Citrus Sinensis ID: 040956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080-----
MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHcccccEEEEEEcccEEEEcHHHHHHHHHHHEEEEEEcccccccccccccccHHHHHHHHHHcccEEEEEEEcccHHHHHcccccccEEEEEEEEEccccccccccccccccEEEEEEccccccccccEEEEEEEEccccEEEEEEEccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccccccccccHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccEEEcccccccccccEEEccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccEEEEEcccccEEEccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccc
ccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccHHHHHHHHccEEcccccccccccHcccccccccccEEEEccccccccccccccccccccccccccccccEEEEccccccccccccccccHccccHcHEEEccccccccccccccccccccEEEcccccccccccHHHHHHHcccccccccHHHHHcccccccccccccEEEccHHHHHHHcHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHccEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccHHcccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHEEHHHHHcccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHccccHEEcccccccHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcEEcccccEEEEEHHHHHccHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEccccHHccccHHHHHHHHHHHHHHccccccEEEEEccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccccccccccccEEEEccccccEEEEEccccccccccEccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccEEccHHHEEEEccccHHcccccccHEHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHccHHHccccEEEEEEEEEccccccEEccccEEEEEEEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHccccHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHcccc
MQRQQSIHSFfqkcspanksgaadmsgarkdsnfttkqrnpvgdssgqptvsatedssleirgtdtppekvprqilpsgfkanegtsggssLFSSIMHKFVKVDARQnankrneqhgnsstvcsvfgktgdleassqqgtaslysekdnvfncnglanqgcvsctemnedvsgpdtpgmhrvVPRLKRILEdnlnigdkknsslldsSKRMRLLQDSVAgvknceeeadttskfewldpskirdanrrrpddplydkrtlyippeALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKItlsgvgkcrqvgisesgIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVnvvtpsttvdgtigpdAVHLLAIkegncgpdngsvvyGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSagsaaleltpamavTDFLDASEVKKLVQlngyfngssspwSKALENVMQHDIGFSALGGLISHLSRLMlddvlrngdilpykvyrdclrmdgqtlyldscvtssgkrllrswichplkdvegiNNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKeghiipslsrifkppifdgsdglDKFLTQFEAaidsdfpdyqnhdvtdldaETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTAsmssgamhrplilpqsknpavrqdnggpvlkikglwhpfalgengglpvpndillgedsddclprtllltgpnmggkstLLRATCLAVILAQLgcfvpcemcvLSLADTIFTRlgatdrimtgeSTFLVECTETASVLQKATQDSLVILDelgrgtstfdGYAIAYAVFRQLVERINCRLLFathyhpltkefashphvtLQHMACAFksnsenyskgdqELVFLYRltsgacpesygLQVAVMAGVPQKVVEAASHAALAMKKSIGesfksseqrsEFSSLHEEWLKTIVNVsrvdcnsddddaYDTLFCLWHELKNSYQLHN
MQRQQSIHSFFQKCSPANKSGAAdmsgarkdsnfttkqrnpvgdssgqptvsatedssleirgtdtppekvprqilPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNAnkrneqhgnsstVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNedvsgpdtpgmhRVVPRLKRIlednlnigdkknsslldsskrMRLLQDsvagvknceeeadttskfewldpskirdanrrrpddplydkrtlyippeALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQvgisesgiddaVEKLVARGYKVGrieqletseqakarhtnsvisrklvnvvtpsttvdgtiGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWIchplkdveginNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASscivlpligkkvlkQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN
MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGdkknsslldsskRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN
**************************************************************************************************************************************************KDNVFNCNGLANQGCVSCT********************L*RIL********************************************************************TLYI***********QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ*************SVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTAS*************************GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA***************************HEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKN******
***QQSI***********************************************************************************************************************************************************************************************************************************************************TLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS**********VISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK*******MDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM**********SRIFKPPIFDGSDGLDKFLTQFEAAIDSD***YQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA******************************IVNVSRVDCNSDDDDAYDTLFCLWHEL*N******
**********FQKCS****************SNFTTK**********************EIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNA***********TVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG**************LHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN
***********QK****************************************************TPPEKVPRQILPSGFKA*****GGSSLFSSI**KFVKVDA****************VCSVFGKTGDLEASSQQ**********NV**CN*LANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQA****TNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI**********S*FSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1085 2.2.26 [Sep-21-2011]
Q9SMV71109 DNA mismatch repair prote yes no 0.984 0.963 0.628 0.0
P527011360 DNA mismatch repair prote yes no 0.259 0.207 0.442 4e-66
O047161324 DNA mismatch repair prote no no 0.303 0.248 0.406 6e-64
P542761358 DNA mismatch repair prote yes no 0.259 0.207 0.437 1e-63
Q0AEI7880 DNA mismatch repair prote yes no 0.658 0.812 0.275 8e-63
Q55GU91260 DNA mismatch repair prote yes no 0.263 0.226 0.417 2e-61
O745021254 DNA mismatch repair prote yes no 0.441 0.381 0.310 3e-59
Q9VUM01190 Probable DNA mismatch rep yes no 0.258 0.235 0.422 5e-57
Q1ZXH01428 DNA mismatch repair prote no no 0.281 0.213 0.392 8e-55
Q67NK1875 DNA mismatch repair prote yes no 0.260 0.323 0.402 1e-53
>sp|Q9SMV7|MSH7_ARATH DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana GN=MSH7 PE=1 SV=1 Back     alignment and function desciption
 Score = 1398 bits (3618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/1118 (62%), Positives = 859/1118 (76%), Gaps = 50/1118 (4%)

Query: 1    MQRQQSIHSFFQKCSPANKSG-----AADMSGARKDSNFTTKQRNPVGDSSGQPTVSATE 55
            MQRQ+SI SFFQK + A   G     AA   G      F  K+ +  GD+S +  VS + 
Sbjct: 1    MQRQRSILSFFQKPTAATTKGLVSGDAASGGGGSGGPRFNVKEGDAKGDASVRFAVSKSV 60

Query: 56   DSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQ 115
            D   E+RGTDTPPEKVPR++LPSGFK  E     SSLFS+IMHKFVKVD R  + +R+ +
Sbjct: 61   D---EVRGTDTPPEKVPRRVLPSGFKPAESAGDASSLFSNIMHKFVKVDDRDCSGERSRE 117

Query: 116  HG---NSSTVCSVFGKTGDL--EASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNED 170
                 N S++C    K  D+  +  S  G      E+++ F+ +G A    V    ++ D
Sbjct: 118  DVVPLNDSSLCM---KANDVIPQFRSNNGKTQ---ERNHAFSFSGRAELRSVEDIGVDGD 171

Query: 171  VSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADT 230
            V GP+TPGM     RLKR+LED +   + K   +LDS+KR+++LQD V G K   +E + 
Sbjct: 172  VPGPETPGMRPRASRLKRVLEDEMTFKEDK-VPVLDSNKRLKMLQDPVCGEK---KEVNE 227

Query: 231  TSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLF 290
             +KFEWL+ S+IRDANRRRPDDPLYD++TL+IPP+  KKMSASQKQYW+VKS+YMD++LF
Sbjct: 228  GTKFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLF 287

Query: 291  FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
            FKVGKFYELYELDAE+GHKELDWK+T+SGVGKCRQVGISESGID+AV+KL+ARGYKVGRI
Sbjct: 288  FKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRI 347

Query: 351  EQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVY 410
            EQLETS+QAKAR  N++I RKLV V+TPST  +G IGPDAVHLLAIKE        S VY
Sbjct: 348  EQLETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELQKCSTVY 407

Query: 411  GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AG 469
            GFAFVDCAALR WVG+I+DDASCAALGALLMQVSPKEV+Y+++GL +EAQKALRK++  G
Sbjct: 408  GFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTG 467

Query: 470  SAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS 529
            S A++L P   V    DA+ V+ +++ NGYF GSS  W+ A++ + + D+  SALG LI+
Sbjct: 468  STAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALGELIN 527

Query: 530  HLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVT 569
            HLSRL L+DVL++GDI PY+VYR CLR+DGQT+                    YLD+CV+
Sbjct: 528  HLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLDNCVS 587

Query: 570  SSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
             +GKRLLR+WICHPLKDVE IN RLDVVE    NSE + +  QYL KLPDLERLLGR+K+
Sbjct: 588  PTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLGRIKS 647

Query: 630  RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPI 689
             V++S+ ++  L+GKKVLKQ+VK FG +VKG R  +DLL+ + KE +++  L ++ K PI
Sbjct: 648  SVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLYKLCKLPI 707

