....++..+..|
T Consensus 209 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n----~~vl~WSlWwa~a~~g~~qv~~Y 284 (511)
T TIGR00806 209 LFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN----PQLLLWSLWWVFNSAGYYLITYY 284 (511)
T ss_pred hhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC----cchhhhhHHHHHHhhHHHHHHHH
Confidence 4433322110000000000000000 000000 0000001111223333333 33444444445555567778888
Q ss_pred HHHHHHHcCCC-CchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchh
Q 040949 296 APVLFQTVGFK-NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQ 374 (490)
Q Consensus 296 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (490)
...+-++..-+ ....|..-++..+.+.+..+..|++-.+..+-..+..+.....-+.+++.. . ...+
T Consensus 285 ~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m-~-----------~t~~ 352 (511)
T TIGR00806 285 VHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWM-S-----------QSHD 352 (511)
T ss_pred HHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhh-h-----------cccc
Confidence 77777766332 235566777777778888888898855553322232222222222221111 1 3456
Q ss_pred hHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 375 AGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
.|...+...++...+.+. .++...-+++....+.-|...|+.+.+..+-..+...+.
T Consensus 353 Iw~~Y~~yvlf~~~y~fl-itia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 353 IWVLYVTYVLFRGIYQFL-VPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 777777777777777655 334444445556656668888888777766665554433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-23 Score=197.35 Aligned_cols=348 Identities=15% Similarity=0.139 Sum_probs=220.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Q 040949 70 NQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFL 149 (490)
Q Consensus 70 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 149 (490)
....+|+.+.+.++.+++.++.|+++|.+|||.+++.+.++..+|+++++.++|...++++..+.|+|.|... .....+
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~i 155 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAI 155 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999999987665 456668
Q ss_pred hhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHH
Q 040949 150 SEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGH 229 (490)
Q Consensus 150 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~ 229 (490)
+|..|.|.|....++...........++.++... ..+.+|||.|++.++...+.++..++....|++-..++++...+
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~--~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~ 233 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLF--AAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKR 233 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh--ccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHH
Confidence 9999999999888777766666666677774332 33469999999988876665444333223333322222221122
Q ss_pred HHHHHhhCch-------------------hhHHHHHH------HH-------H--HHHHHhhcccc--hHHhcccCCCch
Q 040949 230 KALKKIRGVE-------------------DVNAEYEQ------IK-------L--ASDIARQVKHP--FKELMKRSSMPP 273 (490)
Q Consensus 230 ~~~~~~~~~~-------------------~~~~~~~~------~~-------~--~~~~~~~~~~~--~~~~~~~~~~~~ 273 (490)
+.+++++-.. ....+++. .. . --+.....+.+ -.+++|++ |
T Consensus 234 ~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~---r 310 (599)
T PF06609_consen 234 EQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR---R 310 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc---h
Confidence 2233322110 00000000 00 0 00101111222 22344432 3
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCC---chhHHHHHHHhHHHHHHHHhhhhhhcccCch-HHHHHhhHHH
Q 040949 274 LIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKN---DASLLSSVITGTVNVLSTLVSIYAVDKVGRR-KLLLQACVQM 348 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-~~~~~~~~~~ 348 (490)
.+...++..+.....++....+.|..... ++-++ ...++.....+++...|.++.+.+..+++|- +.++.+..++
T Consensus 311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 34444444444444455555566665543 34444 2567777888888889999899999888764 4445666555
Q ss_pred HHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHH
Q 040949 349 FISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLI 428 (490)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 428 (490)
++++.+++.. ..++....+....+.+.+.+....+ ....++-..|++.-+++.|+..+.+.+|+.++
T Consensus 391 ta~~Gama~~------------~~~n~~~~i~~~~l~g~giG~~~~~-~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg 457 (599)
T PF06609_consen 391 TAFCGAMAAV------------RPDNKNAAIAFLVLAGFGIGGILVP-AIVIAQLIVPDEDIGTATGLTGSIRSIGGSIG 457 (599)
T ss_pred HHHHHHHHHc------------cCCCcchHHHHHHHHHHhHHHHHHH-HHHeeEeeeCchHHHHHHHHHHHHHHHhhHHH
Confidence 5544443321 1122222233344444444433332 23444567899999999999999999999999
Q ss_pred HHHhHHHH
Q 040949 429 AQAFLSMM 436 (490)
Q Consensus 429 ~~~~~~~~ 436 (490)
..++..+.
T Consensus 458 ~aIy~~I~ 465 (599)
T PF06609_consen 458 YAIYNAIF 465 (599)
T ss_pred HHHHHHHH
Confidence 88886654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=199.12 Aligned_cols=343 Identities=7% Similarity=-0.059 Sum_probs=218.1
Q ss_pred CCCchHHHHH--HHHHHHHHHHHHhhh-hhhhhhhcchhHHHHHHHHH-HHHHHHHh---hhhh-HHHHHHHHHHhhhhh
Q 040949 67 KYDNQILQLF--TSSLYLAALFASFVA-SKVCTKFGRKPTILVASSFF-LAGAGISS---GALN-IWMLIIGRILLGIGV 138 (490)
Q Consensus 67 ~~s~~~~g~~--~s~~~~~~~i~~~~~-G~l~dr~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~ 138 (490)
|.|.+++|.+ .+.+.+...+.++++ ++..||+||||..++...+. ++.....+ ...+ ..+++..-++.++..
T Consensus 32 g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
T TIGR02718 32 GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLAS 111 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 7899999997 467788888888888 45799999999875555332 22222222 2222 334455566677778
Q ss_pred hhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhH
Q 040949 139 GFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTS 218 (490)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 218 (490)
+...+...++..|..++++++...+....+..+|.++|+.. .....+..|||..|++.+++.++..+..++++|+++
T Consensus 112 a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~--~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~- 188 (390)
T TIGR02718 112 ATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG--TLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV- 188 (390)
T ss_pred HHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-
Confidence 88888888899999998888999999998889999999876 444445579999999999887776555555544321
Q ss_pred HhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHH
Q 040949 219 LIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPV 298 (490)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
++++.+ ++...+.++.+|++..+.... ..+...........+.+.
T Consensus 189 --~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~----~~~l~~~~~~~~~~~~~~ 233 (390)
T TIGR02718 189 --ASPEAP-----------------------------LARRASLFRFFRRPLAWSLLA----LALLSAMTAVSGFGLSKL 233 (390)
T ss_pred --Cccccc-----------------------------hhhHHHHHHHHcCcCHHHHHH----HHHHHHHHHHHHHHHhhH
Confidence 000000 000112445565544322222 222222333445556777
Q ss_pred HHHHcCCCCchhHHHHHHHhH-HHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHH
Q 040949 299 LFQTVGFKNDASLLSSVITGT-VNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGF 377 (490)
Q Consensus 299 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (490)
++++.|+++++.+......+. ..+++.++.|++.||+|+|+.+..+..+..+.......... .. .......
T Consensus 234 ~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~ 305 (390)
T TIGR02718 234 YLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAA--FW------LAPGIAV 305 (390)
T ss_pred HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--cc------cCCcHHH
Confidence 888899999999998887764 56677889999999999999887766554333222211110 00 0011111
Q ss_pred HHHHHHHHHHHhhccccccccccccccCCc-cchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Q 040949 378 VVFLVCLFVMAFAWSWGPLGWLIPSETFPL-ETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGL 456 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (490)
......+.....+.. .+.......+..++ +.+++..++.+....++..++|.+.|.+.|..|+...+..+.++.+.++
T Consensus 306 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 306 AWSCSAFGSLITGIT-SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 122212212222222 22223333455554 8899999999999999999999999999998887555555554444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=201.11 Aligned_cols=379 Identities=13% Similarity=0.122 Sum_probs=243.2
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA------LNIWMLIIGRILLGI 136 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~ 136 (490)
.+++|+|..+++++.++. ..+..++++.|++.||+|||+++.++.+++++++++++++ ++++.+++.|++.|+
T Consensus 54 ~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~ 132 (591)
T PTZ00207 54 QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL 132 (591)
T ss_pred HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 345689999999998874 4556788889999999999999999999999999999997 689999999999999
Q ss_pred hhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcc--c
Q 040949 137 GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVI--T 213 (490)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~--~ 213 (490)
|.+...+.....+.+|+| ++||++.++...+.++|.++.+.+...... .+|+..|++.+++.++..++ ..++ |
T Consensus 133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS---DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 999999999999999996 789999999999999999865544322222 36898888888887776444 3333 4
Q ss_pred CchhHHhhcCChHHHHHHHHHhhCch--------------------------------------hhH-HH-----H----
Q 040949 214 ETPTSLIERGNEVAGHKALKKIRGVE--------------------------------------DVN-AE-----Y---- 245 (490)
Q Consensus 214 esp~~~~~~~~~~~a~~~~~~~~~~~--------------------------------------~~~-~~-----~---- 245 (490)
+.|++..++++.+++++..++..+.. +.. .. .
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll 288 (591)
T PTZ00207 209 PFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTV 288 (591)
T ss_pred cchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 44555444433333333222111100 000 00 0
Q ss_pred ---------------------HH-HHHHHH------HHh--------h-----cccchHHhcccCCCchHHHHHHHHHHH
Q 040949 246 ---------------------EQ-IKLASD------IAR--------Q-----VKHPFKELMKRSSMPPLIIGVLLQVFQ 284 (490)
Q Consensus 246 ---------------------~~-~~~~~~------~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (490)
+. ..+..+ +++ + ...++.+.++ +.-+|++.+.+++
T Consensus 289 ~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~----~~d~Wll~~~~~c 364 (591)
T PTZ00207 289 IFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLK----TARLWCLLWSIFC 364 (591)
T ss_pred HHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHh----chhHHHHHHHHHH
Confidence 00 000000 000 0 0012222222 3557888888888
Q ss_pred HhhchhhHHHhHHHHHHHc-CCCCch--hHHHHHHHhHHHHHHHHhhhhhhcccCch--------HHHHHhhHHHHHHHH
Q 040949 285 QFTGINAIMFYAPVLFQTV-GFKNDA--SLLSSVITGTVNVLSTLVSIYAVDKVGRR--------KLLLQACVQMFISQS 353 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--------~~~~~~~~~~~~~~~ 353 (490)
..........-+.++.+.. |.+.+. ...+.++.++++.+|++..|.+.....+| .........+.++.+
T Consensus 365 g~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~l 444 (591)
T PTZ00207 365 CVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITML 444 (591)
T ss_pred hhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHH
Confidence 8877777777888888888 773333 22367888999999999999887222222 122222222333333
Q ss_pred HHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHH-HHHh
Q 040949 354 TIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLI-AQAF 432 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~ 432 (490)
++.... + ...+.+..++.+.+++..+ ++....++|+|. ++-|+-+-+.....-+|..+. ..++
T Consensus 445 ll~~~~-----------p---~~~L~~~~~lvg~~~G~~~-~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~ 508 (591)
T PTZ00207 445 TLFLTL-----------P---KAALPLPYFIAAFANGFMA-ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY 508 (591)
T ss_pred HHHHHC-----------C---ccHhHHHHHHHHHHhhHhH-HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence 333311 1 1234455555566655443 455566799999 888888888777777777766 5677
Q ss_pred HHHHHhhh--------------hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040949 433 LSMMCHMR--------------AYIFFFFAGWILVMGLFALFLLPETK 466 (490)
Q Consensus 433 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (490)
|.++|+.. ...+++.++++.+..+....+..++|
T Consensus 509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 88877542 12455555666655555444444443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-21 Score=182.54 Aligned_cols=379 Identities=13% Similarity=0.105 Sum_probs=244.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhh----hhcchhHHHHH-HHHHHHHHHHHhhhhhHH---------------
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCT----KFGRKPTILVA-SSFFLAGAGISSGALNIW--------------- 125 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~--------------- 125 (490)
+|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .....++..+.+++++.+
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 3789999999999999999999999999999 59999998874 666667777777776643
Q ss_pred --HHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCcc--chHHhHHHHHHHHHHHHHHHHHHHhcccC-------C------
Q 040949 126 --MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHR--GAVNILFQLFVTIGIFLANLVNYGTAKLH-------P------ 188 (490)
Q Consensus 126 --~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~~~~~~~~~~-------~------ 188 (490)
.++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.+++.....+ .
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 233333445557888888899999999998865 57999999999999999999865431111 0
Q ss_pred CchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcc
Q 040949 189 HGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMK 267 (490)
Q Consensus 189 ~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (490)
.+.|..|++.++..++..+. .+..+|.|... .++.+++ +.++ .++.+.+..++++++
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~------~~~~---------------~~~~~~~~~~~~i~~ 251 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS------EAAP---------------PSKHGEEAFFGELFG 251 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh------hccc---------------ccccchhhhHHHHHH
Confidence 26789999988877776444 55688876211 0000000 0000 000001122344443
Q ss_pred c-CCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-c-CCCCc------h----hHHHHHHHhHHHHHHHHhhhhhhcc
Q 040949 268 R-SSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-V-GFKND------A----SLLSSVITGTVNVLSTLVSIYAVDK 334 (490)
Q Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~------~----~~~~~~~~~~~~~~~~~~~g~l~d~ 334 (490)
. +..++.++.+++..++.+.+.+.+..|.+.+..+ . +-++. + ..+......+...+.+++..++.+|
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3345667777777777777788888887777743 2 32221 1 1223344445555666778888999
Q ss_pred cCc-hHHHHHhhHHHHHHHHHHHHHHHHhhc--c---ccCcc-cc-hhhHHHHHHHHHHHHHhhccccccccccccccCC
Q 040949 335 VGR-RKLLLQACVQMFISQSTIGGMLLVHLK--A---TSNTL-TT-TQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFP 406 (490)
Q Consensus 335 ~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 406 (490)
+|+ |+....+.++.++++....+....... . ..... +. ...+..+....+.+..+.. ...++++++++..|
T Consensus 332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~ 410 (477)
T TIGR01301 332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSS 410 (477)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHcc
Confidence 985 666677777777777666543311000 0 00000 00 0124455555555555553 35677888889888
Q ss_pred c--cchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040949 407 L--ETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRA---YIFFFFAGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 407 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
+ +..|..+|+.|.+..+...+.....|.+.+..+. ..+.+-++..++.++...+.+|+++.
T Consensus 411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5 4559999999999999999999888886666652 23333444445555666677777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=189.19 Aligned_cols=335 Identities=13% Similarity=0.037 Sum_probs=212.2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhh----hhcc-hhHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCT----KFGR-KPTILVASSFFLAGAGISSGAL------NIWMLIIGRILL 134 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~ 134 (490)
+|++..++|.+..+..+..++..|+.|.++| |+|| |+.++.+.+..+++..++...+ .+..+++.-++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999 6699 6667778888888766664433 244566677788
Q ss_pred hhhhhhhhhhHHHHhhhcC-CCCccchHHhHHHHHHHHHHHHHHHHHHHh-----cccCCCchHHHHHhhHHHHHHHHHH
Q 040949 135 GIGVGFGNEAVPLFLSEIA-PVQHRGAVNILFQLFVTIGIFLANLVNYGT-----AKLHPHGWRVSLALAGVPAIFLFIG 208 (490)
Q Consensus 135 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~-----~~~~~~~wr~~f~~~~~~~~~~~~~ 208 (490)
+++.....+...++..|.. ++++|.+..++-..+.++|..+.+.+.... ...+..+|+....+.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999 589999999987777777755554442211 1112246888877777776665443
Q ss_pred h-hcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhh
Q 040949 209 S-IVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFT 287 (490)
Q Consensus 209 ~-~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (490)
. +..+|.++. ++ . +.+++++.++++.++...+++.+..++...+....
T Consensus 197 ~~~~~~e~~~~---~~-~---------------------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~ 245 (473)
T PRK10429 197 TLRNVHEVYSS---DN-Q---------------------------VSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNI 245 (473)
T ss_pred HHcCceecCCc---cc-c---------------------------ccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3 346664310 00 0 00001122233333221111333333333333333
Q ss_pred chhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 288 GINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
.......+.+++.+....+....+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~------ 319 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA------ 319 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 34444445555555443344555666666678888999999999999999999887776655554443321100
Q ss_pred CcccchhhHHHHHHHHHHHHHhhccccccccccccccCC-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
...+.+..++...+.+.+.+.. .+..+++.+|..+ .+..|...|.......++..+++.+.|.+.+..|
T Consensus 320 ---~~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 320 ---APHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred ---CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1222333333334444443322 3455666778755 3334668899999999999999999999987654
Q ss_pred h
Q 040949 441 A 441 (490)
Q Consensus 441 ~ 441 (490)
+
T Consensus 396 y 396 (473)
T PRK10429 396 Y 396 (473)
T ss_pred C
Confidence 3
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=177.83 Aligned_cols=326 Identities=15% Similarity=0.103 Sum_probs=228.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhc-chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFG-RKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
|+|..|+|.+.+...+...++++++|.++||++ +|+.+.+..++.++........++++.+++.-++..+......|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 789999999999999999999999999999986 5778878888888877777888899999988888888888888999
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHH--hcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcC
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYG--TAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERG 223 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~--~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~ 223 (490)
.++..+... ++++-.+-.....++|.+++...... ....+..+..+.+++.+...++.....+.+|+.|+. ++
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~~ 187 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---RS 187 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---cc
Confidence 998888875 34455566666777777666433101 111111233345666666555555556677887620 00
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV 303 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (490)
.+ + +.++....+..+++|++. ...+.+..+...........|.+.++++.
T Consensus 188 ~~-~-------------------------~~~~~~~~~~~~llk~~~----~~~Fll~~~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 188 AK-E-------------------------SVKKLLGLDALKLLKNPR----FLVFLLAAFLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred cC-C-------------------------CcccccchHHHHHhcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 0 000111112235666543 33344444444445667778888899998
Q ss_pred C-CCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH-
Q 040949 304 G-FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL- 381 (490)
Q Consensus 304 g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 381 (490)
| .+....+...++..+++++.-...+++.+|+|.|+++..+....++=..+++.. .++.+.....
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~-------------~~~~~~~~~~~ 304 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF-------------SDPWPFIVALQ 304 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh-------------cCCcHHHHHHH
Confidence 7 777888888888889999999999999999999999999988887777666652 1122222221
Q ss_pred ---HHHHHHHhhccccccccccccccCCccchhhHHHHHHHH-HHHHHHHHHHHhHHHHHhhhh
Q 040949 382 ---VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSS-NMFFTFLIAQAFLSMMCHMRA 441 (490)
Q Consensus 382 ---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 441 (490)
..+.+..++.. ......++.+..|++.|+++.++.+.. ..+|..++..+.|++.|+.+.
T Consensus 305 ~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 305 LLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 22345554433 234456778999999999999998876 578999999999999998763
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=187.49 Aligned_cols=351 Identities=10% Similarity=0.021 Sum_probs=205.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSGAL-NIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~ 142 (490)
++|+|.++.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++++ +.+.+.++|+++|++.|...
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~ 130 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFK 130 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhccc
Confidence 458899999999988887777777899999999 5999999999999999999998874 56677788999999999999
Q ss_pred hhHHHHhhhcCCCCc--cchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhh----cccCch
Q 040949 143 EAVPLFLSEIAPVQH--RGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSI----VITETP 216 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~----~~~esp 216 (490)
+...+++.|++|+++ |..++++++.+.++|..+||.++ ....+..|||+.|++.++..++.++... .++|.+
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~--g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~ 208 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT--PWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYG 208 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCC
Confidence 999999999998654 45688999999999999999994 4445667999999987765444332222 233321
Q ss_pred hHHhhcCChHHHHHHHH------------Hh--hCchhhHHHHHH--HH-HHHHHHhhcccchHHhcccCCCchHHHHHH
Q 040949 217 TSLIERGNEVAGHKALK------------KI--RGVEDVNAEYEQ--IK-LASDIARQVKHPFKELMKRSSMPPLIIGVL 279 (490)
Q Consensus 217 ~~~~~~~~~~~a~~~~~------------~~--~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (490)
+. .++++.+.. +... .. ...+..+....- .. .........+. .+ ..+++....+.
T Consensus 209 ~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~ 280 (500)
T PRK09584 209 SK-PDFEPINYR-KLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAM--KG----AARRKMIVAFI 280 (500)
T ss_pred CC-CCccccchh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhc--CH----HHHHHHHHHHH
Confidence 10 000001100 0000 00 000000000000 00 00000000000 00 01112222211
Q ss_pred HHHHHHhhchhhHHHhHHHHHHH---cCCCC------chhHHHHHHHhHHHHHHHHhh----hhhhcccCchHHHHHhhH
Q 040949 280 LQVFQQFTGINAIMFYAPVLFQT---VGFKN------DASLLSSVITGTVNVLSTLVS----IYAVDKVGRRKLLLQACV 346 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~---~g~~~------~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~r~~~~~~~~ 346 (490)
+. .....++......|..+.. .+.+. ...+.+.+...+..++..++. +++.||.+.++.+..+..
T Consensus 281 ~~--~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~ 358 (500)
T PRK09584 281 LM--LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMV 358 (500)
T ss_pred HH--HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHH
Confidence 11 1111222333333333221 11111 124455566665555665555 555556666677778888
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHH
Q 040949 347 QMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTF 426 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 426 (490)
+.+++++.+...... .+.....+.++.+....+.+.+- ....|....++.+..|++.||+++|.......++..
T Consensus 359 l~~l~f~~l~~~~~~-----~~~~~~vs~~~~~~~~~l~~~ge-~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~ 432 (500)
T PRK09584 359 LCSGAFLVLPLGAKF-----ANDAGIVSVNWLIASYGLQSIGE-LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL 432 (500)
T ss_pred HHHHHHHHHHHHHHh-----cCCCCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 888887776543210 00001122334444455554443 344677777888999999999999988777777777
Q ss_pred HHHHHhH
Q 040949 427 LIAQAFL 433 (490)
Q Consensus 427 ~~~~~~~ 433 (490)
++..+.+
T Consensus 433 ~~g~~~~ 439 (500)
T PRK09584 433 IAGYVAN 439 (500)
T ss_pred HHHHHHH
Confidence 7766654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=185.53 Aligned_cols=328 Identities=14% Similarity=0.080 Sum_probs=207.2
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh----hcc-hhHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHH
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTK----FGR-KPTILVASSFFLAGAGISSGALN------IWMLIIGRIL 133 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 133 (490)
++|+|..++|.+.++..+..++..|+.|.++|| +|| |+.++.+.+..+++.++....++ .+++++..++
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 458999999999999999999999999999998 787 45566777777777766554432 4666777777
Q ss_pred hhhhhhhhhhhHHHHhhhcC-CCCccchHHhHHHHHHHHHHHHHHHHHHHhc--c---cCCCchHHHHHhhHHHHHHHHH
Q 040949 134 LGIGVGFGNEAVPLFLSEIA-PVQHRGAVNILFQLFVTIGIFLANLVNYGTA--K---LHPHGWRVSLALAGVPAIFLFI 207 (490)
Q Consensus 134 ~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~--~---~~~~~wr~~f~~~~~~~~~~~~ 207 (490)
.+.+.........++..|+. ++++|.+..++-..+..+|..+++.+..... . ....+|+..+.+.++++++..+
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 78777777777889999998 5688999888888888888777765422111 1 1235899999888887766644
Q ss_pred Hhh-cccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHh
Q 040949 208 GSI-VITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQF 286 (490)
Q Consensus 208 ~~~-~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (490)
..+ ..+|.++. ++ +++.+.+...++.+|++..+......++...
T Consensus 199 ~~~~~~~e~~~~--~~------------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~--- 243 (444)
T PRK09669 199 CCFFMTKERYTP--EV------------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLT--- 243 (444)
T ss_pred HHhCCeEEecCC--CC------------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHH---
Confidence 433 34543210 00 0000112234455555443332222222111
Q ss_pred hchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 287 TGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
.........+++.+..-.+++..+.......+..+++.++.+++.||+|+|+....+..+..+....+...
T Consensus 244 -~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-------- 314 (444)
T PRK09669 244 -AVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-------- 314 (444)
T ss_pred -HHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 22222223333333331122333444455557777888889999999999998887765554433222211
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCC-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
+.++.+...+...+.+.+.+ ...+..+++.+|..+ .+..|...|..+....+|..+++.+.|.+.+..
T Consensus 315 ----~~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 315 ----PPSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred ----CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22333334444444455444 335666777777775 233467788889999999999999999998866
Q ss_pred hh
Q 040949 440 RA 441 (490)
Q Consensus 440 ~~ 441 (490)
|+
T Consensus 390 Gy 391 (444)
T PRK09669 390 DY 391 (444)
T ss_pred CC
Confidence 53
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=187.31 Aligned_cols=373 Identities=12% Similarity=-0.008 Sum_probs=229.7
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhc-----chhHHHHHHHHHH-HHHHHHhhhhhHHHHH-HHHHHhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFG-----RKPTILVASSFFL-AGAGISSGALNIWMLI-IGRILLGIG 137 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~l~-~~r~l~G~~ 137 (490)
++|+|.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++..... +..++.+++
T Consensus 55 ~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 133 (468)
T TIGR00788 55 DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALA 133 (468)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 3589999999999999999999666 999999998 7888888877763 4444444445544444 489999999
Q ss_pred hhhhhhhHHHHhhhcCCCCccchHHhHH---HHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccC
Q 040949 138 VGFGNEAVPLFLSEIAPVQHRGAVNILF---QLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITE 214 (490)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 214 (490)
.+...++..++..|..+ +++....+.. ....++|.++++.+++ ...+..+||..|++.+.+.++..+...+++|
T Consensus 134 ~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G--~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E 210 (468)
T TIGR00788 134 KALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG--PLLDKTLTRILFLITAALLLLQLFVSNLSKE 210 (468)
T ss_pred HHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH--HHHHhcCcchHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998 5554433333 3334579999988844 4445578999999988887777656677788
Q ss_pred chhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHH-HhhchhhHH
Q 040949 215 TPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQ-QFTGINAIM 293 (490)
Q Consensus 215 sp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 293 (490)
++....++.+.++. ....... .. ..+..++...+..+.+++ +.++...+..+. .........
T Consensus 211 ~~~~~~~~~~~~~~---------~~~~~~~-~~---~~~~~~~~~~~l~~~l~~----~~i~~~l~fifl~~~~~~~~~~ 273 (468)
T TIGR00788 211 RRAFVRPRIGTYLE---------MNMALLT-LG---VLANVKVQILGLRGAIQL----LEIAKPLIFIFLSYANLPGASG 273 (468)
T ss_pred ccccccccccccch---------hhhhhhh-hh---HHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHhhcCCCCc
Confidence 63110001000000 0000000 00 000000101112223333 222222222221 111111111
Q ss_pred -HhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccc
Q 040949 294 -FYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTT 372 (490)
Q Consensus 294 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (490)
.+. ...+..|+++.+.|......+++.+++..+.+++.+|++.|+.+..+.++..++.+......... ......
T Consensus 274 ~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~----~~~~gi 348 (468)
T TIGR00788 274 SVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRW----NLAFGI 348 (468)
T ss_pred eeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecc----ccccCC
Confidence 111 11135699999999999999999999999999999999999999888877776654432111000 000000
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-----hHHHHHH
Q 040949 373 TQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-----AYIFFFF 447 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 447 (490)
.+.+.......+...+.+....+. ..++.+..|++.+|+..++.++..++|..+++.+.+.+.+..| +...+..
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~ 427 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence 112233333444445555554554 5666899999999999999999999999999999999988876 4333333
Q ss_pred HHHH---HHHHHHHHhhccc
Q 040949 448 AGWI---LVMGLFALFLLPE 464 (490)
Q Consensus 448 ~~~~---~~~~~~~~~~~~~ 464 (490)
..++ .+..+....++|+
T Consensus 428 i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 428 ILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 3323 3333334446675
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-19 Score=171.61 Aligned_cols=365 Identities=15% Similarity=0.111 Sum_probs=246.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHH-HHHHHHHHHHHHhhh--hhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 70 NQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILV-ASSFFLAGAGISSGA--LNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 70 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
.+..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++.+..+. .+++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999998766554 455555666666663 3455555566667778888888999
Q ss_pred HHhhhcCCCCcc--------------------------chHHhHHHHHHHHHHHHHHHHHHHhcccCC------CchHHH
Q 040949 147 LFLSEIAPVQHR--------------------------GAVNILFQLFVTIGIFLANLVNYGTAKLHP------HGWRVS 194 (490)
Q Consensus 147 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~------~~wr~~ 194 (490)
+++.|..+++++ ++..+.-.....+|.++.-++......... .+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 899999888888998888777544332221 346888
Q ss_pred HHhhHHHHHHH-HHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCch
Q 040949 195 LALAGVPAIFL-FIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPP 273 (490)
Q Consensus 195 f~~~~~~~~~~-~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (490)
+.+.++..++. +...+++||.|+....++...... ..-++....++++ ++.|
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-----------------------~g~~~l~~t~k~~----~~~~ 281 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-----------------------FGFKRLWRTFKEI----RKLR 281 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-----------------------HHHHHHHHHHHHH----HhCh
Confidence 88888876665 455667888764200000000000 0001111222332 2234
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCch--HHHHHhhHHHHH
Q 040949 274 LIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRR--KLLLQACVQMFI 350 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~~~~~~~~~ 350 (490)
....+++..+...-+...+......+.+ ..|++..+.........+.+++|.++.+++.||+|.| +.+..+.....+
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 5566666777666677777777777876 5699999999999999999999999999999999998 666655554422
Q ss_pred HHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 040949 351 SQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQ 430 (490)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 430 (490)
..+.-.+-.... .....+.+...+...+.+.. ..+..+..-++.+|+.|+++.+...|+....+...+.++|.
T Consensus 362 i~~~g~~G~~~~------~~g~~~~~~f~~~a~~~G~~-~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 362 IPLYGLFGFWPS------FFGLKSPWEFWVLAVLIGLF-MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHHHHHHhhhc------ccCcccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 222111100000 00112333333333333333 33556677788899999999999999999999999999999
Q ss_pred HhHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040949 431 AFLSMMCHMR-AYIFFFFAGWILVMGLFALFLLPETKGV 468 (490)
Q Consensus 431 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (490)
++|.+.+..+ ....+....+.++.+++++..++.+|++
T Consensus 435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 435 LFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9999999987 3444555555566666666666655544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=166.61 Aligned_cols=395 Identities=13% Similarity=0.102 Sum_probs=264.3
Q ss_pred ccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHh
Q 040949 10 KITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASF 89 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~ 89 (490)
|..+++|...++.++.++..+...--++++ ..+.+.|| + +....-|..-+|++.+....+
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~Y----------------g-s~~~~~wlsmIym~v~vp~gf 97 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSFY----------------G-SSSAADWLSMIYMVVSVPFGF 97 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHHh----------------c-chHHHHHHHHHHHHHHHHHhh
Confidence 566788988888888888777766555433 35555553 4 666778999999999999999
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh------hhHH--HHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchH
Q 040949 90 VASKVCTKFGRKPTILVASSFFLAGAGISSGA------LNIW--MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAV 161 (490)
Q Consensus 90 ~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 161 (490)
++-|+.|++|-|...+++..+.++++.+-..+ +.++ ....+..+.+.++-.....-.....-|++++||..+
T Consensus 98 ~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A 177 (480)
T KOG2563|consen 98 AAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIA 177 (480)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhh
Confidence 99999999999999999999999999987765 3445 777889999999888877778889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcccC----CCchHH--HHHhhHHHHHHHHHHh-hcccCchhHHhhcCChHHHHHHHHH
Q 040949 162 NILFQLFVTIGIFLANLVNYGTAKLH----PHGWRV--SLALAGVPAIFLFIGS-IVITETPTSLIERGNEVAGHKALKK 234 (490)
Q Consensus 162 ~~~~~~~~~~G~~i~~~~~~~~~~~~----~~~wr~--~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~a~~~~~~ 234 (490)
..+-..+..+|.+++.++........ +..|.. .|+..+.++.+.+++. +..++.|+.-+...
T Consensus 178 ~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s----------- 246 (480)
T KOG2563|consen 178 TVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS----------- 246 (480)
T ss_pred hhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh-----------
Confidence 99999999999999888754444333 356765 3554444443333332 22333331100000
Q ss_pred hhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHH
Q 040949 235 IRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSS 314 (490)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 314 (490)
. ....+.+...+.++.++++. +...++.+....+.++...+.+...+...|++...+|...
T Consensus 247 ------------~---~~~~~~~f~~si~~~~~n~~----F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig 307 (480)
T KOG2563|consen 247 ------------Q---AALQDASFPKSIKSCFKNRQ----FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIG 307 (480)
T ss_pred ------------H---hhhhcCcHHHHHHHHHcCcc----HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhH
Confidence 0 00001122345566666533 5555555555555566666665555555588878999999
Q ss_pred HHHhHHHHHHHHhhhhhhcccCchHHH-HHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccc
Q 040949 315 VITGTVNVLSTLVSIYAVDKVGRRKLL-LQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSW 393 (490)
Q Consensus 315 ~~~~~~~~~~~~~~g~l~d~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (490)
....+++++++.+.|.+.||.++-+.. ........++. +....... .....+++ ...+...+.++.+.
T Consensus 308 ~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~---------~~~~~viv-~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 308 ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLLTCTL---------FLGDSVIV-FTTCGLLGFFGTGY 376 (480)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhc---------cCCceEeh-hhhHHHHHHhhcCC
Confidence 999999999999999999998764443 33333322221 11111110 11222333 33333344456677
Q ss_pred cccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh----hHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 394 GPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR----AYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
.|+..-+..|..-|..-++..|+.+..+++.+.+-..+.+...+..+ +....+......+..+....+.++.
T Consensus 377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 88888888887766777899999999999999999999999888776 4444455444444444444444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=176.15 Aligned_cols=325 Identities=8% Similarity=0.028 Sum_probs=195.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh----cchhHH-HHHHHHHHHHHHHH-hhh----h--hHHHHHHHHHH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKF----GRKPTI-LVASSFFLAGAGIS-SGA----L--NIWMLIIGRIL 133 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~~~----~--~~~~l~~~r~l 133 (490)
+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+...+. ... + ..+.+++.-++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 478999999999999999999999999999986 777644 55655555444443 211 1 23344555677
Q ss_pred hhhhhhhhhhhHHHHhhhcCCC-CccchHHhHHHHH-----HHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH
Q 040949 134 LGIGVGFGNEAVPLFLSEIAPV-QHRGAVNILFQLF-----VTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI 207 (490)
Q Consensus 134 ~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 207 (490)
.+++.+...+...++..|..++ ++|.+..+.-..+ ..+|..++|.++.........+|.....+.++++++..+
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777754 6788876665543 335566667664321100011222222233333333322
Q ss_pred -HhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHh
Q 040949 208 -GSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQF 286 (490)
Q Consensus 208 -~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (490)
.....||+++. +. +++..+..++++++++. +....+..++..
T Consensus 199 ~~~~~~~e~~~~---~~------------------------------~~~~~~~~~~~l~~n~~----f~~~~~~~~~~~ 241 (448)
T PRK09848 199 ICFKSTRENVVR---IV------------------------------AQPSLKISLQTLKRNRP----LFMLCIGALCVL 241 (448)
T ss_pred HHHcCcEeccCC---Cc------------------------------cCCCHHHHHHHHhCCch----HHHHHHHHHHHH
Confidence 22335554310 00 00011122445555543 333333333333
Q ss_pred hchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcc
Q 040949 287 TGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (490)
..........|++.++. |.++...++......++.+++.++.+++.||+++|+.+..+..+..++.+.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------- 314 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------- 314 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 34445555667676654 7665555544444456678888999999999999999988887777666554421
Q ss_pred ccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCcc-------chhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040949 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLE-------TRTAGFAFAVSSNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
+..+.+.......+.+.+.+.. .+...+...|..|.+ .+|...|+.+....+|..+++.+.+.+.+.
