Citrus Sinensis ID: 040956

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080-----

MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHcccccEEEEEEcccEEEEcHHHHHHHHHHHEEEEECcccccccccccccccHHHHHHHHHHcccEEEEEEEcccHHHHHcccccccEEEEEEEEEccccccccccccccccEEEEEEccccccccccCEEEEEEEccccEEEEEEEccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccccccccccHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccEEEcccccccccccEEEccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEECccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEECcccccccccccccccEEEECcccccEEEccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccCEEEEEEEEECcccccccccccEEEEEEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccc

****************************************************************************************************************************************************NV**CN*LANQGCVSCT********************L*RIL********************************************************************TLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS*********SVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA***********************HEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKN******

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
DNA mismatch repair protein MSH7	Involved in post-replicative DNA-mismatch repair.	probable	Q9SMV7

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2O8B, chain B
Confidence level:very confident
Coverage over the Query: 229-968,984-1027
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID	Alignment Graph	Confidence Level	View Alignment and Template
Query
3thw, chain B		confident	Alignment \| Template Structure