Query: 690  FDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAIS 749
              G  GL+ FL+QFEAAIDSDFP+YQN DVTD +AETL+ILIELFIE+A+QWSEVIH IS
Sbjct: 708  LVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWSEVIHTIS 767

Query: 750  CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP 809
            C+DVLRSFA+ AS+S+G+M RP+I P+S+     Q   GP+LKI+GLWHPFA+  +G LP
Sbjct: 768  CLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLP 827

Query: 810  VPNDILLGE---DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
            VPNDILLGE    S    PR+LLLTGPNMGGKSTLLRATCLAVI AQLGC+VPCE C +S
Sbjct: 828  VPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEIS 887

Query: 867  LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
            L DTIFTRLGA+DRIMTGESTFLVECTETASVLQ ATQDSLVILDELGRGTSTFDGYAIA
Sbjct: 888  LVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIA 947

Query: 927  YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG-DQELVF 985
            Y+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+   +G DQ+LVF
Sbjct: 948  YSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVF 1007

Query: 986  LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
            LYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RSEFSSLHE
Sbjct: 1008 LYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHE 1067

Query: 1046 EWLKTIVNVSRVDCNSD--DDDAYDTLFCLWHELKNSY 1081
            +WLK++V +SRV  N+    +D YDTLFCLWHE+K+SY
Sbjct: 1068 DWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
Involved in post-replicative DNA-mismatch repair.
Arabidopsis thaliana (taxid: 3702)
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2 Back     alignment and function description
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1 SV=2 Back     alignment and function description
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3 Back     alignment and function description
>sp|Q0AEI7|MUTS_NITEC DNA mismatch repair protein MutS OS=Nitrosomonas eutropha (strain C91) GN=mutS PE=3 SV=1 Back     alignment and function description
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6 PE=3 SV=1 Back     alignment and function description
>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msh6 PE=1 SV=1 Back     alignment and function description
>sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster GN=Msh6 PE=1 SV=2 Back     alignment and function description
>sp|Q1ZXH0|MSH3_DICDI DNA mismatch repair protein Msh3 OS=Dictyostelium discoideum GN=msh3 PE=3 SV=1 Back     alignment and function description
>sp|Q67NK1|MUTS_SYMTH DNA mismatch repair protein MutS OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=mutS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1085
2241197721107 predicted protein [Populus trichocarpa] 0.987 0.967 0.715 0.0
2555465451089 DNA mismatch repair protein MSH6-2, puta 0.979 0.976 0.695 0.0
2254452801122 PREDICTED: DNA mismatch repair protein M 0.994 0.961 0.686 0.0
2977388431126 unnamed protein product [Vitis vinifera] 0.994 0.958 0.684 0.0
4495210801095 PREDICTED: LOW QUALITY PROTEIN: DNA mism 0.970 0.961 0.660 0.0
4494433251095 PREDICTED: DNA mismatch repair protein M 0.970 0.961 0.660 0.0
1478528301090 hypothetical protein VITISV_034626 [Viti 0.953 0.949 0.647 0.0
306875141109 DNA mismatch repair protein Msh6-2 [Arab 0.984 0.963 0.628 0.0
62249171109 MutS homolog 7 [Arabidopsis thaliana] 0.984 0.963 0.627 0.0
2978355381119 hypothetical protein ARALYDRAFT_479958 [ 0.980 0.950 0.617 0.0
>gi|224119772|ref|XP_002331157.1| predicted protein [Populus trichocarpa] gi|222873240|gb|EEF10371.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1573 bits (4072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1103 (71%), Positives = 892/1103 (80%), Gaps = 32/1103 (2%)

Query: 1    MQRQQSIHSFFQKCS-PANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSL 59
            M RQ+SI SFFQK S P+  S A + +  R+   F+ KQ N    +  QP +    DSS+
Sbjct: 1    MPRQKSILSFFQKPSQPSQSSDAGERTDGRQAPLFSAKQHN---QNVSQPAIHGPVDSSI 57

Query: 60   EIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNS 119
            EIRGTDTPPEKVPRQILP   K NE  +  +SLFSSIMHKFVKVD R+  N RN+ H  S
Sbjct: 58   EIRGTDTPPEKVPRQILPVNIKENE-EAKVASLFSSIMHKFVKVDDREKPNGRNQVH--S 114

Query: 120  STVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGM 179
            + VCS        +   Q G  +LYSEKDN F+ +G+ +Q  V   E   DV GP TPGM
Sbjct: 115  ANVCSTSVTFTIPKELPQHGMDTLYSEKDNGFSSSGMVDQTSVLNIESVNDVPGPHTPGM 174

Query: 180  HRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDP 239
              +VPRLKRILED     DK   S L+SSKR++ LQD  + +KN EE +++TSKFEWLDP
Sbjct: 175  RPLVPRLKRILEDVPKFEDKNGCSFLNSSKRVKPLQDPASLIKNHEEISNSTSKFEWLDP 234

Query: 240  SKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYEL 299
            ++IRDANRRRP+DPLYDK+TLY+PP+ALKKMSASQKQYW VKSQYMDVLLFFKVGKFYEL
Sbjct: 235  AQIRDANRRRPNDPLYDKKTLYLPPDALKKMSASQKQYWTVKSQYMDVLLFFKVGKFYEL 294

Query: 300  YELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQA 359
            YELDAEIGHKELDWK+TLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR+EQLETS+QA
Sbjct: 295  YELDAEIGHKELDWKMTLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRVEQLETSDQA 354

Query: 360  KARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
            K+R  NSVI RKLV VVTPSTT    +GPDAVHLLAIKEGN G DNG+  YGFAFVDCAA
Sbjct: 355  KSRGANSVIQRKLVQVVTPSTTTGHNMGPDAVHLLAIKEGNYGVDNGATAYGFAFVDCAA 414

Query: 420  LRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AGSAALELTPA 478
            LRVWVG+INDDAS AALGALLMQ+SPKEVIYENR L + AQK LRK+S  GS AL+L+P 
Sbjct: 415  LRVWVGSINDDASHAALGALLMQISPKEVIYENRELSRGAQKELRKYSLIGSTALQLSPV 474

Query: 479  MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD 538
            +  TDF+DASEVK L+Q   YF  S++PW+ AL+++M  DI   ALGGLI HLSRLM DD
Sbjct: 475  LPGTDFVDASEVKNLIQSKDYFKWSTNPWNHALDSIMHQDISLCALGGLIGHLSRLMFDD 534

Query: 539  VLRNGDILPYKVYRDCLRMDGQTL----------------------YLDSCVTSSGKRLL 576
            VLRN DILPY+VY+ CLRMDGQTL                      YLD+CVTSSGKRLL
Sbjct: 535  VLRNADILPYQVYKGCLRMDGQTLVNLEVFSNSADGGSSGQCTLFNYLDNCVTSSGKRLL 594

Query: 577  RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC 636
            R+WICHPLK VEGINNRLDV+E LM  SE+++V+AQYLRKLPDLER+LGRVK   QAS  
Sbjct: 595  RNWICHPLKHVEGINNRLDVIENLMARSEIMLVIAQYLRKLPDLERMLGRVKVSFQASGS 654

Query: 637  IVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGL 696
            + LPLI KK+LKQ+VKVFGSLVKGLR  MDLL+L+ KE  +I SLS+ FK P   GS+GL
Sbjct: 655  LALPLISKKMLKQRVKVFGSLVKGLRNGMDLLLLLLKEEQLISSLSKNFKLPELLGSNGL 714

Query: 697  DKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRS 756
            +KFL QFEAA+DS+FP+YQN DVTD +A  LS+LIELFIEKA+QW EVIHAI+CIDVLRS
Sbjct: 715  EKFLVQFEAAVDSEFPNYQNRDVTDSEAGMLSVLIELFIEKAAQWGEVIHAINCIDVLRS 774

Query: 757  FAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL 816
            FAVTASMS GAM RP+ILP SK+ +  +  GGPVLKIKGLWHPFALGEN GLPVPND+ L
Sbjct: 775  FAVTASMSCGAMCRPVILPDSKSISFCEGEGGPVLKIKGLWHPFALGEN-GLPVPNDVFL 833

Query: 817  GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
            GEDSD   PRT+LLTGPNMGGKSTLLRATCLAVILAQLGCFVP E CVLSLAD IFTRLG
Sbjct: 834  GEDSDSQHPRTVLLTGPNMGGKSTLLRATCLAVILAQLGCFVPGEKCVLSLADIIFTRLG 893