T Consensus 315 -----~~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 315 -----SVWSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred -----CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123333333344444444433 344555666766543 458999999999999999999999988776
Q ss_pred hh
Q 040949 439 MR 440 (490)
Q Consensus 439 ~~ 440 (490)
.|
T Consensus 389 ~G 390 (448)
T PRK09848 389 SG 390 (448)
T ss_pred cC
Confidence 54
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=167.03 Aligned_cols=356 Identities=12% Similarity=0.047 Sum_probs=204.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKF-GRKPTILVASSFFLAGAGISSGAL-NIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.++.+..+ +...+.+...+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 478999999999999999999999999999999 999999999999999988776543 223344444455566777778
Q ss_pred hHHHHhhhcCCCC--ccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHH-h
Q 040949 144 AVPLFLSEIAPVQ--HRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSL-I 220 (490)
Q Consensus 144 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~-~ 220 (490)
...++++|.+|++ +|..++++.+.+.++|..++|.+ .....+..|||+.|.+.++..++.++..++..+..... .
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l--~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA--CGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH--HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 8889999999875 69999999999999999999999 44555567999999987664444333322221110000 0
Q ss_pred hcCChHHHHHHHHHhhC-------------chhhHHHHHH-HHHH---H------HHHhhcccchHHhcccCCCchHHHH
Q 040949 221 ERGNEVAGHKALKKIRG-------------VEDVNAEYEQ-IKLA---S------DIARQVKHPFKELMKRSSMPPLIIG 277 (490)
Q Consensus 221 ~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~-~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (490)
.+++..+.++....... .....++... .... . ..... +.+-.| +++-..+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e----r~r~~~~~~ 272 (493)
T PRK15462 198 VNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRK-AENQKQ----RKELGLIVT 272 (493)
T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHH----HhhHHHHHH
Confidence 00000000000000000 0000000000 0000 0 00000 000000 000111222
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHHHc------CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCc--h-----HHHHHh
Q 040949 278 VLLQVFQQFTGINAIMFYAPVLFQTV------GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGR--R-----KLLLQA 344 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--r-----~~~~~~ 344 (490)
+++.....+..+.....-+..+.++. |++ -..++..++..+..++..++..++-.|..| | .-...+
T Consensus 273 l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g 351 (493)
T PRK15462 273 LTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALG 351 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 22222222223333333334444332 332 234566777777777777777766555522 2 125566
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHH-HH
Q 040949 345 CVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSN-MF 423 (490)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~ 423 (490)
.++.+++++.+.+..... +.. ...+.++.+....+...+ .....|+..+.++++.|++.+|..+|...... .+
T Consensus 352 ~~~~g~~f~~l~~~~~~~----~~~-~~~s~~wl~~~~~~~t~g-El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~ 425 (493)
T PRK15462 352 LGLMSAGFCILTLSARWS----AMY-GHSSLPLMVLGLAVMGFA-ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI 425 (493)
T ss_pred HHHHHHHHHHHHHHHhhc----CCC-CCcCHHHHHHHHHHHHHH-HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 666666665554422110 000 113444555555555444 55678898999999999999999999986643 56
Q ss_pred HHHHHHHHhHHH
Q 040949 424 FTFLIAQAFLSM 435 (490)
Q Consensus 424 ~~~~~~~~~~~~ 435 (490)
+..++..+.+..
T Consensus 426 ~~~~~g~~~~~~ 437 (493)
T PRK15462 426 ANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHh
Confidence 666666655544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=165.65 Aligned_cols=361 Identities=13% Similarity=0.094 Sum_probs=226.6
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSG---ALNIWMLIIGRILLGIGV 138 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~ 138 (490)
+.+.+++.++..++.+.|.....+.+++.|++.|| +|.|..-++-+....++.++++. .+.+|.++++|++.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 44457788899999999999999999999999995 78887766666666677776654 689999999999999998
Q ss_pred hhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhH---HHHHHHHHHhhcccCc
Q 040949 139 GFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAG---VPAIFLFIGSIVITET 215 (490)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~---~~~~~~~~~~~~~~es 215 (490)
-..-.+-..+..-|+..|+.+.++|+..+...+|..+--.+...... .. .-++-.. .+++...+-......+
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~--~~---~~~~~~~ghT~LG~~l~~~~~tc~~s 225 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD--TM---GRMFPGVGHTLLGLWLCFEVKTCKQS 225 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH--HH---HHhcccchHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999998887765444211111 00 0000000 0000000000000000
Q ss_pred hhHHhhcCC-hHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHH
Q 040949 216 PTSLIERGN-EVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMF 294 (490)
Q Consensus 216 p~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
-.-....+- ++.|++.+ +.++....+.....+. ....+.+|......++.......+..
T Consensus 226 lical~lg~~D~rAeril-----------------h~e~g~~Ge~pkLtdv---~~f~ppfw~~~iicv~yyva~fPFi~ 285 (459)
T KOG4686|consen 226 LICALSLGLSDDRAERIL-----------------HLEEGFLGEEPKLTDV---NTFYPPFWVLVIICVLYYVAWFPFIT 285 (459)
T ss_pred HHHHHHhhhhhhHHHHHH-----------------hhhcCcccCCcccccc---cccCccHHHHHHHHHHHHHHHHHHhh
Confidence 000000000 00111111 1101000011111121 12224455555555565556677777
Q ss_pred hHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccch
Q 040949 295 YAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTT 373 (490)
Q Consensus 295 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (490)
..|.++++ +|+|+..++.+.+.......+..++.|.++||.|++-....+..+..+..-..... +..
T Consensus 286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F------------t~l 353 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF------------TFL 353 (459)
T ss_pred hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh------------hhc
Confidence 77888855 59999999999998888899999999999999999877766555444433222211 112
Q ss_pred hhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH----HHHHHHH
Q 040949 374 QAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY----IFFFFAG 449 (490)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 449 (490)
++ ...+.+.+..+.... ...|..++.++|++..|++.|++++..++|-.+.|.+.|.+.|..+.+ .+++...
T Consensus 354 sP---y~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 354 SP---YTSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred cH---HHHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 22 333444444444332 224566778899999999999999999999999999999999887733 4444444
Q ss_pred HHHHHHHHHHhhccc
Q 040949 450 WILVMGLFALFLLPE 464 (490)
Q Consensus 450 ~~~~~~~~~~~~~~~ 464 (490)
.+.+......+.+.+
T Consensus 430 ~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 430 LMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHHhheec
Confidence 444444444444433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=173.64 Aligned_cols=327 Identities=12% Similarity=0.140 Sum_probs=234.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhh----hhcchhH-HHHHHHHHHHHHHHHhhh-h-------hHHHHHHHHH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCT----KFGRKPT-ILVASSFFLAGAGISSGA-L-------NIWMLIIGRI 132 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~ 132 (490)
+++++..+|.+..+..+..++..|+.|.++| |+||||. +++|....+++.+++... + ....+.+.-+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 4789999999999999999999999999999 8997655 557888888888877765 4 2345677778
Q ss_pred HhhhhhhhhhhhHHHHhhhcCC-CCccchHHhHHHHHHHHHHHHHHHHHHHhccc---C-C-CchHHHHHhhHHHHHHHH
Q 040949 133 LLGIGVGFGNEAVPLFLSEIAP-VQHRGAVNILFQLFVTIGIFLANLVNYGTAKL---H-P-HGWRVSLALAGVPAIFLF 206 (490)
Q Consensus 133 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~---~-~-~~wr~~f~~~~~~~~~~~ 206 (490)
+..++.........++..|..+ +++|.+..+.-..+..+|..+...+....... + . .+|++..++.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999997 57899999999999988887555553222211 1 1 279999999988888775
Q ss_pred HH-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHH
Q 040949 207 IG-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQ 285 (490)
Q Consensus 207 ~~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (490)
+. ....+|+++ + .++++++.+.+..++++++++.. ....+..+..
T Consensus 192 ~i~~~~~ke~~~------~------------------------~~~~~~~~~~~~~~~~~~~nr~~----~~l~~~~~~~ 237 (428)
T PF13347_consen 192 LITFFFVKERSV------E------------------------VTEQEKKISLRDSLRSLFRNRPF----RILLLAFFLQ 237 (428)
T ss_pred hhhhheeeeccc------c------------------------ccccccccccccchhhhcccchH----HHHHHHHHHH
Confidence 54 445666210 0 00011111223445556655443 3333333434
Q ss_pred hhchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhc
Q 040949 286 FTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLK 364 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (490)
...........+++.+.. |.+ ...+.......+..+++.++.++++||+|+|+.+..+..+..++.+.+.+..
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----- 311 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG----- 311 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-----
Confidence 444455555666777665 544 5566777778888999999999999999999999999888888777665532
Q ss_pred cccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCc-------cchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040949 365 ATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPL-------ETRTAGFAFAVSSNMFFTFLIAQAFLSMMC 437 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (490)
..+.+..++...+.+.+.+.. ....+++.+|..+. +..|...|..+....++..+++.+.+.+.+
T Consensus 312 -------~~~~~~~~i~~~l~gi~~~~~-~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 312 -------PGSPWLVLILFILAGIGYGAF-FVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred -------hhhHHHHHHHHHHhHhhhccc-ccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 135555566666666665543 46667778888763 345889999999999999999999998887
Q ss_pred hhh
Q 040949 438 HMR 440 (490)
Q Consensus 438 ~~~ 440 (490)
..|
T Consensus 384 ~~G 386 (428)
T PF13347_consen 384 LVG 386 (428)
T ss_pred HhC
Confidence 654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=168.63 Aligned_cols=326 Identities=9% Similarity=0.005 Sum_probs=199.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh----hcch-hHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHH
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTK----FGRK-PTILVASSFFLAGAGISSGALN------IWMLIIGRIL 133 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 133 (490)
.+|+++..+|.+..+.-+.-++..|+.|.++|| +||| +.++++.+..+++.+++-..++ ...+.+.-++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 358899999999999999999999999999995 7986 5556677888887776655442 4556667777
Q ss_pred hhhhhhhhhhhHHHHhhhcCC-CCccchHHhHHHHHHHHHHHHHHHHHHHhcc-----cCCCchHHHHHhhHHHHHHHHH
Q 040949 134 LGIGVGFGNEAVPLFLSEIAP-VQHRGAVNILFQLFVTIGIFLANLVNYGTAK-----LHPHGWRVSLALAGVPAIFLFI 207 (490)
Q Consensus 134 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~ 207 (490)
..++.......-.++..|..+ +|||.+..++-..+..+|..+++.+...... .+..+|+....+.++++++...
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 888888888889999999997 7899999999999999988777666322111 1124788888777777666544
Q ss_pred Hhh-cccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHh
Q 040949 208 GSI-VITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQF 286 (490)
Q Consensus 208 ~~~-~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (490)
..+ ..+|.++. +. ++.+.++.++..++++.++.. ....+...
T Consensus 199 i~~~~~kE~~~~-----~~----------------------------~~~~~~~~l~~~~~Nk~~~~l----~~~~~~~~ 241 (460)
T PRK11462 199 FCFFTTKERVEA-----PP----------------------------TTTSMREDLRDIWQNDQWRIV----GLLTIFNI 241 (460)
T ss_pred HHHhcceeccCC-----Cc----------------------------cCCCHHHHHHHHhCChHHHHH----HHHHHHHH
Confidence 333 34443210 00 000011223344444332222 22222222
Q ss_pred hchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 287 TGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
...........++.+...-++...+.......++.+++.+++++++||+++|+....+..+..+....+.+.
T Consensus 242 ~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-------- 313 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-------- 313 (460)
T ss_pred HHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 222222222333333332223334455667778888999999999999999988765444333322222111
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCC-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
+..+........++.+.+.+ ...++.+.+.+|..+ .+..|...+.......++..+++.+.|.+.+..
T Consensus 314 ----~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 314 ----PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred ----chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11222222223333333322 233444555566554 223355567777889999999999999888764
Q ss_pred h
Q 040949 440 R 440 (490)
Q Consensus 440 ~ 440 (490)
|
T Consensus 389 G 389 (460)
T PRK11462 389 G 389 (460)
T ss_pred C
Confidence 3
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-19 Score=160.77 Aligned_cols=273 Identities=10% Similarity=0.024 Sum_probs=189.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccC-----------
Q 040949 119 SGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLH----------- 187 (490)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~----------- 187 (490)
+...+|+.++++-++.|.|.+...+..+.++++..++|++++.+++.+..+++|..++|.++.......
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 346789999999999999999999999999999999999999999999999999999999976544211
Q ss_pred ---CCchHHHHHhhHHHHHHHHHHhhc--ccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccch
Q 040949 188 ---PHGWRVSLALAGVPAIFLFIGSIV--ITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPF 262 (490)
Q Consensus 188 ---~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (490)
..+|+++|++.+.+.++..+.+.+ +||.++ + +.++ ..+++ ....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~-~~~~------------------------~~~~~--~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----A-DVAR------------------------VSSGD--TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----c-cccc------------------------ccccc--ccch
Confidence 147999999776665555444333 354321 0 0000 00000 0001
Q ss_pred HHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH---cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchH
Q 040949 263 KELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT---VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRK 339 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 339 (490)
++.++ ++..+...+..+++.........|.+.|+++ .|+++++++...+....+.++|+++.+++.||+++|+
T Consensus 134 ~~~~~----~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQ----FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 11222 2345556666777777788889999999964 3899999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHH
Q 040949 340 LLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVS 419 (490)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 419 (490)
.+..+..+..++.++... .+ . ........+.+.+.+.. .|...+...+..|++ .+++.++. .
T Consensus 210 ~l~~~~~l~~~~~~l~~~-------------~~-~-~~~~~~~~l~g~~~s~i-~P~~~s~a~~~~~~~-~~~asai~-~ 271 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAAL-------------TH-G-YVAMWFVLALGLFNSIM-FPTIFSLALNALGRH-TSQGSGIL-C 271 (310)
T ss_pred HHHHHHHHHHHHHHHHHH-------------cC-C-HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhh-hhhhHHHH-H
Confidence 887776666555433322 11 1 11222333444444433 445455556767743 46677764 6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhHHH
Q 040949 420 SNMFFTFLIAQAFLSMMCHMRAYIF 444 (490)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (490)
.+.+|+.+.|++.|.+.|..+....
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g~~~a 296 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLGIQLA 296 (310)
T ss_pred HHHhcchHHHHHHHHHHHhccchHH
Confidence 7789999999999999998774433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-18 Score=160.13 Aligned_cols=328 Identities=14% Similarity=0.130 Sum_probs=234.2
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh----hcc-hhHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHH
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTK----FGR-KPTILVASSFFLAGAGISSGALN------IWMLIIGRI 132 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 132 (490)
+.+|+++..+|.+..+.-+--++..|+.|.+.|| +|| |+.++.+.+..++.+.++-.+++ ....++.-.
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 3468999999999999999999999999999995 887 45677788999998888887763 556777788
Q ss_pred HhhhhhhhhhhhHHHHhhhcCC-CCccchHHhHHHHHHHHHHHHHHHHH-----HHhcccCCCchHHHHHhhHHHHHHHH
Q 040949 133 LLGIGVGFGNEAVPLFLSEIAP-VQHRGAVNILFQLFVTIGIFLANLVN-----YGTAKLHPHGWRVSLALAGVPAIFLF 206 (490)
Q Consensus 133 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~-----~~~~~~~~~~wr~~f~~~~~~~~~~~ 206 (490)
+.+++......+-.++..|..+ ++||.+..++-..+.++|..+...+. ...-.....||+..-++.++++.+..
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 68899999999999999866654432 11111114689999888888877776
Q ss_pred HHhhc-ccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchH----HhcccCCCchHHHHHHHH
Q 040949 207 IGSIV-ITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFK----ELMKRSSMPPLIIGVLLQ 281 (490)
Q Consensus 207 ~~~~~-~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 281 (490)
+..++ .+|.+.. .+..+++.+.+++ .+++++. +...++.
T Consensus 201 l~~~~~v~ER~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~Nrp----~~~~l~~ 244 (467)
T COG2211 201 LFCFFNVKERVVE--------------------------------TQPTKTGVKLKLKDSFLLIFKNRP----LLLLLLM 244 (467)
T ss_pred HHHHHHhhcccCc--------------------------------cccCcccccccHHHHHHHHHccch----HHHHHHH
Confidence 55554 5564410 0000001122233 4445533 3333334
Q ss_pred HHHHhhchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHH
Q 040949 282 VFQQFTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLL 360 (490)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 360 (490)
.++...+.........+|.+.. |.+.............+.+++.++..++.+|+|+|+.+..+.++..++.+++.+.
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~-- 322 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT-- 322 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh--
Confidence 4444444555555555565543 7777777777777777778878999999999999999999988888888777663
Q ss_pred HhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCc-------cchhhHHHHHHHHHHHHHHHHHHHhH
Q 040949 361 VHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPL-------ETRTAGFAFAVSSNMFFTFLIAQAFL 433 (490)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (490)
+.++....++..++...+.+ ...++.+++++|...- +..|...|....+.-+|.+++..+.|
T Consensus 323 ----------~~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 323 ----------PAGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ----------cCcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22344444444455555554 4467888888887643 33488889999999999999999999
Q ss_pred HHHHhhh
Q 040949 434 SMMCHMR 440 (490)
Q Consensus 434 ~~~~~~~ 440 (490)
+..+..|
T Consensus 392 ~~L~~~G 398 (467)
T COG2211 392 WILGAIG 398 (467)
T ss_pred HHHHHcC
Confidence 9988765
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=154.27 Aligned_cols=355 Identities=13% Similarity=0.084 Sum_probs=243.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHH-HHHHHHHHHHHHHhhhhh---HHHHHHHHHHhhhhhhhhhhh
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTIL-VASSFFLAGAGISSGALN---IWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~ 144 (490)
+.+..|...++..+..++.+|+.|.++|+.|+||... ....+..++..+..++++ ++..++.-.+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 5677889999999999999999999999999766544 555666666666666654 455555678888888889999
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc----------------cCCCchHHHHHhhHHHHHHHHH-
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK----------------LHPHGWRVSLALAGVPAIFLFI- 207 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~----------------~~~~~wr~~f~~~~~~~~~~~~- 207 (490)
-.+++.+..++++-++..++-.....+|..+.-+....... .+...-|..+.+.++..++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999888888777776666776665554321111 1345678888888888777644
Q ss_pred HhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhh
Q 040949 208 GSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFT 287 (490)
Q Consensus 208 ~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (490)
.++..++.++- +.... +...+.-++.+.++++..+++ .+..+++..+...-
T Consensus 216 m~~~v~~~~~~---~~~~~----------------------~~l~~g~k~L~~t~k~i~~~~----~i~~FLiA~~~~~D 266 (438)
T COG2270 216 MILNVHDAEKI---SSPPP----------------------TALRNGFKELKSTFKEIRGRK----NLVLFLIARFFYID 266 (438)
T ss_pred HHhcccccccc---cccch----------------------HHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHh
Confidence 45556655420 00000 000011122233455555443 34445555555555
Q ss_pred chhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 288 GINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 288 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
+..........+-. ++|++..+.........+.+++|+++.|++.||+|.|+++..+.++..+..+.....
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------- 338 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------- 338 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--------
Confidence 66777777777776 679999999999999999999999999999999999988887777666655444331
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH-HHH
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY-IFF 445 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 445 (490)
. .......+..+.+.. ..+.++..-++..+++|+++.++..|+.+..+...+.++|..++.+.+.++.. .-+
T Consensus 339 -----~-~~~~f~i~gll~g~s-~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 339 -----E-GELDFWILGLLVGTS-LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred -----c-ccHHHHHHHHHHHHh-cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 1 111112222222222 33445667788899999999999999999999999999999999999988743 333
Q ss_pred HHHHHHHHHHHHHHhhcccCCC
Q 040949 446 FFAGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
....+....+++.+..+|+.++
T Consensus 412 ~~i~vll~iGl~~L~~v~~~~~ 433 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVPGR 433 (438)
T ss_pred HHHHHHHHhhHhhEEeecCCCC
Confidence 3344444555555566665533
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-19 Score=162.52 Aligned_cols=349 Identities=18% Similarity=0.150 Sum_probs=219.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHH--HHHHH-HHhhh----hhH-HHHHHHHHHhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFF--LAGAG-ISSGA----LNI-WMLIIGRILLGIGV 138 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~--~~~~~-~~~~~----~~~-~~l~~~r~l~G~~~ 138 (490)
|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+. ..+.. ...+. .|. ...+++-+..|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999776554333222 22222 22222 232 23334445556666
Q ss_pred hhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc-ccCchh
Q 040949 139 GFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV-ITETPT 217 (490)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~ 217 (490)
....|...+++.++. ++.+.-.|-.....++|.+++..+++.... .+-+..||+....+++..++.++ -|+.++
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~---i~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN---INPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee---eCccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 666677777776664 344566677778888888888888655443 35567888776666555444433 334332
Q ss_pred HHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchH---HhcccCCCchHHHHHHHHHHHHhhchhhHHH
Q 040949 218 SLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFK---ELMKRSSMPPLIIGVLLQVFQQFTGINAIMF 294 (490)
Q Consensus 218 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
....++.. ..++++.+.+ +++|. +.+|.+.+........+..+..
T Consensus 194 ~~~~~~~~----------------------------~~~~~~~~~~~~~~l~k~----~~fw~~~l~v~g~~~~Y~vfdq 241 (412)
T PF01306_consen 194 QAEVADAL----------------------------GAKKDKVSLKDVLSLFKM----RNFWFFVLFVIGVAAIYDVFDQ 241 (412)
T ss_dssp SS-SSTTS----------------------------SS------HHHHHHHTTS----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccc----------------------------ccCCCCCcHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHH
Confidence 11100000 0011112233 34444 4455555544444444555555
Q ss_pred hHHHHHHHc----CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcc
Q 040949 295 YAPVLFQTV----GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTL 370 (490)
Q Consensus 295 ~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (490)
..+.|...+ +.+....|...+...+.+++...+..++.+|+|.|+.++++..++++=....++
T Consensus 242 qf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~------------- 308 (412)
T PF01306_consen 242 QFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF------------- 308 (412)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh-------------
Confidence 556666554 334455788888888999999999999999999999999998888887777664
Q ss_pred cchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHH-HHHHHHHHHHHHHHhHHHHHhhhhH-HHHHHH
Q 040949 371 TTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFA-VSSNMFFTFLIAQAFLSMMCHMRAY-IFFFFA 448 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 448 (490)
.++.+.....-.+.+.-+.....+. .-++.+.+|++..++...+. +....++..+.+.+.|.+.|+.|.. .+++.+
T Consensus 309 -~~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg 386 (412)
T PF01306_consen 309 -ATNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMG 386 (412)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHH
Confidence 2455555555566655555443333 45668999999998988885 5778899999999999999999964 666777
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 040949 449 GWILVMGLFALFLLPETKG 467 (490)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (490)
.+.....++..+.+++.++
T Consensus 387 ~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 387 LIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHheeeecCCCc
Confidence 7666666677776665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=140.91 Aligned_cols=359 Identities=15% Similarity=0.085 Sum_probs=219.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSGAL--NIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 142 (490)
+|+|+++..-+.+.|..-.-+..+++|+++|| +|+|+.+.+|.+++.+|.++.+.+. +...+.++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 68899999999999999889999999999998 7999999999999999999999884 78899999999999999999
Q ss_pred hhHHHHhhhcCCCC--ccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCc-----
Q 040949 143 EAVPLFLSEIAPVQ--HRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITET----- 215 (490)
Q Consensus 143 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es----- 215 (490)
+....+++|.+|++ +|...++++.++.++|..++|++ .....+..||...|...++-....++..+..+..
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i--~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII--TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH--HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 99999999999865 47788999999999999999999 5556667899999999888776665555444321
Q ss_pred ----hhHHhhcCChHHHHHHHHHhhCch----hhHHHHHHHHHHH----------HHHhhcccchHHhcccCCCchHHHH
Q 040949 216 ----PTSLIERGNEVAGHKALKKIRGVE----DVNAEYEQIKLAS----------DIARQVKHPFKELMKRSSMPPLIIG 277 (490)
Q Consensus 216 ----p~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (490)
|..+..+................. ...+..+...... +..+.++.. .+.-|-...-+.++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~ 292 (498)
T COG3104 214 GVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLF 292 (498)
T ss_pred CCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHH
Confidence 111101111101111111100000 0000000000000 000000000 110000000112222
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHHHc--CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCch-------HHHHHhhHHH
Q 040949 278 VLLQVFQQFTGINAIMFYAPVLFQTV--GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRR-------KLLLQACVQM 348 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-------~~~~~~~~~~ 348 (490)
..+.+..+.-....++.|.....++. |++ ....+..+...+.-++..++..++..|.+++ .-+..+..++
T Consensus 293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 23333333333334444444333322 322 2345667777777777777777777664332 1233444444
Q ss_pred HHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHH
Q 040949 349 FISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLI 428 (490)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 428 (490)
+.+++++...... . .......+.++.+....+...+ .....|+..+++..+.|+...+..++........+..++
T Consensus 372 g~~fl~l~~~~~~-~---~~~~~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~ 446 (498)
T COG3104 372 GLGFLILLLAGIW-F---GGPSGLVSVWWLVLSYVLQSFG-ELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLG 446 (498)
T ss_pred HHHHHHHHHHHHh-h---cCCCCCcCHHHHHHHHHHHHHH-HHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444332110 1 1101223444444444444444 556688888888999999999999998888888887777
Q ss_pred HHHhH
Q 040949 429 AQAFL 433 (490)
Q Consensus 429 ~~~~~ 433 (490)
..+.+
T Consensus 447 g~va~ 451 (498)
T COG3104 447 GQVAG 451 (498)
T ss_pred ceecc
Confidence 77766
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=152.18 Aligned_cols=401 Identities=14% Similarity=0.142 Sum_probs=231.4
Q ss_pred cccchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHH
Q 040949 9 SKITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFAS 88 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~ 88 (490)
.+.+|+... ++.+.+|+.+.+.+++.+. ..++.++.+| +-+.+..|++.++..++.++++
T Consensus 29 ~~t~wrsi~---l~~~~sfl~~v~~sI~~~s--~wpYl~~lD~---------------~A~~~ffG~viaa~slg~~i~~ 88 (488)
T KOG2325|consen 29 RKTNWRSIY---LALLNSFLVAVQFSIYLTS--MWPYLQKLDP---------------TATATFFGLVIAASSLGHAIFS 88 (488)
T ss_pred cCCchHhHH---HHHHHHHHHhhhheEEEee--cchhhhhcCC---------------CCCcchhhHHHHHHHHHHHhcc
Confidence 345555544 3444466677777776543 4456555422 4578889999999999999999
Q ss_pred hhhhhhhhhhcc-hhHHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHH
Q 040949 89 FVASKVCTKFGR-KPTILVASSFFLAGAGIS-SGA---L-NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVN 162 (490)
Q Consensus 89 ~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 162 (490)
+..|++..|.|. |+.++.|.++..+++++. +.. + ..+.++++|++.|+|.| .....-+|+++....++|.+++
T Consensus 89 liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~ 167 (488)
T KOG2325|consen 89 LIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAF 167 (488)
T ss_pred hhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHH
Confidence 999999999997 888999999999999988 332 3 67899999999999987 6788889999999899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCc-----------hHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHH
Q 040949 163 ILFQLFVTIGIFLANLVNYGTAKLHPHG-----------WRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHK 230 (490)
Q Consensus 163 ~~~~~~~~~G~~i~~~~~~~~~~~~~~~-----------wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~ 230 (490)
+....+..+|.++||.+..........| .-.+-|+.+++.++.++. ..++.|.++--..++.+++
T Consensus 168 a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~--- 244 (488)
T KOG2325|consen 168 AATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV--- 244 (488)
T ss_pred HHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc---
Confidence 9999999999999998864443333222 234567777777776554 4456666532111110000
Q ss_pred HHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHH-hHHHHHHHcCCCCch
Q 040949 231 ALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMF-YAPVLFQTVGFKNDA 309 (490)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~ 309 (490)
++ ++.+.+ +.-+.+..+...+.+.+..+........... ..+.....++++.++
T Consensus 245 ---------------~~---~~~~~~-------~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~ 299 (488)
T KOG2325|consen 245 ---------------EE---EKSDIE-------KVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSE 299 (488)
T ss_pred ---------------hh---hccchh-------hhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccch
Confidence 00 000000 0001111122233333333333333333233 334444556777666
Q ss_pred hHHHH----HHHhHHHHHHHHhhhhhh-cccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc-------cCcccchh---
Q 040949 310 SLLSS----VITGTVNVLSTLVSIYAV-DKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT-------SNTLTTTQ--- 374 (490)
Q Consensus 310 ~~~~~----~~~~~~~~~~~~~~g~l~-d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--- 374 (490)
+.... +..++......+...... .++.+|+.+..++.....+..+............ ..+.....
T Consensus 300 av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc 379 (488)
T KOG2325|consen 300 AVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWC 379 (488)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhh
Confidence 54433 333333333333333322 3334455554443333333222211110000000 00000000
Q ss_pred ------hHHHHHHHHHHHHHhhccc-cccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Q 040949 375 ------AGFVVFLVCLFVMAFAWSW-GPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFF 447 (490)
Q Consensus 375 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (490)
....+........+.+..+ .....+.-+|+..++.+++..++.......+..++|.+........|....+.+
T Consensus 380 ~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~ 459 (488)
T KOG2325|consen 380 DTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWII 459 (488)
T ss_pred ccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHH
Confidence 1111111111111211111 112334457999999999999999999999999999999998888887766666
Q ss_pred HHHHHHHHHHH
Q 040949 448 AGWILVMGLFA 458 (490)
Q Consensus 448 ~~~~~~~~~~~ 458 (490)
..+..++....
T Consensus 460 ~~~~~l~~~~l 470 (488)
T KOG2325|consen 460 LLCLLLVVAAL 470 (488)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=152.92 Aligned_cols=281 Identities=14% Similarity=0.151 Sum_probs=200.3
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh--------------------h
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA--------------------L 122 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~ 122 (490)
++.|+++.++.|++.+.+=++..+...+..+.+-|.-|-+.+-+|+++++++++++++- +
T Consensus 124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 56679999999999999999999999999999999999999999999999999998772 0
Q ss_pred ---------------------------h----HH-HHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHH
Q 040949 123 ---------------------------N----IW-MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVT 170 (490)
Q Consensus 123 ---------------------------~----~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 170 (490)
+ ++ .++++.++.|+|....++...+|+-|...+++-+..+|++.+...
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 0 22 667789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc------CC-----------CchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHH
Q 040949 171 IGIFLANLVNYGTAKL------HP-----------HGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALK 233 (490)
Q Consensus 171 ~G~~i~~~~~~~~~~~------~~-----------~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~ 233 (490)
+|.++|.+++...... .. -.|..-|++.+.+.++..+..+++|++.+. .++..++ +
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~---~~~~~~~----~ 356 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK---SQKRKRA----R 356 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc---ccccchh----h
Confidence 9999999886544321 00 137777888888888887778888876421 1110000 0
Q ss_pred HhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc-CCCCchhHH
Q 040949 234 KIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDASLL 312 (490)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 312 (490)
+.+..++.++..++.....+.-++.....+++++ .+++....+...+....+.++.+|+|.|++.+ |.++..+..
T Consensus 357 ~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~----N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~ 432 (735)
T KOG3626|consen 357 DLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLS----NPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANI 432 (735)
T ss_pred hhcccccccccccCCcchhhhHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHH
Confidence 0000000000000000000011112223344444 47788888888888899999999999999765 999999988
Q ss_pred HHHHHhH-HHHHHHHhhhhhhcccC--chHHHHHhhHHHHHHHHH
Q 040949 313 SSVITGT-VNVLSTLVSIYAVDKVG--RRKLLLQACVQMFISQST 354 (490)
Q Consensus 313 ~~~~~~~-~~~~~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~ 354 (490)
+....++ +..+|.+++|++.+|+. .|....+..++..+..+.
T Consensus 433 l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 433 LTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 8865554 45677888999999874 455555554444444443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-17 Score=159.15 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=130.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGI---SSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++... ...+++...++++|++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888899999999999999999999999988887654443332 22345677888899999998887778
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhc-
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIER- 222 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~- 222 (490)
....++.|.+|++.|+++++.......++..++|.+...... ...+|+.++++..+++++.++..+++||+|+|+.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVE-STQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 888889999999999999997544455556677766433322 113578887777777777666677789999998865
Q ss_pred ----CChHHHHHHHHHhhC
Q 040949 223 ----GNEVAGHKALKKIRG 237 (490)
Q Consensus 223 ----~~~~~a~~~~~~~~~ 237 (490)
+|.|||++.++++++
T Consensus 441 ~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 TPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccccchhhHHHHhhcccc
Confidence 899999999999874
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-18 Score=169.84 Aligned_cols=369 Identities=13% Similarity=0.115 Sum_probs=3.0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh--------------------
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL-------------------- 122 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------- 122 (490)
.+.|+++.++.|++.+.+-++..+..++..++++|..|-|.+-+|.++++++++++++-+
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 566799999999999999999999999999999998888999999999999999876510
Q ss_pred ------------------------------hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHH
Q 040949 123 ------------------------------NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIG 172 (490)
Q Consensus 123 ------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 172 (490)
-++.+++++++.|+|....++...+|+-|..++++-+..+|++.+...+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 13678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc--C--------------CC----chHHHHHhhHHHHHHHHHHhhcccCc-hhHHhhcCChHHHHHH
Q 040949 173 IFLANLVNYGTAKL--H--------------PH----GWRVSLALAGVPAIFLFIGSIVITET-PTSLIERGNEVAGHKA 231 (490)
Q Consensus 173 ~~i~~~~~~~~~~~--~--------------~~----~wr~~f~~~~~~~~~~~~~~~~~~es-p~~~~~~~~~~~a~~~ 231 (490)
.++|.+++...... + +. .|-.-|++.+.+.++..+..+++|+. |+. ++..++.+..
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~---~~~~~~~~~~ 266 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT---SERQEEKESS 266 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc---ccccchhhhh
Confidence 99998886443321 0 01 25566666777666666666666665 322 0111111000
Q ss_pred HHHhhCchhhH-HHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc-CCCCch
Q 040949 232 LKKIRGVEDVN-AEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDA 309 (490)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 309 (490)
.++....++.+ ++.++.+...+..++.....++ ...++.+....+..........++.+|.|.|+|.. +.++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~----Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~ 342 (539)
T PF03137_consen 267 ERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKR----LLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ 342 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchhhhhhhcccccccccchhhhhhhHHHHHHH----HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 00000000000 0000000000111111222333 34447788888888888888899999999999765 999999
Q ss_pred hHHHHHHHhH-HHHHHHHhhhhhhcccC--chHHHHHhhHHHHHHHHHHHH-HHHHh-------hc-cc-----------
Q 040949 310 SLLSSVITGT-VNVLSTLVSIYAVDKVG--RRKLLLQACVQMFISQSTIGG-MLLVH-------LK-AT----------- 366 (490)
Q Consensus 310 ~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~~~~-~~~~~-------~~-~~----------- 366 (490)
++++.....+ +.++|.+++|++.+|++ .|+......+...+..+.... ..... .. .+
T Consensus 343 A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~ 422 (539)
T PF03137_consen 343 ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCN 422 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCC
Confidence 8887755544 66788899999999974 455554444444444333111 10000 00 00
Q ss_pred ------------------cCcccc-hh-hHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHH-HHHH
Q 040949 367 ------------------SNTLTT-TQ-AGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSN-MFFT 425 (490)
Q Consensus 367 ------------------~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~ 425 (490)
..+... .. ....++..++..........|... ..-+.+|+++|+.+.|+...+. .+|.
T Consensus 423 ~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~-i~LR~V~~~~rs~AlGv~~~~~rllg~ 501 (539)
T PF03137_consen 423 LTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL-ITLRCVPPEQRSFALGVQWLIIRLLGF 501 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe-eeeccCChhhcchhhhHHHHHHHhhcC
Confidence 000000 01 112222222222333333344433 3458899999999999998764 5677
Q ss_pred HHHHHHhHHHHHhh
Q 040949 426 FLIAQAFLSMMCHM 439 (490)
Q Consensus 426 ~~~~~~~~~~~~~~ 439 (490)
+-+|.++|.+.|..