Query: 877  ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
            ATDRIMTGESTF +ECTETASVLQ ATQDSLV+LDELGRGTST+DGYAIAYAVFR LVE+
Sbjct: 894  ATDRIMTGESTFFIECTETASVLQNATQDSLVLLDELGRGTSTYDGYAIAYAVFRHLVEK 953

Query: 937  INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
            INCRLLFATHYHPLTKEFASHPHV+LQ+MACAFKS  E+YSK D++LVFLYRL SGACP 
Sbjct: 954  INCRLLFATHYHPLTKEFASHPHVSLQYMACAFKSKPESYSKSDRDLVFLYRLASGACPG 1013

Query: 997  SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSR 1056
            SYGLQVA MAG+P+ VVEAASHA   MK S GESFKSSE+RSEFS+LHEEWLKT+VNVSR
Sbjct: 1014 SYGLQVATMAGIPEHVVEAASHAGQLMKNSTGESFKSSERRSEFSTLHEEWLKTLVNVSR 1073

Query: 1057 V-DCNSDDDDAYDTLFCLWHELK 1078
            + DCN DDDD YDTLFCLWHELK
Sbjct: 1074 IRDCNFDDDDVYDTLFCLWHELK 1096

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546545|ref|XP_002514332.1| DNA mismatch repair protein MSH6-2, putative [Ricinus communis] gi|223546788|gb|EEF48286.1| DNA mismatch repair protein MSH6-2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225445280|ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738843|emb|CBI28088.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449521080|ref|XP_004167559.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443325|ref|XP_004139430.1| PREDICTED: DNA mismatch repair protein MSH7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147852830|emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30687514|ref|NP_850630.1| DNA mismatch repair protein Msh6-2 [Arabidopsis thaliana] gi|12643849|sp|Q9SMV7.1|MSH7_ARATH RecName: Full=DNA mismatch repair protein MSH7; Short=AtMSH7; AltName: Full=MutS protein homolog 7 gi|3757550|emb|CAA07685.1| Msh6-2 protein [Arabidopsis thaliana] gi|9294039|dbj|BAB01996.1| DNA repair protein MutS [Arabidopsis thaliana] gi|332643383|gb|AEE76904.1| DNA mismatch repair protein Msh6-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6224917|gb|AAF06013.1|AF193018_1 MutS homolog 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297835538|ref|XP_002885651.1| hypothetical protein ARALYDRAFT_479958 [Arabidopsis lyrata subsp. lyrata] gi|297331491|gb|EFH61910.1| hypothetical protein ARALYDRAFT_479958 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1085
TAIR|locus:10057165291109 MSH7 "AT3G24495" [Arabidopsis 0.478 0.467 0.704 0.0
UNIPROTKB|Q5VR411224 OJ1174_D05.15 "Os01g0180600 pr 0.823 0.729 0.587 2.8e-286
TAIR|locus:21322331324 MSH6 "AT4G02070" [Arabidopsis 0.378 0.310 0.362 2.3e-108
RGD|23223111361 Msh6 "mutS homolog 6 (E. coli) 0.256 0.204 0.446 3.4e-106
UNIPROTKB|E1BYJ21341 MSH6 "Uncharacterized protein" 0.270 0.219 0.453 5.9e-106
UNIPROTKB|E1BWV71357 MSH6 "Uncharacterized protein" 0.270 0.216 0.453 6.6e-106
UNIPROTKB|E1B9Q41360 MSH6 "Uncharacterized protein" 0.259 0.207 0.444 4e-105
MGI|MGI:13439611358 Msh6 "mutS homolog 6 (E. coli) 0.255 0.203 0.445 8.3e-105
POMBASE|SPCC285.16c1254 msh6 "MutS protein homolog" [S 0.258 0.224 0.417 3.3e-104
UNIPROTKB|B4DF411230 MSH6 "DNA mismatch repair prot 0.259 0.229 0.442 5.8e-104
TAIR|locus:1005716529 MSH7 "AT3G24495" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1924 (682.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 370/525 (70%), Positives = 438/525 (83%)

Query:   563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
             YLD+CV+ +GKRLLR+WICHPLKDVE IN RLDVVE    NSE + +  QYL KLPDLER
Sbjct:   581 YLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLER 640

Query:   623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
             LLGR+K+ V++S+ ++  L+GKKVLKQ+VK FG +VKG R  +DLL+ + KE +++  L 
Sbjct:   641 LLGRIKSSVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLY 700

Query:   683 RIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWS 742
             ++ K PI  G  GL+ FL+QFEAAIDSDFP+YQN DVTD +AETL+ILIELFIE+A+QWS
Sbjct:   701 KLCKLPILVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWS 760

Query:   743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
             EVIH ISC+DVLRSFA+ AS+S+G+M RP+I P+S+     Q   GP+LKI+GLWHPFA+
Sbjct:   761 EVIHTISCLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAV 820

Query:   803 GENGGLPVPNDILLGE---DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
               +G LPVPNDILLGE    S    PR+LLLTGPNMGGKSTLLRATCLAVI AQLGC+VP
Sbjct:   821 AADGQLPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVP 880

Query:   860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
             CE C +SL DTIFTRLGA+DRIMTGESTFLVECTETASVLQ ATQDSLVILDELGRGTST
Sbjct:   881 CESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTST 940

Query:   920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
             FDGYAIAY+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+   +G
Sbjct:   941 FDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRG 1000

Query:   980 -DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRS 1038
              DQ+LVFLYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RS
Sbjct:  1001 CDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRS 1060

Query:  1039 EFSSLHEEWLKTIVNVSRVDCNSDD--DDAYDTLFCLWHELKNSY 1081
             EFSSLHE+WLK++V +SRV  N+    +D YDTLFCLWHE+K+SY
Sbjct:  1061 EFSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
GO:0000228 "nuclear chromosome" evidence=IBA
GO:0000400 "four-way junction DNA binding" evidence=IBA
GO:0000710 "meiotic mismatch repair" evidence=IBA
GO:0003684 "damaged DNA binding" evidence=ISS;IBA
GO:0005524 "ATP binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006200 "ATP catabolic process" evidence=IBA
GO:0006298 "mismatch repair" evidence=IEA;ISS
GO:0007131 "reciprocal meiotic recombination" evidence=RCA;IBA
GO:0008094 "DNA-dependent ATPase activity" evidence=IBA
GO:0009411 "response to UV" evidence=IBA
GO:0032137 "guanine/thymine mispair binding" evidence=IBA
GO:0032138 "single base insertion or deletion binding" evidence=IBA
GO:0032301 "MutSalpha complex" evidence=IBA
GO:0043570 "maintenance of DNA repeat elements" evidence=IBA
GO:0045910 "negative regulation of DNA recombination" evidence=IBA
GO:0005515 "protein binding" evidence=IPI
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|Q5VR41 OJ1174_D05.15 "Os01g0180600 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2132233 MSH6 "AT4G02070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|2322311 Msh6 "mutS homolog 6 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYJ2 MSH6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWV7 MSH6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9Q4 MSH6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1343961 Msh6 "mutS homolog 6 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPCC285.16c msh6 "MutS protein homolog" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|B4DF41 MSH6 "DNA mismatch repair protein Msh6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SMV7MSH7_ARATHNo assigned EC number0.62880.98430.9630yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.157.33.1
hypothetical protein (1099 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIX.1944.1
annotation not avaliable (727 aa)
• • • • 0.659
fgenesh4_pg.C_scaffold_15289000001
Predicted protein (322 aa)
  •     0.506
eugene3.00120511
hypothetical protein (944 aa)
  ••• ••0.455
eugene3.07100002
annotation not avaliable (68 aa)
  •     0.447

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1085
cd03286218 cd03286, ABC_MSH6_euk, ATP-binding cassette domain 1e-115
pfam00488235 pfam00488, MutS_V, MutS domain V 1e-107
smart00534185 smart00534, MUTSac, ATPase domain of DNA mismatch 7e-88
COG0249843 COG0249, MutS, Mismatch repair ATPase (MutS family 1e-82
PRK05399854 PRK05399, PRK05399, DNA mismatch repair protein Mu 2e-80
cd03243202 cd03243, ABC_MutS_homologs, ATP-binding cassette d 8e-78
cd03284216 cd03284, ABC_MutS1, ATP-binding cassette domain of 1e-73
cd03285222 cd03285, ABC_MSH2_euk, ATP-binding cassette domain 1e-65
TIGR01070840 TIGR01070, mutS1, DNA mismatch repair protein MutS 6e-61
cd03287222 cd03287, ABC_MSH3_euk, ATP-binding cassette domain 9e-61
COG0249843 COG0249, MutS, Mismatch repair ATPase (MutS family 3e-55
PRK05399854 PRK05399, PRK05399, DNA mismatch repair protein Mu 8e-47
cd03281213 cd03281, ABC_MSH5_euk, ATP-binding cassette domain 1e-42
cd03282204 cd03282, ABC_MSH4_euk, ATP-binding cassette domain 3e-39
pfam01624113 pfam01624, MutS_I, MutS domain I 2e-37
TIGR01070840 TIGR01070, mutS1, DNA mismatch repair protein MutS 6e-33
cd03280200 cd03280, ABC_MutS2, ATP-binding cassette domain of 2e-31
cd03227162 cd03227, ABC_Class2, ATP-binding cassette domain o 1e-30
smart00533308 smart00533, MUTSd, DNA-binding domain of DNA misma 2e-29
cd03283199 cd03283, ABC_MutS-like, ATP-binding cassette domai 1e-28
TIGR01069 771 TIGR01069, mutS2, MutS2 family protein 2e-23
pfam05192290 pfam05192, MutS_III, MutS domain III 1e-20
COG1193 753 COG1193, COG1193, Mismatch repair ATPase (MutS fam 1e-18
PRK00409 782 PRK00409, PRK00409, recombination and DNA strand e 1e-16
cd00267157 cd00267, ABC_ATPase, ATP-binding cassette transpor 8e-09
pfam05188133 pfam05188, MutS_II, MutS domain II 3e-08
>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog Back     alignment and domain information 
 Score =  354 bits (910), Expect = e-115
 Identities = 129/225 (57%), Positives = 156/225 (69%), Gaps = 7/225 (3%)

Query: 792  KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
              + L HP          VPND+ LG  S    PR L+LTGPNMGGKSTLLR  CLAVI+
Sbjct: 1    CFEELRHPCLNASTASSFVPNDVDLGATS----PRILVLTGPNMGGKSTLLRTVCLAVIM 56

Query: 852  AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
            AQ+G  VP +   LSL D IFTR+GA D IM GESTF+VE +ETA++L+ AT DSLVILD
Sbjct: 57   AQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILD 116

Query: 912  ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
            ELGRGTST DGYAIA+AV   LV+++ C  LF+THYH L  EF  H  V L HMACA K+
Sbjct: 117  ELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVKN 176