T Consensus 502 IPgPIifG~iiD~t 515 (539)
T PF03137_consen 502 IPGPIIFGAIIDST 515 (539)
T ss_dssp --------------
T ss_pred cchHHHHhHHHhhh
Confidence 89999999999875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-14 Score=127.29 Aligned_cols=329 Identities=12% Similarity=0.070 Sum_probs=217.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhc-----chhH-HHHHHHHHHHHHHHHhhh-----h--------h-H
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFG-----RKPT-ILVASSFFLAGAGISSGA-----L--------N-I 124 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~-l~~~~~~~~~~~~~~~~~-----~--------~-~ 124 (490)
|+++.....+.+.+...+... ..+.+|+.+|+.+ ||.. +..|..+...+..+.+++ . . .
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 357788888999988887766 5889999999999 7754 555677777766665553 2 1 2
Q ss_pred H--HHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCch-HHHHHhh--H
Q 040949 125 W--MLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGW-RVSLALA--G 199 (490)
Q Consensus 125 ~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~w-r~~f~~~--~ 199 (490)
+ ...+.-.+.|+|.+...++..+++.|..|+|+|+++.++.....-+|.+++..+. ....+.++- |..-.+. +
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~--g~lL~~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVF--GRLLDPFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHH--HHHccccCHHHHHHHHHHHH
Confidence 2 3344567789999999999999999999999999999999999999999999884 333333332 3222222 2
Q ss_pred HHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHH
Q 040949 200 VPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVL 279 (490)
Q Consensus 200 ~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (490)
++.++..++..+-.|.++. ..+ +..++++...+..++++..++..++.+....
T Consensus 166 ~i~~~l~~ia~wg~E~r~~-~~~--------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 166 LIALLLNLIALWGQEPRRS-RRA--------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHHHHHHHHhcccCCc-ccc--------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 2222232233332332210 000 0000111122344566666666666666555
Q ss_pred HHHHHHhhchhhHHH-hHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhc-ccCchHHHHHhhHHHHHHHHHHHH
Q 040949 280 LQVFQQFTGINAIMF-YAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVD-KVGRRKLLLQACVQMFISQSTIGG 357 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~~~~~~~~~~~~~~~~~~ 357 (490)
+..+.. +.-.. .-|+=-+-+|++..+...+....+.+.++|..+.+++.. |.++++....++....+++.++..
T Consensus 219 l~t~a~----~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 219 LGTLAF----FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHH----HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 555432 22222 223333446999999999999999999999988887666 678888877888877777766654
Q ss_pred HHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040949 358 MLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC 437 (490)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (490)
.. ...+.+.......+++.+.+...... .+.+.++.++++.|..+|.......+...++..+.|.+.|
T Consensus 295 a~-----------~~~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 295 AG-----------PLGSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HH-----------hcccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22345555555566666555443322 3344588888899999999999999999999999988877
Q ss_pred hh
Q 040949 438 HM 439 (490)
Q Consensus 438 ~~ 439 (490)
..
T Consensus 363 ~~ 364 (403)
T PF03209_consen 363 LV 364 (403)
T ss_pred HH
Confidence 53
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=120.39 Aligned_cols=136 Identities=26% Similarity=0.393 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCC
Q 040949 77 TSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQ 156 (490)
Q Consensus 77 ~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 156 (490)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhh-cccC
Q 040949 157 HRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSI-VITE 214 (490)
Q Consensus 157 ~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 214 (490)
+|++..++.+....+|..+++.++. ...+..+|++.+++.++..++..+..+ +.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGG--VLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHH--HHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999954 444567899999988877776655444 3454
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=130.82 Aligned_cols=323 Identities=12% Similarity=0.106 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh--hhhhhhhHHHHhhhc
Q 040949 75 LFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIG--VGFGNEAVPLFLSEI 152 (490)
Q Consensus 75 ~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~ 152 (490)
.-.....+...+.++..|.++||+|||..+.+......+..+...+.. |++.+ +.|+. .+.......++++|.
T Consensus 66 ~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 66 VKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADI 140 (463)
T ss_pred HHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeec
Confidence 333344677789999999999999999999999998888887777766 33333 44442 344677788899999
Q ss_pred CCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHH
Q 040949 153 APVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKA 231 (490)
Q Consensus 153 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~ 231 (490)
...++|....++.......+..++|.++.... ...|.-.+|.+..+..++..+. ..++||+-.. +++.+ + .
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~--~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~--~ 212 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLVIGPALGGYLV--KFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-A--T 212 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-c--c
Confidence 99999999999999999999999999954443 3367778888888887777555 4568887420 11110 0 0
Q ss_pred HHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchh
Q 040949 232 LKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDAS 310 (490)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 310 (490)
..+.. ............+....+....+..+.......+....-.....-..+.+++ ..+++..+.
T Consensus 213 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~ 279 (463)
T KOG2816|consen 213 LRELT-------------PGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEF 279 (463)
T ss_pred ccccC-------------CCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHH
Confidence 00000 0000000011112222221122222222222222222111111112233444 349999999
Q ss_pred HHHHHHHhHHHHHHHHhhh-hhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHh
Q 040949 311 LLSSVITGTVNVLSTLVSI-YAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAF 389 (490)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g-~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (490)
+.+.+..+....+++++.. .+...++.|+....+.....+.....++. +..|.......+. .+
T Consensus 280 s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--------------~~~w~~~~~~v~~--~~ 343 (463)
T KOG2816|consen 280 SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--------------TETWMMFAAGVVV--AL 343 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------ccchhhhHHHHHH--Hh
Confidence 9888888888989888776 77778898888888888777777777653 2223222222221 22
Q ss_pred hccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 390 AWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
.....|...+..+...+++.+|++.++...+..+.+.++|.+.+.+...+
T Consensus 344 ~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 344 AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33345556677788889999999999999999999999999999886543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-13 Score=128.37 Aligned_cols=380 Identities=13% Similarity=0.109 Sum_probs=216.1
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh-----cchhHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHH
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKF-----GRKPTILVASSFFLAGAGISSGA----LNIWMLIIGRIL 133 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l 133 (490)
.+++|+++++...+.+...+...+ -++.|.++|-+ .||+-++++.++.+++.+..+.. .+.....++-++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 344588999999999999888876 56799999975 35666777777776666655553 356677777888
Q ss_pred hhhhhhhhhhhHHHHhhhcCCC--CccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc
Q 040949 134 LGIGVGFGNEAVPLFLSEIAPV--QHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV 211 (490)
Q Consensus 134 ~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 211 (490)
..+|.+.....+.+++.|...+ +.|+...+.......+|.+++..+ .+...+..++|..|.+.+++..+..+..++
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l--~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLL--SGPLLDSFGPQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh--hhhhhhcCCCeEEehHHHHHHHHHHHHHHH
Confidence 9999999999999999999843 346777888888888999999888 445556678899999888777766555554
Q ss_pred ccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHH-HHHHHHHHHhhchh
Q 040949 212 ITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLII-GVLLQVFQQFTGIN 290 (490)
Q Consensus 212 ~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 290 (490)
++|+.+ ..++.+... . .++ .........++.....++.++.+..++... ..++..+... ...
T Consensus 174 ~~~e~~-~~~~~~~~~-------~------~~~--~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 236 (433)
T PF03092_consen 174 LLEERK-VRPADEVFS-------F------GKE--EVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPS-ISS 236 (433)
T ss_pred hhhhcc-ccccchhhc-------c------ccc--ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC-CCC
Confidence 443210 000000000 0 000 000000001111222333333321111111 1111111111 111
Q ss_pred h-HHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCc
Q 040949 291 A-IMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNT 369 (490)
Q Consensus 291 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
+ ..++.......-++++...+....+..++.++|..+..+...+..-|+++....++..+..+.-..+ .......
T Consensus 237 a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l----v~~~n~~ 312 (433)
T PF03092_consen 237 ASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL----VTRWNLD 312 (433)
T ss_pred ccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE----EEEEeee
Confidence 1 1111111111123777777877777777788888777766666677777665555443332211110 0000000
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhh--------
Q 040949 370 LTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRA-------- 441 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 441 (490)
..-++.+..+.-..+........+.|.. ..++|+.|+..-|+.+++..++.++|..++..+...+.+..+-
T Consensus 313 ~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l 391 (433)
T PF03092_consen 313 LGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNL 391 (433)
T ss_pred eCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccch
Confidence 0001112222222333333344444443 3457999999999999999999999999999999888776541
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040949 442 YIFFFFAGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
....+++.++.+..+.+..++|+.++
T Consensus 392 ~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 392 WLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 12333334444445555556665443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=136.13 Aligned_cols=142 Identities=13% Similarity=0.012 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Q 040949 72 ILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSE 151 (490)
Q Consensus 72 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 151 (490)
...+...+..++..++.++.|+++||+|||++++.+.++.++++++.++.++...+++.+++.|+..+..++...++++|
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999999999999999999999999999988888899999999888899999999999
Q ss_pred cCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 152 IAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 152 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
++|.++|++++|+.+....+|.+++|.++..... .+...+|++.+++.++..++.+++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~---~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG---ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999543332 2356788888777777767777789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=114.16 Aligned_cols=341 Identities=10% Similarity=0.053 Sum_probs=215.3
Q ss_pred cCCCchHHH-HHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 66 CKYDNQILQ-LFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 66 ~~~s~~~~g-~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.++...+-+..++-|++.+ ...+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHH
Confidence 477777765 56667777788899999999999999999999999999999999999999999999999999988 4778
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCC
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGN 224 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 224 (490)
-++++-...|+++-.++.+...+..-+|..++.+++-........+.+....+......+.++..+++|..++...-+++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 88999999999999999999999999999999888766666666778888777766666666677778876654333222
Q ss_pred hHHHHHHHHHhhCch--hhHHHH-HHHHHHH-------HHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHH
Q 040949 225 EVAGHKALKKIRGVE--DVNAEY-EQIKLAS-------DIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMF 294 (490)
Q Consensus 225 ~~~a~~~~~~~~~~~--~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
.++..+ .++...++ +.+++. +..+... ..-+.....+++..+ .+.++...+.+.....++.....
T Consensus 194 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~----~~~ll~WSlWWa~atcgy~qv~n 268 (412)
T PF01770_consen 194 PPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYS----NPRLLLWSLWWAFATCGYYQVIN 268 (412)
T ss_pred Cccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhc----CchHHHHHHHHHHHHhHHHHHHH
Confidence 211111 00000000 000000 0000000 000111112222223 34455566666666667778888
Q ss_pred hHHHHHHHc---CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCccc
Q 040949 295 YAPVLFQTV---GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLT 371 (490)
Q Consensus 295 ~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
|...+.++. +-+....|..-+...+.+.++.+..|++..+..+...+..+......+.+++... .
T Consensus 269 YvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~------------~ 336 (412)
T PF01770_consen 269 YVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS------------F 336 (412)
T ss_pred HHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH------------H
Confidence 888777776 3334456777777788888888888988555555443333322222222222211 2
Q ss_pred chhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHH
Q 040949 372 TTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 425 (490)
..+.|.......++...+... .++...-++.....+.-|...|+......+-.
T Consensus 337 t~~Iwv~Y~~yIif~~~y~fl-iTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 337 TGNIWVCYAGYIIFRSLYMFL-ITIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 345566666666666665543 33333333444444555666666655544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=125.46 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=121.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
+|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+...+..
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999888888888999999999999999998888776666655555567788888889999999888888888
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccC
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITE 214 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 214 (490)
..+..|..|+ +|+++.++.+...++|..+++.++ +...+..+|+..|++.+++.++.++..++.||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~--G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLA--GIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888999874 699999999999999999999995 44455579999999888887777777666665
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=110.01 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=150.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
+|++..|++.+...-+....+..++.|.++||+|||+.-++..++.+++++ +-..++++.++++|++.|++....+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999886 4456889999999999999999999998
Q ss_pred HHH-hhhcCCCC----ccchHHhHHH-HHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhh-cccCchhH
Q 040949 146 PLF-LSEIAPVQ----HRGAVNILFQ-LFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSI-VITETPTS 218 (490)
Q Consensus 146 ~~~-i~~~~~~~----~r~~~~~~~~-~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~ 218 (490)
.++ +.|.-..+ ..+..++... ..+++-.+++.+++-........|-..+|........+..++.. ..+|.+..
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 886 45653222 2222233222 22333334444443333332334557888887776666554443 34554310
Q ss_pred HhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHH
Q 040949 219 LIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPV 298 (490)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
..+. .+..++.+..++.+.++ ++.+.............+.....|.|.
T Consensus 223 ---~~~~--------------------------~~~~~~~~~a~~~i~~d---~ril~LG~~qslFE~smy~FVflWtPa 270 (354)
T PF05631_consen 223 ---TSSS--------------------------SSLSGSFREAWRAILSD---PRILLLGLIQSLFEGSMYLFVFLWTPA 270 (354)
T ss_pred ---cccc--------------------------cchHHHHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHheeeeece
Confidence 0000 00001111223334333 344455555555555556666677777
Q ss_pred HHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc
Q 040949 299 LFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDK 334 (490)
Q Consensus 299 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 334 (490)
+-.+ + .....|++++-+..+.++|+.+..++..+
T Consensus 271 L~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 271 LDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred ecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6521 1 12346888888899999999888665544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=123.04 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFIS 351 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 351 (490)
+..+.+.+..++...+......+.|.+++ ++|++..+.++..+...++.+++++..|+++||+|||+.+..+..+..++
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 33555555566666666777777777775 57999999999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 040949 352 QSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQA 431 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (490)
.+.+.+. ++.+..+....+.+.... ...+....+..|..|+++|+++.|+.+...++|..++|.+
T Consensus 87 ~~~~~~~--------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l 151 (395)
T PRK10054 87 FIAIPLV--------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPL 151 (395)
T ss_pred HHHHHHH--------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555431 222333333333333322 3344556677899999999999999999999999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHH-HHHHhhcccC
Q 040949 432 FLSMMCHMRAYIFFFFAGWILVMG-LFALFLLPET 465 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 465 (490)
.+.+.+ .++...+...+++.+.. ++..+..++.
T Consensus 152 ~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 152 GTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998875 45443333333333333 3334445544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=128.43 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=125.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
+.+..+.|.+.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999989999999999999999999999988888888
Q ss_pred HHhhhcCCCCccchHHhH-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHh-hcccCch
Q 040949 147 LFLSEIAPVQHRGAVNIL-FQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGS-IVITETP 216 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp 216 (490)
.++.|.+|++.|+...+. ++....+|.++++.+ .+...+..|||..|.+.++..++..+.. ...+++|
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~--~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL--AGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH--HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999887655 677788999999999 4555566799999999888776654443 3444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=125.62 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=123.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhhhhhhhhh
Q 040949 68 YDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL----NIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 68 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~ 143 (490)
++..+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3557789999999999999999999999999999999999999988877666632 346777889999999998889
Q ss_pred hHHHHhhhcCCCCccchHHhHHH-HHHHHHHHHHHHHHHHhcccCC----CchHHHHHhhHHHHHHHHHH-hhcccCch
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQ-LFVTIGIFLANLVNYGTAKLHP----HGWRVSLALAGVPAIFLFIG-SIVITETP 216 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~esp 216 (490)
....++.|++|+++|+++.++.+ ...++|.++||.+++....... +||+..|.+.++..++..++ ..++||+.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999997 6788999999999655443321 57999999888877776544 45567663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-12 Score=121.79 Aligned_cols=180 Identities=11% Similarity=0.010 Sum_probs=131.6
Q ss_pred chHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHH
Q 040949 272 PPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFIS 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 351 (490)
++.+....+..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34455555666666666667777788888889999999999999999999999999999999999999999888777776
Q ss_pred HHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 040949 352 QSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQA 431 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (490)
.+..... ++.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+
T Consensus 91 ~~~~~~~--------------~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 91 TLACGFA--------------PGYITMFIARLVIGIGMGG-EYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred HHHHHHh--------------ccHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6655431 2333344444444444332 344556667899999999999999999999999999999
Q ss_pred hHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040949 432 FLSMMCHMR--AYIFFFFAGWILVMGLFALFLLPETK 466 (490)
Q Consensus 432 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (490)
.+.+.+..+ +...+...++..+..++.....||++
T Consensus 156 ~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 998887665 55444444444444444445556643
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=113.71 Aligned_cols=177 Identities=15% Similarity=0.068 Sum_probs=147.6
Q ss_pred chHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHH
Q 040949 272 PPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFIS 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 351 (490)
+...+.+.+..|......+...-.+|.+.+++|.|...+|...+.+.++..++.++...+.||++||+.+.....++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 35566777778888888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 040949 352 QSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQA 431 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (490)
.++..+. ++.+...+.-.+.+...+ .+.++......++.|+++|+++.++.+....++..++.++
T Consensus 92 n~l~alA--------------p~f~~Ll~aR~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPL 156 (394)
T COG2814 92 NLLSALA--------------PSFAVLLLARALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156 (394)
T ss_pred HHHHHHh--------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccH
Confidence 8888762 355555555555555544 3355667778999999999999999999999999999999
Q ss_pred hHHHHHhhhhH-HHHHHHHHHHHHHHHHHhhcc
Q 040949 432 FLSMMCHMRAY-IFFFFAGWILVMGLFALFLLP 463 (490)
Q Consensus 432 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 463 (490)
..++-|..||. .|+..+.+..+..+..+..+|
T Consensus 157 Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 157 GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999987 455556656666666777788
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=121.14 Aligned_cols=144 Identities=22% Similarity=0.343 Sum_probs=132.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchh-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKP-TILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+...+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 678999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI 212 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 212 (490)
.+++.|..|+++|++.+++.+....+|..+++.+ .....+..+|+..+++.+++.++..+..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999 4445556799999999998888776655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=119.18 Aligned_cols=175 Identities=13% Similarity=0.183 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc-CchHHHHHhhHHHH
Q 040949 272 PPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV-GRRKLLLQACVQMF 349 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 349 (490)
++.++..+...+.....++.+..++|.++++ .|++..+++...........++.+++|+++||+ |||+.+..+.++..
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 3445555555566666778888899999865 599999999999999988899999999999998 99999999988888
Q ss_pred HHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCcc--chhhHHHHHHHHHHHHHHH
Q 040949 350 ISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLE--TRTAGFAFAVSSNMFFTFL 427 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~ 427 (490)
++.+++.. .............+...+.+. ..+...+++.|.+|++ .|.++.++.+...++|+.+
T Consensus 88 lg~lll~~-------------~~~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i 153 (493)
T PRK15462 88 IGHVVLGA-------------SEIHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII 153 (493)
T ss_pred HHHHHHHH-------------hhcchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH
Confidence 87665432 111111122222233333332 2344456778999976 6999999999999999999
Q ss_pred HHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 040949 428 IAQAFLSMMCHMRAYIFFFFAGWILVMGLFALF 460 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (490)
+|.+.+++.+..++...+..+++..+.+++.+.
T Consensus 154 ap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 154 APIACGYAQEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence 999999999888866555555545554544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=118.58 Aligned_cols=181 Identities=17% Similarity=0.081 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHH
Q 040949 272 PPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFIS 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 351 (490)
++......+.++.............|.+.+++|++..+.++..+...++..++++..|++.||+|||+.+..+..+..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34455555566666666677777788777889999999999999999999999999999999999999998888888877
Q ss_pred HHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 040949 352 QSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQA 431 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (490)
.++..+. ++.+..+..-.+.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..+++.+
T Consensus 87 ~~~~~~~--------------~~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 87 STATMFA--------------TGPESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHHh--------------cCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766542 233334444444444444 3345555667899999999999999999999999999999
Q ss_pred hHHHHHh------hhhHHHHHH-HHHHHHHHHHHHhhcccCCC
Q 040949 432 FLSMMCH------MRAYIFFFF-AGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 432 ~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 467 (490)
.+.+.+. .++...+.. +....+...+.++++||+++
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 9988752 355544444 34444444555566777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=117.27 Aligned_cols=160 Identities=16% Similarity=0.060 Sum_probs=117.6
Q ss_pred hHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcc
Q 040949 291 AIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTL 370 (490)
Q Consensus 291 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (490)
......|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+.+..+..+..++.+.....
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------ 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 34445788889999999999999999999999999999999999999999999888877776665541
Q ss_pred cchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH-HH
Q 040949 371 TTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFF-AG 449 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 449 (490)
++.+..++...+.+.+.+ ...+....++.|.+|+++|+++.|+......++..++|++.+.+.+..++...+.. +.
T Consensus 95 --~~~~~l~~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 --WNFTVLLISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred --ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 233444444344333332 23445556678999999999999999999999999999999998888776654444 33
Q ss_pred HHHHHHHHHHhhcccC
Q 040949 450 WILVMGLFALFLLPET 465 (490)
Q Consensus 450 ~~~~~~~~~~~~~~~~ 465 (490)
+..+.........|+.
T Consensus 172 ~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 172 GALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3333333444445553
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-12 Score=119.61 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHH
Q 040949 275 IIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQST 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 354 (490)
.+......+.............|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33333333333334455555678888889999999999999999999999999999999999999998888777776665
Q ss_pred HHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 040949 355 IGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLS 434 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (490)
.... ++.+.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..+++.+.+.
T Consensus 87 ~~~~--------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 87 LALS--------------NNIETLLVLRFVQAFGASA-GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHH--------------ccHHHHHHHHHHHHcchhH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5431 2333333333444433332 234556677899999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHH-HHHHHHHHHHHHhhcccCCC
Q 040949 435 MMCHMRAYIFFFF-AGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 435 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 467 (490)
+.+..++...+.. +.+..+..+...+..||+++
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 152 ILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9888776644443 44444444444455666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=117.32 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
+.++...+.+......--.+..-.|.+.++.++|..|.|.+.+...+..-++..+.|.++||.+.|+.+..++++.++..
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 44555556666655566677777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
+++++. ++.+...++..+-+..-+.++.|..-. +..-+|+++||+..++.|+..++|+.+.|++.
T Consensus 109 il~Gfs--------------~s~~~~~~l~~lng~fQg~Gwpp~~~~-i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 109 ILFGFS--------------PSLFLFAVLWVLNGWFQGMGWPPCART-ITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHhhh--------------hHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 888863 244555555556566666666665544 57899999999999999999999999999999
Q ss_pred --HHHHHhhhhHHHHHH-HHHHHHHHHHHHhhcccCC
Q 040949 433 --LSMMCHMRAYIFFFF-AGWILVMGLFALFLLPETK 466 (490)
Q Consensus 433 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 466 (490)
+.+..+.++...+++ +++.++.++++++..+++.
T Consensus 174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 888887776655555 5555566666666666553
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-12 Score=120.69 Aligned_cols=176 Identities=16% Similarity=0.069 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHH
Q 040949 275 IIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQST 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 354 (490)
.....+..+...........+.|.+.+++|.+..+.+...+...++.+++.++.|+++||+|||+.+..+..+..++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444556667788888889999999999999999999999999999999999999998888777766655
Q ss_pred HHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 040949 355 IGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLS 434 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (490)
.... .+.+...+...+.+.+.+ ...+....++.|.+|++.|+++.++.+....+|..+++.+.+.
T Consensus 99 ~~~~--------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 99 CALA--------------TNVTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred HHHc--------------cchHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence 5431 233333344444444333 3345566778899999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHH-HHHHHHHHHHHhhcccC
Q 040949 435 MMCHMRAYIFFFFA-GWILVMGLFALFLLPET 465 (490)
Q Consensus 435 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 465 (490)
+.+..++...+.+. .+..+...+.....||+
T Consensus 164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred HhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 98887765444443 34444444555556664
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=117.93 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=121.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
+|.++.+.+++.+.......++.++.|++.||+|||+++..+.++..+......+.++.+.+.+.+++.|++.+...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999888888888899999999999999999988887777666666677888888889999999999888888
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccC
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITE 214 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 214 (490)
..++.|..|+ +|+++.++.+....+|..++|.++ ....+..||+..|++.++..++..+...+++|
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~--g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVG--GILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 8999999875 567999999999999999999994 44445568999999988887776666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=119.37 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHH
Q 040949 275 IIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQST 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 354 (490)
....++..+...........+.|.+.++.|++..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHH
Confidence 33344444444444456677889999999999999999999999999999999999999999999998888887777665
Q ss_pred HHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 040949 355 IGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLS 434 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (490)
.... ++.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+.
T Consensus 105 ~~~~--------------~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 105 FGFS--------------SSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred HHHH--------------hHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5441 22333333333334443333 34455677899999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHH-HHHHHHHHHhhcccC
Q 040949 435 MMCHMRAYIFFFFAGW-ILVMGLFALFLLPET 465 (490)
Q Consensus 435 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 465 (490)
+.+..++...+...++ ..+.+++..+.++|+
T Consensus 170 l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 170 IALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9988887655544433 333334444455553
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=117.88 Aligned_cols=161 Identities=12% Similarity=0.042 Sum_probs=119.1
Q ss_pred hchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 287 TGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
.+........|.+..+.+.++.+.++..+...++.+++.++.|+++||+|||+.+..+..+..++..........
T Consensus 13 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~----- 87 (365)
T TIGR00900 13 IGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL----- 87 (365)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 344556667788888889999999999999999999999999999999999999988887777666655443210
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFF 446 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (490)
...+.+..+....+.+.+.+ ...+...+++.|.+|+++|+++.+..+....+|..++|.+.+.+.+..++...+.
T Consensus 88 ----~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 88 ----GGLNIWQVYVLAGILAIAQA-FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred ----CCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11133444444444444433 3345566778899999999999999999999999999999999988888765555
Q ss_pred HHHHHHHHHHH
Q 040949 447 FAGWILVMGLF 457 (490)
Q Consensus 447 ~~~~~~~~~~~ 457 (490)
...+..+...+
T Consensus 163 ~~~~~~~~~~~ 173 (365)
T TIGR00900 163 VDAVGFAISAL 173 (365)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-11 Score=115.34 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=119.7
Q ss_pred hhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCc
Q 040949 290 NAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNT 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
+......|.+.++.|+++.+.+...+...++..+++++.|++.||+|||+.+..+..+.+++.+....
T Consensus 37 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~------------ 104 (394)
T PRK10213 37 FLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF------------ 104 (394)
T ss_pred HHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH------------
Confidence 34444577788889999999999999999999999999999999999999999998888877665543
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHH
Q 040949 370 LTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAG 449 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (490)
.++.+..++.-.+.+.+.+. ..+....++.|.+|+++|+++.++......++..++|.+.+.+.+..++...+....
T Consensus 105 --~~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 181 (394)
T PRK10213 105 --ANSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAA 181 (394)
T ss_pred --HChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 12344444444454544443 345666777899999999999999999999999999999999998888765444433
Q ss_pred HHHHHH-HHHHhhcccC
Q 040949 450 WILVMG-LFALFLLPET 465 (490)
Q Consensus 450 ~~~~~~-~~~~~~~~~~ 465 (490)
+..+.. +......||+
T Consensus 182 ~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 182 VMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 333332 2233345554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=118.06 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=118.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHhhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNI--WMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~ 143 (490)
++.++.+.+.+.+.+.++..++.++.|+++||+|||+.+..+..+.+++.++..+.++. ..+++..++.|++.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence 36788889999999999999999999999999999999999999998888887776643 3355667888998888888
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHH
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFL 205 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 205 (490)
....++.|.+|+++|+++.++.+....+|..++|.+ .....+..||++.|++.+++.++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI--ASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH--HHHHHhhhchhhHHHHHHHHHHHh
Confidence 888999999999999999999999999999999999 444455679999999887766554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-12 Score=120.69 Aligned_cols=168 Identities=14% Similarity=-0.007 Sum_probs=118.8
Q ss_pred chhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 288 GINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
+........|.+.++.+.++.+.+...+...++.++++++.|+++||+|||+.+..+..+.+++...+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~------ 105 (417)
T PRK10489 32 GLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL------ 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc------
Confidence 44566677888888888899999999999999999999999999999999998887776666655544322110
Q ss_pred CcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Q 040949 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFF 447 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (490)
..++.+.......+.+.+.+.. .+.....+.|.+|+++|+++.++.+....++..++|.+.+.+.+..++...+..
T Consensus 106 ---~~~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 106 ---PEPSLLAIYLLGLWDGFFGSLG-VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 1122233333333333333322 333455678999999999999999999999999999999999887776555555
Q ss_pred HHHHHHHHHHHHhhcccC
Q 040949 448 AGWILVMGLFALFLLPET 465 (490)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (490)
.++..+.+.+.....|+.
T Consensus 182 ~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 182 AAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 555555555555556654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-11 Score=114.45 Aligned_cols=166 Identities=7% Similarity=0.037 Sum_probs=120.2
Q ss_pred CCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHH
Q 040949 270 SMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 349 (490)
++++..+...+..+.............|.+.+++|+|..+.+...+...++..++.++.|++.||+|||+.+..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555555555555555667777888889999999999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHH
Q 040949 350 ISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIA 429 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 429 (490)
++.++... .++.+...+...+.+.+.+.. .+.....+.|.+|+++|+.+.+..+....+++.++|
T Consensus 84 i~~~l~~~--------------~~~~~~~~~~~~l~G~~~g~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 84 LAVAGLMF--------------SHSLALFSIAMFVLGVVSGIT-MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred HHHHHHHH--------------cchHHHHHHHHHHHHHhhHhh-ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 76665543 123333344444444444333 334456678999999999999998888888999999
Q ss_pred HHhHHHHHh-hhhHHHHHHHHH
Q 040949 430 QAFLSMMCH-MRAYIFFFFAGW 450 (490)
Q Consensus 430 ~~~~~~~~~-~~~~~~~~~~~~ 450 (490)
.+.+.+.+. .++...+...++
T Consensus 149 ~~~~~l~~~~~gw~~~f~~~~~ 170 (394)
T PRK03699 149 IIAAYLLARSIEWYWVYACIGL 170 (394)
T ss_pred HHHHHHHhccccHHHHHHHHHH
Confidence 998887654 455544444333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=119.49 Aligned_cols=142 Identities=17% Similarity=0.173 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Q 040949 72 ILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSE 151 (490)
Q Consensus 72 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 151 (490)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34667788889999999999999999999999999999988888888888888888899999999999888888888889
Q ss_pred cCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCc
Q 040949 152 IAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITET 215 (490)
Q Consensus 152 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 215 (490)
..|+++|+++.++++....+|..+++.+. ....+..||+..+++.++..++..+..+++++.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLA--GLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999988884 344455789999999888777766655555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=118.05 Aligned_cols=176 Identities=11% Similarity=0.112 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHH---cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc-cCchHHHHHhhHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQT---VGFKNDASLLSSVITGTVNVLSTLVSIYAVDK-VGRRKLLLQACVQM 348 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~ 348 (490)
+.++.+....++...+++....++|.|+++ .|++..+++.......++..++.+++|+++|| +|||+.+..+..+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 445566666666667778888899999865 69999999999999999999999999999999 89999999999888
Q ss_pred HHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccc---hhhHHHHHHHHHHHHH
Q 040949 349 FISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLET---RTAGFAFAVSSNMFFT 425 (490)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~ 425 (490)
+++.+++... .+.+.......+.+.+.+ ...+....+..|.+|++. |+++.++.+...++|.
T Consensus 90 ~~g~~~~~~~--------------~~~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~ 154 (475)
T TIGR00924 90 MLGHFMLAMS--------------IYPDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS 154 (475)
T ss_pred HHHHHHHHhc--------------ccHhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH
Confidence 8887766541 122233333333333332 234555666778888654 8889999999999999
Q ss_pred HHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 040949 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLP 463 (490)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (490)
.++|.+.+.+.++.++...+...++..+.+++.+...+
T Consensus 155 ~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 155 FISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999887766555554444444444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-11 Score=113.94 Aligned_cols=178 Identities=13% Similarity=0.008 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHH
Q 040949 274 LIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQS 353 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 353 (490)
.++......+.............|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 34445555555555556777788889899999999999999999999999999999999999999999998888887776
Q ss_pred HHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 040949 354 TIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (490)
+... .++.+...+...+.+.+.+.. .+.......|.+|+++|+++.+.......++..+++++.+
T Consensus 84 l~~~--------------~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 84 MFTL--------------SSSYLMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT 148 (382)
T ss_pred HHHH--------------hCcHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 6554 123444444444444443322 3344456678899999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHH-HHHHHHHHHhhcccCC
Q 040949 434 SMMCHMRAYIFFFFAGW-ILVMGLFALFLLPETK 466 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 466 (490)
.+.+..++...+...++ ..+..+......||.+
T Consensus 149 ~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 149 YLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 98887776644444333 3333333445567654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=116.15 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhc
Q 040949 73 LQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEI 152 (490)
Q Consensus 73 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 152 (490)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 46667778888899999999999999999999999999999988888888888888999999999998888888899999
Q ss_pred CCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhh
Q 040949 153 APVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSI 210 (490)
Q Consensus 153 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 210 (490)
+|+++|+++.++.+....+|..++|.+ .....+..||+..|.+.+.+.++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~--~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPL--AGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 44455567899999998887776655443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-11 Score=115.74 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHH
Q 040949 274 LIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQS 353 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 353 (490)
.+.......+....+........|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34444444555555556666778889899999999999999999999999999999999999999999888877777666
Q ss_pred HHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 040949 354 TIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (490)
..... ++.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..++|.+.+
T Consensus 84 ~~~~~--------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 84 LCSLA--------------ETSSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred HHHHh--------------CcHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55431 2223333333333333332 23345667789999999999999999999999999999988
Q ss_pred HHHHhhhhHH-HHHHHHHHHHHHHHHHhhcccCCC
Q 040949 434 SMMCHMRAYI-FFFFAGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 434 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
.+.+..++.. +.+.+.+..+..++.....+|+++
T Consensus 149 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 149 LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8877777654 344444444555555556666543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-11 Score=114.77 Aligned_cols=146 Identities=11% Similarity=0.074 Sum_probs=120.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77888999999999999999999999999999999999888777777777777778888888888899998888889999
Q ss_pred HHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCC-CchHHHHHhhHHHHHHHHHHhhcccC
Q 040949 147 LFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHP-HGWRVSLALAGVPAIFLFIGSIVITE 214 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e 214 (490)
+++.|.+|+++|+++.++.+....+|..++|.+++ ...+. .+|...++......++..+..+++.+
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG--QLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh--hhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999954 33333 35666666666555555554444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=116.53 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHH
Q 040949 275 IIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQST 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 354 (490)
.....+..+.............|.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+....+++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444444444444555666677777888999999999999999999999999999999999999999998888887766
Q ss_pred HHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 040949 355 IGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLS 434 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (490)
.... ++.+...+.-.+.+.+.+ ...+....++.|.+|+++|+++.++......+|..+++.+.+.
T Consensus 100 ~~~~--------------~~~~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 100 SGLA--------------SGVIMLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHH--------------hHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 5542 233444444444444433 2344555667899999999999999999999999999999888
Q ss_pred HHHhhhhHHHHHHHHH
Q 040949 435 MMCHMRAYIFFFFAGW 450 (490)
Q Consensus 435 ~~~~~~~~~~~~~~~~ 450 (490)
+.+..++...+.+..+
T Consensus 165 l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 165 FAEAYGWRAAFFVGLL 180 (426)
T ss_pred HcccCCHHHHHHHHHH
Confidence 8877776655544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=117.95 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=108.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGI--SSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+ ....++.+...+.+++.|+.......