Query: 972  NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
             S+      +++ FLY+L +G CP+SYGL VA+MAG+P  VVE A
Sbjct: 177  ESDP---TIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 218
>gnl|CDD|215944 pfam00488, MutS_V, MutS domain V Back     alignment and domain information
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional Back     alignment and domain information
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs Back     alignment and domain information
>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog Back     alignment and domain information
>gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog Back     alignment and domain information
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS Back     alignment and domain information
>gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog Back     alignment and domain information
>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional Back     alignment and domain information
>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog Back     alignment and domain information
>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog Back     alignment and domain information
>gnl|CDD|216613 pfam01624, MutS_I, MutS domain I Back     alignment and domain information
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS Back     alignment and domain information
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2 Back     alignment and domain information
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins Back     alignment and domain information
>gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS family Back     alignment and domain information
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|218489 pfam05192, MutS_III, MutS domain III Back     alignment and domain information
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|218486 pfam05188, MutS_II, MutS domain II Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1085
KOG02171125 consensus Mismatch repair ATPase MSH6 (MutS family 100.0
COG0249843 MutS Mismatch repair ATPase (MutS family) [DNA rep 100.0
TIGR01070840 mutS1 DNA mismatch repair protein MutS. 100.0
PRK05399854 DNA mismatch repair protein MutS; Provisional 100.0
KOG02181070 consensus Mismatch repair MSH3 [Replication, recom 100.0
KOG0219902 consensus Mismatch repair ATPase MSH2 (MutS family 100.0
KOG0220867 consensus Mismatch repair ATPase MSH4 (MutS family 100.0
KOG0221849 consensus Mismatch repair ATPase MSH5 (MutS family 100.0
PRK00409 782 recombination and DNA strand exchange inhibitor pr 100.0
PF00488235 MutS_V: MutS domain V C-terminus.; InterPro: IPR00 100.0
TIGR01069 771 mutS2 MutS2 family protein. Function of MutS2 is u 100.0
cd03286218 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS 100.0
cd03287222 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS 100.0
cd03285222 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS 100.0
cd03284216 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr 100.0
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 100.0
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 100.0
smart00534185 MUTSac ATPase domain of DNA mismatch repair MUTS f 100.0
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 100.0
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 100.0
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 100.0
PF01624113 MutS_I: MutS domain I C-terminus.; InterPro: IPR00 99.97
COG1193 753 Mismatch repair ATPase (MutS family) [DNA replicat 99.97
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 99.84
cd03227162 ABC_Class2 ABC-type Class 2 contains systems invol 99.83
smart00533308 MUTSd DNA-binding domain of DNA mismatch repair MU 99.79
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 99.76
COG1131293 CcmA ABC-type multidrug transport system, ATPase c 99.76
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 99.76
COG1126240 GlnQ ABC-type polar amino acid transport system, A 99.75
COG4152300 ABC-type uncharacterized transport system, ATPase 99.74
PRK13537306 nodulation ABC transporter NodI; Provisional 99.73
COG1127263 Ttg2A ABC-type transport system involved in resist 99.72
PRK13536340 nodulation factor exporter subunit NodI; Provision 99.72
COG1136226 SalX ABC-type antimicrobial peptide transport syst 99.69
PRK11247257 ssuB aliphatic sulfonates transport ATP-binding su 99.69
TIGR01288303 nodI ATP-binding ABC transporter family nodulation 99.69
cd03265220 ABC_DrrA DrrA is the ATP-binding protein component 99.69
cd03259213 ABC_Carb_Solutes_like ABC Carbohydrate and Solute 99.69
PF05192204 MutS_III: MutS domain III C-terminus.; InterPro: I 99.69
cd03293220 ABC_NrtD_SsuB_transporters NrtD and SsuB are the A 99.69
cd03261235 ABC_Org_Solvent_Resistant ABC (ATP-binding cassett 99.69
COG0411250 LivG ABC-type branched-chain amino acid transport 99.68
TIGR00960216 3a0501s02 Type II (General) Secretory Pathway (IIS 99.68
TIGR02315243 ABC_phnC phosphonate ABC transporter, ATP-binding 99.68
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 99.68
cd03215182 ABC_Carb_Monos_II This family represents domain II 99.68
cd03258233 ABC_MetN_methionine_transporter MetN (also known a 99.68
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 99.68
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 99.68
cd03301213 ABC_MalK_N The N-terminal ATPase domain of the mal 99.67
cd03268208 ABC_BcrA_bacitracin_resist The BcrA subfamily repr 99.67
COG1125309 OpuBA ABC-type proline/glycine betaine transport s 99.67
COG4555245 NatA ABC-type Na+ transport system, ATPase compone 99.67
cd03225211 ABC_cobalt_CbiO_domain1 Domain I of the ABC compon 99.67
cd03266218 ABC_NatA_sodium_exporter NatA is the ATPase compon 99.67
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 99.67
PRK11629233 lolD lipoprotein transporter ATP-binding subunit; 99.67
PRK11264250 putative amino-acid ABC transporter ATP-binding pr 99.67
COG1118345 CysA ABC-type sulfate/molybdate transport systems, 99.67
cd03262213 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- 99.67
PRK11248255 tauB taurine transporter ATP-binding subunit; Prov 99.67
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 99.67
PRK09544251 znuC high-affinity zinc transporter ATPase; Review 99.67
cd03235213 ABC_Metallic_Cations ABC component of the metal-ty 99.67
cd03269210 ABC_putative_ATPase This subfamily is involved in 99.66
cd03296239 ABC_CysA_sulfate_importer Part of the ABC transpor 99.66
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 99.66
PRK11432351 fbpC ferric transporter ATP-binding subunit; Provi 99.66
TIGR03265353 PhnT2 putative 2-aminoethylphosphonate ABC transpo 99.66
cd03256241 ABC_PhnC_transporter ABC-type phosphate/phosphonat 99.66
cd03219236 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans 99.66
COG3842352 PotA ABC-type spermidine/putrescine transport syst 99.66
PRK10247225 putative ABC transporter ATP-binding protein YbbL; 99.66
cd03218232 ABC_YhbG The ABC transporters belonging to the Yhb 99.66
PRK11831269 putative ABC transporter ATP-binding protein YrbF; 99.66
PRK11000369 maltose/maltodextrin transporter ATP-binding prote 99.66
PRK13543214 cytochrome c biogenesis protein CcmA; Provisional 99.66
TIGR01188302 drrA daunorubicin resistance ABC transporter ATP-b 99.66
PRK09536402 btuD corrinoid ABC transporter ATPase; Reviewed 99.66
PRK10575265 iron-hydroxamate transporter ATP-binding subunit; 99.66
TIGR03864236 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, 99.66
cd03216163 ABC_Carb_Monos_I This family represents the domain 99.65
PRK11153343 metN DL-methionine transporter ATP-binding subunit 99.65
cd03292214 ABC_FtsE_transporter FtsE is a hydrophilic nucleot 99.65
PRK11650356 ugpC glycerol-3-phosphate transporter ATP-binding 99.65
PRK13647274 cbiO cobalt transporter ATP-binding subunit; Provi 99.65
PRK13637287 cbiO cobalt transporter ATP-binding subunit; Provi 99.65
PRK13638271 cbiO cobalt transporter ATP-binding subunit; Provi 99.65
PRK09452375 potA putrescine/spermidine ABC transporter ATPase 99.65
TIGR03258362 PhnT 2-aminoethylphosphonate ABC transport system, 99.65
PRK09984262 phosphonate/organophosphate ester transporter subu 99.65
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 99.65
PRK10851353 sulfate/thiosulfate transporter subunit; Provision 99.65
cd03246173 ABCC_Protease_Secretion This family represents the 99.65
PRK11300255 livG leucine/isoleucine/valine transporter ATP-bin 99.64
PRK10895241 lipopolysaccharide ABC transporter ATP-binding pro 99.64
PRK13652277 cbiO cobalt transporter ATP-binding subunit; Provi 99.64
TIGR02314343 ABC_MetN D-methionine ABC transporter, ATP-binding 99.64
TIGR03410230 urea_trans_UrtE urea ABC transporter, ATP-binding 99.64
PRK14250241 phosphate ABC transporter ATP-binding protein; Pro 99.64
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 99.64
PRK11614237 livF leucine/isoleucine/valine transporter ATP-bin 99.64
PRK10253265 iron-enterobactin transporter ATP-binding protein; 99.64
cd03224222 ABC_TM1139_LivF_branched LivF (TM1139) is part of 99.64
COG2884223 FtsE Predicted ATPase involved in cell division [C 99.64
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 99.64
cd03257228 ABC_NikE_OppD_transporters The ABC transporter sub 99.64
PRK09493240 glnQ glutamine ABC transporter ATP-binding protein 99.64
PRK10584228 putative ABC transporter ATP-binding protein YbbA; 99.64
cd03232192 ABC_PDR_domain2 The pleiotropic drug resistance-li 99.64
cd03295242 ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin 99.64
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 99.64
COG1119257 ModF ABC-type molybdenum transport system, ATPase 99.64
TIGR02211221 LolD_lipo_ex lipoprotein releasing system, ATP-bin 99.64
PRK13651305 cobalt transporter ATP-binding subunit; Provisiona 99.64
PRK13646286 cbiO cobalt transporter ATP-binding subunit; Provi 99.64
PRK11607377 potG putrescine transporter ATP-binding subunit; P 99.64
PRK14268258 phosphate ABC transporter ATP-binding protein; Pro 99.64
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 99.64
PRK13636283 cbiO cobalt transporter ATP-binding subunit; Provi 99.63
PRK10908222 cell division protein FtsE; Provisional 99.63
PRK13538204 cytochrome c biogenesis protein CcmA; Provisional 99.63
TIGR03411242 urea_trans_UrtD urea ABC transporter, ATP-binding 99.63
COG1122235 CbiO ABC-type cobalt transport system, ATPase comp 99.63
cd03260227 ABC_PstB_phosphate_transporter Phosphate uptake is 99.63
PRK10419268 nikE nickel transporter ATP-binding protein NikE; 99.63
PRK13635279 cbiO cobalt transporter ATP-binding subunit; Provi 99.63
PRK10619257 histidine/lysine/arginine/ornithine transporter su 99.63
PRK13631320 cbiO cobalt transporter ATP-binding subunit; Provi 99.63
PRK11231255 fecE iron-dicitrate transporter ATP-binding subuni 99.63
PRK13634290 cbiO cobalt transporter ATP-binding subunit; Provi 99.63
PRK14242253 phosphate transporter ATP-binding protein; Provisi 99.63
cd03231201 ABC_CcmA_heme_exporter CcmA, the ATP-binding compo 99.63
TIGR00968237 3a0106s01 sulfate ABC transporter, ATP-binding pro 99.63
PRK13641287 cbiO cobalt transporter ATP-binding subunit; Provi 99.63
cd03217200 ABC_FeS_Assembly ABC-type transport system involve 99.63
TIGR02769265 nickel_nikE nickel import ATP-binding protein NikE 99.63
PRK13648269 cbiO cobalt transporter ATP-binding subunit; Provi 99.63
PRK13548258 hmuV hemin importer ATP-binding subunit; Provision 99.62
PRK15112267 antimicrobial peptide ABC system ATP-binding prote 99.62
PRK11124242 artP arginine transporter ATP-binding subunit; Pro 99.62
TIGR03005252 ectoine_ehuA ectoine/hydroxyectoine ABC transporte 99.62
COG3638258 ABC-type phosphate/phosphonate transport system, A 99.62
PRK15079331 oligopeptide ABC transporter ATP-binding protein O 99.62
TIGR03740223 galliderm_ABC gallidermin-class lantibiotic protec 99.62
PRK14275286 phosphate ABC transporter ATP-binding protein; Pro 99.62
TIGR01978243 sufC FeS assembly ATPase SufC. SufC is part of the 99.62
PRK13632271 cbiO cobalt transporter ATP-binding subunit; Provi 99.62
PRK14259269 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK14248268 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK14245250 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK13643288 cbiO cobalt transporter ATP-binding subunit; Provi 99.62
cd03264211 ABC_drug_resistance_like ABC-type multidrug transp 99.62
PRK14273254 phosphate ABC transporter ATP-binding protein; Pro 99.62
PRK13540200 cytochrome c biogenesis protein CcmA; Provisional 99.62
PRK13633280 cobalt transporter ATP-binding subunit; Provisiona 99.61
PRK15439 510 autoinducer 2 ABC transporter ATP-binding protein 99.61
TIGR02323253 CP_lyasePhnK phosphonate C-P lyase system protein 99.61
PRK13644274 cbiO cobalt transporter ATP-binding subunit; Provi 99.61
PRK14274259 phosphate ABC transporter ATP-binding protein; Pro 99.61
cd03250204 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. 99.61
cd03300232 ABC_PotA_N PotA is an ABC-type transporter and the 99.61
PRK13539207 cytochrome c biogenesis protein CcmA; Provisional 99.61
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 99.61
TIGR03873256 F420-0_ABC_ATP proposed F420-0 ABC transporter, AT 99.61
COG0410237 LivF ABC-type branched-chain amino acid transport 99.61
PRK11701258 phnK phosphonate C-P lyase system protein PhnK; Pr 99.61
PRK10938 490 putative molybdenum transport ATP-binding protein 99.61
PRK13650279 cbiO cobalt transporter ATP-binding subunit; Provi 99.61
cd03294269 ABC_Pro_Gly_Bertaine This family comprises the gly 99.61
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 99.61
PRK15093330 antimicrobial peptide ABC transporter ATP-binding 99.61
PRK15056272 manganese/iron transporter ATP-binding protein; Pr 99.61
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 99.61
PRK10744260 pstB phosphate transporter ATP-binding protein; Pr 99.61
cd03298211 ABC_ThiQ_thiamine_transporter ABC-type thiamine tr 99.61
TIGR01166190 cbiO cobalt transport protein ATP-binding subunit. 99.61
TIGR03608206 L_ocin_972_ABC putative bacteriocin export ABC tra 99.61
COG1137243 YhbG ABC-type (unclassified) transport system, ATP 99.61
PRK13649280 cbiO cobalt transporter ATP-binding subunit; Provi 99.61
PRK11308327 dppF dipeptide transporter ATP-binding subunit; Pr 99.61
PRK10762 501 D-ribose transporter ATP binding protein; Provisio 99.61
PRK10771232 thiQ thiamine transporter ATP-binding subunit; Pro 99.61
PRK09580248 sufC cysteine desulfurase ATPase component; Review 99.6
PRK14247250 phosphate ABC transporter ATP-binding protein; Pro 99.6
PRK14269246 phosphate ABC transporter ATP-binding protein; Pro 99.6
PRK14239252 phosphate transporter ATP-binding protein; Provisi 99.6
PRK10418254 nikD nickel transporter ATP-binding protein NikD; 99.6
PRK14267253 phosphate ABC transporter ATP-binding protein; Pro 99.6
PRK13549 506 xylose transporter ATP-binding subunit; Provisiona 99.6
PRK14254285 phosphate ABC transporter ATP-binding protein; Pro 99.6
TIGR00972247 3a0107s01c2 phosphate ABC transporter, ATP-binding 99.6
PRK10070400 glycine betaine transporter ATP-binding subunit; P 99.6
TIGR01277213 thiQ thiamine ABC transporter, ATP-binding protein 99.6
PRK14265274 phosphate ABC transporter ATP-binding protein; Pro 99.6
cd03267236 ABC_NatA_like Similar in sequence to NatA, this is 99.6
PRK09700 510 D-allose transporter ATP-binding protein; Provisio 99.6
PRK13640282 cbiO cobalt transporter ATP-binding subunit; Provi 99.6
PRK14235267 phosphate transporter ATP-binding protein; Provisi 99.6
PRK11022326 dppD dipeptide transporter ATP-binding subunit; Pr 99.6
PRK09473330 oppD oligopeptide transporter ATP-binding componen 99.6
TIGR02982220 heterocyst_DevA ABC exporter ATP-binding subunit, 99.6
cd03245220 ABCC_bacteriocin_exporters ABC-type bacteriocin ex 99.59
PRK14270251 phosphate ABC transporter ATP-binding protein; Pro 99.59
PRK13645289 cbiO cobalt transporter ATP-binding subunit; Provi 99.59
PRK10636638 putative ABC transporter ATP-binding protein; Prov 99.59
PRK13639275 cbiO cobalt transporter ATP-binding subunit; Provi 99.59
COG1117253 PstB ABC-type phosphate transport system, ATPase c 99.59
COG0488530 Uup ATPase components of ABC transporters with dup 99.59
PRK14249251 phosphate ABC transporter ATP-binding protein; Pro 99.59
PRK14251251 phosphate ABC transporter ATP-binding protein; Pro 99.59
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 99.59
PRK14243264 phosphate transporter ATP-binding protein; Provisi 99.59
PRK14256252 phosphate ABC transporter ATP-binding protein; Pro 99.59
TIGR01189198 ccmA heme ABC exporter, ATP-binding protein CcmA. 99.59
PRK14237267 phosphate transporter ATP-binding protein; Provisi 99.59
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 99.59
PRK11288 501 araG L-arabinose transporter ATP-binding protein; 99.58
PRK14261253 phosphate ABC transporter ATP-binding protein; Pro 99.58
PRK14262250 phosphate ABC transporter ATP-binding protein; Pro 99.58
CHL00131252 ycf16 sulfate ABC transporter protein; Validated 99.58
PRK14255252 phosphate ABC transporter ATP-binding protein; Pro 99.58
PRK13409590 putative ATPase RIL; Provisional 99.58
cd03297214 ABC_ModC_molybdenum_transporter ModC is an ABC-typ 99.58
PRK14253249 phosphate ABC transporter ATP-binding protein; Pro 99.58
PRK14258261 phosphate ABC transporter ATP-binding protein; Pro 99.58
COG0488 530 Uup ATPase components of ABC transporters with dup 99.58
PRK14271276 phosphate ABC transporter ATP-binding protein; Pro 99.58
TIGR03269 520 met_CoM_red_A2 methyl coenzyme M reductase system, 99.58
TIGR01186363 proV glycine betaine/L-proline transport ATP bindi 99.58
TIGR02324224 CP_lyasePhnL phosphonate C-P lyase system protein 99.58
PRK11144352 modC molybdate transporter ATP-binding protein; Pr 99.58