T Consensus 289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 368 (467)
T PRK09556 289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL 368 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence 4789999999999999999999999999999999998877655444443322 23345666777888888865443333
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHH-HHHHHHHHHHHhcc----------cCCCchHHHHHhhHHHHHHHHHHhhc
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTI-GIFLANLVNYGTAK----------LHPHGWRVSLALAGVPAIFLFIGSIV 211 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~~~~----------~~~~~wr~~f~~~~~~~~~~~~~~~~ 211 (490)
.......|.+|+++|+++.++.+...++ |..++|.+.+.... ....+|+..|++.++..++..+..++
T Consensus 369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 3446677999999999999999988886 77888888433333 00467999999887776665544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=111.74 Aligned_cols=166 Identities=10% Similarity=0.050 Sum_probs=117.3
Q ss_pred HHhhchhhHHHhHHHHH-HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHh
Q 040949 284 QQFTGINAIMFYAPVLF-QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVH 362 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 362 (490)
....+......+.|.++ ++.|+|..+.++......+...+..++.|+++||+|||+.+..+..+..++.+.....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---- 96 (400)
T PRK11646 21 LVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----
Confidence 33334455555666655 5679999999999999999999999999999999999999998888888877666431
Q ss_pred hccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 363 LKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
++.+...+...+.+.+.+ ...+...+++.|.+|+++|+++.|+.+....++..++|.+.+.+. ..++.
T Consensus 97 ----------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~ 164 (400)
T PRK11646 97 ----------HEPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFR 164 (400)
T ss_pred ----------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHH
Confidence 233334444444444332 234445566789999999999999999999999999999999998 55654
Q ss_pred HHHHH-HHHHHHHHHHHHhhcccC
Q 040949 443 IFFFF-AGWILVMGLFALFLLPET 465 (490)
Q Consensus 443 ~~~~~-~~~~~~~~~~~~~~~~~~ 465 (490)
..+.. +....+..++.....||.
T Consensus 165 ~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 165 LVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44333 333333333444455553
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=119.30 Aligned_cols=139 Identities=12% Similarity=0.051 Sum_probs=114.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh--cchhHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKF--GRKPTIL--VASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
|.+..+.+++.+...++..+++++.|+++||. ++|+... .+.++.+++.++....++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 77899999999999999999999999999973 3443333 3444445556666778899999999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCC-chHHHHHhhHHHHHHHHH
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPH-GWRVSLALAGVPAIFLFI 207 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~ 207 (490)
+...+++.|.+|++++++..++++....+|.++||.+ .+...+.. +|++.|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i--~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL--AGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc--eeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999 55555544 599999988876655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=116.63 Aligned_cols=162 Identities=18% Similarity=0.127 Sum_probs=121.1
Q ss_pred hhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCc
Q 040949 290 NAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNT 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
.......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.......
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 455566677778889999999999999999999999999999999999999988887777766665542
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHH
Q 040949 370 LTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAG 449 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (490)
.+.+...+...+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..++...+...+
T Consensus 80 ---~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 80 ---GAYVSLYILRVLLGAAEAP-FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred ---cCHHHHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 2344444555555555443 345556778899999999999999999999999999999999888877665444443
Q ss_pred HH-HHHHHHHHhhcccCC
Q 040949 450 WI-LVMGLFALFLLPETK 466 (490)
Q Consensus 450 ~~-~~~~~~~~~~~~~~~ 466 (490)
+. .+..++.....+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHhhheecCCC
Confidence 33 333344444455543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-11 Score=115.63 Aligned_cols=177 Identities=16% Similarity=0.077 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
+..+...+..+...........+.|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34555666666666666777888999999999999999998888888889999999999999999999888777766665
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
+.... .++.+..+....+.+.+.+. ..+.....+.|.+|++.|+++.|+.+....++..++|.+.
T Consensus 90 ~~~~~--------------~~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 90 LFCAL--------------SGTLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHH--------------hCCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 54432 12333344444454444432 3445566678999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHH-HHHHHHHHhhccc
Q 040949 433 LSMMCHMRAYIFFFFAGWI-LVMGLFALFLLPE 464 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 464 (490)
+.+.+..++...+...... .+..+......|+
T Consensus 155 g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 155 GLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999888765444443333 3333333334443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-11 Score=118.34 Aligned_cols=177 Identities=14% Similarity=0.045 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
+.+....+..+.............|.+.+++|.+..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34445555555555555666677788888899999999999999999999999999999999999999988888777776
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
+..... .+.+.......+.+.+.+ ...+....++.|.+|++.|+++.++.+....+|..+++.+.
T Consensus 100 ~~~~~~--------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 100 LACGFA--------------PGYWTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHH--------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665542 233334444444444333 23344456678999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhccc
Q 040949 433 LSMMCHMRAYIFFFFAGWILVMGLFALFLLPE 464 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (490)
+.+.+..++...+.+..+..+..++.....||
T Consensus 165 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~ 196 (496)
T PRK03893 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPE 196 (496)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99988777765555444333333333333444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-11 Score=113.90 Aligned_cols=149 Identities=8% Similarity=0.026 Sum_probs=109.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHhhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSG---A-LNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~~~~~ 142 (490)
|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 556666666666667777888999999999999999998887766655443322 1 234455556777788888888
Q ss_pred hhHHHHhhhcCCCCccchHHhHHH-HHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCc
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQ-LFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITET 215 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 215 (490)
+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+..........+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888999999999999988888854 4455888899988544433333468888888777777766666666664
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=110.27 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=122.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
+|.++.++|.+.+...++..++.++.+++.||+|+|+.+.++.+..++..+..+++++.+.+++.+++.|+..+...+..
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccchHHhHHH-HHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH
Q 040949 146 PLFLSEIAPVQHRGAVNILFQ-LFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG 208 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 208 (490)
..++.+. |+++|++..++++ ...++|..+++.++ +...+..|+ ..|++.+.++++..++
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~--G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA--GFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999998 9999999999986 57789999999995 444555676 6677777766655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=112.46 Aligned_cols=177 Identities=11% Similarity=0.002 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHH
Q 040949 275 IIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQST 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 354 (490)
++...+...+............|.+.++.|.|+.+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33333333333333344445568888889999999999999999999999999999999999999998887777666555
Q ss_pred HHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 040949 355 IGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLS 434 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (490)
.... ++.+..+....+.+.+.+ ...+....+..|.+++++++.+.+..+....++..++|.+.+.
T Consensus 90 ~~~~--------------~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 154 (394)
T PRK11652 90 ALFA--------------HSLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGL 154 (394)
T ss_pred HHHH--------------ccHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4331 223333333333333322 2233444556788888899999999999999999999999999
Q ss_pred HHHhhhhHHHHHHH-HHHHHHHHHHHhhcccCC
Q 040949 435 MMCHMRAYIFFFFA-GWILVMGLFALFLLPETK 466 (490)
Q Consensus 435 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 466 (490)
+.+..++...+... ....+...+.....||++
T Consensus 155 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 155 LTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 88877765444443 333334444455566654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=114.56 Aligned_cols=178 Identities=14% Similarity=0.040 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
..+...++..+....-......-.|.+.++.|.+..+.++....+.++...+.+..|+++||+|||+.+..+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34555566666666666777788899999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccccccccc-CCccchhhHHHHHHHHHHHHHHHHHHH
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSET-FPLETRTAGFAFAVSSNMFFTFLIAQA 431 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (490)
+.... .++.+..++.-.+.+.+.+.. .+.....+.+. .|+++|+++.|+......+|..++|.+
T Consensus 86 ~~~~~--------------a~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 86 LAAAF--------------SPTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHH--------------cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77664 234444455445555544432 33333333454 477899999999999999999999999
Q ss_pred hHHHHHhhhhHHHHHHH-HHHHHHHHHHHhhcccC
Q 040949 432 FLSMMCHMRAYIFFFFA-GWILVMGLFALFLLPET 465 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 465 (490)
.+.+.++.+|...+... .+..+..++....+|+.
T Consensus 151 gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 151 GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999988866544443 33344444444555654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=110.31 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=117.7
Q ss_pred HHHHHHHhhchhhHHHhHHHHHHHcCCCCch-----hHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHH
Q 040949 279 LLQVFQQFTGINAIMFYAPVLFQTVGFKNDA-----SLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQS 353 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 353 (490)
.+..+...........++|.+.++.|.+..+ .+...+...+...++.++.|+++||+|||+.+..+.....++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 3344444445566677889999888888655 37778888889999999999999999999999887777666655
Q ss_pred HHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 040949 354 TIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (490)
+.... .+.+..++...+.+.+. +..+.......+.+|+++|+++.++.+....++..++|.+.+
T Consensus 100 ~~~~~--------------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 163 (408)
T PRK09874 100 LMGLA--------------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG 163 (408)
T ss_pred HHHHH--------------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 54431 22333333333333322 233444556678899999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHH-HHHHHHHHHHHHhhcccC
Q 040949 434 SMMCHMRAYIFFFF-AGWILVMGLFALFLLPET 465 (490)
Q Consensus 434 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 465 (490)
.+.+..++...+.. +.+..+..+......+|+
T Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 164 LLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99887776544443 333344444444555554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=116.82 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
+.++...+................|.+.+ .|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 33444444444444444445556676554 69999999999999999999999999999999999998888777777766
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
+....... ...+.+.......+.+.+.+.. .+.....+.|.+|+++|+++.++.++...+++.+++.+.
T Consensus 106 ~~~~~~~~----------~~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 106 LLMGFVPW----------ATSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHhcccc----------ccchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 55433110 0112222233333444443333 233345567899999999999999999999999999888
Q ss_pred HHHHHh-hhhHHHHHH-HHHHHHHHHHHHhhcccC
Q 040949 433 LSMMCH-MRAYIFFFF-AGWILVMGLFALFLLPET 465 (490)
Q Consensus 433 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 465 (490)
+...+. .++...+.. +.+..+..++..++.||+
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 765543 455544444 444444444555556654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=111.52 Aligned_cols=176 Identities=10% Similarity=0.121 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc-cCchHHHHHhhHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDK-VGRRKLLLQACVQMFI 350 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 350 (490)
+.++..+...+.....++....+++.|++ +.|++..++............+..+++|+++|| +|||+.+..+.++..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 44555555566666777888888888875 469999998888888877777778899999999 9999999999999988
Q ss_pred HHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCcc--chhhHHHHHHHHHHHHHHHH
Q 040949 351 SQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLE--TRTAGFAFAVSSNMFFTFLI 428 (490)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~ 428 (490)
+.+.+.+. ........+...+.+.+.+ ...|....++.|.+|++ +|+.+.++.+...++|..++
T Consensus 94 g~~~~~~~-------------~~~~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 94 GYFMTGMS-------------LLKPDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHh-------------ccchhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 88776642 1111222233344443333 33455567788999877 45778999999999999999
Q ss_pred HHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 040949 429 AQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (490)
|.+.+++.++.+|...+....+..+.+++.+...
T Consensus 160 ~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 160 LSLAPVIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998887655555544444444444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=114.63 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=116.8
Q ss_pred chhhHHHhHH-HHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 288 GINAIMFYAP-VLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 288 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
.........| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~--------- 81 (352)
T PF07690_consen 11 GFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF--------- 81 (352)
T ss_dssp HHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh---------
Confidence 3445566667 566777999999999999999999999999999999999999999888888887444432
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHH-HH
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYI-FF 445 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 445 (490)
. ++.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++.. ++
T Consensus 82 ----~-~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~ 155 (352)
T PF07690_consen 82 ----A-SNFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL 155 (352)
T ss_dssp ----H-CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred ----h-hhHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence 1 233344444455554443 3355667778899999999999999999999999999999999887777553 44
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 040949 446 FFAGWILVMGLFALFLLPE 464 (490)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~ 464 (490)
+.+....+..++...+.++
T Consensus 156 ~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHCCC--
T ss_pred cccchhhhhhhhHhhhhhh
Confidence 4444444443333344443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.1e-11 Score=117.46 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHH
Q 040949 275 IIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQST 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 354 (490)
+..+.+..+.............|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34444455555555567777889999999999999999999999999999999999999999999999888887777666
Q ss_pred HHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 040949 355 IGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLS 434 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (490)
... .++.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++......++..++|.+.+.
T Consensus 84 ~~~--------------~~~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 84 CGV--------------APNLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HhC--------------cCCHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 543 1233444444444444433 3345666778899999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHH-HHHHHHHHHHHHhhcccC
Q 040949 435 MMCHMRAYIFFFF-AGWILVMGLFALFLLPET 465 (490)
Q Consensus 435 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 465 (490)
+.++.++...+.. ..+..+..++..+..|++
T Consensus 149 l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 149 IIENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 9888776544333 333333333444455554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=115.31 Aligned_cols=163 Identities=15% Similarity=0.035 Sum_probs=118.4
Q ss_pred chhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 288 GINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
....+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 80 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--------- 80 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh---------
Confidence 34566667788888889999999999999999999999999999999999999999888887777666542
Q ss_pred CcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHH-HhHHHHHhhhhHHHHH
Q 040949 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQ-AFLSMMCHMRAYIFFF 446 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 446 (490)
.+.+..++...+.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..++++ +.+.+.+..++...+.
T Consensus 81 -----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 -----TSLWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred -----hhHHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 233344444444444433 335566677889999999999999999999999999995 5555555555544333
Q ss_pred -HHHHHHHHHHHHHhhcccC
Q 040949 447 -FAGWILVMGLFALFLLPET 465 (490)
Q Consensus 447 -~~~~~~~~~~~~~~~~~~~ 465 (490)
.+.+..+..++.....+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHHHHHHHheeeCCC
Confidence 3334444444555555554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=109.03 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHH
Q 040949 277 GVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIG 356 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 356 (490)
.+.+..+....+........+.+.++.+.++.+.++......+...+..++.|+++||+|||+++..+..+.+++.+.+.
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 33444444333333444555566778888888889999999999999999999999999999999999888877665543
Q ss_pred HHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040949 357 GMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMM 436 (490)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (490)
.. .+. +....+.+.+. ....|...+++.|.+|+++|+++.|+.+....++..++|.+.|.+.
T Consensus 87 ~~--------------~~~---~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 87 FG--------------IHP---LLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HH--------------HHH---HHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 111 22223333332 2446677788899999999999999999999999999999999998
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 437 CHMRAYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
+.. +...+.....+.+.+.+....+||.
T Consensus 149 ~~~-~~~~~~i~~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 149 DPH-AEAALAVCALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 865 3322223222333334444556654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-08 Score=96.35 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCC
Q 040949 77 TSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQ 156 (490)
Q Consensus 77 ~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 156 (490)
.++-+....+++++.+.+.|+.|+|..+.++......-.+..-+. |-+.++++..+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 778888889999999999999999999999999988776665544 5667888999999999999999999999999999
Q ss_pred ccchHHhHHHHHHHHHHHHHHHH
Q 040949 157 HRGAVNILFQLFVTIGIFLANLV 179 (490)
Q Consensus 157 ~r~~~~~~~~~~~~~G~~i~~~~ 179 (490)
++.+..++.-.....+.++|..+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHh
Confidence 99999999999999999998776
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-10 Score=110.46 Aligned_cols=139 Identities=10% Similarity=-0.026 Sum_probs=97.5
Q ss_pred HHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHH
Q 040949 282 VFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLV 361 (490)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 361 (490)
.+...........+.|.+.+++|++..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.++....
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--- 121 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--- 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 33333344555666778888899999999998888888999999999999999999999888777666665544431
Q ss_pred hhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040949 362 HLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMM 436 (490)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (490)
.+.+..++...+.+.+.+ ...+ ...++.|.+|+++|+++.|+.+....+|+.+++.+.+.+.
T Consensus 122 -----------~s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~ 183 (476)
T PLN00028 122 -----------SSATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF 183 (476)
T ss_pred -----------cCHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333333332 2222 2345679999999999999998888888887776665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=108.63 Aligned_cols=162 Identities=9% Similarity=-0.020 Sum_probs=115.0
Q ss_pred hhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccC
Q 040949 289 INAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSN 368 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (490)
...+....|.+.+++|.+..+.++..+...++..++++..|+++||+|||+.+.........+.. ...
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~----------- 74 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL----------- 74 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-----------
Confidence 34556677888899999999999999999999999999999999999998876544333322211 111
Q ss_pred cccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH-
Q 040949 369 TLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFF- 447 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 447 (490)
...+....+..-.+.+.+.+. .+.......|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|...+..
T Consensus 75 --~~~~~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 75 --DPFNYEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred --HhccHHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 112334444444554444332 222334447899999999999999999999999999999999888887755555
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 040949 448 AGWILVMGLFALFLLPETK 466 (490)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (490)
+.+..+..++..+.+||.+
T Consensus 151 ~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 5555555555666777754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=109.13 Aligned_cols=158 Identities=7% Similarity=-0.004 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
+......+..+....+......+.+.++++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 33444444444444444555667788888899999999999999999999999999999999999999998888777765
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHH-HHHHHH
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT-FLIAQA 431 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~ 431 (490)
++...... ...+.+.......+.+.+.+.. .+.......+.+|+++|++++|+.+....+|. ..+|.+
T Consensus 93 ~~~~~~~~----------~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~ 161 (402)
T TIGR00897 93 AAFIVFGL----------GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY 161 (402)
T ss_pred HHHHHHhc----------cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322110 1122333333333333333222 22333445688899999999999999998886 578888
Q ss_pred hHHHHHhhhh
Q 040949 432 FLSMMCHMRA 441 (490)
Q Consensus 432 ~~~~~~~~~~ 441 (490)
.+.+.+..++
T Consensus 162 ~~~l~~~~g~ 171 (402)
T TIGR00897 162 SSYAIPAFGE 171 (402)
T ss_pred HHhcccccch
Confidence 8888776663
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.6e-11 Score=112.30 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=118.3
Q ss_pred hHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcc
Q 040949 291 AIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTL 370 (490)
Q Consensus 291 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (490)
......|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..++.......
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------ 76 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------ 76 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 34456678888899999999999999999999999999999999999999988888877777666542
Q ss_pred cchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH-HHH
Q 040949 371 TTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFF-FAG 449 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 449 (490)
.+.+.......+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..++...+. .+.
T Consensus 77 --~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 77 --QTIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred --ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 223333344444444333 2234455677899999999999999999999999999999999988777654443 344
Q ss_pred HHHHHHHHHHhhcccC
Q 040949 450 WILVMGLFALFLLPET 465 (490)
Q Consensus 450 ~~~~~~~~~~~~~~~~ 465 (490)
+..+..++.....||+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 154 AAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 4444444445556664
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-10 Score=106.57 Aligned_cols=145 Identities=13% Similarity=0.025 Sum_probs=106.2
Q ss_pred HHHHHHHHhhchhhHHHhHHH-HHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHH
Q 040949 278 VLLQVFQQFTGINAIMFYAPV-LFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIG 356 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 356 (490)
..+..+...........+.|. +.++.|++..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 444444445556677788885 5577899999999999999999999999999999999999999998888887776665
Q ss_pred HHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040949 357 GMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMM 436 (490)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (490)
.. ..+.+...+...+.+.+ ... .+....++.|.+|+++|+++.++......+|..+++.+.+.+.
T Consensus 86 ~~-------------~~~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 86 LA-------------VQSYSVLLLLRLFIGIA-GGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HH-------------hhhHHHHHHHHHHHHHh-chh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 42 10233333333333333 222 2334566789999999999999998888888887777776665
Q ss_pred H
Q 040949 437 C 437 (490)
Q Consensus 437 ~ 437 (490)
+
T Consensus 151 ~ 151 (366)
T TIGR00886 151 G 151 (366)
T ss_pred H
Confidence 4
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-10 Score=110.04 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=107.2
Q ss_pred HHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCccc
Q 040949 292 IMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLT 371 (490)
Q Consensus 292 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
+....|.+.++ |++..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+...+... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~----------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW----------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc----------c
Confidence 45567776666 999999999999999999999999999999999999999888877777766554210 0
Q ss_pred chhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHH-HHHH
Q 040949 372 TTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFL-SMMCHMRAYIFF-FFAG 449 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 449 (490)
..+.+..+....+.+.+.+.. .+.....+.|.+|+++|+++.|+.+....+++.+.+++.+ .+....++...+ +.+.
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHhcc-chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 112233333334444444333 3333345578899999999999998888888755444433 232223444333 3334
Q ss_pred HHHHHHHHHHhhcccC
Q 040949 450 WILVMGLFALFLLPET 465 (490)
Q Consensus 450 ~~~~~~~~~~~~~~~~ 465 (490)
+..+..++..+++||+
T Consensus 196 ~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 196 AAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHccCC
Confidence 4444445555666654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=108.40 Aligned_cols=152 Identities=12% Similarity=-0.038 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
+.++.+.+..+...........+.|.+.++.|.|..+.++..+...++..+++++.|+++||+|||+.+..+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677788889999999999999999999999999999999999999999999999998888877776
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
...... ++.+...+...+.+.+.+.. .+.......+..|+++|+++.+..+....+|..+++.+.
T Consensus 86 ~~~~~~--------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 86 AGLGLM--------------VGFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHh--------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655431 23344444444444443322 333333445778888999999999999999999999999
Q ss_pred HHHHHhh
Q 040949 433 LSMMCHM 439 (490)
Q Consensus 433 ~~~~~~~ 439 (490)
+.+.+..
T Consensus 151 ~~l~~~~ 157 (381)
T PRK03633 151 SKVSTEL 157 (381)
T ss_pred hcccccc
Confidence 9887653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=108.60 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=116.1
Q ss_pred hchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 287 TGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
.....+....|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 98 (406)
T PRK15402 27 IANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-------- 98 (406)
T ss_pred hhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 344445555677778889999999999999999999999999999999999999988877777766655431
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFF 446 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (490)
++.+..+....+.+.+.+ ...+.....+.|.+|++.|.++.++......++..++|.+.+.+.+..++...+.
T Consensus 99 ------~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~ 171 (406)
T PRK15402 99 ------QSIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV 171 (406)
T ss_pred ------ccHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 223333333333333332 2234455667899999999999999888888899999999999888777654444
Q ss_pred H-HHHHHHHHHHHHhhcccCC
Q 040949 447 F-AGWILVMGLFALFLLPETK 466 (490)
Q Consensus 447 ~-~~~~~~~~~~~~~~~~~~~ 466 (490)
+ +.+..+..+......||++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 172 LFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 4 3333444333445566654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=108.18 Aligned_cols=159 Identities=13% Similarity=0.057 Sum_probs=114.1
Q ss_pred HHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccc
Q 040949 293 MFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTT 372 (490)
Q Consensus 293 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (490)
..-+|.+.+++|.+..+.+...+.+.++..+++++.|+++||+|||+.+..+..+..++.+.... .
T Consensus 36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------------a 101 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF--------------T 101 (413)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH--------------c
Confidence 33345666778999999999999999999999999999999999999998887777776655543 1
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHH-
Q 040949 373 TQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWI- 451 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 451 (490)
++.+..++.-.+.+.+.+ ...+.......|.+|+++++++.++.+....++..++|.+.+.+.+..++...+...++.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 102 TSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 233344444444444333 223344566789999999999999999999999999999998888877766544444433
Q ss_pred HHHHHHHHhhcccCC
Q 040949 452 LVMGLFALFLLPETK 466 (490)
Q Consensus 452 ~~~~~~~~~~~~~~~ 466 (490)
.+..+...+..||++
T Consensus 181 ~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 181 LIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHhCCCCc
Confidence 333333345567754
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-10 Score=106.53 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=108.7
Q ss_pred hHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchh
Q 040949 295 YAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQ 374 (490)
Q Consensus 295 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (490)
..|.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+..... .+
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------------~~ 93 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--------------ES 93 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh--------------cC
Confidence 3344567789999999999999999999999999999999999999988877776665554431 22
Q ss_pred hHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHH
Q 040949 375 AGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVM 454 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (490)
.+...+...+.+.+.+.. .+.......|.+|+++++...+..+....++..++|.+.+.+.+..++...+....+..+.
T Consensus 94 ~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333333333333332222 2333456678999998899999888888999999999999999888876544443333333
Q ss_pred HHHHHhhcccC
Q 040949 455 GLFALFLLPET 465 (490)
Q Consensus 455 ~~~~~~~~~~~ 465 (490)
..+.....++.
T Consensus 173 ~~~~~~~~~~~ 183 (401)
T PRK11043 173 LILPTLRLKPS 183 (401)
T ss_pred HHHHHHHcCCC
Confidence 33333444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=113.50 Aligned_cols=162 Identities=17% Similarity=0.059 Sum_probs=113.1
Q ss_pred HHHhHHHHHHHcCCC--------CchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhh
Q 040949 292 IMFYAPVLFQTVGFK--------NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHL 363 (490)
Q Consensus 292 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (490)
.....|....+.+.+ ..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---- 122 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---- 122 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 333445555555544 78899999999999999999999999999999999888888777766664321
Q ss_pred ccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh---HHHHHhhh
Q 040949 364 KATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF---LSMMCHMR 440 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 440 (490)
...+.+..++...+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+. +...+..+
T Consensus 123 -------~~~~~~~~~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 194 (481)
T TIGR00879 123 -------FALSVEMLIVGRVLLGIGVGI-ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194 (481)
T ss_pred -------cccchHHHHHHHHHHHhhhhH-HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 112223444444555554443 3445567788999999999999999999999999999987 44434455
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 441 AYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
+...+...++..+..++..+++||+
T Consensus 195 w~~~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 195 WRIPLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5544544555555555555566664
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-10 Score=100.92 Aligned_cols=178 Identities=13% Similarity=0.036 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
+.++...+.....+.....+....+.+-++.|+|+.|.+++.++..+.+.+.++..|.+.||+|.|+....+.++..+..
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~ 93 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC 93 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence 44444444444444444555555566667889999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
+.+.+.. ..++.+..+.+..+. +...+...+....+++.+|++++|.+.|+.. .+++|..+...+.
T Consensus 94 ~~~~~a~-----------~~~~~~~ll~~gll~--G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 94 LGLAFAV-----------TYPSTWQLLVIGLLL--GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred HHHHHHc-----------cCCchHHHHHHHHHH--hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence 7776643 122222333222222 2233445566677899999999999999998 9999999999999
Q ss_pred HHHHHhhh---hH-HHHHHHHHHHHHHHHHHhhccc
Q 040949 433 LSMMCHMR---AY-IFFFFAGWILVMGLFALFLLPE 464 (490)
Q Consensus 433 ~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 464 (490)
+.+....+ +. ...++...+.+..+..++...+
T Consensus 160 P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 160 PLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 98888877 44 3344444444445555555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=105.03 Aligned_cols=147 Identities=8% Similarity=-0.071 Sum_probs=109.4
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHH
Q 040949 278 VLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGG 357 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 357 (490)
....++.............|.+.++.|.+..+.++..+...++..++.+..|++.||+|||+.+..+..+.+++.++...
T Consensus 8 ~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~ 87 (410)
T TIGR00885 8 ITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWP 87 (410)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33334433334455557778888888999999999999999999999999999999999999999999988888766533
Q ss_pred HHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040949 358 MLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMM 436 (490)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (490)
.. ..++.+..+....+.+.+.+.. .+....++.+..|+++|++..++.+....+|..++|.+.+.+.
T Consensus 88 ~~-----------~~~~~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 88 AA-----------EIMNYTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HH-----------hhccHHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1123334444445555554433 3333455678889999999999999999999999999988775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-09 Score=102.10 Aligned_cols=151 Identities=12% Similarity=0.024 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHH-HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQ-TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFIS 351 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 351 (490)
+.++...+.....+..........+.+.+ ++|+|..+.++..++..+...++++..|++.||+|.|+....+..+..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44555555454444444444444555555 68999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 040949 352 QSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQA 431 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (490)
.+...+... + ..++.+..++...+.+.+ +. ..+.....+++.+|+++||++.|+....+++|..+++.+
T Consensus 114 ~~~~~~a~~--------~-~~~s~~~lli~r~l~Gig-g~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 114 CVWLGIAVQ--------N-PNTPFGIFIVIALLCGFA-GA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHc--------c-cCCCHHHHHHHHHHHHHH-HH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 665554210 0 012333444444444443 32 334455667899999999999999977777777666555
Q ss_pred hHH
Q 040949 432 FLS 434 (490)
Q Consensus 432 ~~~ 434 (490)
.+.
T Consensus 183 ~p~ 185 (462)
T PRK15034 183 APL 185 (462)
T ss_pred HHH
Confidence 544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-10 Score=109.11 Aligned_cols=160 Identities=16% Similarity=0.052 Sum_probs=104.8
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHH
Q 040949 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVC 383 (490)
Q Consensus 304 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (490)
+.+..+.++..+...++.+++.++.|+++||+|||+.+..+..+..++.+............ ...........++.-.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI--GPDNTGYVPEFVIYRI 128 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc--cccchhHHHHHHHHHH
Confidence 77888899999999999999999999999999999999998888777665554311000000 0000111222233334
Q ss_pred HHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH--------HhhhhHHHHHHHHHHHHHH
Q 040949 384 LFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMM--------CHMRAYIFFFFAGWILVMG 455 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 455 (490)
+.+.+.+ ...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+. +..+|...+...++..+..
T Consensus 129 l~G~~~g-~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 207 (479)
T PRK10077 129 IGGIGVG-LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF 207 (479)
T ss_pred HHhhhHh-HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence 4444433 335566677899999999999999999888888888766554432 2335554444444444444
Q ss_pred HHHHhhcccCC
Q 040949 456 LFALFLLPETK 466 (490)
Q Consensus 456 ~~~~~~~~~~~ 466 (490)
.+..+++||+.
T Consensus 208 ~~~~~~l~~s~ 218 (479)
T PRK10077 208 LMLLYFVPETP 218 (479)
T ss_pred HHHHHcCCCCc
Confidence 45556677754
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=109.86 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=105.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH--HHHhh--hhhHHHHHHHHHHhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGA--GISSG--ALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~ 141 (490)
+|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. ....+ .++.+.+.+..++.|++.+..
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999999999999999998876555444333 22222 246777778889999999999
Q ss_pred hhhHHHHhhhcCCCCccchHHhH-HHHHHHHHHHHHHHHHHHhcccCCCc-hHHHHHhhHHHHH
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNIL-FQLFVTIGIFLANLVNYGTAKLHPHG-WRVSLALAGVPAI 203 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~ 203 (490)
.+...+++.|.+|+++|+++.++ .+.+..+|..++|.++ ....+..| |++.++...+..+
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~--g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA--AALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH--HHHHHHcCcchhHHHHHHHHHH
Confidence 99999999999999999999998 4566678888999984 34444455 8887776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=105.93 Aligned_cols=164 Identities=10% Similarity=0.052 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHH-HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc-cCchHHHHHhhHHHHHH
Q 040949 274 LIIGVLLQVFQQFTGINAIMFYAPVLF-QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDK-VGRRKLLLQACVQMFIS 351 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~ 351 (490)
.++..+...++...+++....+++.++ +++|++..+++..............+++|+++|| +|||+.+..+..+.+++
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 355555566666667778888888888 5569998888777766655555556789999999 59999999998888877
Q ss_pred HHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccc--hhhHHHHHHHHHHHHHHHHH
Q 040949 352 QSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLET--RTAGFAFAVSSNMFFTFLIA 429 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~ 429 (490)
..++... ....+...+...+.+.+.+. ..+....+..|.+|++. |+.+.++.+...++|..++|
T Consensus 102 ~~l~~~~-------------~~~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp 167 (500)
T PRK09584 102 YALVAWS-------------GHDAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM 167 (500)
T ss_pred HHHHHHh-------------cccHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence 6655431 11222223333344444332 24455566789988653 45678888999999999999
Q ss_pred HHhHHHHHhhhhHHHHHHHHHH
Q 040949 430 QAFLSMMCHMRAYIFFFFAGWI 451 (490)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~ 451 (490)
.+.+++.+..++...+...++.
T Consensus 168 ~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 168 LATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred HHHHHHHHhhCHHHHHHHHHHH
Confidence 9999999988876555554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=103.94 Aligned_cols=138 Identities=12% Similarity=-0.019 Sum_probs=109.6
Q ss_pred hhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCc
Q 040949 290 NAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNT 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
.......|.+.+++|+|..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.+...+.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence 456677888989999999999999999999999999999999999999999999999999988877752
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh-hhHH
Q 040949 370 LTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM-RAYI 443 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 443 (490)
++.+..+..-.+.+.+.+.. .+....++.+.+| ++|+.+++........|..+++.+.+.+.++. ++..
T Consensus 95 ---~~~~~ll~~r~l~Gig~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 95 ---PQSALLLSSALLGGVGIGII-QAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred ---cchHHHHHHHHHHHhHHHHH-hhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 23344444555555554433 3344556678887 77999999999999999999999999888765 4443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-10 Score=105.98 Aligned_cols=173 Identities=14% Similarity=0.063 Sum_probs=117.2
Q ss_pred HHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc-----CchH-HHHHhhHHHHHHHH
Q 040949 280 LQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV-----GRRK-LLLQACVQMFISQS 353 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~-~~~~~~~~~~~~~~ 353 (490)
..++.+.........-+|.++++.|+|.++.|+....... .+..++.|+++||+ |||| .+..+..+.+++..
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 3345555566777788899999999999999988665554 57789999999999 7765 56666666666555
Q ss_pred HHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 040949 354 TIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (490)
.+.+.. +..+.+.......+.. .......+...+++.|.+|+++|+++.++......++..+++.+.+
T Consensus 84 ~l~~~~-----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 84 AMAFCP-----------PHAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHhcC-----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 544310 1122333333323333 3333345566778899999999999999999988999999999998
Q ss_pred HHHHhh-hhHHHHHHHHHHHHHHHHHHhhcccCC
Q 040949 434 SMMCHM-RAYIFFFFAGWILVMGLFALFLLPETK 466 (490)
Q Consensus 434 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (490)
.+.+.. ++...+.+.++..+...+..+..||++
T Consensus 152 ~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 152 WLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 888753 666555544444444444445566553
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.5e-10 Score=108.61 Aligned_cols=148 Identities=13% Similarity=0.140 Sum_probs=113.8
Q ss_pred cCCCchHHHHHHH-HHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHHhhhhhhh
Q 040949 66 CKYDNQILQLFTS-SLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGIS---SGA-LNIWMLIIGRILLGIGVGF 140 (490)
Q Consensus 66 ~~~s~~~~g~~~s-~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~~~ 140 (490)
+|+|.++.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-++..+..|.
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~ 332 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM 332 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3789999999984 6668999999999999999999998877666655544332 232 3555555566776666666
Q ss_pred hhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCc
Q 040949 141 GNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITET 215 (490)
Q Consensus 141 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 215 (490)
..+...++..+..+++.+++..++.+...++|..+++.++ +...+..||+..|.+.++.+++.++...+++++
T Consensus 333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~--G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVA--GWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677788899999999999999999999999988887773 444455689999999888888876666555543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=101.85 Aligned_cols=136 Identities=12% Similarity=0.091 Sum_probs=114.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.++.++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHhhhcCCCCccchHHhHHH-HHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHH
Q 040949 147 LFLSEIAPVQHRGAVNILFQ-LFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLF 206 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 206 (490)
.++.+. +++++++..+... ...++|..+||.+ ++...+..|+ ..++..+++.++.+
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i--~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL--SGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccH-HHHHHHHHHHHHHH
Confidence 998887 5666788888876 5567888999999 4444555676 46666666555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-09 Score=104.44 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=126.8
Q ss_pred cccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhh
Q 040949 266 MKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQAC 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 345 (490)
+|++.++..+..-.+..+. ......-.+.+..+..-|+...+++.....+..++..+++|.++||++||++++.+-
T Consensus 7 lr~~~Fr~lw~a~~iS~lG----~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 7 LRNRNFRRLWIAQLISNLG----DWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred ccCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 4454444444444443333 333344445555566667888888888888888999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHH
Q 040949 346 VQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFT 425 (490)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 425 (490)
.+.++..+.+.+.... ...+.+..+...++.+.+ .....|...+.+.|++|+++...++++.+...++..
T Consensus 83 ~~~~~~~~~L~~l~~~---------~~~~~~~Ll~~~fl~g~~-~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar 152 (524)
T PF05977_consen 83 LLRALVALLLAVLAFF---------GLLSPWLLLILTFLLGIG-SAFFNPAWQAIIPELVPKEDLPAANALNSISFNIAR 152 (524)
T ss_pred HHHHHHHHHHHHHHHh---------CcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH
Confidence 8877766666554331 122334444444444443 334467777888999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 040949 426 FLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLP 463 (490)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (490)
.+||.+.|.+....|....+.+-+++.+..+......+
T Consensus 153 ~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 153 IIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999988866555555555555544444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-09 Score=103.53 Aligned_cols=151 Identities=18% Similarity=0.120 Sum_probs=104.9
Q ss_pred CCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHH
Q 040949 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLF 385 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (490)
+..+.+...+...++.+++.++.|++.||+|||+.+..+.++..++.++...... .....+....++.-.+.
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG--------SSPKSVMATLCFWRFWL 125 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC--------cccchHHHHHHHHHHHH
Confidence 3445678888889999999999999999999999998888877777665543210 00000123444455555
Q ss_pred HHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh-----------------------hhhH
Q 040949 386 VMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH-----------------------MRAY 442 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~ 442 (490)
+.+.+.. .+....++.|.+|++.|+++.++.+....+|..+++.+...+... .+|.
T Consensus 126 G~~~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIGGD-YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHhhh-hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 5554433 455567889999999999999999999999998888877655321 1455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC
Q 040949 443 IFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
..+.+.++..+...+..+++||+
T Consensus 205 ~~~~~~~ip~~i~~~~~~~lpES 227 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLTIPET 227 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 55555555555555566678886
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=104.07 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=129.3
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcch--hHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHH
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRK--PTILVASSFFLAGAGISSG--------ALNIWMLIIGRI 132 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~ 132 (490)
++++|++..+...+.-+..+..++|++++|++.||+|.| +++..+..++.+..+...+ .++.+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 445699999999999999999999999999999999999 8999888888666666555 678889999999
Q ss_pred HhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc
Q 040949 133 LLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI 212 (490)
Q Consensus 133 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 212 (490)
+.|+..|...+...++.+|..|+++.+..+|++....-....+||.+-+...... .+-|..+....++.++.+++.+++
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t-g~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT-GSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999844333332 357888888777777766666666
Q ss_pred cCc
Q 040949 213 TET 215 (490)
Q Consensus 213 ~es 215 (490)
+++
T Consensus 468 ~~~ 470 (477)
T PF11700_consen 468 DVE 470 (477)
T ss_pred cch
Confidence 543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=107.37 Aligned_cols=136 Identities=17% Similarity=0.111 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHhhhhhhhhhhhHHHHhhhcCC
Q 040949 77 TSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNI--WMLIIGRILLGIGVGFGNEAVPLFLSEIAP 154 (490)
Q Consensus 77 ~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 154 (490)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556677888999999999999999999999999988888776644 555566677778888888899999999999
Q ss_pred CCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 155 VQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 155 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
.+.|++++++.+....+|.+++|.+.. ....++..++++.+...++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY----LGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999854 2234677888888888777777777889874
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-10 Score=111.59 Aligned_cols=150 Identities=13% Similarity=0.009 Sum_probs=107.1
Q ss_pred HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 302 TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 302 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
+++++..+.+...+...++..++.++.|++.||+|+|+.+..+..+..++.++..... ....+..++.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA------------GGGIALVVFC 137 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH------------HcCchHHHHH
Confidence 4578888899999999999999999999999999999999888777666655543211 1122333333
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh-hhHHHHHHHHHH-HHHHHHHH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM-RAYIFFFFAGWI-LVMGLFAL 459 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~ 459 (490)
-.+.+.+.+ ...+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. ++...+.+.++. ++..++.+
T Consensus 138 r~~~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 138 RVIQGLAQG-SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHhcc-cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 444444433 345566677899999999999999999999999999999999998874 765444443333 33333333
Q ss_pred hhccc
Q 040949 460 FLLPE 464 (490)
Q Consensus 460 ~~~~~ 464 (490)
...++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 34443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-09 Score=91.69 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=115.3
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHhhh
Q 040949 64 NYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA-------LNIWMLIIGRILLGI 136 (490)
Q Consensus 64 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~ 136 (490)
+.+|+|.+|...+.+.-.+|..+ +++.|.+.|++|++.++.+|.+...+|..+...+ .++|.+.+..++.|.
T Consensus 30 ~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~ 108 (250)
T PF06813_consen 30 SRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN 108 (250)
T ss_pred HHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc
Confidence 34588999999999999999987 5889999999999999999999999998887664 467889888999999
Q ss_pred hhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 137 GVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
+.+...........+.+| ++||++.++.-...+++..+-..+...... ...-+..+.....+.++.++..+++++.|
T Consensus 109 s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~--~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 109 SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG--DDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 988777777777778887 689999999999999999887777433333 22334444444444444455555555443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-09 Score=102.36 Aligned_cols=168 Identities=11% Similarity=0.103 Sum_probs=109.5
Q ss_pred hchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 040949 287 TGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
...+.+..+.|.+.+++|++..+.+........ .....++.|++.||+|+|+.+.++.++..++.++.++....
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~----- 114 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE----- 114 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 345677788888888899999998887765333 33456678999999999999999999999988877763210
Q ss_pred cCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Q 040949 367 SNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFF 446 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (490)
. ...+.+...+..++.+.+.+.. .+.....+.+.+| +.||++.|+......+|+.+.+.+...+........+++
T Consensus 115 --~-i~~s~~~l~l~r~l~G~G~~~~-~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~ 189 (591)
T PTZ00207 115 --V-IEGSVVRLSVYNGLMTLGCMLF-DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFF 189 (591)
T ss_pred --c-ccCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0 0123333344444444443322 2223344567887 788999999999999999876666665554322334455
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 040949 447 FAGWILVMGLFALFLLPET 465 (490)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~ 465 (490)
.+.+..+.+++...++++.
T Consensus 190 l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 190 LMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHhheeCC
Confidence 5555555555555555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.8e-09 Score=97.10 Aligned_cols=160 Identities=9% Similarity=0.042 Sum_probs=123.2
Q ss_pred hhhHHHhHHHHHHHcCCCCch-hHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 289 INAIMFYAPVLFQTVGFKNDA-SLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
-....+..|.+.+++|++..+ .+.+......+..+..+.+|+++||+|.|+.+..+.+...+..++.++.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--------- 112 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--------- 112 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 355666678888889999999 9999999999999999999999999999999998888888877777652
Q ss_pred CcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH---HH
Q 040949 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY---IF 444 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 444 (490)
.+.....+.-++++.+-+..+ ....++.+.+|+++|+++.|+.+....+|.++++++.+. ....++. ..
T Consensus 113 -----~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~L 184 (511)
T TIGR00806 113 -----TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTL 184 (511)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHH
Confidence 234445555566666555444 556677899999999999999999999999999999999 4455533 33
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q 040949 445 FFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~ 465 (490)
..+.......+++..+++|..
T Consensus 185 n~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 185 NIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 334444555556666677743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-07 Score=85.81 Aligned_cols=344 Identities=11% Similarity=0.051 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh--------h----hHHH---HHHHHHHhhhh
Q 040949 73 LQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA--------L----NIWM---LIIGRILLGIG 137 (490)
Q Consensus 73 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~----~~~~---l~~~r~l~G~~ 137 (490)
.+...-.-.+...+.++..|.+.||..|.+++..+.+..-++-.+.+.. + +-+. +++.-.+.|.-
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 119 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI 119 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence 3555555566777888999999999999998877766654433332211 1 1111 22222222221
Q ss_pred hhh-hhhhHHHHhhhcC------CCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhh
Q 040949 138 VGF-GNEAVPLFLSEIA------PVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSI 210 (490)
Q Consensus 138 ~~~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 210 (490)
.-. ......+.=.||. +++++.+.++.+.-.--+.-+++|++ .+...+..+.+....+.+...++..++-+
T Consensus 120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~--vG~l~t~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLF--VGLLMTFASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122222234553 34456677777777778889999998 55555556788887777777776654422
Q ss_pred -cc----cCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHH
Q 040949 211 -VI----TETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQ 285 (490)
Q Consensus 211 -~~----~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (490)
++ ...|. +..+++.++.++.-+.. ...+.+.+....+...+.-++....|+..++.+-..+ .+...+.+
T Consensus 198 ~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla----s~alalLY 271 (432)
T PF06963_consen 198 FLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA----SFALALLY 271 (432)
T ss_pred HHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH----HHHHHHHH
Confidence 22 22232 22222221111100000 0000000111111111112223455666666533222 22222222
Q ss_pred hhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcc
Q 040949 286 FTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (490)
+. ...+......|+...|+++...+..-....+.++.++++..++.+|+|..+.-.++......+..+.........
T Consensus 272 ~T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~-- 348 (432)
T PF06963_consen 272 FT-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPG-- 348 (432)
T ss_pred HH-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 21 223344556677888999999999999999999999999999999999888777776666555444433222100
Q ss_pred ccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 040949 366 TSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQ 430 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 430 (490)
...+..+....+..+++--.|.- ++--....+++|.+|+++||+..|.-+...++...+.-.
T Consensus 349 --~~~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 349 --SPFSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 00001112222222222222221 222233455689999999999999998888877655433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=110.49 Aligned_cols=162 Identities=10% Similarity=-0.071 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHH
Q 040949 276 IGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTI 355 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 355 (490)
....+..+.+..........++.+-++++++..+.|++.+...++..++.++.+++.||.+||+.+..+.++++++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33333444444444555556677777889999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHhhc-ccc--------------------------------Ccccch--h-hH-HHHHHHHHHHHHhhcccccccc
Q 040949 356 GGMLLVHLK-ATS--------------------------------NTLTTT--Q-AG-FVVFLVCLFVMAFAWSWGPLGW 398 (490)
Q Consensus 356 ~~~~~~~~~-~~~--------------------------------~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~ 398 (490)
++....... ... ...... + .+ ..++.-++.+.+. ....++..
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~-~~~~~~~~ 194 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA-TPIFPLGI 194 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC-CcchhcCc
Confidence 654321100 000 000000 1 12 2223333333332 24456777
Q ss_pred ccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040949 399 LIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 399 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
+++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-09 Score=100.87 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=117.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
+.+..+.|.+.+...+...++.++.|++.||+|||+.+.++..+.+++..+...+++.+.+++.+++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999888878888999999999999999877777777
Q ss_pred HHhhhcCCCCccchHHhH-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH
Q 040949 147 LFLSEIAPVQHRGAVNIL-FQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG 208 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 208 (490)
.+..+..+++.++...+. .+....+|..+++.+ .+...+..||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l--~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL--AGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh--HHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 788888888888776665 678889999999999 445555569999999988877665443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-09 Score=100.22 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=98.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhhhhhhhhhhHHH
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA-LNIWMLIIGRILLGIGVGFGNEAVPL 147 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 147 (490)
+..+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.+...+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888899999999999999999999999999998888888777665 46677788889999999999999999
Q ss_pred HhhhcCC-------CCccchHHhHHHHHHHHHHHHHHHHHHHh
Q 040949 148 FLSEIAP-------VQHRGAVNILFQLFVTIGIFLANLVNYGT 183 (490)
Q Consensus 148 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 183 (490)
+++|..+ ++++|.+.++.+....+|..+++.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998875 45678999999999999999999885444
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-10 Score=106.98 Aligned_cols=184 Identities=12% Similarity=0.028 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
.....+.+....+..--+.+..-.+..-+.+|.+.+..|++.....+...+..+++|++.||++|++++..+..+..++.
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 44455555555555555566555566666679999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
++.++. ...|...++-.+.+.+-. ++.|+...+++|.+|...|+++.++.+....+|..+|-...
T Consensus 113 ~~~~fs--------------~~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvg 177 (493)
T KOG1330|consen 113 FASGFS--------------NHFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVG 177 (493)
T ss_pred HHHHHH--------------HHHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEee
Confidence 777653 344555555555555543 56788888999999999999999999999999988887777
Q ss_pred HHHHHhhh-hH-HHHHHHHHHHHHHHHHHhhcccCCCCChH
Q 040949 433 LSMMCHMR-AY-IFFFFAGWILVMGLFALFLLPETKGVPID 471 (490)
Q Consensus 433 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (490)
..+.+..+ |. .+...+++.++++++..++.+|.+++..+
T Consensus 178 s~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 178 SVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred eeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 77776666 33 45555666667777777777776654333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-08 Score=97.23 Aligned_cols=149 Identities=8% Similarity=-0.061 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHH
Q 040949 276 IGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTI 355 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 355 (490)
....+.++.............|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+.+..+..+.+++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~ 108 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33344444444556777788899888889999999999999999999999999999999999999999999888887665
Q ss_pred HHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 040949 356 GGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSM 435 (490)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (490)
.... ..++.+..+....+.+.+.+.. .+....++.|..|++.|....++.+....+|..+++.+.+.+
T Consensus 109 ~~~~-----------~a~~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 109 WPAA-----------EIMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHH-----------hcCCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 1234444455555555555543 333345556777767666678899999999999998887654
Q ss_pred H
Q 040949 436 M 436 (490)
Q Consensus 436 ~ 436 (490)
.
T Consensus 177 ~ 177 (438)
T PRK10133 177 I 177 (438)
T ss_pred H
Confidence 4
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=98.21 Aligned_cols=178 Identities=11% Similarity=-0.043 Sum_probs=104.9
Q ss_pred HHHHHHhhchhhHHHhHHHHHHHcC---CCCchh---HHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHH
Q 040949 280 LQVFQQFTGINAIMFYAPVLFQTVG---FKNDAS---LLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQS 353 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 353 (490)
+..+....-...+....|.+.++.+ .+..+. +..+....++..++.++.|+++||+|||+.+..+....+++.+
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3344444445556666677767763 333332 2333444555568999999999999999999999888888877
Q ss_pred HHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 040949 354 TIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (490)
+.++....... ........+++-.+.+.+.+ ...+....++.|.+|+++|+.+.++.+.....|..+++.+..
T Consensus 109 ~~~~~~~~~~~------~~~~~~~l~~~R~l~G~g~g-~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 109 VIACLPGYETI------GTWAPALLLLARLFQGLSVG-GEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred HHhhcCCchhH------HHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76542100000 00011223334444444433 334566778899999999999998887777677666665544
Q ss_pred HHH--------HhhhhHHHHHHHHHHHHHHHHHHhhccc
Q 040949 434 SMM--------CHMRAYIFFFFAGWILVMGLFALFLLPE 464 (490)
Q Consensus 434 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (490)
.+. +..+|...+...++..+.........||
T Consensus 182 ~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e 220 (432)
T PRK10406 182 VLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDE 220 (432)
T ss_pred HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 332 1346665555544444433333333344
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=98.40 Aligned_cols=163 Identities=15% Similarity=-0.009 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHH-HHHH-----hHHHHHHHHhhhhhhcccCchHHHHHhhH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLS-SVIT-----GTVNVLSTLVSIYAVDKVGRRKLLLQACV 346 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 346 (490)
+......+..+....-...+....|.+.++++.++.+.+.. .+.. .+...++.++.|++.||+|||+.+..+..
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 34555566666666667778888899989888877664332 2211 22224678889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccchh------hHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHH
Q 040949 347 QMFISQSTIGGMLLVHLKATSNTLTTTQ------AGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSS 420 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 420 (490)
+..++..+..+.. ... ....++.-.+.+.+.+.. .+....++.|.+|+++|+++.++.+..
T Consensus 95 ~~~~~~~l~~~~~------------~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e~~p~~~rg~~~~~~~~~ 161 (434)
T PRK15075 95 IMASGTLLIAFVP------------GYATIGLAAPLLVLLGRLLQGFSAGVE-LGGVSVYLAEIATPGRKGFYTSWQSAS 161 (434)
T ss_pred HHHHHHHHHHhCC------------cHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHhhCCcccchHHHHHHHHH
Confidence 8887777666421 101 011223333333333322 333456788999999999999999888
Q ss_pred HHHHHHHHHHHhHHHH--------HhhhhHHHHHHH
Q 040949 421 NMFFTFLIAQAFLSMM--------CHMRAYIFFFFA 448 (490)
Q Consensus 421 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 448 (490)
..++..+++.+.+.+. +..+|...+.+.
T Consensus 162 ~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 162 QQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 8888777777666553 344555444443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=110.61 Aligned_cols=190 Identities=15% Similarity=0.080 Sum_probs=117.4
Q ss_pred HhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCC-CchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHH
Q 040949 264 ELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFK-NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLL 341 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 341 (490)
++++++.+++.++..++..+........+..+..+.+.. .+.+ ....++..+...+..++..++.|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 345555555555555555544332223333332222221 1221 13456667777888899999999999999999976
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHH
Q 040949 342 LQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSN 421 (490)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 421 (490)
.....+..+......... ...+.+..+++.++.+.+.+ ...|...+++.+.+|++.++.++|+.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~-----------~~~s~~~l~~~~~l~gi~~a-~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~ 153 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGF-----------HLNSVPLLFAALFLMGIHSA-LFGPIKYSILPDHLNKDELLGANALVEAGT 153 (1140)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHHHHHHHHHH-hhchHHHHhhHhhcCccccchhhHHHHHHH
Confidence 442222222211111111 11244445555555554443 446777888899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 422 MFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
.++..++|.+.|.+.+..++...++..++..+.++++.+.++++
T Consensus 154 ~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 154 FIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999998887666555555555555555556554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=86.04 Aligned_cols=134 Identities=17% Similarity=0.141 Sum_probs=92.5
Q ss_pred HHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccc
Q 040949 316 ITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGP 395 (490)
Q Consensus 316 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (490)
...++.+++.+..+++.||++||+.+..+.....++.+..... .+.+.......+.+.+.+ ...+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~-~~~~ 70 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--------------SNITVLIIARFLQGFGAA-FALV 70 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHHHH-HHHH
Confidence 4457778889999999999999999888777766665554331 223333334444444433 2345
Q ss_pred cccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHH-HHHHHHHHHHHHHHHHhhccc
Q 040949 396 LGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYI-FFFFAGWILVMGLFALFLLPE 464 (490)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (490)
....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++.. +.+......+..+......||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 556677899999999999999999999999999999999988777644 334444444444444444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=96.96 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=104.9
Q ss_pred hHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhccc-----CchHHH-HHhhHHHHHHHHHHHHHHHHhhc
Q 040949 291 AIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKV-----GRRKLL-LQACVQMFISQSTIGGMLLVHLK 364 (490)
Q Consensus 291 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~ 364 (490)
......|.+.++.|+|.++.+..... .+...+ .++.|+++||+ ||||.+ ..+....++....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 44556788899999999999988644 444443 78999999997 788875 445555544444443210
Q ss_pred cccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh----
Q 040949 365 ATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR---- 440 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 440 (490)
+..+.+.......+.. .......+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 ------~~~~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 79 ------PSTDLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred ------cchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 1122222222222222 22223345556778899999999999999999999999999999998888777
Q ss_pred ----hHHHHHHHHHHHHHHHHHHh-hcccC
Q 040949 441 ----AYIFFFFAGWILVMGLFALF-LLPET 465 (490)
Q Consensus 441 ----~~~~~~~~~~~~~~~~~~~~-~~~~~ 465 (490)
+...+...++..+...+..+ ..+|+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 66555555555554444433 34554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=97.71 Aligned_cols=139 Identities=12% Similarity=0.001 Sum_probs=106.3
Q ss_pred CCCchHHHHHHHHHHH-HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhhhhhh
Q 040949 67 KYDNQILQLFTSSLYL-AALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSG------ALNIWMLIIGRILLGIGVG 139 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~ 139 (490)
|++.+++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 7899999999888764 66777899999999999999998877766443332221 1233445555667777788
Q ss_pred hhhhhHHHHhhhcCCC-CccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH
Q 040949 140 FGNEAVPLFLSEIAPV-QHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI 207 (490)
Q Consensus 140 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 207 (490)
...+...+.+.+..++ +++++.++..+...++|..++|.+++ ...+..|++..|++.+++.++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G--~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAG--YLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccHHHHHHHHHHHHHHHH
Confidence 8888888888777776 78999999999999999999999954 444556899999888776665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.7e-09 Score=95.27 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=130.6
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+++|++..++..+.-...+..+++++++|+|.||+|.|+++..+.++..+.++..-+...-..+.++-.+.|...|+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 44789999999999999999999999999999999999999999999999999888888777778888899999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCc
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITET 215 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 215 (490)
..+-++..+..|+++-++.+|+++...-.+..+||.+-....... .+-|..+....++..+.++..+.+|+.
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT-g~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT-GSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999999999854443333 356777776666655556666666654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=112.72 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=117.7
Q ss_pred cCCCch-HHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 66 CKYDNQ-ILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 66 ~~~s~~-~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
+|++.. +.|++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+.
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 367788 8999999999999999999999999999999999999999888888888889999999999999999999999
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHH
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIF 204 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 204 (490)
..+++.+..|+++|++++++.+....+|.++++.++..... ...++...+++.+.+.++
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777543322 234566667665554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=97.08 Aligned_cols=134 Identities=10% Similarity=0.027 Sum_probs=99.1
Q ss_pred hhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCc
Q 040949 290 NAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNT 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
......+|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.. .
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~------------ 83 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S------------ 83 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H------------
Confidence 445567888999999999999999999999999999999999999999999888776665554433 1
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 040949 370 LTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR 440 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (490)
. ++.+..+....+.+.+.+.. .+.....+.|.+| ++|+++.+..+....+|..+++.+.+.+.+..+
T Consensus 84 -~-~~~~~l~~~~~~~g~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 84 -A-PGTALLFAGTALIGVGIAII-NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred -h-ccHHHHHHHHHHHHHHHHHH-hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 22333333344444443332 2233445567776 689999999999999999999999888877653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-08 Score=94.06 Aligned_cols=177 Identities=13% Similarity=0.011 Sum_probs=108.3
Q ss_pred chhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhc----ccCchHHHHHh-hHHHHHHHHHHHHHHHHh
Q 040949 288 GINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVD----KVGRRKLLLQA-CVQMFISQSTIGGMLLVH 362 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~-~~~~~~~~~~~~~~~~~~ 362 (490)
.+.....+.+.++++.|.+....+.......+.+++..++.|+++| |+|||+.++.. .....++..++.......
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 4556666777788999999999999999999999999999999999 59999998765 333334334333211000
Q ss_pred hccccCcccch-hh---HHHHHHHHHHHHHhhccccccccccccccCCccch--hhHHHHHHHHHHHHHHHHHHHhHHH-
Q 040949 363 LKATSNTLTTT-QA---GFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETR--TAGFAFAVSSNMFFTFLIAQAFLSM- 435 (490)
Q Consensus 363 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 435 (490)
... ....... .. +..+....+........ .+...+++.|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~-~~~~~~~~~~~~i~~~~i~~~lld~~~n~~-~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 99 HLF-GDNLDKKTKPRAIIVFVVGFWILDVANNML-QGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhc-cccccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0000000 11 12222222333333333 23346778999998865 5789999999999999998887764
Q ss_pred -HHhh-------------hhH-HHHHHHHHHHHHHHHHHhhcccCC
Q 040949 436 -MCHM-------------RAY-IFFFFAGWILVMGLFALFLLPETK 466 (490)
Q Consensus 436 -~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 466 (490)
.+.. +.. .+.+.++++.+..++..+..+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 2211 112 333434444444555556667754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-08 Score=90.51 Aligned_cols=131 Identities=10% Similarity=-0.002 Sum_probs=104.1
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
.+|+++++.+...+.+..+..++.++.+++.||+|+|+.+.++..+..++.++....++... ..+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999888888887766665554332 33556889999999999
Q ss_pred HHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHH
Q 040949 145 VPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGV 200 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~ 200 (490)
..+...+..|++ .+.+.++. ....+|..+.|.+ .+...+..|.+..|++..+
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l--~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLL--QGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHH--HHHHHHhccchHHHHHHHH
Confidence 999999988754 45666775 5666899999987 4455555678888875443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.4e-08 Score=94.24 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=95.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL--NIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+...+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~ 338 (448)
T PRK09848 259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT 338 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555677888999999999999999999999999888887777653 677777788899999999999
Q ss_pred hHHHHhhhcCCCC-------ccchHHhHHHHHHHHHHHHHHHHHHH
Q 040949 144 AVPLFLSEIAPVQ-------HRGAVNILFQLFVTIGIFLANLVNYG 182 (490)
Q Consensus 144 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~~~~~ 182 (490)
...++..|..|.+ ++|...+..+....+|..+|+.+...
T Consensus 339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754 35888999999999999999887543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-09 Score=93.83 Aligned_cols=144 Identities=14% Similarity=-0.007 Sum_probs=102.4
Q ss_pred CCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHH
Q 040949 306 KNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLF 385 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (490)
+...+|++-+.+++..++.++..|.++||+|||..+..+....++..++.+. +.....++..=+.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~---------------S~~F~afv~aR~l 130 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL---------------SRNFAAFVLARFL 130 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHh
Confidence 4456788888999999999999999999999999999998888887666654 2223222221222
Q ss_pred HHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH---hhhhHHHHH---HHHHHHHH-HHHH
Q 040949 386 VMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC---HMRAYIFFF---FAGWILVM-GLFA 458 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~-~~~~ 458 (490)
++. .-+...+..++++|++++++|+.+++..++...+|.++||.+.|++.+ ..+.+.+.. +..+.... ....
T Consensus 131 ~Gi-~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~ 209 (451)
T KOG2615|consen 131 GGI-FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFF 209 (451)
T ss_pred hhh-ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 222 223344667888999999999999999999999999999999999987 344332222 22222222 3345
Q ss_pred HhhcccC
Q 040949 459 LFLLPET 465 (490)
Q Consensus 459 ~~~~~~~ 465 (490)
.+++|||
T Consensus 210 ~~~lpET 216 (451)
T KOG2615|consen 210 PWFLPET 216 (451)
T ss_pred HHhCCcc
Confidence 5677886
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=90.78 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=110.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh---hHH------HHHHHHHHhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL---NIW------MLIIGRILLGIG 137 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~l~~~r~l~G~~ 137 (490)
|++..+..+..........+..+++..+.||+|||+.++.+..++.+..+++.... +.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999888877642 111 223444444333
Q ss_pred hhh-hhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH-HhhcccCc
Q 040949 138 VGF-GNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI-GSIVITET 215 (490)
Q Consensus 138 ~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es 215 (490)
.+. .-|...-+.+|.+|++.|..++++.....-+...+-... .....+..|= ..|++..+++.+..+ .+..+|||
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~--fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA--FPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 332 357778889999999999999999888888877766555 3333333343 667777777766654 45569998
Q ss_pred h
Q 040949 216 P 216 (490)
Q Consensus 216 p 216 (490)
.
T Consensus 458 k 458 (485)
T KOG0569|consen 458 K 458 (485)
T ss_pred C
Confidence 5
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-07 Score=93.38 Aligned_cols=144 Identities=13% Similarity=0.207 Sum_probs=115.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhh-hhcchhHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCT-KFGRKPTILVASSFFLAGAGISSGALN--------IWMLIIGRILLGI 136 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~ 136 (490)
+|++.+....+...+....-+..+++|.++| ++||++.+.++.++..++.++.+++.. ....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 4778888999999999999999999999999 599999999999999999988876421 2346677888899
Q ss_pred hhhhhhhhHHHHhhhcCCCCc---cchHHhHHHHHHHHHHHHHHHHHHHhcc-c----CCCchHHHHHhhHHHHHHHHHH
Q 040949 137 GVGFGNEAVPLFLSEIAPVQH---RGAVNILFQLFVTIGIFLANLVNYGTAK-L----HPHGWRVSLALAGVPAIFLFIG 208 (490)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~~~~~~~~-~----~~~~wr~~f~~~~~~~~~~~~~ 208 (490)
|.|+.-|+..+...|.+++++ |...+.++..+.++|..+++.+...... . ...+|...|.+.++..++.++.
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999997543 6678888999999999999877433321 1 2347999999988877776544
Q ss_pred h
Q 040949 209 S 209 (490)
Q Consensus 209 ~ 209 (490)
.
T Consensus 178 f 178 (654)
T TIGR00926 178 F 178 (654)
T ss_pred H
Confidence 3
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=93.33 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=122.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 040949 68 YDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPL 147 (490)
Q Consensus 68 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 147 (490)
.++...|.+.+..-+.=++...+..++.+|+|.|+.++++..++++=.++++++++.+.+.+.+.+.|+-.+........
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCccchHHhH-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc-ccCc
Q 040949 148 FLSEIAPVQHRGAVNIL-FQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV-ITET 215 (490)
Q Consensus 148 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~es 215 (490)
|+++.+|+|-.++...+ .+...++|..+.+.+ .+...++.|.+..|++.+.+.++..++..+ ++++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~--~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPL--AGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh--HHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999998877766666 468888999988888 556667789999999998887776555444 5443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-08 Score=85.44 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=115.2
Q ss_pred HHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhh
Q 040949 284 QQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHL 363 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (490)
...+..+.+..|.|.+.++.|+|.++...+.....++..+| ++.|.+.|+.|.+..+.++.....++...+......
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~-- 89 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG-- 89 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 44456788899999999999999999999888888888765 778999999999999999999999998877664321
Q ss_pred ccccCcccchhhHHHHHHHHHHHHHhhccc-cccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 364 KATSNTLTTTQAGFVVFLVCLFVMAFAWSW-GPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
..+....|.. ++.....+.+.++ .........+.+| ++||++.|+.-....+++.+...+...+.+.....
T Consensus 90 -----~i~~~~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~ 161 (250)
T PF06813_consen 90 -----RIPSLPVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS 161 (250)
T ss_pred -----ccCccchHHH--HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHH
Confidence 1011222222 2222233333332 2222233457888 58999999999999999998888887777654333
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 040949 443 IFFFFAGWILVMGLFALFLLPE 464 (490)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (490)
.....+....+.+++...+++.
T Consensus 162 fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 162 FLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHHHHHhhheec
Confidence 3333444444444444444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-05 Score=74.59 Aligned_cols=258 Identities=14% Similarity=0.107 Sum_probs=145.4
Q ss_pred CchHHHHHHHHHHHHHHHH-HhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh----h---------------------
Q 040949 69 DNQILQLFTSSLYLAALFA-SFVASKVCTKFGRKPTILVASSFFLAGAGISSGA----L--------------------- 122 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~-~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~--------------------- 122 (490)
+.+.+.++-+...+...+. .++.+++++|++|++++-.....+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467899999888887766 8999999999999999988777777766666654 1
Q ss_pred ------hHHHHHHHHHHhhhhhhhhhh-hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc------cCCC
Q 040949 123 ------NIWMLIIGRILLGIGVGFGNE-AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK------LHPH 189 (490)
Q Consensus 123 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~------~~~~ 189 (490)
+.|...+.-+...+-...... .-..++.|.++.+|-.|..+++..+.++|.++++.+...... ....
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~ 200 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVD 200 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 123333444445554444454 667889999999999999999999999999999987544331 1112
Q ss_pred chH----HHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHh
Q 040949 190 GWR----VSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKEL 265 (490)
Q Consensus 190 ~wr----~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (490)
.|. ..+.+.++..++.....+++.+.. ..+.+. .+.+ +++++++.+.+..+-
T Consensus 201 ~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~---------------~~~~------~~~~k~k~k~~~~es 256 (472)
T TIGR00769 201 GWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRS---------------YNPA------LKEKKVKPKMSTMES 256 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccc---------------cchh------hccccCCCCCCHHHH
Confidence 452 233333333333333333321110 000000 0000 011111223344444
Q ss_pred cccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCch----hHHHHHHHhHHHHHHHHhhhhhhcccCchHHH
Q 040949 266 MKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDA----SLLSSVITGTVNVLSTLVSIYAVDKVGRRKLL 341 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 341 (490)
++...+.|.+..+.+...++......+..--....++..-++.+ .+......++..++.+++.+++.+|+|-+...
T Consensus 257 ~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a 336 (472)
T TIGR00769 257 LKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAA 336 (472)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 43333335555555555544333333332222233333233322 23344555666666677778999999877665
Q ss_pred HHhhHHHHH
Q 040949 342 LQACVQMFI 350 (490)
Q Consensus 342 ~~~~~~~~~ 350 (490)
...-+...+
T Consensus 337 ~i~Pii~li 345 (472)
T TIGR00769 337 LITPLVMLL 345 (472)
T ss_pred HHHHHHHHH
Confidence 554444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=88.29 Aligned_cols=340 Identities=10% Similarity=0.026 Sum_probs=206.0
Q ss_pred CCCchHHH-HHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 67 KYDNQILQ-LFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 67 ~~s~~~~g-~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
|++..++. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.|...+ ...+-
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAY 115 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAY 115 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhh
Confidence 44444433 23333444556666677788999999999998888888888888999999999999999999876 66778
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCCh
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNE 225 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~ 225 (490)
++++-+..+++++.++.+.-.+..-.|...|..++-.....+..+....-.+......+.....+++|..+|...-+++.
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~ 195 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLE 195 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccc
Confidence 89999999999999999999999999998888887666666666666666666555555666777888877655544433
Q ss_pred HHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCC
Q 040949 226 VAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGF 305 (490)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 305 (490)
++. ...+..+.++ +.+..+ ........-...+.+..++ +.+....+.+.....+++....|...+-++..-
T Consensus 196 ~~~--~v~~~e~~~~-~~~~~~--~l~~~~~~l~~~l~~~y~n----p~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~ 266 (433)
T KOG3810|consen 196 DKI--SVGDLEEMNP-QASYMS--YLRGAFVLLWRDLQECYSN----PRLLKWSLWWALASCGYYQVTNYTQILWKEVAP 266 (433)
T ss_pred ccc--eeccchhcCc-cchhhH--HHHHHHHHHHHHHHHHhcC----chhhhhHHHHHHhhchhHHHHHHHHHHHHhhCC
Confidence 311 1111111111 000000 0000111111223333333 334444455555556677788887777776631
Q ss_pred C--CchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHH
Q 040949 306 K--NDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVC 383 (490)
Q Consensus 306 ~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (490)
. ....|..=++..+.++++.+..|.+--+..|..-+..+......+.+++.. . ...+.|+..+...
T Consensus 267 ~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m--~----------~t~~Iw~~Ya~yv 334 (433)
T KOG3810|consen 267 NPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM--A----------QTQHIWVCYAGYV 334 (433)
T ss_pred CchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh--h----------cccceehhhhhHH
Confidence 1 122344555666777788888888876666653333332222222222211 1 3455666667777
Q ss_pred HHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHH
Q 040949 384 LFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIA 429 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 429 (490)
++...+.... ++....+++....+.-|...|+...+.-+-..+..
T Consensus 335 lfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT 379 (433)
T KOG3810|consen 335 LFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILT 379 (433)
T ss_pred HHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence 7766666543 33333345555666778888877666555444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=95.75 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=130.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhc--chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFG--RKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
.+.++.+.+.+.++..+...++.+..|+++|+.. ++.+..++++..+++...+++.++++.++..-.+.|+..|....
T Consensus 328 ~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~ 407 (509)
T KOG2504|consen 328 LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSS 407 (509)
T ss_pred cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988 45667788888899999999999999999999999999999988
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCC-chHHHHHhhHHHHHHHHHHhhccc
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPH-GWRVSLALAGVPAIFLFIGSIVIT 213 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~ 213 (490)
.....+.|..+.++-..+.|+.....+++.++||++++ ...+.. +|...|+..++..++....++..|
T Consensus 408 l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag--~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 408 LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG--LLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce--eeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 88889999999999999999999999999999999954 554544 499999999998888776666665
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-08 Score=90.09 Aligned_cols=139 Identities=11% Similarity=0.004 Sum_probs=104.1
Q ss_pred hhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCc
Q 040949 290 NAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNT 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
....+++=..+++.+-.+.-.|......-.+.++.-++.+++.+|+|+-+++..++.+..+=++.+..+
T Consensus 388 ~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----------- 456 (618)
T KOG3762|consen 388 GLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----------- 456 (618)
T ss_pred HHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----------
Confidence 344444444668887777777877777778888888999999999999999988888887777766643
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHH-HHHHHHHHHHHhHHHHHhhhhHH
Q 040949 370 LTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSS-NMFFTFLIAQAFLSMMCHMRAYI 443 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 443 (490)
.+.|..+..-.+-+......|..+ .+++....||+.+.++.++.... ..+|-.+|+.+.|.+.+..+...