PRK14236272 phosphate transporter ATP-binding protein; Provisi 99.58
TIGR02770230 nickel_nikD nickel import ATP-binding protein NikD 99.57
PRK10938490 putative molybdenum transport ATP-binding protein 99.57
cd03254229 ABCC_Glucan_exporter_like Glucan exporter ATP-bind 99.57
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 99.57
PRK14241258 phosphate transporter ATP-binding protein; Provisi 99.57
COG1135339 AbcC ABC-type metal ion transport system, ATPase c 99.57
PRK14240250 phosphate transporter ATP-binding protein; Provisi 99.57
cd03233202 ABC_PDR_domain1 The pleiotropic drug resistance (P 99.57
TIGR02633 500 xylG D-xylose ABC transporter, ATP-binding protein 99.57
PRK14238271 phosphate transporter ATP-binding protein; Provisi 99.57
cd03248226 ABCC_TAP TAP, the Transporter Associated with Anti 99.57
PRK14260259 phosphate ABC transporter ATP-binding protein; Pro 99.57
cd03244221 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. 99.57
PRK15134 529 microcin C ABC transporter ATP-binding protein Yej 99.57
TIGR02142354 modC_ABC molybdenum ABC transporter, ATP-binding p 99.57
PRK14272252 phosphate ABC transporter ATP-binding protein; Pro 99.57
PRK13642277 cbiO cobalt transporter ATP-binding subunit; Provi 99.56
PRK13547272 hmuV hemin importer ATP-binding subunit; Provision 99.56
PRK14264305 phosphate ABC transporter ATP-binding protein; Pro 99.56
COG0396251 sufC Cysteine desulfurase activator ATPase [Posttr 99.56
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 99.56
PRK09700510 D-allose transporter ATP-binding protein; Provisio 99.56
PRK14244251 phosphate ABC transporter ATP-binding protein; Pro 99.56
cd03251234 ABCC_MsbA MsbA is an essential ABC transporter, cl 99.56
PRK14246257 phosphate ABC transporter ATP-binding protein; Pro 99.56
PRK15064 530 ABC transporter ATP-binding protein; Provisional 99.56
cd03299235 ABC_ModC_like Archeal protein closely related to M 99.55
TIGR01184230 ntrCD nitrate transport ATP-binding subunits C and 99.55
cd03220224 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo 99.55
TIGR03269520 met_CoM_red_A2 methyl coenzyme M reductase system, 99.55
COG1129 500 MglA ABC-type sugar transport system, ATPase compo 99.55
cd03369207 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty 99.55
PRK15134529 microcin C ABC transporter ATP-binding protein Yej 99.55
cd03252237 ABCC_Hemolysin The ABC-transporter hemolysin B is 99.55
PRK13545 549 tagH teichoic acids export protein ATP-binding sub 99.55
PRK10261 623 glutathione transporter ATP-binding protein; Provi 99.55
cd03249238 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) 99.54
PRK14252265 phosphate ABC transporter ATP-binding protein; Pro 99.54
cd03253236 ABCC_ATM1_transporter ATM1 is an ABC transporter t 99.54
PRK11819 556 putative ABC transporter ATP-binding protein; Revi 99.54
PLN03073718 ABC transporter F family; Provisional 99.54
PRK10982 491 galactose/methyl galaxtoside transporter ATP-bindi 99.54
PRK13546264 teichoic acids export protein ATP-binding subunit; 99.54
TIGR012572272 rim_protein retinal-specific rim ABC transporter. 99.54
PRK13549506 xylose transporter ATP-binding subunit; Provisiona 99.54
PRK15064530 ABC transporter ATP-binding protein; Provisional 99.54
PRK10261623 glutathione transporter ATP-binding protein; Provi 99.54
PRK14266250 phosphate ABC transporter ATP-binding protein; Pro 99.53
COG4674249 Uncharacterized ABC-type transport system, ATPase 99.53
TIGR02633500 xylG D-xylose ABC transporter, ATP-binding protein 99.53
PRK14263261 phosphate ABC transporter ATP-binding protein; Pro 99.52
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 99.52
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 99.52
TIGR03415382 ABC_choXWV_ATP choline ABC transporter, ATP-bindin 99.52
cd03234226 ABCG_White The White subfamily represents ABC tran 99.52
cd03290218 ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec 99.52
PRK15439510 autoinducer 2 ABC transporter ATP-binding protein 99.52
TIGR03719552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 99.52
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 99.51
PRK10762501 D-ribose transporter ATP binding protein; Provisio 99.5
PRK11819556 putative ABC transporter ATP-binding protein; Revi 99.5
PRK03695248 vitamin B12-transporter ATPase; Provisional 99.5
TIGR03719 552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 99.5
TIGR01257 2272 rim_protein retinal-specific rim ABC transporter. 99.5
PRK10636 638 putative ABC transporter ATP-binding protein; Prov 99.5
PRK10982491 galactose/methyl galaxtoside transporter ATP-bindi 99.5
cd03288257 ABCC_SUR2 The SUR domain 2. The sulfonylurea recep 99.49
PRK14257329 phosphate ABC transporter ATP-binding protein; Pro 99.49
cd03291282 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic 99.48
PRK11288501 araG L-arabinose transporter ATP-binding protein; 99.48
COG4181228 Predicted ABC-type transport system involved in ly 99.48
PRK11147635 ABC transporter ATPase component; Reviewed 99.48
COG4598256 HisP ABC-type histidine transport system, ATPase c 99.48
COG4619223 ABC-type uncharacterized transport system, ATPase 99.48
TIGR03771223 anch_rpt_ABC anchored repeat-type ABC transporter, 99.48
cd03236255 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o 99.47
COG2274709 SunT ABC-type bacteriocin/lantibiotic exporters, c 99.46
COG0444316 DppD ABC-type dipeptide/oligopeptide/nickel transp 99.45
PRK15177213 Vi polysaccharide export ATP-binding protein VexC; 99.45
PRK11147 635 ABC transporter ATPase component; Reviewed 99.45
COG4525259 TauB ABC-type taurine transport system, ATPase com 99.45
KOG0062 582 consensus ATPase component of ABC transporters wit 99.45
COG1134249 TagH ABC-type polysaccharide/polyol phosphate tran 99.45
PRK10522547 multidrug transporter membrane component/ATP-bindi 99.44
COG4604252 CeuD ABC-type enterochelin transport system, ATPas 99.44
PRK13409 590 putative ATPase RIL; Provisional 99.44
COG4559259 ABC-type hemin transport system, ATPase component 99.44
TIGR03797686 NHPM_micro_ABC2 NHPM bacteriocin system ABC transp 99.43
COG1123 539 ATPase components of various ABC-type transport sy 99.42
PRK13657588 cyclic beta-1,2-glucan ABC transporter; Provisiona 99.42
PLN03073 718 ABC transporter F family; Provisional 99.42
COG4988559 CydD ABC-type transport system involved in cytochr 99.42
COG3845 501 ABC-type uncharacterized transport systems, ATPase 99.42
COG4586325 ABC-type uncharacterized transport system, ATPase 99.42
TIGR01194555 cyc_pep_trnsptr cyclic peptide transporter. This m 99.41
TIGR01842544 type_I_sec_PrtD type I secretion system ABC transp 99.41
PLN03211 659 ABC transporter G-25; Provisional 99.41
PRK10790592 putative multidrug transporter membrane\ATP-bindin 99.4
TIGR03375694 type_I_sec_LssB type I secretion system ATPase, Ls 99.4
COG3840231 ThiQ ABC-type thiamine transport system, ATPase co 99.39
COG4133209 CcmA ABC-type transport system involved in cytochr 99.39
TIGR03796710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 99.39
TIGR01193708 bacteriocin_ABC ABC-type bacteriocin transporter. 99.39
TIGR02203571 MsbA_lipidA lipid A export permease/ATP-binding pr 99.39
COG4175386 ProV ABC-type proline/glycine betaine transport sy 99.39
TIGR02204576 MsbA_rel ABC transporter, permease/ATP-binding pro 99.39
PRK11176582 lipid transporter ATP-binding/permease protein; Pr 99.38
TIGR01192585 chvA glucan exporter ATP-binding protein. This mod 99.37
cd03278197 ABC_SMC_barmotin Barmotin is a tight junction-asso 99.37
COG4107258 PhnK ABC-type phosphonate transport system, ATPase 99.36
PRK10535 648 macrolide transporter ATP-binding /permease protei 99.36
COG1123539 ATPase components of various ABC-type transport sy 99.36
TIGR00954659 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA 99.36
TIGR01187325 potA spermidine/putrescine ABC transporter ATP-bin 99.35
PRK11160574 cysteine/glutathione ABC transporter membrane/ATP- 99.35
PRK10789569 putative multidrug transporter membrane\ATP-bindin 99.35
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 99.35
TIGR01846694 type_I_sec_HlyB type I secretion system ABC transp 99.35
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 99.34
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 99.34
PF05188137 MutS_II: MutS domain II; InterPro: IPR007860 Misma 99.34
TIGR02857529 CydD thiol reductant ABC exporter, CydD subunit. U 99.34
TIGR00958711 3a01208 Conjugate Transporter-2 (CT2) Family prote 99.34
KOG0057591 consensus Mitochondrial Fe/S cluster exporter, ABC 99.34
KOG0927614 consensus Predicted transporter (ABC superfamily) 99.33
cd03270226 ABC_UvrA_I The excision repair protein UvrA domain 99.3
COG4987573 CydC ABC-type transport system involved in cytochr 99.3
KOG0059885 consensus Lipid exporter ABCA1 and related protein 99.29
TIGR00955 617 3a01204 The Eye Pigment Precursor Transporter (EPP 99.28
COG4618580 ArpD ABC-type protease/lipase transport system, AT 99.28
PLN03140 1470 ABC transporter G family member; Provisional 99.28
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 99.27
PTZ00265 1466 multidrug resistance protein (mdr1); Provisional 99.26
cd03279213 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex 99.24
COG4161242 ArtP ABC-type arginine transport system, ATPase co 99.21
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 99.19
COG1101263 PhnK ABC-type uncharacterized transport system, AT 99.19
TIGR00957 1522 MRP_assoc_pro multi drug resistance-associated pro 99.18
PTZ00243 1560 ABC transporter; Provisional 99.17
COG4148352 ModC ABC-type molybdate transport system, ATPase c 99.17
PLN03140 1470 ABC transporter G family member; Provisional 99.17
KOG0927 614 consensus Predicted transporter (ABC superfamily) 99.16
COG4778235 PhnL ABC-type phosphonate transport system, ATPase 99.16
PLN032321495 ABC transporter C family member; Provisional 99.16
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 99.15
TIGR01271 1490 CFTR_protein cystic fibrosis transmembrane conduct 99.15
PLN031301622 ABC transporter C family member; Provisional 99.15
PLN03232 1495 ABC transporter C family member; Provisional 99.14
cd03240204 ABC_Rad50 The catalytic domains of Rad50 are simil 99.13
cd03271261 ABC_UvrA_II The excision repair protein UvrA domai 99.12
KOG0055 1228 consensus Multidrug/pheromone exporter, ABC superf 99.12
TIGR012711490 CFTR_protein cystic fibrosis transmembrane conduct 99.11
cd03274212 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein 99.1
PLN03130 1622 ABC transporter C family member; Provisional 99.09
PTZ002431560 ABC transporter; Provisional 99.09
TIGR009571522 MRP_assoc_pro multi drug resistance-associated pro 99.08
PTZ002651466 multidrug resistance protein (mdr1); Provisional 99.07
KOG0061 613 consensus Transporter, ABC superfamily (Breast can 99.07
cd03276198 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein 99.06
KOG0066807 consensus eIF2-interacting protein ABC50 (ABC supe 99.06
KOG0056790 consensus Heavy metal exporter HMT1, ABC superfami 99.06
PF00005137 ABC_tran: ABC transporter This structure is on hol 99.04
COG4136213 ABC-type uncharacterized transport system, ATPase 99.02
COG4172 534 ABC-type uncharacterized transport system, duplica 99.01
cd03239178 ABC_SMC_head The structural maintenance of chromos 99.0
cd03272243 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein 99.0
cd03275247 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein 98.99
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 98.98
COG2401593 ABC-type ATPase fused to a predicted acetyltransfe 98.96
cd03273251 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein 98.96
COG4615546 PvdE ABC-type siderophore export system, fused ATP 98.89
COG4172534 ABC-type uncharacterized transport system, duplica 98.87
cd03277213 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein 98.86
COG4138248 BtuD ABC-type cobalamin transport system, ATPase c 98.86
COG4178604 ABC-type uncharacterized transport system, permeas 98.86
KOG0062582 consensus ATPase component of ABC transporters wit 98.84
COG1245 591 Predicted ATPase, RNase L inhibitor (RLI) homolog 98.79
TIGR00630924 uvra excinuclease ABC, A subunit. This family is b 98.76
KOG00551228 consensus Multidrug/pheromone exporter, ABC superf 98.75
PRK00349943 uvrA excinuclease ABC subunit A; Reviewed 98.72
COG1245591 Predicted ATPase, RNase L inhibitor (RLI) homolog 98.71
PRK00635 1809 excinuclease ABC subunit A; Provisional 98.66
KOG0066 807 consensus eIF2-interacting protein ABC50 (ABC supe 98.65
KOG2355291 consensus Predicted ABC-type transport, ATPase com 98.61
KOG0064728 consensus Peroxisomal long-chain acyl-CoA transpor 98.59
KOG0054 1381 consensus Multidrug resistance-associated protein/ 98.57
COG3910233 Predicted ATPase [General function prediction only 98.49
KOG0060659 consensus Long-chain acyl-CoA transporter, ABC sup 98.47
COG4167267 SapF ABC-type antimicrobial peptide transport syst 98.47
COG1129500 MglA ABC-type sugar transport system, ATPase compo 98.42
cd03241276 ABC_RecN RecN ATPase involved in DNA repair; ABC ( 98.41
COG4170330 SapD ABC-type antimicrobial peptide transport syst 98.38
KOG00541381 consensus Multidrug resistance-associated protein/ 98.37
KOG0065 1391 consensus Pleiotropic drug resistance proteins (PD 98.37
COG5265497 ATM1 ABC-type transport system involved in Fe-S cl 98.34
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 98.22
PRK08533230 flagellar accessory protein FlaH; Reviewed 98.1
PRK006351809 excinuclease ABC subunit A; Provisional 98.08
PF02463220 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: 98.08
PRK13695174 putative NTPase; Provisional 98.03
COG0178935 UvrA Excinuclease ATPase subunit [DNA replication, 98.01
cd03242270 ABC_RecF RecF is a recombinational DNA repair ATPa 97.96
PF13304303 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T 97.94
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.9
cd01124187 KaiC KaiC is a circadian clock protein primarily f 97.85
smart00382148 AAA ATPases associated with a variety of cellular 97.85
PRK06067234 flagellar accessory protein FlaH; Validated 97.78
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 97.64
KOG0219902 consensus Mismatch repair ATPase MSH2 (MutS family 97.57
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 97.48
PRK09183259 transposase/IS protein; Provisional 97.47
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.41
COG3845501 ABC-type uncharacterized transport systems, ATPase 97.4
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.37
PRK04296190 thymidine kinase; Provisional 97.32
KOG0063592 consensus RNAse L inhibitor, ABC superfamily [RNA 97.32
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 97.25
KOG0065 1391 consensus Pleiotropic drug resistance proteins (PD 97.25
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 97.15
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 97.12
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 97.12
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 97.12
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.12
PRK06526254 transposase; Provisional 97.1
PRK06893229 DNA replication initiation factor; Validated 97.09
PRK06921266 hypothetical protein; Provisional 97.06
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 97.05
PRK14723 767 flhF flagellar biosynthesis regulator FlhF; Provis 97.04
TIGR00630 924 uvra excinuclease ABC, A subunit. This family is b 97.03
PF1355562 AAA_29: P-loop containing region of AAA domain 97.03
PRK00349 943 uvrA excinuclease ABC subunit A; Reviewed 96.99
cd01393226 recA_like RecA is a bacterial enzyme which has rol 96.99
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.99
PRK06793432 fliI flagellum-specific ATP synthase; Validated 96.98
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 96.96
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.96
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 96.96
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 96.95
PRK07721438 fliI flagellum-specific ATP synthase; Validated 96.9
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.89
PRK14088440 dnaA chromosomal replication initiation protein; P 96.88
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 96.85
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 96.84
PF00004132 AAA: ATPase family associated with various cellula 96.83
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 96.83
PRK08181269 transposase; Validated 96.81
PF13173128 AAA_14: AAA domain 96.77
TIGR00767415 rho transcription termination factor Rho. Members 96.76
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 96.75
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 96.75
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 96.73
PRK11823 446 DNA repair protein RadA; Provisional 96.72
TIGR02237209 recomb_radB DNA repair and recombination protein R 96.72
PRK12377248 putative replication protein; Provisional 96.71
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 96.68
TIGR02012321 tigrfam_recA protein RecA. This model describes or 96.68
PRK07952244 DNA replication protein DnaC; Validated 96.67
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.66
PLN03210 1153 Resistant to P. syringae 6; Provisional 96.63
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.63
PRK09361225 radB DNA repair and recombination protein RadB; Pr 96.62
cd01128249 rho_factor Transcription termination factor rho is 96.61
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 96.59
PRK08727233 hypothetical protein; Validated 96.56
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 96.54
PRK08939306 primosomal protein DnaI; Reviewed 96.53
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-139  Score=1237.09  Aligned_cols=761  Identities=38%  Similarity=0.603  Sum_probs=613.0