T Consensus 457 ---~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~t 527 (618)
T KOG3762|consen 457 ---QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGART 527 (618)
T ss_pred ---cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHH
Confidence 355555555566666666555544 46778999999999999988765 45777788888898888877543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=92.25 Aligned_cols=180 Identities=12% Similarity=0.135 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cC----CCCchhHHHHHHHhHHHHHHHHhhhhhhcc-cCchHHHHHhhH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VG----FKNDASLLSSVITGTVNVLSTLVSIYAVDK-VGRRKLLLQACV 346 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~ 346 (490)
+.++.++..-+..-++++++...+..|+.. .+ ++.+++.-.+..+....-+..+++||++|| +|+|+.+..+.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 446666666777777788888888777754 36 888888888877777777888899999999 599999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccc--hhhHHHHHHHHHHHH
Q 040949 347 QMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLET--RTAGFAFAVSSNMFF 424 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~ 424 (490)
+++++.+++.... ........+.+.++..+.+. .=+....++.|++|++. |..+.++.....++|
T Consensus 101 l~~iGh~~L~~~~------------~~~~~gl~i~L~~I~iG~Gl-~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 101 LMAIGHLVLAISS------------VSGPGGLYIGLALIIVGTGL-FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred HHHHHHHHHhccc------------cccccHHHHHHHHHHhcccc-ccccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 9999998887621 02333444555555555443 34455667789888653 667788888888999
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 425 TFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
+.++|.+.+++.++.++...+..+++....+++.+...+++
T Consensus 168 sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 99999999999999998877777877887777777766543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.8e-07 Score=83.52 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcC
Q 040949 74 QLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIA 153 (490)
Q Consensus 74 g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 153 (490)
+.+.-+..+...+.-+.+.+..+|...+.=+.....++.++.++.+++++.+.-+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555566667777777888899988766667777788899999999999999999999999999988887777644 55
Q ss_pred CCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc-ccC
Q 040949 154 PVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV-ITE 214 (490)
Q Consensus 154 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 214 (490)
++ ...+-+.+|.+.+.++|+..-.+... ...+-|..+++...+.++..+..++ +|+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 35788888888888888876322222 2345577887777666555444444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.3e-08 Score=93.96 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=92.1
Q ss_pred HHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccc
Q 040949 293 MFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTT 372 (490)
Q Consensus 293 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (490)
...++.+.++.|-++ ...++.....++..++.++.|+++|.+|||..++.+.++..++.+..+- .
T Consensus 64 a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at--------------A 128 (599)
T PF06609_consen 64 ASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT--------------A 128 (599)
T ss_pred HHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc--------------C
Confidence 344566667777664 4456667778888999999999999999999999999988888877763 3
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhH
Q 040949 373 TQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAY 442 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (490)
++....+....+.+.+.+. ..+....++|..|.+.|..+.++.....-.....++.+...+..+.+|.
T Consensus 129 ~~~~~~iag~~l~GvgaG~--~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGV--QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred CcHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 4555566666666665433 2344455789999999988777665544444445566655554444444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=87.68 Aligned_cols=134 Identities=26% Similarity=0.380 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhhhhhhhhhhhHHHH
Q 040949 71 QILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALN--IWMLIIGRILLGIGVGFGNEAVPLF 148 (490)
Q Consensus 71 ~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (490)
.+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.++.++..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776666777777766 8999999999999999999999999
Q ss_pred hhhcCCC-CccchHHhHHHH-HHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHH
Q 040949 149 LSEIAPV-QHRGAVNILFQL-FVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIF 204 (490)
Q Consensus 149 i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 204 (490)
+.|+.|+ ++|+...+.... ...+|..+++.++.........+||..|.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999987 678988888888 5888888888664333322446899966666555433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=91.47 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=114.7
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHH
Q 040949 304 GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVC 383 (490)
Q Consensus 304 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (490)
+-+..+.|+++....+..++.+++.|.+.||+|+|..+..+...+..+.+++++. .+.+..++.-.
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--------------~sy~~l~vAR~ 167 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--------------NSYPMLFVARS 167 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--------------chhHHHHHHHH
Confidence 5567788999999999999999999999999999999999999999988888762 34445566666
Q ss_pred HHHHHhhccccccccccccccCCccc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHH-HHHHHHHHHHHhh
Q 040949 384 LFVMAFAWSWGPLGWLIPSETFPLET-RTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFA-GWILVMGLFALFL 461 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 461 (490)
+-+.+.... .....+++++.+|++. |++++|+.-.+..+|-.++|++.|.++|..|....+++. .++++-+.+-++.
T Consensus 168 LQgvgsA~~-~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFA-DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHH-HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 666665544 3345667789998776 799999999999999999999999999999966555554 4444444444444
Q ss_pred cccCC
Q 040949 462 LPETK 466 (490)
Q Consensus 462 ~~~~~ 466 (490)
++.++
T Consensus 247 i~p~~ 251 (464)
T KOG3764|consen 247 IEPTE 251 (464)
T ss_pred eCccc
Confidence 44333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=89.56 Aligned_cols=150 Identities=13% Similarity=0.009 Sum_probs=117.7
Q ss_pred HcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 302 TVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 302 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
+++++.++-+++++....+.+++.+..+++.||+|-|+++..+.++.+++.++..+... ...+.+++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~------------~~~~~~~~~ 134 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS------------IGFYLLLVL 134 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------------hcchhhHHH
Confidence 35788899999999999999999999999999999999999999999988888877542 233344555
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh-hhhH-HHHHHHHHHHHHHHHHH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH-MRAY-IFFFFAGWILVMGLFAL 459 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 459 (490)
-.+.+.+.+.. .|....+..+-.|+++|++..++..+...+|.+++-++.|.+.+. .||. .+++.+++..+..++.+
T Consensus 135 R~lqGl~~g~~-~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 135 RFLQGLGQGVL-FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHhHHHHhHH-HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 56666555544 455566778999999999999999999999999999999999998 7755 55555555555555544
Q ss_pred hhccc
Q 040949 460 FLLPE 464 (490)
Q Consensus 460 ~~~~~ 464 (490)
.+..+
T Consensus 214 ~~~~d 218 (466)
T KOG2532|consen 214 LFYSD 218 (466)
T ss_pred HHhcC
Confidence 54443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.4e-08 Score=86.01 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=100.3
Q ss_pred HHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccch
Q 040949 81 YLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGA 160 (490)
Q Consensus 81 ~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 160 (490)
.+.-..|.++.+++.||+|||+.|..+.+++++..++.....+-..+.+.-|..-+...+.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34556788899999999999999999999999999888776543333333333333445567778899999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCch
Q 040949 161 VNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETP 216 (490)
Q Consensus 161 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 216 (490)
..|.-+...-+|.++.|.++ .. ...+-..+..+.+...++..+...++|-.+
T Consensus 471 gvGtcSsmaRIggI~~p~iA--~~--~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA--MR--AELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH--HH--hccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999995 21 112344566677777777777777877544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-07 Score=89.11 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=90.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhhhhhhhhh
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSG-----ALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788777899999999999999999999999888877766655432 34567777788899999999999
Q ss_pred hHHHHhhhcCC-------CCccchHHhHHHHHHHHHHHHHHHHHHH
Q 040949 144 AVPLFLSEIAP-------VQHRGAVNILFQLFVTIGIFLANLVNYG 182 (490)
Q Consensus 144 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 182 (490)
...++++|..+ +++.|..++......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 2334558888888888888888877543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=80.10 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=103.3
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFF-LAGAGISSGALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (490)
++.||+|+...+.+.+.-..-.++.+++.|.++||+|++-..+.+..+. .++-.+..|+ ++.=..+..+.|++....
T Consensus 292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLL 369 (459)
T ss_pred HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHH
Confidence 4456999999999999999999999999999999999998777654443 3333333332 233334566778877766
Q ss_pred hhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCC-CchHHHHHhh-HHHHHHH
Q 040949 142 NEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHP-HGWRVSLALA-GVPAIFL 205 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~-~~wr~~f~~~-~~~~~~~ 205 (490)
-......++...|+++.|++.+..++..++|..+-|++++.....++ +.|--.|.+. +.+++..
T Consensus 370 AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 370 ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS 435 (459)
T ss_pred HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence 66566778888899999999999999999999999999655554443 4465555443 3344433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-06 Score=74.89 Aligned_cols=333 Identities=13% Similarity=-0.007 Sum_probs=168.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhh-----hhcchhHHHH-HHHHHHHHHHHHhh-----------hhhHHHHHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCT-----KFGRKPTILV-ASSFFLAGAGISSG-----------ALNIWMLII 129 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-----r~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~l~~ 129 (490)
|.|.+..+...-++ .. ..--+.|.++.| |+||||.-+. +..+.+..+...+. .++...+..
T Consensus 61 ~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~ 138 (510)
T KOG3574|consen 61 GVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTL 138 (510)
T ss_pred Ccchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHH
Confidence 55666665443222 12 223567899999 9999886332 33333333333322 234444444
Q ss_pred HHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccC-------CCchH---------H
Q 040949 130 GRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLH-------PHGWR---------V 193 (490)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~-------~~~wr---------~ 193 (490)
.-++.-+.++.-..+.-.+.-....+++-|.+......+.+.|..++..+ ...... ..+|. .
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i--fLaL~s~dF~N~y~rs~P~~~g~ItL~g 216 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV--FLALESPDFCNTYLRSIPLDQGFITLAG 216 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce--eeEecChhhhhHHHhcCcCccceEEhhH
Confidence 55666777777788888888888889999999999999999998888776 443322 12232 2
Q ss_pred HHHhhHHHHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCch
Q 040949 194 SLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPP 273 (490)
Q Consensus 194 ~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (490)
..++.+.+.++.-.+..+..+++. ++ +.+| .+..-++...-++++++-+..+.
T Consensus 217 y~~fwg~~~~vat~Lv~~~kke~~--------~~-------------~~~e------~~~~i~~~yk~l~~vLklk~v~~ 269 (510)
T KOG3574|consen 217 YLWFWGALFIVATTLVALLKKEND--------ES-------------VDEE------LELGIHESYKLLRDVLKLKSVRW 269 (510)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc--------hh-------------hhhh------hhcCHHHHHHHHHHHHcCccHHH
Confidence 233444444444444433333321 00 0000 00000111223445554433222
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccC------chHHHHHhhHH
Q 040949 274 LIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVG------RRKLLLQACVQ 347 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------~r~~~~~~~~~ 347 (490)
.... ....-.++.+-....+.-+.+.|++.++-++...+..-..++.....|++..... |+....+ .
T Consensus 270 la~i----~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~--~- 342 (510)
T KOG3574|consen 270 LAGI----LLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRL--G- 342 (510)
T ss_pred HHHH----HHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHH--H-
Confidence 2222 2222233455555667777889999888766554333334444444443333211 1111111 1
Q ss_pred HHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHH
Q 040949 348 MFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFL 427 (490)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 427 (490)
......++.+... ...+.+...+. ......+..-.+..++.........+..+++.+|...|+.+.+.|+..++|+-.
T Consensus 343 ~~~~~t~Lv~~~~-~~~~~~G~~~~-~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~w 420 (510)
T KOG3574|consen 343 GGLVQTALVWWTP-TLGHSDGTFPR-GYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNW 420 (510)
T ss_pred HHHHHHHHHhhhc-ccccCCCceee-chHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCc
Confidence 1111111111110 11111111111 111111111112222222222233456688999999999999999999999988
Q ss_pred HHHHhHHHHHhh
Q 040949 428 IAQAFLSMMCHM 439 (490)
Q Consensus 428 ~~~~~~~~~~~~ 439 (490)
-..+..++.|..
T Consensus 421 p~tv~l~l~D~l 432 (510)
T KOG3574|consen 421 PGTVALWLADGL 432 (510)
T ss_pred HHHHHHHhcccC
Confidence 888888887743
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-06 Score=78.16 Aligned_cols=139 Identities=9% Similarity=-0.032 Sum_probs=106.7
Q ss_pred chhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 288 GINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
.........|.+.+.++.+..+++++......+..++.+..+++.+|+|+|+-+..+..++++++.++.-..
T Consensus 28 ~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-------- 99 (422)
T COG0738 28 ITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-------- 99 (422)
T ss_pred HhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--------
Confidence 344555667888888899999999999999999999999999999999999999999999999988875321
Q ss_pred CcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040949 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
...+....+..+.+.+.+.+. .......++..+.|++....-+.+.+.++.+|..++|.+.+.+..+
T Consensus 100 ---~~~~y~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 100 ---SSKSYGFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred ---hhhhHHHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 112222333333333333332 2344566777888888888889999999999999999999998873
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.4e-07 Score=90.03 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=106.6
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLV 382 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (490)
...+.....+..++..++..+|.++.|.++||+|||+++..+..+..++.++.++ ..+.+...++-
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~--------------a~~~~~~~~~R 178 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF--------------APNYWMFLIFR 178 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH--------------hCcHHHHHHHH
Confidence 3556667778888999999999999999999999999999999999888866664 23455555555
Q ss_pred HHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 040949 383 CLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (490)
++.+.+.+ +...+...+..|.++++.|+.+..+ ......++..++...+++.. +|........+..+..++..++.
T Consensus 179 fl~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 179 FLSGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred HHHHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHcc
Confidence 55555544 4455667778999999999999999 88888889999999998887 44444444333333333334555
Q ss_pred ccC
Q 040949 463 PET 465 (490)
Q Consensus 463 ~~~ 465 (490)
+|.
T Consensus 255 ~Es 257 (521)
T KOG0255|consen 255 PES 257 (521)
T ss_pred CcC
Confidence 464
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=90.11 Aligned_cols=150 Identities=8% Similarity=-0.001 Sum_probs=117.0
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA----------LNIWMLIIGRILL 134 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~ 134 (490)
.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 468999999999999999999999999999999999999999999999887654311 3444566678899
Q ss_pred hhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccC-----CCchHHHHHhh-HHHHHHHHHH
Q 040949 135 GIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLH-----PHGWRVSLALA-GVPAIFLFIG 208 (490)
Q Consensus 135 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~-----~~~wr~~f~~~-~~~~~~~~~~ 208 (490)
+++.+........++.+..|+++++...++..+..++|..+++.++......- +++.++...+. .+..++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998754443221 13333433332 3333333444
Q ss_pred hhcccC
Q 040949 209 SIVITE 214 (490)
Q Consensus 209 ~~~~~e 214 (490)
..++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 557785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-06 Score=81.07 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=113.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh-hhHHHHHH----HHHHhhhhhhhhh
Q 040949 68 YDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA-LNIWMLII----GRILLGIGVGFGN 142 (490)
Q Consensus 68 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~ 142 (490)
.+....+.+.+...++=.+.-.+.+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...++|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 466677888888888888888999999999999999999999999988888887 55444333 3567999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHH-HHHHHHHHHHHHHHHhcccCC----CchHHHHHhhHHHHHHHHHHh-hcccC
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQL-FVTIGIFLANLVNYGTAKLHP----HGWRVSLALAGVPAIFLFIGS-IVITE 214 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~~~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~~-~~~~e 214 (490)
.....++.+..|++.|+++-+++.. ..++|..+|..+++....... ..|...+.+.+.+.++..++. .+.+|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999876 468999999999554433211 345566666666666654443 33444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=86.57 Aligned_cols=114 Identities=16% Similarity=0.247 Sum_probs=90.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhh----hhcchhHHHH-HHHHHHHHHHHHhhhhhH-----------------
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCT----KFGRKPTILV-ASSFFLAGAGISSGALNI----------------- 124 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~----------------- 124 (490)
|++....+.+--+-.+...+.+|+.|..+| ||||||.++. +....+++.++..++.++
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 677778888888888889999999999999 5999877665 566667777777776543
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccch-HHhHHHHHHHHHHHHHHHHH
Q 040949 125 WMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGA-VNILFQLFVTIGIFLANLVN 180 (490)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~~~ 180 (490)
..++++--+.-++.-.....+-+++.|...++++.+ +++.+....++|..+|..++
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 344455555566666788889999999998777666 99999999999999998884
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=87.25 Aligned_cols=140 Identities=19% Similarity=0.052 Sum_probs=105.7
Q ss_pred hHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHh
Q 040949 310 SLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAF 389 (490)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (490)
.+++.+...++..++.++.|+++|++|||+.+..+.+...++.++.... .+.....+.-.+.+.+.
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--------------~~~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--------------PSWYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHhccch
Confidence 3788999999999999999999999999999999999999998888762 35566666667777666
Q ss_pred hccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh--hhHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 390 AWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM--RAYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
+... .+...+.+|..|++.||...+..+....+|..++ .+.+...++. +|...+....+..+...+..++.||+
T Consensus 157 G~~~-~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 157 GGAS-VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hhhh-hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6543 4556778999999999999999998888766666 6666666543 55544444444444444446677765
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-07 Score=77.27 Aligned_cols=308 Identities=12% Similarity=0.108 Sum_probs=158.4
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
.++....++|.+.-+-+-..++...+.|-++|+-|||+.-+.-.+...+++ +.-.++.|-.++++|.+-|++.+..+.+
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 346777788888877777888889999999999999997655554444433 2345688999999999999999999888
Q ss_pred HHHH-hhhcCCCCccchHHhHHH--------HHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCc
Q 040949 145 VPLF-LSEIAPVQHRGAVNILFQ--------LFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITET 215 (490)
Q Consensus 145 ~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 215 (490)
..++ +.|... +|+.---+.. .+..+-.+++.+.+-.....-..|--.+|-..+....+...+.+
T Consensus 145 FEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil----- 217 (454)
T KOG4332|consen 145 FESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL----- 217 (454)
T ss_pred HHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH-----
Confidence 8775 566552 3332211111 22222233333332222222223444555443332222211111
Q ss_pred hhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 216 PTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 216 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
..|-..-++..+.++.+ .+.+...+.+..+ ++..+...+...+....+.....|
T Consensus 218 ~~W~ENygdps~~kdll-----------------------tqf~gaa~aiaSD---~ki~LLG~iqsLFE~smytFVFLW 271 (454)
T KOG4332|consen 218 SSWSENYGDPSENKDLL-----------------------TQFKGAARAIASD---EKIALLGAIQSLFEGSMYTFVFLW 271 (454)
T ss_pred hhhhhccCChhhhHHHH-----------------------HHhhHhHHHHhcc---hHHHHHHHHHHHHhhhhheeeeee
Confidence 01111111111111111 1111112222222 233333444444443344444455
Q ss_pred HHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCch--HHHHHhhHHHHHHHHHHHHHHHHhhccccCcccch
Q 040949 296 APVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRR--KLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTT 373 (490)
Q Consensus 296 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (490)
.|.+-.+- ...--|++++.+.++.++|+-+..++..|-..| ..+.+.+......+.+....... +. ...
T Consensus 272 TPaLspn~--e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~v-----sP--~ke 342 (454)
T KOG4332|consen 272 TPALSPND--EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSV-----SP--SKE 342 (454)
T ss_pred cccCCCCc--ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhcc-----CC--CcC
Confidence 55543111 112247788888888888888887776654332 23333333333332222221110 00 122
Q ss_pred hhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHH
Q 040949 374 QAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAF 416 (490)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 416 (490)
+...-++..+++-...+..+.++. -+-.+..|.+.|++.+-+
T Consensus 343 s~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 343 SPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNF 384 (454)
T ss_pred CchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhh
Confidence 333345666666677666655544 344678898888776544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.7e-06 Score=79.61 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Q 040949 72 ILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSG--ALNIWMLIIGRILLGIGVGFGNEAVPLFL 149 (490)
Q Consensus 72 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 149 (490)
..+.+.....++..++.+++++++||+|+|+.+..+.++.++......+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777888899999999999999999999888776654443332 35777788888999999999999999999
Q ss_pred hhcCCC-------CccchHHhHHHHHHHHHHHHHHHHHHH
Q 040949 150 SEIAPV-------QHRGAVNILFQLFVTIGIFLANLVNYG 182 (490)
Q Consensus 150 ~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~ 182 (490)
+|..+. ++.|...+.......+|..+|+.+++.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998852 234567788888888888888877544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=84.29 Aligned_cols=111 Identities=20% Similarity=0.268 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhhhhhhhhhHHHH
Q 040949 71 QILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL--NIWMLIIGRILLGIGVGFGNEAVPLF 148 (490)
Q Consensus 71 ~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (490)
...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhhcCCC-------CccchHHhHHHHHHHHHHHHHHHHHH
Q 040949 149 LSEIAPV-------QHRGAVNILFQLFVTIGIFLANLVNY 181 (490)
Q Consensus 149 i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~ 181 (490)
++|..+. ++.|...+......-+|..+++.+..
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999873 33578888888888888888887644
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-06 Score=65.90 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 040949 68 YDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPL 147 (490)
Q Consensus 68 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 147 (490)
+++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+...+-... -+-++.+.++.+-.+.|++.+..++..-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 34444445566677777888888999999999999999999998854433 35677889999999999999999999999
Q ss_pred HhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHh
Q 040949 148 FLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183 (490)
Q Consensus 148 ~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 183 (490)
++.+..++++|++..+++-.....+.++|.++....
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998875444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-05 Score=71.53 Aligned_cols=141 Identities=14% Similarity=0.111 Sum_probs=108.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
|+|..+.|++.+...+.....++....+++| -.+|+..+.....+.++...+.+.+.-..+.- -++.|+|.|..++.+
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~la 317 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLA 317 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHH
Confidence 8899999999999999999999999999995 55677778888888888888877764332222 489999999999999
Q ss_pred HHHhhhcCCC-CccchHHhHHHHHHHHHHHHHHHHHHHhcccC-CCchHHHHHhhHHHHHHHHHHhh
Q 040949 146 PLFLSEIAPV-QHRGAVNILFQLFVTIGIFLANLVNYGTAKLH-PHGWRVSLALAGVPAIFLFIGSI 210 (490)
Q Consensus 146 ~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~~ 210 (490)
.+++.+..++ ++-++..++.+....+=..+||.+. +...| ..+|+......+...++..+.-+
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~--G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLF--GFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhH--hHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9999988764 4445666666666666677788884 44333 36899998887777666554433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=80.88 Aligned_cols=184 Identities=13% Similarity=0.016 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHH--cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCc-hHHHHHhhHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQT--VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGR-RKLLLQACVQMF 349 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~~~~~ 349 (490)
+.++...+..+.....+.....-.-.|+++ .+-+.+..|+..+...++..++++..|+...|.++ |+.++.+.+++.
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~ 113 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAI 113 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHH
Confidence 444444444444433322222222235555 57777888999999999999999999999999886 888999999999
Q ss_pred HHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHH
Q 040949 350 ISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIA 429 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 429 (490)
++.++...+.+. +....++.+++-.+ .|.+.+.....-.++++..-.+.|.++.+..+....+|..+||
T Consensus 114 ~g~llY~~l~~~---------~~~~~y~mL~~R~l--~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 114 IGNLLYLALAYV---------PNGVKYLMLVARIL--TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP 182 (488)
T ss_pred HHHHHHHHHHhc---------ccchHHHHHHHHHH--cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence 998888554431 11133333333333 3334344455667777777778888888877776677777777
Q ss_pred HHhHHHHHhh------------h--hHHHHHHHHHHHHHHHHHHhhcccCCC
Q 040949 430 QAFLSMMCHM------------R--AYIFFFFAGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 430 ~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
.+...+.... + ....++.+.+.++..++...+.+|...
T Consensus 183 ~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 183 TIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 6654443211 1 124455555555555566666666543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=72.69 Aligned_cols=155 Identities=19% Similarity=0.130 Sum_probs=93.5
Q ss_pred HHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHH
Q 040949 299 LFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFV 378 (490)
Q Consensus 299 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
+.+++|++..+.+.++........+...+.|.++||+|||+..+..+++..++++.-- .++.+.+
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~---------------~~~~~~L 124 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH---------------SSNYPVL 124 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh---------------ccccHHH
Confidence 4467899999999999888888888889999999999999988888777777765432 2344444
Q ss_pred HHHHHHHHHHhhccccccccccccc----cCCccchhhHHHHHH-HHHHHHHHHHHHHhHHHHHhhhh--HHHHHHHHHH
Q 040949 379 VFLVCLFVMAFAWSWGPLGWLIPSE----TFPLETRTAGFAFAV-SSNMFFTFLIAQAFLSMMCHMRA--YIFFFFAGWI 451 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 451 (490)
++.-.+.+......+...-.-++.| -+|++..+...+... ..+.+..+.+..+...+.+..+. ..++..+..+
T Consensus 125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~ 204 (354)
T PF05631_consen 125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVL 204 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHH
Confidence 4444444444443333221112233 345555555555554 23444455555566666666543 3444444444
Q ss_pred H-HHHHHHHhhcccCCCC
Q 040949 452 L-VMGLFALFLLPETKGV 468 (490)
Q Consensus 452 ~-~~~~~~~~~~~~~~~~ 468 (490)
. +.+++.....+|..+.
T Consensus 205 l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 205 LAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHhcccccCCC
Confidence 4 4444444445565443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-05 Score=76.08 Aligned_cols=144 Identities=7% Similarity=-0.001 Sum_probs=91.9
Q ss_pred hchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc----cCchHHHH-HhhHHHHHHHHHHHHHHH
Q 040949 287 TGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDK----VGRRKLLL-QACVQMFISQSTIGGMLL 360 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~r~~~~-~~~~~~~~~~~~~~~~~~ 360 (490)
........|+.+++.+ .|+++..+|.++.+.-+...+.-++.|+++|| +||||..+ .+.+.++++..++....
T Consensus 23 ~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p- 101 (460)
T PRK11462 23 IIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP- 101 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-
Confidence 3345556666766655 49999999999999999999999999999997 57776655 44455555543332210
Q ss_pred HhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCC-ccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 361 VHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFP-LETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
. ........+..+...++..++..... ...++..|+.+ +++|++..+.-...+.+|+.+++.+...+.+..
T Consensus 102 ----~---~s~~~~~~y~~~~~~~~~~~~t~~~i-py~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 102 ----D---LSMNGKMIYAAITYTLLTLLYTVVNI-PYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred ----C---CCcchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00011122233333344444443323 33456677776 678999999999888888888777766555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.8e-06 Score=76.11 Aligned_cols=115 Identities=20% Similarity=0.127 Sum_probs=78.7
Q ss_pred CCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHH
Q 040949 305 FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCL 384 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (490)
+++...+.......++.++|+++.|++.||+|||+++....+++.++.+..+.... . ..+..-..++...-.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~----~---~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG----T---TSPLGVMMTLCFFRFL 153 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC----C---CCCcchhhHHHHHHHH
Confidence 44556677888889999999999999999999999998888888777764443211 0 0011122333344444
Q ss_pred HHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHH
Q 040949 385 FVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFL 427 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 427 (490)
++.+.+ +-.|+..+.++|....+.||.-.+....+...|...
T Consensus 154 LGiGIG-GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 154 LGIGIG-GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhcccc-CCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 555544 347888888999999999998877765555444333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00017 Score=68.04 Aligned_cols=42 Identities=2% Similarity=-0.240 Sum_probs=33.9
Q ss_pred ccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040949 397 GWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 397 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
..++-+++..|..-|+.+.+.|++.++|+-.-..+.-++.|.
T Consensus 426 i~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 426 IMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 345557888899999999999999999987777776666653
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-08 Score=99.68 Aligned_cols=145 Identities=16% Similarity=0.050 Sum_probs=99.6
Q ss_pred hhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHH
Q 040949 309 ASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMA 388 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (490)
..+...+...++.++|.++.|+++||+|||+.+..+..+..++.++..+... ..+.+...+.-.+.+.+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~R~~~G~~ 115 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS-----------YNNFWMLLIGRFLIGFG 115 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc-----------ccccccccccccccccc
Confidence 3567788888999999999999999999999999998888888777765210 01344445555555555
Q ss_pred hhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh---hhHHHHHHHHHHHHHHHHHHhhcccC
Q 040949 389 FAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM---RAYIFFFFAGWILVMGLFALFLLPET 465 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (490)
.+. ..+....++.|..|++.|+...++.+....+|..++..+.-...+.. .|........+..+...+...++||.
T Consensus 116 ~g~-~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 116 IGG-AYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 443 35566778899999999999999888887777766655543332212 24444445554444445555677765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-06 Score=80.40 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=123.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
.+-.+...|........+-++.-++.+++.+|+|+-+++.+++....+=.+..+..+|.|+.+-..+++|+..+..+.+.
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 34566667777778888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccchHHhHHHH-HHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc
Q 040949 146 PLFLSEIAPVQHRGAVNILFQL-FVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV 211 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 211 (490)
.+|++...||+-|..+-++++. ..++|--+|.++ ++.....++=|..|.+.++.+++.+++...
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI--GG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI--GGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh--hhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888764 456788888888 555566688999999988888776555433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00017 Score=69.31 Aligned_cols=52 Identities=8% Similarity=0.001 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHH
Q 040949 123 NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLV 179 (490)
Q Consensus 123 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 179 (490)
.++..++.-++.|++.+.......++.+. +|++ .+..+..|.+++++++.++
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 57777788889999999888888887774 5533 4555666666666665554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00027 Score=67.29 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=92.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL--NIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
|-++.+..+.......+..++.+++.++++|+|+|+++.++.++..++.++..+.+ +.+..++..++.++|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 34566677788888888888899999999999999999999999999999998876 7889999999999999999999
Q ss_pred HHHHhhhcCCC-------CccchHHhHHHHHHHHHHHHHHHH
Q 040949 145 VPLFLSEIAPV-------QHRGAVNILFQLFVTIGIFLANLV 179 (490)
Q Consensus 145 ~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~ 179 (490)
..++++|..+- ++-|...+......=+|..++..+
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999887642 233566666666666666666644
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=9e-06 Score=78.80 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=105.4
Q ss_pred HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHH
Q 040949 301 QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVF 380 (490)
Q Consensus 301 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
++.+....+.+...+.+.++.+++.+.++.+.||++..+.+....++.++..++-.. .++.+..++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--------------~~s~~~~ia 139 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--------------VHSFPGLIA 139 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHH
Confidence 344566778889999999999999999999999999555554443333332222211 123444445
Q ss_pred HHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH------hhhhH-HHHHHHHHHHH
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC------HMRAY-IFFFFAGWILV 453 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~ 453 (490)
.-++.+..-+ +..|....++..-+.+++|+.-+|+.++...+|+++++.+...+.+ ..||. .+.+-+++.++
T Consensus 140 lr~llGl~es-~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 140 LRFLLGLFES-GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHhc-ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 5555555544 4455556777899999999999999999999999999998887644 22444 55555666667
Q ss_pred HHHHHHhhcccCCC
Q 040949 454 MGLFALFLLPETKG 467 (490)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (490)
.++++++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 77777777876543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0028 Score=61.62 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=137.8
Q ss_pred CchHHHHHHHHHHH-HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh---------h----------------
Q 040949 69 DNQILQLFTSSLYL-AALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA---------L---------------- 122 (490)
Q Consensus 69 s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~---------------- 122 (490)
+++.+..+-....+ +..+......+++++++|.+++-+....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56667777665555 445668889999999999999887777766666665552 0
Q ss_pred ------hHHHHHHHHHHhhhhhhhhhh-hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc-------cCC
Q 040949 123 ------NIWMLIIGRILLGIGVGFGNE-AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK-------LHP 188 (490)
Q Consensus 123 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~-------~~~ 188 (490)
+.|.+.+.-+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.+++..+...... ...
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 112333333333333233333 346778899999999999999999999999999877544333 112
Q ss_pred CchHHHHHh-hHH---HHHHHHHHhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHH
Q 040949 189 HGWRVSLAL-AGV---PAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKE 264 (490)
Q Consensus 189 ~~wr~~f~~-~~~---~~~~~~~~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (490)
..|...... .++ .+++......++.+.. ..+++. . .....+++++.+.+.++
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~~------------------~---~~~~~~kk~k~k~s~~e 271 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPRF------------------Y---PSAKKKKKKKPKMSLKE 271 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCcccc------------------c---hhhhcccccCCCccHHH
Confidence 456544322 212 2222222222221100 000000 0 01111222233444444
Q ss_pred hcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCch----hHHHHHHHhHHHHHHHHhhhhhhcccCchHH
Q 040949 265 LMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDA----SLLSSVITGTVNVLSTLVSIYAVDKVGRRKL 340 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 340 (490)
-++...+.+.+..+++...++......+..-.....++.--++.+ .|......++..++..++++.+.+|+|-+..
T Consensus 272 s~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~ 351 (491)
T PF03219_consen 272 SFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTA 351 (491)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444333335555555555544333333333223333333223333 2344555667777777788889999887766
Q ss_pred HHHhhHHHH
Q 040949 341 LLQACVQMF 349 (490)
Q Consensus 341 ~~~~~~~~~ 349 (490)
..+.-..+.
T Consensus 352 AlitPiv~l 360 (491)
T PF03219_consen 352 ALITPIVIL 360 (491)
T ss_pred HHHhHHHHH
Confidence 655444333
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00024 Score=65.70 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=120.5
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhh-hhcchhHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCT-KFGRKPTILVASSFFLAGAGISSG---ALNIWMLIIGRILLGIGV 138 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~ 138 (490)
.+-||++..|..-+.+....|..++....|++.. |.++|+.-.+++....++..+..+ ..+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 5668999999999999999999999999999888 678888888888887777665444 467889999999999999
Q ss_pred hhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc--------cCCCchHHHHHhhHHHHHHHHHHh
Q 040949 139 GFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK--------LHPHGWRVSLALAGVPAIFLFIGS 209 (490)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~--------~~~~~wr~~f~~~~~~~~~~~~~~ 209 (490)
|.......+..-|..++++.|..+|.+.....++..++..+++.... .+..++-.+|.+.++..++.+.+.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888887544322 123567778887777666554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=70.49 Aligned_cols=180 Identities=15% Similarity=0.081 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCc-hhHHHHH----HHhHHHHHHHHhhhhhhcccCchHHHHHhhH
Q 040949 272 PPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKND-ASLLSSV----ITGTVNVLSTLVSIYAVDKVGRRKLLLQACV 346 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~----~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 346 (490)
+.......+..+.............+......+.+.. ..+.... ..++..++.+...|.++||+|||..+.....
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 3444445555555444443333333333333322221 1222222 3367788888999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHH
Q 040949 347 QMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTF 426 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 426 (490)
...+......+. .++.++...+.+ ++. .......+++++....+.|....|+.+.....+..
T Consensus 101 ~~~l~~~~~~~~----------------~~~~~~~~~l~g-~~~-~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~ 162 (463)
T KOG2816|consen 101 GTILPALCLLFQ----------------GYWFFLLLGLSG-GFS-AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLV 162 (463)
T ss_pred HHHHhHHHHHHH----------------HHHHhhhccccc-chh-hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHh
Confidence 666655554431 133333222222 222 23445577889999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhhHHHHHHHHH-HHHHHHHHHhhcccCCCCC
Q 040949 427 LIAQAFLSMMCHMRAYIFFFFAGW-ILVMGLFALFLLPETKGVP 469 (490)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 469 (490)
++|.+.+.+.+..+....+..+.+ ..+.......++||+..++
T Consensus 163 ~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 163 IGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 999999999998876554444444 4444445666778765444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.9e-05 Score=55.13 Aligned_cols=66 Identities=20% Similarity=0.370 Sum_probs=56.4
Q ss_pred HHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhH
Q 040949 281 QVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACV 346 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 346 (490)
..+..++......-|.|.++++.|+++.+.|.+.++..+..+++.++.|.++||.++++.......
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 344455566778888999999999999999999999999999999999999999999887765443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=60.48 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHH---HhcccCCCchHHHHHhhH
Q 040949 123 NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNY---GTAKLHPHGWRVSLALAG 199 (490)
Q Consensus 123 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~---~~~~~~~~~wr~~f~~~~ 199 (490)
.++..++.-.+.|.+.|......+...++.- ++. ..-+.+|.++++.+..++.. .....+..+=..-|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P-~~y----tqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLFP-SEY----TQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcCC-HHH----HHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 4677777888899999988888888777754 333 22233444444444433311 111111222223334444
Q ss_pred HHHHHHHHHhhcccCch
Q 040949 200 VPAIFLFIGSIVITETP 216 (490)
Q Consensus 200 ~~~~~~~~~~~~~~esp 216 (490)
+..++.++....+|+.|
T Consensus 191 ~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHHHHHHHHHHHhhcch
Confidence 44444455555677776
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=69.94 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhh---h------HHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCC---ccchHHhHHHHHH
Q 040949 102 PTILVASSFFLAGAGISSGAL---N------IWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQ---HRGAVNILFQLFV 169 (490)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 169 (490)
|+++++.++..+|.++..++. + .+.++++-.+.++|.|+.-|...++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888889999988855442 2 367899999999999999999999999999866 3567788999999
Q ss_pred HHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc
Q 040949 170 TIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV 211 (490)
Q Consensus 170 ~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 211 (490)
++|..++..+ .....++.+|.+.|.+.++..++.++..+.
T Consensus 82 n~G~~~~~~~--~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTL--VPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHC--CCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhccc--chhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999887 555556789999999988887776555444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.6e-05 Score=54.84 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=59.0
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLI 128 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 128 (490)
|.++|.++.|++.+.+++||.+|.+...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 21 ~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 21 DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 3488999999999999999999999999999998899999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00094 Score=67.57 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=92.7
Q ss_pred hHHHhHHHHH-HHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc-cCchHHHHHhhHHHHHHHHHHHHHHHHhhccccC
Q 040949 291 AIMFYAPVLF-QTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDK-VGRRKLLLQACVQMFISQSTIGGMLLVHLKATSN 368 (490)
Q Consensus 291 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (490)
++...+..++ +..|++...+..+........-+..+++|+++|+ +|+++.+..+.++..++..++.+.... .
T Consensus 5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~------~ 78 (654)
T TIGR00926 5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP------S 78 (654)
T ss_pred ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc------c
Confidence 3334444444 4468888888777777777777778889999996 699999998888888887666542110 0
Q ss_pred cccchhhHHHHHHHHHHHHHhhccccccccccccccCCcc---chhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 369 TLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLE---TRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
..........++.+.+..+|.+.. -|...+...|.++++ .+.....+.....++|+.+++.+.+++.+..
T Consensus 79 ~~~~~~~~~~l~gLaLia~G~Ggi-Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 79 SGHPLHDLLDLLGLALIALGTGGI-KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred cccchHHHHHHHHHHHHHhhcccc-ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000111222334444444444433 444556667777654 3667788888889999999999999887553
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00052 Score=59.25 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=39.7
Q ss_pred CCccchHHhHHHHHHHHHHHHHHHHHHHhcccC-----CCchHHHHHhhHHHHHHHHHHhhcc
Q 040949 155 VQHRGAVNILFQLFVTIGIFLANLVNYGTAKLH-----PHGWRVSLALAGVPAIFLFIGSIVI 212 (490)
Q Consensus 155 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~-----~~~wr~~f~~~~~~~~~~~~~~~~~ 212 (490)
.|+|+..+.+...+.++|.++..+. .....+ ..+|++.+.+.+++.++.+++..++
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888888888999999887665 333311 2469999999888877665554443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=51.09 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=41.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHH
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFF 111 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 111 (490)
.|+|..|+|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3899999999999999999999999999999999998887766544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0021 Score=63.87 Aligned_cols=142 Identities=14% Similarity=0.050 Sum_probs=109.6
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhhhhh--------------------
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSGALN-------------------- 123 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-------------------- 123 (490)
++|.+...+.-..+.+.-......+.++.++|. +||-+++.++.++..++..+..++..
T Consensus 67 ~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~ 146 (571)
T KOG1237|consen 67 ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCES 146 (571)
T ss_pred HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccC
Confidence 346677788888888888888999999999994 78889999888888888655444311
Q ss_pred -----HHHHHHHHHHhhhhhhhhhhhHHHHhhhcCC---CC---ccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchH
Q 040949 124 -----IWMLIIGRILLGIGVGFGNEAVPLFLSEIAP---VQ---HRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWR 192 (490)
Q Consensus 124 -----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr 192 (490)
...+..+.-+..+|.|+.-|...++-+|-++ ++ ++...+.++....++|..++..+ .....+..+|.
T Consensus 147 ~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~--~vyiq~~~~w~ 224 (571)
T KOG1237|consen 147 PSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV--LVYIQDNVGWK 224 (571)
T ss_pred cchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH--HHhhhhcccce
Confidence 1356667778888999999999999999998 22 22367888889999999998877 55555678999
Q ss_pred HHHHhhHHHHHHHHHH
Q 040949 193 VSLALAGVPAIFLFIG 208 (490)
Q Consensus 193 ~~f~~~~~~~~~~~~~ 208 (490)
+.|.+..+...+.+++
T Consensus 225 lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 225 LGFGIPTVLNALAILI 240 (571)
T ss_pred eeccHHHHHHHHHHHH
Confidence 9998877766655443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0063 Score=58.86 Aligned_cols=129 Identities=5% Similarity=-0.046 Sum_probs=79.4
Q ss_pred chhHHHHHHHhHHHHHH-HHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccc--c-------Ccccch----
Q 040949 308 DASLLSSVITGTVNVLS-TLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKAT--S-------NTLTTT---- 373 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~---- 373 (490)
+...++.+...+...+. .++.+++++|++|++.+..........++++++.....-... . ...+.+
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 44555555444444444 677899999999999888777777666666665543211000 0 000000
Q ss_pred ----hhHHHHHHHHHHHHHhhccccc-cccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040949 374 ----QAGFVVFLVCLFVMAFAWSWGP-LGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC 437 (490)
Q Consensus 374 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (490)
..|........ .-.++....+ +.|.+++|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 123 i~~~~~W~~~~FYv~-~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFALFYVM-AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111 1112222222 668889999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.12 Score=49.23 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCchHHHHHHHHHHH-HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhh---------hh--------------
Q 040949 68 YDNQILQLFTSSLYL-AALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGA---------LN-------------- 123 (490)
Q Consensus 68 ~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~-------------- 123 (490)
.++..++++-+..-+ +..+..++.+++.+++.|.+++-..+..+....+++++. ++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 367778888888888 668889999999999999999988888887777777763 01
Q ss_pred ---------HHHHHHHHHHhhhhhhhhhh-hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHh
Q 040949 124 ---------IWMLIIGRILLGIGVGFGNE-AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGT 183 (490)
Q Consensus 124 ---------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 183 (490)
.|...+.-.+.=+-...... .-.....|.+..+|-.|..++++.+.+++..++..+....
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 13333333333332222222 3345678889889999999999999999999998875443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0035 Score=58.68 Aligned_cols=127 Identities=18% Similarity=0.028 Sum_probs=81.6
Q ss_pred cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhH--HHHH
Q 040949 303 VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAG--FVVF 380 (490)
Q Consensus 303 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 380 (490)
+| +.+.+-+...++.+..++..+.+-|+.||.|-|.....+.....++..+=.+... +..++..+ ....
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~--------p~v~~~f~~~l~~~ 145 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL--------PFVPPLFRRPLTHT 145 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC--------ccccccchhhhhHH
Confidence 36 5566677888888999999999999999999999999998888887765544221 00112222 1122
Q ss_pred HHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 381 LVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
.-.+........ ..+..-...--+|+++|+++..+..+.+.+|.+++..+-..+..+.
T Consensus 146 Gq~iaa~Aq~Fi-m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 146 GQSIAAAAQPFI-LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hHHHHHHhhhHh-hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 222222111111 1111122334589999999999998888888888877766665443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0024 Score=61.90 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccC----chHH-HHHhhHHHHHHHHHHHHHHHHhhccccCccc
Q 040949 297 PVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVG----RRKL-LLQACVQMFISQSTIGGMLLVHLKATSNTLT 371 (490)
Q Consensus 297 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g----~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
|.+.+++|.++.+.........+--. ..++.|.++|.+. |||. +.++.++..++...+..... .
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~----------~ 82 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA----------S 82 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc----------c
Confidence 44556779999888777766666544 3567899999873 4444 44455544444444433211 1
Q ss_pred chhhHHHHHHHHHHHHHhhccccccccccccccC---CccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH-H
Q 040949 372 TTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETF---PLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFF-F 447 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 447 (490)
..+.....+++.+...+.... -.+.-+...|.. |.+ +|...+.......+|+.++..+.|.+.+..++...+. .
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 122223333333333333322 223344445654 333 7788888889999999999999999988877553333 3
Q ss_pred HHHHHHHHHHHHhhcccC
Q 040949 448 AGWILVMGLFALFLLPET 465 (490)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (490)
+....+..+......+|+
T Consensus 161 ~~~~~l~~~~~~~~~~e~ 178 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEER 178 (433)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 333334433444445553
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.33 E-value=5e-05 Score=75.07 Aligned_cols=159 Identities=9% Similarity=-0.054 Sum_probs=0.5
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHH
Q 040949 278 VLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGG 357 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 357 (490)
+.+..+.+..........++.+-++++++.+++|++.+..-++.++..++..++.+|-+|-+.+-.+.++++++.++..+
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 33334444434444444455565677999999999999999999999999999999988888898999999999888776
Q ss_pred HHHHhhcc-cc------------C--c-----------------ccchhhHHHHHHHHHHHHHhhc---ccccccccccc
Q 040949 358 MLLVHLKA-TS------------N--T-----------------LTTTQAGFVVFLVCLFVMAFAW---SWGPLGWLIPS 402 (490)
Q Consensus 358 ~~~~~~~~-~~------------~--~-----------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 402 (490)
-.+..... .. . . ............+.+.....+. ...++..+++-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 43322110 00 0 0 0001111111222222222222 23557788999
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040949 403 ETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMM 436 (490)
Q Consensus 403 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (490)
|.++++..+...|+......+|-++|-.+.+...
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 9999999999999999988888777766665443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.028 Score=45.45 Aligned_cols=109 Identities=13% Similarity=-0.017 Sum_probs=76.6
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhh
Q 040949 311 LLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFA 390 (490)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
..-..+......+..++.+.+.+++|.|+.+.++..+..+-...... .+.+..+....+.+.+.+
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---------------~~~~~l~~~s~l~G~~~a 104 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---------------PNSYTLYPASALLGFGAA 104 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHhhhhH
Confidence 34455566667777888899999999999999888877654443321 345556666667777777
Q ss_pred ccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 040949 391 WSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSM 435 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (490)
..|.+.. .++.+...++.+++..++...+...+..+|..+.-.+
T Consensus 105 ~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 105 LLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543 4556788888899999988888887777776654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0093 Score=59.96 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
....++.+..+.+......+..-+..+=++++++.++.|++....-++..+...+..+...|..|.+.+-.+.++++++.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34444455555544433333333344445569999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhh------------cccc---------------------Ccc---cchhhHHHHHHHHHHHHHh-hccccc
Q 040949 353 STIGGMLLVHL------------KATS---------------------NTL---TTTQAGFVVFLVCLFVMAF-AWSWGP 395 (490)
Q Consensus 353 ~~~~~~~~~~~------------~~~~---------------------~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~ 395 (490)
++..+-....- .... +.. ..+...+.++++..+..+. .....+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 88876522210 0000 000 0111122223222222222 223456
Q ss_pred cccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh------------------h-hHHHHHHHHHHHHHHH
Q 040949 396 LGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM------------------R-AYIFFFFAGWILVMGL 456 (490)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~ 456 (490)
+..+++-|...++......|+.+.+..+|-++|-.+.+.....+ | |+.-+++++.+.+...
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999998888887777776664321 2 3333444445555555
Q ss_pred HHHhhcccCCCC
Q 040949 457 FALFLLPETKGV 468 (490)
Q Consensus 457 ~~~~~~~~~~~~ 468 (490)
+.+++.|++..+
T Consensus 337 ~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 337 VPLFFFPKELPK 348 (735)
T ss_pred HHHHhCcccCcc
Confidence 556666665443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0063 Score=42.93 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=59.8
Q ss_pred hhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHH
Q 040949 289 INAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGG 357 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 357 (490)
-+.+...+|.+.++.++|.++.+++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 355666889999999999999999999999999999999999999988888888888877777776665
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.12 Score=49.61 Aligned_cols=165 Identities=12% Similarity=-0.017 Sum_probs=85.8
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHH
Q 040949 278 VLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIG 356 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 356 (490)
+.+..+....+.-...+-.|.++.+. .-+-.-.+.....-.+..++.....|...||..|.+......+..-++...-.
T Consensus 7 Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~ 86 (432)
T PF06963_consen 7 LYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASC 86 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHH
Confidence 33344444444455555666677655 23444455555666677777888889999999999887777665554444333
Q ss_pred HHHHHhhccccCcc-cchhhHHHHHHHHHHHHHhhccccc----cccccccccC--CccchhhHHHHHHHHHHHHHHHHH
Q 040949 357 GMLLVHLKATSNTL-TTTQAGFVVFLVCLFVMAFAWSWGP----LGWLIPSETF--PLETRTAGFAFAVSSNMFFTFLIA 429 (490)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~ 429 (490)
.............. ........+....+++.....+... +---++..+. ++......++.+.-+-...-.++|
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaP 166 (432)
T PF06963_consen 87 ALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAP 166 (432)
T ss_pred HHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 33222221111000 0111111122222222211111111 1111222223 334456666666666777899999
Q ss_pred HHhHHHHHhhhhH
Q 040949 430 QAFLSMMCHMRAY 442 (490)
Q Consensus 430 ~~~~~~~~~~~~~ 442 (490)
.+.|.+.+..+..
T Consensus 167 l~vG~l~t~~s~~ 179 (432)
T PF06963_consen 167 LFVGLLMTFASPV 179 (432)
T ss_pred HHHHHHhhccCHH
Confidence 9999998876644
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00031 Score=64.65 Aligned_cols=117 Identities=9% Similarity=0.041 Sum_probs=2.4
Q ss_pred HHHHHHhHHHHHHHHhhhhhhccc-CchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhh
Q 040949 312 LSSVITGTVNVLSTLVSIYAVDKV-GRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFA 390 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
..+..++++..+|+.+..+..-+. .+|++.. ..+.=.+..-++...... .........-.+.++.++...+++...+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~-p~~~~~~~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQ-PRPRYLPVLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhh-cccccCCCcccchHHHHHHHHHHHHccc
Confidence 346678899999999887643221 2333332 211111111111111000 0000000011233444444444444433
Q ss_pred ccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 040949 391 WSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQA 431 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (490)
.. .++...+.++..++++|..+-.+....-..|-..|..+
T Consensus 264 yl-~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 264 YL-STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ----HHHH---------------------------------
T ss_pred hh-hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 44566677888888888777666666655555555443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.2 Score=49.68 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=78.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHH-HHHHH-HHHHHHH----hhhhhH-HHHHHHHHHhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILV-ASSFF-LAGAGIS----SGALNI-WMLIIGRILLGIGVG 139 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~-~~~~~-~~~~~~~----~~~~~~-~~l~~~r~l~G~~~~ 139 (490)
|-+..+.+.+.++++.|.++|+...+++.++.-++....- +..+. .++..+. ++.... ..+...-++.++..|
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888999999999999999999988744333322111 11111 1111111 111111 222334556778888
Q ss_pred hhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHH
Q 040949 140 FGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFL 205 (490)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 205 (490)
+..|....+..+... ++-++..|-......+|.++|.++..... .+..|-....++.+.+.++.
T Consensus 126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL-lp~lG~~~t~~~~a~l~~~~ 189 (521)
T PRK03612 126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL-LPRLGLIRTAALTGSLNLLA 189 (521)
T ss_pred HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHH
Confidence 888887776665332 23456677788888888888887753332 23345444444444444433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0066 Score=56.92 Aligned_cols=159 Identities=16% Similarity=0.028 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc----cCchHHHHHhh-HH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDK----VGRRKLLLQAC-VQ 347 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~r~~~~~~~-~~ 347 (490)
+.+....+....+ .+...-..|.|.++++.|.+....+.......+.+++.+++.|..+|| +||||..+... ..
T Consensus 33 ~li~v~~ia~Gvq-f~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 33 KLISVASIAAGVQ-FGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHH-HHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 3333333333333 345666678888999999999988888888888999999999999996 68888766544 44
Q ss_pred HHHHHHHHHHHHHHhhccccCcccc---hhhHHHHHHHHHHHHHhhccccccccccccccCCccchhh-HHHHHHHHHHH
Q 040949 348 MFISQSTIGGMLLVHLKATSNTLTT---TQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTA-GFAFAVSSNMF 423 (490)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~ 423 (490)
.+++..++.....+...-.++.... ......++...++-........| .-++..|+..++.+.+ +++....+..+
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp-~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGP-CRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhh-HHHHHHHhccChhhhhccchhHHHHHHh
Confidence 4555555544333222211111111 11112222223333333333333 3456678877776666 88888888888
Q ss_pred HHHHHHHHhH
Q 040949 424 FTFLIAQAFL 433 (490)
Q Consensus 424 ~~~~~~~~~~ 433 (490)
|+.++-...+
T Consensus 191 GnvLGY~~g~ 200 (498)
T KOG0637|consen 191 GNVLGYALGS 200 (498)
T ss_pred cceeeeeccc
Confidence 8776654443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.33 Score=46.73 Aligned_cols=105 Identities=20% Similarity=0.315 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh---hhcchhHHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHH
Q 040949 74 QLFTSSLYLAALFASFVASKVCT---KFGRKPTILVASSFFLAGAGISSGA------------------LNIWMLIIGRI 132 (490)
Q Consensus 74 g~~~s~~~~~~~i~~~~~G~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~ 132 (490)
+...-...++..+++.+.+.+++ ++||++.+.++..+..++.++.-.. +++...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 33344444555556666667764 6899999999999988888876553 24667888889
Q ss_pred HhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHH
Q 040949 133 LLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLV 179 (490)
Q Consensus 133 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 179 (490)
+.|++-+......+..+++.+ +++|..+.++...-..++..++...
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999 6888999998888888877765544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.18 Score=45.99 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=82.8
Q ss_pred hhHHHhHHHHHHHcCCCC--chhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 040949 290 NAIMFYAPVLFQTVGFKN--DASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367 (490)
Q Consensus 290 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
.......+.+..+.+.+. ...+.......+...++.++.|.+.||.|||+.+..+......+.+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------- 89 (338)
T COG0477 19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--------- 89 (338)
T ss_pred chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC---------
Confidence 344445566666665554 367788888888888888999999999999977666655433332222221
Q ss_pred CcccchhhHHHHHHHHHHHHHhhccccccccccccccCCc-cchhhHHHHHHH-HHHHHHHHHHHHhHHHHHh
Q 040949 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPL-ETRTAGFAFAVS-SNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 438 (490)
.....+.........+.+.+ ...+....+..|..|+ +.|+...+.... ....+..+++.+.+.+...
T Consensus 90 ---~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 ---PNVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred ---ccchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222222222 3345566777888887 677888888777 4667777777666666554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.39 Score=45.50 Aligned_cols=158 Identities=10% Similarity=0.031 Sum_probs=92.5
Q ss_pred HHhHHHHHHH-cCCCCchhHHHHHHHh-HHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcc
Q 040949 293 MFYAPVLFQT-VGFKNDASLLSSVITG-TVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTL 370 (490)
Q Consensus 293 ~~~~~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (490)
.+..|++.+. +|++.++..--.-+.. -..+...+....+.|.++.|..++...+...+...++.+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~------------- 90 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF------------- 90 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------------
Confidence 3344444444 6888877653333322 334455566788999999999988887776666555443
Q ss_pred cchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh--hHHHHHHH
Q 040949 371 TTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR--AYIFFFFA 448 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 448 (490)
..+.....+.-+..+.... .-...++++-..+|+++--++.+........|..++..++-.+....+ +.....+.
T Consensus 91 -~~sv~~mq~~q~~yg~~~a--~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~is 167 (412)
T PF01770_consen 91 -GTSVLAMQLMQFFYGLATA--AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYIS 167 (412)
T ss_pred -HCcHHHHHHHHHHHHHHHH--HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1233334444444443332 122334455556677777778888888888887777777766665333 33333444
Q ss_pred HHHHHHHHHHHhhcccCC
Q 040949 449 GWILVMGLFALFLLPETK 466 (490)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~ 466 (490)
......+.+..+++|..+
T Consensus 168 l~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 168 LASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 444555555556666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.32 Score=47.63 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=71.7
Q ss_pred HHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhc--cccC-------cccch--------hhHHHHHHHH
Q 040949 321 NVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLK--ATSN-------TLTTT--------QAGFVVFLVC 383 (490)
Q Consensus 321 ~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~--------~~~~~~~~~~ 383 (490)
.++...+..++++++++.++.-.........+.++++..+..-. +.+. ..+.. ..|...+..+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34556667899999999998877766666666666665432111 1000 00000 0111111111
Q ss_pred HHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040949 384 LFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMC 437 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (490)
..-.-......-+.|.+++|..+.++..+..++....++++..+++.+...+.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111122458889999999999999999999999999999999888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.015 Score=51.55 Aligned_cols=134 Identities=10% Similarity=-0.034 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcC
Q 040949 74 QLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIA 153 (490)
Q Consensus 74 g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 153 (490)
|.+.-+-.+...+..+.+....||+---+=+.+..++.+.+..+.+++++.++-+.+-.+..++.|.....-.++-+. +
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence 445555556666667777778888655444556667788888999999999999999999988888665554443332 2
Q ss_pred CCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc
Q 040949 154 PVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI 212 (490)
Q Consensus 154 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 212 (490)
.....+.++.+.+.+.++|..-=.......+.+-|...++...+..+.....+++
T Consensus 144 ----~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 144 ----PSIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred ----CCceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 2344555666666666666543112222234567888887766665555544443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.3 Score=46.17 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=80.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHH-----HHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASS-----FFLAGAGISSGALNIWMLIIGRILLGIGVGFGNE 143 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (490)
..++..+...+|.+|..++.--...+ |+ |++-+.+.+ ...+.....-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677888888888877775433222 33 333332222 1222222334468899999999999999999999
Q ss_pred hHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHH
Q 040949 144 AVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVN 180 (490)
Q Consensus 144 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 180 (490)
.....+.|-.++++|..+++....+-++|..++..++
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999884
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.4 Score=42.27 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHH-hhhh-HHHHHHHHHHHHHH
Q 040949 410 RTAGFAFAVSSNMFFTFLIAQAFLSMMC-HMRA-YIFFFFAGWILVMG 455 (490)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 455 (490)
.+...|-.+..+.+|+.+|+.+.+.+.- ..|. ...++.+.+.++++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4566778888888999999988887764 3442 33344444444443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.5 Score=39.85 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCC--Ccc
Q 040949 81 YLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPV--QHR 158 (490)
Q Consensus 81 ~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r 158 (490)
.+..+..+++.+.+..++|.|.++.++....... +..-+=+.++.++-.-...|++.+..+..--+|+++.-.+ ++|
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~ 146 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence 3444556666679999999999999988776542 2333446788999999999999999998887777665432 223
Q ss_pred ---------c----hHHhHHHHHHHHHHHHHHHH
Q 040949 159 ---------G----AVNILFQLFVTIGIFLANLV 179 (490)
Q Consensus 159 ---------~----~~~~~~~~~~~~G~~i~~~~ 179 (490)
. ....+++...-+|..++..+
T Consensus 147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 2 33445555555555555544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.36 Score=45.94 Aligned_cols=119 Identities=8% Similarity=0.039 Sum_probs=74.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCcc---chhhHHH
Q 040949 339 KLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLE---TRTAGFA 415 (490)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~ 415 (490)
|.+..+.++..++.+++.+....... ..........+.+.+...|.+ +.-|....+..|.++++ .|.+...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~-----~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL-----PSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC-----------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh-----hhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHH
Confidence 45667777777777775554321000 011122344555555555544 33455566677888765 3566777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 040949 416 FAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLP 463 (490)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (490)
......++|..++..+.+++.++.++...+....++.+.+++.+..-+
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 788889999999999999999999988777777777776666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.96 E-value=5.3 Score=38.63 Aligned_cols=134 Identities=8% Similarity=-0.048 Sum_probs=83.1
Q ss_pred CCCchhHHHHHHHhH-HHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhc--ccc--------Ccccch
Q 040949 305 FKNDASLLSSVITGT-VNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLK--ATS--------NTLTTT 373 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~ 373 (490)
.+++....+-...-+ ++++..++..++.++..++++...........+++++...+..-. +.+ ...+..
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 344555554444444 556677788899999999999888777777777777776552211 100 000100
Q ss_pred --------hhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040949 374 --------QAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCH 438 (490)
Q Consensus 374 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
+.|.......+.-.-......-+.+..++|....++..+-+++.+...+++..+++.+..++.++
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01222121111111111122235577889999999999999999999999999999998888763
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.075 Score=46.31 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhH
Q 040949 299 LFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACV 346 (490)
Q Consensus 299 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 346 (490)
+.+++|+...+++..+........+...+.|-+.||.|||+....-++
T Consensus 63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtyci 110 (454)
T KOG4332|consen 63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCI 110 (454)
T ss_pred eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehH
Confidence 446778888888877665555556666678899999999986544333
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.81 E-value=4.1 Score=38.54 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccC
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVG 336 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 336 (490)
-.++.+++...........+.+-.+++.+++ +.+. +........+.+.+..++.-.+--+..
T Consensus 18 ~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~ 80 (406)
T KOG1479|consen 18 LVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLN 80 (406)
T ss_pred cHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555666677777777776 4333 334444444444444444444433333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.00 E-value=2 Score=39.99 Aligned_cols=66 Identities=24% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhc-----ccCchHHHHH
Q 040949 275 IIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVD-----KVGRRKLLLQ 343 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~r~~~~~ 343 (490)
+..+...+..+..-..... -.|.+++..|.|-++.+.......=.. --++...+.| |+||||..+.
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccceee
Confidence 4445555555655544444 889999988888777665544332221 2344555666 9999986543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.95 E-value=17 Score=36.77 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=87.5
Q ss_pred HhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc-cCchHHHHHhhHHHHHHHHHHHHHHHHhhcccc-----
Q 040949 294 FYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDK-VGRRKLLLQACVQMFISQSTIGGMLLVHLKATS----- 367 (490)
Q Consensus 294 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 367 (490)
....++...++.+...+.-.............+.+++++|- +||-+.+.++..+..++..++............
T Consensus 59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 33344445567766666666666666667777889999997 578888888888888887766665544322111
Q ss_pred ----CcccchhhHHHHHHHHHHHHHhh-ccccccccccccccCCc----cch--hhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040949 368 ----NTLTTTQAGFVVFLVCLFVMAFA-WSWGPLGWLIPSETFPL----ETR--TAGFAFAVSSNMFFTFLIAQAFLSMM 436 (490)
Q Consensus 368 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (490)
.+.........++...+.....+ .+.-|....+-+|.++. +.+ ..-........++|..++..+..+.-
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 11111222222333333333222 23345556666777772 222 24555666667788888877777776
Q ss_pred HhhhhH
Q 040949 437 CHMRAY 442 (490)
Q Consensus 437 ~~~~~~ 442 (490)
+..++.
T Consensus 219 ~~~~w~ 224 (571)
T KOG1237|consen 219 DNVGWK 224 (571)
T ss_pred hcccce
Confidence 666654
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.49 Score=43.58 Aligned_cols=131 Identities=7% Similarity=-0.050 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHh------hh------hhHHHHHHHHHHhhhhhh
Q 040949 72 ILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS------GA------LNIWMLIIGRILLGIGVG 139 (490)
Q Consensus 72 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~------~~------~~~~~l~~~r~l~G~~~~ 139 (490)
..+.-.-.-.....+..++.|...|+..|+|++...+.+.-++.++++ +. .++..+..+-++.-..++
T Consensus 64 lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~a 143 (503)
T KOG2601|consen 64 LVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAA 143 (503)
T ss_pred hHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHH
Confidence 334444444455667788889999999999998877666544433332 22 245555555444433222
Q ss_pred hhh--hhHHH--HhhhcC----CCCccchHH---hHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHH
Q 040949 140 FGN--EAVPL--FLSEIA----PVQHRGAVN---ILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIF 204 (490)
Q Consensus 140 ~~~--~~~~~--~i~~~~----~~~~r~~~~---~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 204 (490)
... ..+.+ .-.||. ..+.+.... +.....-..-..+.|.+ .+......+-|..-.+.++.+++
T Consensus 144 I~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~--tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 144 IAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVI--TGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred HHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhh--hcccceeechhhhhhhhHHHHHH
Confidence 211 11111 123443 223333333 44545555566777777 44444545666655555555544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.31 E-value=4.4 Score=39.32 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=35.5
Q ss_pred HHHHHHHhhchhhHHHhHHHHHHH--cCCCCchhHHHHHHHh--HHHHHHHH-hhhhhhcccCchHHHHHh
Q 040949 279 LLQVFQQFTGINAIMFYAPVLFQT--VGFKNDASLLSSVITG--TVNVLSTL-VSIYAVDKVGRRKLLLQA 344 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~--~~~~~~~~-~~g~l~d~~g~r~~~~~~ 344 (490)
.+.++.+..-......-.|.++++ .+.|-++.+....... -.-++-++ +=...++|+||||..++-
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 344445544433333467888888 5777666554432211 11223333 334556789999876554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=86.31 E-value=11 Score=36.61 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHhhhhhhcccCchHHHHHhhH
Q 040949 316 ITGTVNVLSTLVSIYAVDKVGRRKLLLQACV 346 (490)
Q Consensus 316 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 346 (490)
...+..++..+....+..|+..|.-+..+.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 3334445555555666667665443444433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.25 E-value=3.7 Score=37.05 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcchh------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 040949 72 ILQLFTSSLYLAALFASFVASKVCTKFGRKP------TILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAV 145 (490)
Q Consensus 72 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (490)
|.-|....|.+|..+.. =+-|+=+-+ .+..-.+++.+......+.+++|...+.-+.-|+-.|..+...
T Consensus 289 qYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNT 363 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNT 363 (409)
T ss_pred cchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHH
Confidence 46688877776654322 112222222 2223334445555667778999999999999999888889988
Q ss_pred HHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHH
Q 040949 146 PLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVN 180 (490)
Q Consensus 146 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 180 (490)
.--+.+-.++++|-.+++....+-++|..++..++
T Consensus 364 f~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 364 FHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 88888888899999999999999999999998883
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.75 E-value=7.2 Score=33.91 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=14.4
Q ss_pred hhhhhcccCchHHHHHhhHHHHH
Q 040949 328 SIYAVDKVGRRKLLLQACVQMFI 350 (490)
Q Consensus 328 ~g~l~d~~g~r~~~~~~~~~~~~ 350 (490)
+-.++.|+..|++...+.+++.+
T Consensus 260 Gk~lAskIS~rtVt~~ggi~Fi~ 282 (294)
T KOG2881|consen 260 GKYLASKISVRTVTLIGGILFII 282 (294)
T ss_pred hHHHhhhheeEEEEEecchhHHH
Confidence 34577888877766665554433
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.87 E-value=21 Score=33.00 Aligned_cols=83 Identities=17% Similarity=0.044 Sum_probs=57.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH----HHH-Hhhh----hhHHHHHHHHHHhhhhhh
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAG----AGI-SSGA----LNIWMLIIGRILLGIGVG 139 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~----~~~-~~~~----~~~~~l~~~r~l~G~~~~ 139 (490)
+--|.+.+.+.|.....+|+...-++.|.--.-+.+..-.++..++ .++ ..|+ ++-+.+.+.-++.|.-.|
T Consensus 41 ~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG 120 (508)
T COG4262 41 GILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVG 120 (508)
T ss_pred ceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 5567799999999999999999888887544433322222222111 111 1233 466788889999999999
Q ss_pred hhhhhHHHHhhh
Q 040949 140 FGNEAVPLFLSE 151 (490)
Q Consensus 140 ~~~~~~~~~i~~ 151 (490)
...|..+.++..
T Consensus 121 ~EiPL~mrml~~ 132 (508)
T COG4262 121 AEIPLLMRMLQR 132 (508)
T ss_pred cchHHHHHHHHH
Confidence 999999998877
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.15 E-value=40 Score=31.73 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHH
Q 040949 297 PVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLL 360 (490)
Q Consensus 297 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 360 (490)
..++... |-|....+....+-+....+...+.|...|+..|+|.+.....+.-++..+.+....
T Consensus 51 sL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi 115 (503)
T KOG2601|consen 51 SLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVI 115 (503)
T ss_pred HHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHh
Confidence 3444444 434444444444444445555566788889999999887776665555554444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 490 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 4e-41 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 490 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 2e-04 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 56/401 (13%), Positives = 125/401 (31%), Gaps = 49/401 (12%)
Query: 78 SSLYLAALFASFVASKVCTKFGRKPTI---LVASSFFLAGAGISSGAL-NIWMLIIGRIL 133
S + +A F+ F+ V + + + L+ ++ + G A +I ++ + L
Sbjct: 69 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128
Query: 134 LGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRV 193
G G G + + RG + ++ +G + L+ + + W
Sbjct: 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL-FLLGMAWFNDWHA 187
Query: 194 SLALAGVPAIFL-FIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKLAS 252
+L + AI + ++ +TP S E + + +QI
Sbjct: 188 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI---- 243
Query: 253 DIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPV-LFQTVGFKNDASL 311
+ ++ L+ + + + I+ ++P L + F D S
Sbjct: 244 --------FMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS 291
Query: 312 LSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLT 371
+ + + TL+ + DKV R M + + +V+ + T
Sbjct: 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL----VTIATIVYWMNPAGNPT 347
Query: 372 TTQAGFVVFLVCLFVMAFA-WSWGPLGWLIPSETFPLE--------TRTAGFAFAVSSNM 422
V ++C+ V+ F + L L E P + T G+ +
Sbjct: 348 -------VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 400
Query: 423 FFTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLP 463
F F G ++ + + ++
Sbjct: 401 AIVGYTVDFFGW------DGGFMVMIGGSILAVILLIVVMI 435
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.46 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.41 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.38 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.34 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.32 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.32 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.08 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=397.89 Aligned_cols=448 Identities=28% Similarity=0.516 Sum_probs=353.8
Q ss_pred chHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 040949 12 TVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVA 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~ 91 (490)
+++.+.+++++++|.+++|||.++++... |.+.+.|..+ .+...+.++.+.|++.+++.+|..+|++++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~---------~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAP---------QNLSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGG---------GCCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCC---------CCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999988653 4444444211 122224467789999999999999999999
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcC
Q 040949 92 SKVCTKFGRKPTILVASSFFLAGAGISS------------------GALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIA 153 (490)
Q Consensus 92 G~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 153 (490)
|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|++.|...+...++++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCccchHHhHHHHHHHHHHHHHHHHHHHhccc------CCCchHHHHHhhHHHHHHHHHHhhcccCchhHHhhcCChHH
Q 040949 154 PVQHRGAVNILFQLFVTIGIFLANLVNYGTAKL------HPHGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVA 227 (490)
Q Consensus 154 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~------~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~ 227 (490)
|+++|++..++.+.+..+|.++++.++...... ...+||+.+.+..++.++.++..+++||||||+..+++.++
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 999999999999999999999999886544332 23579999999999888888888999999999999999999
Q ss_pred HHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCC
Q 040949 228 GHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKN 307 (490)
Q Consensus 228 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 307 (490)
+++.+++..++++.+++..+.++..+++++... .... ...++.........+.+..+......|.|.+.+..+.+.