Q ss_pred             ccCCcccccCCCCCCcCCCCCCCCCCCCCcccccChhhhccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHh
Q 040956          229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGH  308 (1085)
Q Consensus       229 ~~~~~~~~l~p~~irD~~gr~p~dp~YDp~Tl~iP~~~~~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaa  308 (1085)
                      ..++++.||.++++||+++|||+||+|||+||||||++|+++||+++|||+||++|||+|||||+|||||||++||.+++
T Consensus       207 ~~~E~~r~l~~e~~RD~~rrr~~dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~  286 (1125)
T KOG0217|consen  207 FDHEKERYLKLEDVRDALRRRRGDPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGA  286 (1125)
T ss_pred             hcccchhhccHHHhhhhhcCCCCCCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhh
Confidence            34555667777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccEEEecCCCCccccccCccCHHHHHHHHHHcCCeEEEEeecCChHHHhhcc-----CCCceeeeEEEEecCCcccc
Q 040956          309 KELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPSTTVD  383 (1085)
Q Consensus       309 k~L~L~lT~~~~g~~~~aGfPe~sl~~y~~kLV~~GYKVAVVEQ~Et~~~~k~r~-----~~~vv~Rev~~V~TpGT~~d  383 (1085)
                      ++|+|++|.   ++++|+||||++|+.|+.+|+++|||||+|||+|||.++..|.     +++||+||||+|+|+||++|
T Consensus       287 ~~~dl~f~~---vN~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td  363 (1125)
T KOG0217|consen  287 RLFDLKFMD---VNMPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTD  363 (1125)
T ss_pred             hhcceeecc---cccccCCCCccchhhHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchh
Confidence            999999984   8999999999999999999999999999999999999887663     36799999999999999999