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTGG-RLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhh-HHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 999998877665544444333333222222221 1122 223455666667777777888888999999999888888
Q ss_pred chhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHH
Q 040949 308 DASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVM 387 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (490)
..........++..+++.++.+++.||+|||+.+..+...+.++.+.+..... .....+..+....++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY----------TQAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh----------cccchHHHHHHHHHHHH
Confidence 87777888888999999999999999999999999888888877776655432 22333444555556666
Q ss_pred HhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh------h-hHHHHHHHHHHHHHHHHHHh
Q 040949 388 AFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM------R-AYIFFFFAGWILVMGLFALF 460 (490)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~ 460 (490)
++..++.++.+.+.+|++|++.|+++.|+.+..+++++.+++.+++.+.+.. + ...++++++++++..++.++
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 6677778888889999999999999999999999999999998887765432 1 23566777778888888889
Q ss_pred hcccCCCCChHHHHHHHhccCCccc
Q 040949 461 LLPETKGVPIDVMVERVWKKHPVWK 485 (490)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (490)
++||||++++||+ |+.+|++++.+
T Consensus 462 ~~PETkg~tLeei-~~~f~~~~~~~ 485 (491)
T 4gc0_A 462 FVPETKGKTLEEL-EALWEPETKKT 485 (491)
T ss_dssp HCCCCTTCCHHHH-GGGTC------
T ss_pred eecCCCCCCHHHH-HHHhCCCCccc
Confidence 9999999999999 88876554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=314.25 Aligned_cols=397 Identities=12% Similarity=0.025 Sum_probs=288.3
Q ss_pred hHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhh
Q 040949 13 VYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVAS 92 (490)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G 92 (490)
+.++......+++.+..+++....++.. .. ..+++ .|..+.|++.+++.++..++++++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------------~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G 83 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAM------PY-------------LVEQG-FSRGDLGFALSGISIAYGFSKFIMG 83 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHH------HH-------------TTSST-TCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-------------HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHH
Confidence 3446666677777777777766654332 11 14456 7889999999999999999999999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHH
Q 040949 93 KVCTKFGRKPTILVASSFFLAGAGISSG----ALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLF 168 (490)
Q Consensus 93 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 168 (490)
+++||+|||+++.++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+
T Consensus 84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCc-hHHHHHhhHHHHHHHHH-HhhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHHH
Q 040949 169 VTIGIFLANLVNYGTAKLHPHG-WRVSLALAGVPAIFLFI-GSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYE 246 (490)
Q Consensus 169 ~~~G~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 246 (490)
.++|.+++|.++.... +..+ ||+.|++.+++.++..+ ..+++||+|++...+++++.. .+.+++.
T Consensus 164 ~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~- 230 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDDY- 230 (451)
T ss_dssp HHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC------
T ss_pred HHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccccc-
Confidence 9999999999954433 3456 99999999888777644 456688887643222111100 0000000
Q ss_pred HHHHHHHHHhhcccc--hHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHH-cCCCCchhHHHHHHHhHHHHH
Q 040949 247 QIKLASDIARQVKHP--FKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQT-VGFKNDASLLSSVITGTVNVL 323 (490)
Q Consensus 247 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 323 (490)
++.++++....+ .++.++ ++.++...+..+...........+.|.++++ .|++..+++.......++.++
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 231 ---NEKAEQELTAKQIFMQYVLP----NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp -----------CCTHHHHHHTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhcccccccchHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 000000111111 233333 3556666666666666777888899999987 699999999999999999999
Q ss_pred HHHhhhhhhccc--CchHHHHHhhHHHH-HHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccccc
Q 040949 324 STLVSIYAVDKV--GRRKLLLQACVQMF-ISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLI 400 (490)
Q Consensus 324 ~~~~~g~l~d~~--g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
+.++.+++.||+ ++|+.+..+..+.. ++.+++... +..+.+.......+.+.+.. ...+....+
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 370 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN------------PAGNPTVDMICMIVIGFLIY-GPVMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC------------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh------------cccCHHHHHHHHHHHHHHHh-chHHHHHHH
Confidence 999999999999 99988876665554 333322210 11233334444444444333 234444567
Q ss_pred ccccCCccchhhHHHHHHHHHHH-HHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 040949 401 PSETFPLETRTAGFAFAVSSNMF-FTFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLL 462 (490)
Q Consensus 401 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (490)
..|.+|++.|+++.|+.+....+ +..++|.+.|.+.+..++...+...+++.+.+.+.....
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999 999999999999998886655555444444444444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=292.13 Aligned_cols=370 Identities=10% Similarity=0.073 Sum_probs=274.6
Q ss_pred HHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 040949 14 YVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFVASK 93 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~ 93 (490)
+.+....++++..+..+++....++.. |.+ .+++|+|..+.|++.+.+.+++.++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL--PQF-----------------QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH--HHH-----------------HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555566666777777776655442 222 2335889999999999999999999999999
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHHHHHH
Q 040949 94 VCTKFGRKPTILVASSFFLAGAGIS---SGALNIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVT 170 (490)
Q Consensus 94 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 170 (490)
++||+|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.+
T Consensus 84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCc-------------------------hHHHHHhhHHHHHHHHHHhhc--ccCchhHHhhcC
Q 040949 171 IGIFLANLVNYGTAKLHPHG-------------------------WRVSLALAGVPAIFLFIGSIV--ITETPTSLIERG 223 (490)
Q Consensus 171 ~G~~i~~~~~~~~~~~~~~~-------------------------wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~ 223 (490)
+|.++++.++..... +..+ ||+.|++.+++.++..+..++ .||+++.. +
T Consensus 164 ~g~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~ 239 (438)
T 3o7q_A 164 FGAIIAVVFGQSLIL-SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---H 239 (438)
T ss_dssp HHHHHHHHHTTHHHH-TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---C
T ss_pred HHHHHHHHHHHHHHh-cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---c
Confidence 999999999544331 2222 999998877776665444333 46654210 0
Q ss_pred ChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHH-HHH
Q 040949 224 NEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVL-FQT 302 (490)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 302 (490)
+++ ++++.+.++++++++ +.++...+..+...........+.|.+ +++
T Consensus 240 ~~~---------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 240 SDA---------------------------KQGSFSASLSRLARI----RHWRWAVLAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp CCS---------------------------STTSHHHHHHHHTTC----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---------------------------cccchhhhHHHHHhC----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 001112234455554 334444455555555567777888998 877
Q ss_pred c-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHH
Q 040949 303 V-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFL 381 (490)
Q Consensus 303 ~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
. |++..+++.......++.+++.++.+++.||++||+.+..+..+..++.+++.. . ++.+ ....
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~-~~~~ 353 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-------------A-GGHV-GLIA 353 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------------C-CHHH-HHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-------------c-CCcH-HHHH
Confidence 6 999999999999999999999999999999999999988887777666555443 1 1222 2333
Q ss_pred HHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hHHHHHHHHHHHHHH
Q 040949 382 VCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AYIFFFFAGWILVMG 455 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 455 (490)
..+.+.+.+ ...+....+..|.+|++ ++++.++.. .+.+++.++|.+.|.+.+..+ +...+...+++.+..
T Consensus 354 ~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 354 LTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344444444 33556677777889866 888888776 677999999999999999988 554444444444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=274.92 Aligned_cols=396 Identities=13% Similarity=0.055 Sum_probs=253.1
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTK-FGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFG 141 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (490)
++++|+|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCCc--cchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc-cCch--
Q 040949 142 NEAVPLFLSEIAPVQH--RGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI-TETP-- 216 (490)
Q Consensus 142 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp-- 216 (490)
.+...+++.|++|+++ |+.++++++.+.++|..++|.++.. ..+..+||+.|++.++..++..+..++. |+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA--AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 7778888999999999999999544 3444689999999877766654443322 2211
Q ss_pred --hHHhhcCChHHHHHHHHH----------------hhCchhhHHHHHH---H---HHHHHHHhhcccchHHhcccCCCc
Q 040949 217 --TSLIERGNEVAGHKALKK----------------IRGVEDVNAEYEQ---I---KLASDIARQVKHPFKELMKRSSMP 272 (490)
Q Consensus 217 --~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~ 272 (490)
+....+.+.++.++..+. ..+..+.++.... . ..........+....+. +.++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 282 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTS-TEHLRV 282 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------C
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccH-HHHHHH
Confidence 000111122333332222 0010000000000 0 00000000000000000 011111
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHH-----HhhH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLL-----QACV 346 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-----~~~~ 346 (490)
...+...+..+.....+.....+.|.+.++. +.+..+.+.......++.+++.++.+++.||++||+... .+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 1122223233333334455566677777664 777667778888888889999999999999999986544 4444
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHH
Q 040949 347 QMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTF 426 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 426 (490)
+.+++...+....... ......+.+.......+.+.+.. ...+....++.|.+|++.|+++.|+.+....+|..
T Consensus 363 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 363 FAGLSFLLMAIPGALY-----GTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHTTTHHHHHHC-----CCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----CCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433321100 00011233344444444444444 33556677889999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 040949 427 LIAQAFLSMMCHMRAYIFFFFAGWILVMGLFALFLLPETKG 467 (490)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
+++.+.+.+.+......+...+.+..+.+++.+...++.++
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 437 LNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876554555555566555555555555554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=271.12 Aligned_cols=336 Identities=14% Similarity=0.113 Sum_probs=253.6
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 040949 63 DNYCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGN 142 (490)
Q Consensus 63 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (490)
.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.|++.+...
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 106 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGG 106 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHH-HhhcccCchhHHhh
Q 040949 143 EAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFI-GSIVITETPTSLIE 221 (490)
Q Consensus 143 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~ 221 (490)
+...+++.|++|+++|++++++.+.+..+|..++|.++ ....+..+||+.|++.+++.++..+ ..+++||+|++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG--GLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH--HHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc
Confidence 99999999999999999999999999999999999994 4444556899999998888777665 45567887642100
Q ss_pred cCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHH
Q 040949 222 RGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQ 301 (490)
Q Consensus 222 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
+ ++.+.++++.+|+ +.++...+..+...........+.|.+++
T Consensus 185 ~---------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (375)
T 2gfp_A 185 R---------------------------------TRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEACSGVLMG 227 (375)
T ss_dssp C---------------------------------CCTTTCSTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCSCSSH
T ss_pred c---------------------------------ccHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1112334445544 33444444455555556677788888877
Q ss_pred H-cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHH-HHHHHHHHHHHHHHhhccccCcccchhhHHHH
Q 040949 302 T-VGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQ-MFISQSTIGGMLLVHLKATSNTLTTTQAGFVV 379 (490)
Q Consensus 302 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (490)
+ .|.++.+.+.......++.+++.++.+++.||.+++. ..+... ...+...+..... ...+.+...
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 295 (375)
T 2gfp_A 228 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF----------GVMNVWTLL 295 (375)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH----------HHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh----------ccccHHHHH
Confidence 6 6888899999999999999999999999999988732 222222 1111111111100 112333334
Q ss_pred HHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHH
Q 040949 380 FLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWI 451 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (490)
....+.+.+.+. ..+....+..|..| +.|+++.|+.+....++..++|.+.+.+.+..++...+....+.
T Consensus 296 ~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 296 VPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 444555555443 35566677789998 89999999999999999999999999998876665555544333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=246.91 Aligned_cols=395 Identities=11% Similarity=0.080 Sum_probs=220.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKF-GRKPTILVASSFFLAGAGISSGAL-NIWMLIIGRILLGIGVGFGNEA 144 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~ 144 (490)
++|..+.|++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+.
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh
Confidence 38999999999999999999999999999999 999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhhhcCCCCccchHHhH---HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc-cCchhHHh
Q 040949 145 VPLFLSEIAPVQHRGAVNIL---FQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI-TETPTSLI 220 (490)
Q Consensus 145 ~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~ 220 (490)
..+++.|++|+++|+++.+. .+.+.++|..++|.++ ....+..+||+.|++.+++.++..+..++. |+.++...
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM--PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS--THHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 99999999999999877666 8999999999999984 444445799999999888776655544432 22110000
Q ss_pred hcCChHHHHHHHHH-hhCch-hhHH--HHHHHHHH------------------------HHHHhhcccchHHh------c
Q 040949 221 ERGNEVAGHKALKK-IRGVE-DVNA--EYEQIKLA------------------------SDIARQVKHPFKEL------M 266 (490)
Q Consensus 221 ~~~~~~~a~~~~~~-~~~~~-~~~~--~~~~~~~~------------------------~~~~~~~~~~~~~~------~ 266 (490)
++++..+..+.+.. .++.. +.+. ........ ...+++.+.++.+. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
T 2xut_A 208 EPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287 (524)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC
T ss_pred CCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc
Confidence 00000011111000 00000 0000 00000000 00011111222111 0
Q ss_pred ---ccCCCchHH--HHHHHHHHHHhhchhhHHHhHHHHHHHcCCCC-chhHHHHHHHhHHHHHHHHhhhhhh----cccC
Q 040949 267 ---KRSSMPPLI--IGVLLQVFQQFTGINAIMFYAPVLFQTVGFKN-DASLLSSVITGTVNVLSTLVSIYAV----DKVG 336 (490)
Q Consensus 267 ---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~g 336 (490)
+....++.. .............+.......+.+..+.+.+. ...+.......++.+++..+.+++. ||.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (524)
T 2xut_A 288 PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG 367 (524)
T ss_dssp CSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC---------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC
Confidence 001111211 11111111111111222222333333333322 2355555555566666666666654 4443
Q ss_pred c----hHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhh
Q 040949 337 R----RKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTA 412 (490)
Q Consensus 337 ~----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 412 (490)
+ ++.+..+..+.+++.+.+.... .........+.+.......+.+.+.+ ...+....+..|..|++.|++
T Consensus 368 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 368 VKLTALRKMGAGIAITGLSWIVVGTIQ-----LMMDGGSALSIFWQILPYALLTFGEV-LVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp ---CCHHHHHTHHHHHHHHHHTTTTTT-----TTTTTTCCCCSHHHHHHHHHHHHHHH-HHHHHHTTTHHHHCCTTCCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHhH
Confidence 2 2344444444444433332110 00000001233334444444444443 335566777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhh------------hHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 040949 413 GFAFAVSSNMFFTFLIAQAFLSMMCHMR------------AYIFFFFAGWILVMGLFALFLLPETKGVP 469 (490)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (490)
++|+.+....+|+.++|.+.+.+.+..+ ...+++.+++.++..++.+...++.++++
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999998876321 11144444444444444444455554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-29 Score=238.09 Aligned_cols=357 Identities=13% Similarity=0.040 Sum_probs=217.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH---HHHhhhhhH-HHHHHHHHHhhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGA---GISSGALNI-WMLIIGRILLGIGVGF 140 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~~~ 140 (490)
++|+|..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++. ....+.+.. ..+...+++.|++.+.
T Consensus 37 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 116 (417)
T 2cfq_A 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116 (417)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999888776532 222333322 1244567777776665
Q ss_pred hhhhHHHHhhhcCCC--CccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcccCchhH
Q 040949 141 GNEAVPLFLSEIAPV--QHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVITETPTS 218 (490)
Q Consensus 141 ~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 218 (490)
..+.....+.++.++ ++|+...+....+.++|..++|.++..... .+||+.|++.++..++..+..++.+|+|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 555444445555433 455777778877788899999988544432 479999998877755555555554443311
Q ss_pred HhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHH
Q 040949 219 LIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPV 298 (490)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
..++++.++ .+ .++....++++.+++ +.++...+..+.....+.....+.|.
T Consensus 194 ~~~~~~~~~----------~~--------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 194 SATVANAVG----------AN--------------HSAFSLKLALELFRQ----PKLWFLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp SSCSSSSSS----------SC--------------CCCCCHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc----------cc--------------cccccHHHHHHHhcC----CchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00 000001122344443 22333333322222233344455677
Q ss_pred HHHHc-C---CCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchh
Q 040949 299 LFQTV-G---FKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQ 374 (490)
Q Consensus 299 ~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (490)
++++. + .+....+.......++.+++.++.++++||++||+.+..+..+.++..+.+.. ..+
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--------------~~~ 311 (417)
T 2cfq_A 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------------ATS 311 (417)
T ss_dssp HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--------------CCS
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--------------hcc
Confidence 76553 3 22344566777777888899999999999999999888776666555433321 112
Q ss_pred hHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHH-HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHH
Q 040949 375 AGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFA-VSSNMFFTFLIAQAFLSMMCHMRAYIFFFFAGWILV 453 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (490)
.+..+....+...+.. ...+..+.++.|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++...+...++..+
T Consensus 312 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l 390 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp HHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHH
Confidence 2223232222232222 12233456778999999999999984 788889999999999999988775544444444433
Q ss_pred HH-HHHHhhcccCCC
Q 040949 454 MG-LFALFLLPETKG 467 (490)
Q Consensus 454 ~~-~~~~~~~~~~~~ 467 (490)
.+ ++.+...+|+++
T Consensus 391 ~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 391 GFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHTTSSCCSCT
T ss_pred HHHHHHHhhhcCCCc
Confidence 33 333444454443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=129.02 Aligned_cols=152 Identities=8% Similarity=-0.068 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHH
Q 040949 273 PLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQ 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 352 (490)
..+....+..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33444444555555555677777888889999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 040949 353 STIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAF 432 (490)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
++..... ..++.+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.
T Consensus 106 ~~~~~~~-----------~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 106 ALFWPAA-----------EIMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHH-----------HTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcc-----------ccccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7763321 1234455555555555555433 445567789999999999999999999999999999999
Q ss_pred HHHH
Q 040949 433 LSMM 436 (490)
Q Consensus 433 ~~~~ 436 (490)
+.+.
T Consensus 174 ~~l~ 177 (438)
T 3o7q_A 174 QSLI 177 (438)
T ss_dssp THHH
T ss_pred HHHH
Confidence 9988
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-12 Score=123.44 Aligned_cols=146 Identities=16% Similarity=0.072 Sum_probs=125.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhh--cchhHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHhhhhhh
Q 040949 65 YCKYDNQILQLFTSSLYLAALFASFVASKVCTKF--GRKPTILVASSFFL-AGAGISSGA--LNIWMLIIGRILLGIGVG 139 (490)
Q Consensus 65 ~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~ 139 (490)
.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.-++.|++.+
T Consensus 282 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 361 (451)
T 1pw4_A 282 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 361 (451)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHh
Confidence 3588999999999999999999999999999999 99999988877776 677776666 377888888999999999
Q ss_pred hhhhhHHHHhhhcCCCCccchHHhHHHHHHHH-HHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhcc
Q 040949 140 FGNEAVPLFLSEIAPVQHRGAVNILFQLFVTI-GIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIVI 212 (490)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 212 (490)
...+...+++.|.+|+++|+++.++.+....+ |..++|.+. ....+..||+..|++.++..++..+..+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV--GYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999994 444455689999999888777765555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=125.87 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHHH------cCCCCchhHHHHHHHhHHHHHHHHhhhhhhcc-cCchHHHHHhhH
Q 040949 274 LIIGVLLQVFQQFTGINAIMFYAPVLFQT------VGFKNDASLLSSVITGTVNVLSTLVSIYAVDK-VGRRKLLLQACV 346 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~ 346 (490)
..+......+.....++....+.+.++++ .|.+..+.++..+...++..++.++.|+++|| +|||+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34445555555555566666677777754 79999999999999999999999999999999 899999999888
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccc--hhhHHHHHHHHHHHH
Q 040949 347 QMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLET--RTAGFAFAVSSNMFF 424 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~ 424 (490)
+..++.++... .++.+..++...+.+.+.+. ..+....++.|.+|++. |+.+.+..+....+|
T Consensus 94 ~~~~~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 94 LIMLGHIVLAL--------------PFGASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHHHHHHHHHS--------------CCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 88777766543 23444455555555555443 34556677889999988 777888889999999
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 040949 425 TFLIAQAFLSMMCHMRAYIFFFFAGWILVMGLFA 458 (490)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (490)
..++|.+.+.+.+..++...+...++..+.+.+.
T Consensus 159 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888765555554444444333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=120.53 Aligned_cols=168 Identities=8% Similarity=0.020 Sum_probs=121.2
Q ss_pred HHHHHHHhhchhhHHHhHHHHHH-HcC------CCCchhHHHHHHHhHHHHHHHHhhhhhhccc-CchHHHHHhhHHHHH
Q 040949 279 LLQVFQQFTGINAIMFYAPVLFQ-TVG------FKNDASLLSSVITGTVNVLSTLVSIYAVDKV-GRRKLLLQACVQMFI 350 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~ 350 (490)
.+..+.....++....+++.+++ +.| ++..+.+...+...++..++.++.|+++||+ |||+.+..+..+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33344444445566677777765 468 9999999999999999999999999999999 999999888887777
Q ss_pred HHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHH---HHHHHHHHHHH
Q 040949 351 SQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAF---AVSSNMFFTFL 427 (490)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~ 427 (490)
+.++... ...+.+..++...+.+.+.+ ...+...+++.|.+|++.|+++.+. .+....+|..+
T Consensus 98 ~~~~~~~-------------~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~ 163 (524)
T 2xut_A 98 GHAFLAI-------------FEHSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF 163 (524)
T ss_dssp HHHHHHH-------------TSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------hcccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 7666554 11134444445555555544 3355667778999999999876666 88889999999
Q ss_pred HHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 040949 428 IAQAFLSMMCHMRAYIFFFFAGWILVMGLFALF 460 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (490)
+|.+.+.+.+..++...+...++..+.+.+...
T Consensus 164 g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 164 ASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877766555554444444444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=121.41 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=121.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 040949 69 DNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVPLF 148 (490)
Q Consensus 69 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (490)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888899999999999999999999999999999988888888888888888888888898887777888899
Q ss_pred hhhcCCCCccchHHhH-HHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCch
Q 040949 149 LSEIAPVQHRGAVNIL-FQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETP 216 (490)
Q Consensus 149 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp 216 (490)
+.|.+|++.|+++.+. ++....+|..++|.+++ ...+..|++..|.+.+++.++..+. ..+.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G--~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG--NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH--THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH--HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 48888899999999954 4444568889998888877776554 34466654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=119.83 Aligned_cols=173 Identities=12% Similarity=0.014 Sum_probs=127.3
Q ss_pred HHHHHHhhchhhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHH
Q 040949 280 LQVFQQFTGINAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGML 359 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 359 (490)
+..+.............|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 85 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-
Confidence 3334444445566667788888889999999999999999999999999999999999999998888888877766542
Q ss_pred HHhhccccCcccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 040949 360 LVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHM 439 (490)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (490)
++.+..+....+.+.+.+ ...+....++.|.+|+++|+++.+..+....+|..++|.+.+.+.+..
T Consensus 86 -------------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 151 (375)
T 2gfp_A 86 -------------SSLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW 151 (375)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred -------------ccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 233444444444444433 335566677789999999999999999999999999999999988877
Q ss_pred hhHHHHHHHHHHHHHHHH-HHhhcccCCC
Q 040949 440 RAYIFFFFAGWILVMGLF-ALFLLPETKG 467 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 467 (490)
++...+...++..+...+ .....||+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 152 NWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 766554444443333333 4455565543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=107.18 Aligned_cols=149 Identities=18% Similarity=0.085 Sum_probs=105.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh-----hHHHHHH-HHHHhhhhhhh
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGAL-----NIWMLII-GRILLGIGVGF 140 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~r~l~G~~~~~ 140 (490)
+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+.. .-+..+++. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 386 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM-S 386 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-H
Confidence 44566667777788888899999999999999999999999888888776665431 1222222 222222322 2
Q ss_pred hhhhHHHHhhhcCCCCccchHHhHHHHHHHHHHHHHHHHHHHhcc----cCCCchHHHHHhhHHHHHHHHHH-hhcccCc
Q 040949 141 GNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAK----LHPHGWRVSLALAGVPAIFLFIG-SIVITET 215 (490)
Q Consensus 141 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es 215 (490)
..+....+.+|.+|.+.|++++++......+|..+++.+...... ....++...|++.++++++..+. ++++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 456778899999999999999999999999998888766322211 11134566788888887776554 5679998
Q ss_pred h
Q 040949 216 P 216 (490)
Q Consensus 216 p 216 (490)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 490 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-13 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.003 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 69.3 bits (168), Expect = 2e-13
Identities = 49/401 (12%), Positives = 109/401 (27%), Gaps = 33/401 (8%)
Query: 73 LQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGI----SSGALNIWMLI 128
L S + +A F+ F+ V + + + A +I ++
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 129 IGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHP 188
+ L G G G + + RG + ++ +G + L+
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180
Query: 189 HGWRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQI 248
A + ++ +TP S + +
Sbjct: 181 DWHAALYMPAFCAILVALFAFAMMRDTPQS----------------CGLPPIEEYKNDYP 224
Query: 249 KLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKN 307
++ A Q + M+ L+ + + + I+ ++P + V F
Sbjct: 225 DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284
Query: 308 DASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATS 367
D S + + + TL+ + DKV R M + ++ +
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL---VTIATIVYWMNPAG 341
Query: 368 NTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFL 427
N V + + + + L L E P + F +
Sbjct: 342 NP-------TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 394
Query: 428 IAQAFLSMMCHMRAY--IFFFFAGWILVMGLFALFLLPETK 466
A A + + F G ++ + + ++ K
Sbjct: 395 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 0.003
Identities = 44/402 (10%), Positives = 102/402 (25%), Gaps = 46/402 (11%)
Query: 75 LFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISS----GALNIWMLIIG 130
+ +++ L +L + + K G + +L + L G L + +++G
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 131 RILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHG 190
I+ GI +GF A + R + + + + A + +
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166
Query: 191 WRVSLALAGVPAIFLFIGSIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEYEQIKL 250
V +G I + T+ P+S A H A
Sbjct: 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS----------------- 209
Query: 251 ASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTVGFKNDAS 310
EL ++ + L + V+ + F T
Sbjct: 210 --------LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVF 261
Query: 311 LLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTL 370
+ + +N + + + G ++ S+
Sbjct: 262 GYVTTMGELLNASIMFFAPL------------IINRIGGKNALLLAGTIMSVRIIGSSFA 309
Query: 371 TTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQ 430
T+ ++ + +F + F + + F + + +
Sbjct: 310 TSALEVVILKTLHMFEVPFLL---VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 431 AFLSMMCHM--RAYIFFFFAGWILVMGLFALFLLPETKGVPI 470
M + L L ++F L + +
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.39 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.38 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-38 Score=306.72 Aligned_cols=404 Identities=12% Similarity=0.014 Sum_probs=277.7
Q ss_pred cchHHHHHHHHHHHhhhhhhcchhcccccccchHHHHhhhhhhhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 040949 11 ITVYVVVCWILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPEVYKRKLHAREDNYCKYDNQILQLFTSSLYLAALFASFV 90 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~ 90 (490)
.++.+|.+...++++.+...+|...++.+. ++ -+|+|+|.+++|++.+++.+++.+++++
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~---p~-----------------~~~~g~s~~~~g~~~s~~~~~~~~~~~~ 78 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAM---PY-----------------LVEQGFSRGDLGFALSGISIAYGFSKFI 78 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHH---HH-----------------TTSSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------------HHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777766654332 11 1235899999999999999999999999
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhhhhhhhhhhHHHHhhhcCCCCccchHHhHHH
Q 040949 91 ASKVCTKFGRKPTILVASSFFLAGAGISSGAL----NIWMLIIGRILLGIGVGFGNEAVPLFLSEIAPVQHRGAVNILFQ 166 (490)
Q Consensus 91 ~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 166 (490)
+|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+
T Consensus 79 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 158 (447)
T d1pw4a_ 79 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 158 (447)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999988764 77899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHH-hhcccCchhHHhhcCChHHHHHHHHHhhCchhhHHHH
Q 040949 167 LFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIG-SIVITETPTSLIERGNEVAGHKALKKIRGVEDVNAEY 245 (490)
Q Consensus 167 ~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 245 (490)
.+..+|..+++.++..... ...+||+.|++.+++.++..+. ..+.+|+|+.......++.. ++..++
T Consensus 159 ~~~~~g~~i~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~- 226 (447)
T d1pw4a_ 159 CAHNVGGGIPPLLFLLGMA-WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDD- 226 (447)
T ss_dssp HHHHHHHTSHHHHHHHHHH-HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC-----
T ss_pred cccchhhhhhhhhhhhHhh-hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh----------hhcccc-
Confidence 9999999999987543332 2248999999988887776554 44566666432211111100 000000
Q ss_pred HHHHHHHHHHhhcccchHHhcccCCCchHHHHHHHHHHHHhhchhhHHHhHHHHHHHc-CCCCchhHHHHHHHhHHHHHH
Q 040949 246 EQIKLASDIARQVKHPFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFYAPVLFQTV-GFKNDASLLSSVITGTVNVLS 324 (490)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 324 (490)
..++.+++ ....+...+...+.+..+......++..........+.|.++++. +.+..+.+.......+..+++
T Consensus 227 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (447)
T d1pw4a_ 227 --YNEKAEQE---LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG 301 (447)
T ss_dssp --------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --hhhccccc---cchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhh
Confidence 00000011 111111122223345566666666666666777888888888664 899999999999999999999
Q ss_pred HHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCcccchhhHHHHHHHHHHHHHhhcccccccccccccc
Q 040949 325 TLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSET 404 (490)
Q Consensus 325 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (490)
.++.|++.||.+|++..........+.......... ....+.+.......+.+.+.. ...+....+..|.
T Consensus 302 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 371 (447)
T d1pw4a_ 302 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---------NPAGNPTVDMICMIVIGFLIY-GPVMLIGLHALEL 371 (447)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---------CCTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHT
T ss_pred hhhhhhhhhhccccccccccchhHHHHHHHHHHHHh---------cccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999876554444333333222222110 012233333444444433332 3344556777899
Q ss_pred CCccchhhHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhHHHHHHH-HHHHHHHHHHHhh
Q 040949 405 FPLETRTAGFAFAVSSNMFF-TFLIAQAFLSMMCHMRAYIFFFFA-GWILVMGLFALFL 461 (490)
Q Consensus 405 ~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 461 (490)
+|++.|+++.|+.+..++++ ...+|.+.|.+.+..|+...+... ++..+..++....
T Consensus 372 ~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 372 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988875 566788999999998866444443 3333433333333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.7e-28 Score=233.36 Aligned_cols=358 Identities=13% Similarity=0.032 Sum_probs=229.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhhhhhhhh
Q 040949 66 CKYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWM----LIIGRILLGIGVGFG 141 (490)
Q Consensus 66 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~~~~ 141 (490)
+|+|.+++|++.+++.+++.++++++|+++||+|||++++++..+..++..+..+.++... .++.+.+.+.+.+..
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccccc
Confidence 4889999999999999999999999999999999999999999999999888888766544 345566666666655
Q ss_pred hhhHHHHhhhcCCC--CccchHHhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHH-HHHhhcccCchhH
Q 040949 142 NEAVPLFLSEIAPV--QHRGAVNILFQLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFL-FIGSIVITETPTS 218 (490)
Q Consensus 142 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~esp~~ 218 (490)
.........+..++ +++.+..+........|..+++.++..... .+|+..+........+. .+..+..+|+|+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp GTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred ccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc---ccccccccchhhHHHHHHHHHHHHhcccccc
Confidence 55555544444432 345567777888888888888888544433 35666666555554444 4455566766531
Q ss_pred HhhcCChHHHHHHHHHhhCchhhHHHHHHHHHHHHHHhhccc---chHHhcccCCCchHHHHHHHHHHHHhhchhhHHHh
Q 040949 219 LIERGNEVAGHKALKKIRGVEDVNAEYEQIKLASDIARQVKH---PFKELMKRSSMPPLIIGVLLQVFQQFTGINAIMFY 295 (490)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
... .++ +++++.+. ...+..+.+..+............ .......
T Consensus 195 ~~~---~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 242 (417)
T d1pv7a_ 195 ATV---ANA-------------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFDQQ 242 (417)
T ss_dssp SCS---SHH-------------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred hhh---hhh-------------------------hhhhcccccccccccccccccccchhhhhHHHHHH----HHhhhcc
Confidence 110 000 00001111 111122221111111212221111 1222222
Q ss_pred HHHHHHHc----CCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCccc
Q 040949 296 APVLFQTV----GFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNTLT 371 (490)
Q Consensus 296 ~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
.+.+.... +.+....+.......++..++..+.+++.||.++|+.+..+..+.+++.+.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-------------- 308 (417)
T d1pv7a_ 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-------------- 308 (417)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc--------------
Confidence 22222222 233445566677778888899999999999999999998888877776665543
Q ss_pred chhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHH-HHHHHHHHHHHHHhHHHHHhhhhHH-HHHHHH
Q 040949 372 TTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAV-SSNMFFTFLIAQAFLSMMCHMRAYI-FFFFAG 449 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 449 (490)
.++.+.......+.+.+.+.. .+....+..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|+.. +++.++
T Consensus 309 ~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~ 387 (417)
T d1pv7a_ 309 ATSALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 234444455555555554433 4555677789999999999999864 5567899999999999999988654 445555
Q ss_pred HHHHHHHHHHhhcccCCCCChHHH
Q 040949 450 WILVMGLFALFLLPETKGVPIDVM 473 (490)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~ 473 (490)
+..+..++..+.+++++..+.++.
T Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~r~ 411 (417)
T d1pv7a_ 388 VALGFTLISVFTLSGPGPLSLLRR 411 (417)
T ss_dssp HHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhcCCCccchhHh
Confidence 555555666666666665555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=4.7e-13 Score=127.22 Aligned_cols=164 Identities=13% Similarity=0.043 Sum_probs=118.4
Q ss_pred hhHHHhHHHHHHHcCCCCchhHHHHHHHhHHHHHHHHhhhhhhcccCchHHHHHhhHHHHHHHHHHHHHHHHhhccccCc
Q 040949 290 NAIMFYAPVLFQTVGFKNDASLLSSVITGTVNVLSTLVSIYAVDKVGRRKLLLQACVQMFISQSTIGGMLLVHLKATSNT 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (490)
..+....|. +++.|+|..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++.+....
T Consensus 42 ~~~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------- 111 (447)
T d1pw4a_ 42 KNFALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--------- 111 (447)
T ss_dssp TSHHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH---------
T ss_pred HHHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccch---------
Confidence 344445564 4567999999999999999999999999999999999999999998888887776665321
Q ss_pred ccchhhHHHHHHHHHHHHHhhccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHhhh-hH-HHHHH
Q 040949 370 LTTTQAGFVVFLVCLFVMAFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNMFFTFLIAQAFLSMMCHMR-AY-IFFFF 447 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 447 (490)
...+.+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+...+..+ +. .+++.
T Consensus 112 -~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~ 189 (447)
T d1pw4a_ 112 -ATSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP 189 (447)
T ss_dssp -HHSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHH
T ss_pred -hhhhHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhh
Confidence 1123334444444544444433 44556677899999999999999999999999999998888777654 33 33444
Q ss_pred HHHHHHHHHHHHhhcccC
Q 040949 448 AGWILVMGLFALFLLPET 465 (490)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (490)
+.+..+..++.+...+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 190 AFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHHCCCS
T ss_pred hhhHHHHHHHHHHhcccc
Confidence 444455555555555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=7.2e-13 Score=124.14 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=127.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 040949 67 KYDNQILQLFTSSLYLAALFASFVASKVCTKFGRKPTILVASSFFLAGAGISSGALNIWMLIIGRILLGIGVGFGNEAVP 146 (490)
Q Consensus 67 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (490)
+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCccchHHhHH-HHHHHHHHHHHHHHHHHhcccCCCchHHHHHhhHHHHHHHHHHhhc-ccC
Q 040949 147 LFLSEIAPVQHRGAVNILF-QLFVTIGIFLANLVNYGTAKLHPHGWRVSLALAGVPAIFLFIGSIV-ITE 214 (490)
Q Consensus 147 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 214 (490)
+++.|.+|+++|+++.+.. +....+|..++|.+ .+...+..||+..|++.+++.++..+...+ +++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 56778999999998 444455578999999988887776555444 443
|