Q ss_pred             CCCC--CCCceEEEEeecCCCCCCCCceEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHH
Q 040956          384 GTIG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK  461 (1085)
Q Consensus       384 ~~~~--~~~~yllaI~E~~~~~~~~~~~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k  461 (1085)
                      ..+.  +.+.||+||+|.......+...+|+|++|++||+|+++||+||..++.|+|+|.|++|+|+|.+.++++..+..
T Consensus       364 ~~l~~~~~akylmai~e~~~~~~~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~  443 (1125)
T KOG0217|consen  364 IALLTSDLAKYLMAIKESEESYSTGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKV  443 (1125)
T ss_pred             HHHhccHHHHHHHHHhhcCCCCCcCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceee
Confidence            7764  34679999998755333567889999999999999999999999999999999999999999999998877765


Q ss_pred             HHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCCCC-CCchhhhhhh-hcCchhHHHHHHHHHHHHHHhccccc
Q 040956          462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS-SSPWSKALEN-VMQHDIGFSALGGLISHLSRLMLDDV  539 (1085)
Q Consensus       462 ~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~-~~~~~~~l~~-~~~~~~al~Alg~ll~YL~~~~l~~~  539 (1085)
                      .++-.+..+..  .+-++ ..+||+++.+.+.+-...||... ...|+..+.. ..+.+++++|+|++++||+.+.+|..
T Consensus       444 ~ik~~~~~~~~--~n~~~-~~eFwdsek~~~eii~~dy~~~~g~e~~~sil~~p~~~~~la~safg~~~~Ylk~~~id~~  520 (1125)
T KOG0217|consen  444 IIKLKLSSNLV--ENLVP-KSEFWDSEKTGREIISEDYFESLGLEDSPSILKSPNTDKELALSAFGGLFYYLKKLLIDEE  520 (1125)
T ss_pred             eeeeeecchhh--hcccC-hhhhcchhhHHHHHhhhhhhhcccccCchhhccCCCccchhhHHHHHHHHHHHHHHhhHHH
Confidence            55433221111  22233 45999998887755556787721 3345555543 23467999999999999999999874


Q ss_pred             -cccCCccccccc-cccccccccee--------------------ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHH
Q 040956          540 -LRNGDILPYKVY-RDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV  597 (1085)
Q Consensus       540 -l~~~~~~~~~~~-~~~m~lD~~Tl--------------------~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daV  597 (1085)
                       ++...+..|... ...|.+|++||                    .+|+|.||||||||+.|+++||+|.+.|++|||||
T Consensus       521 llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav  600 (1125)
T KOG0217|consen  521 LLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAV  600 (1125)
T ss_pred             HhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHH
Confidence             333333333221 34599999998                    89999999999999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 040956          598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM------  671 (1085)
Q Consensus       598 e~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~~l~~l~~~~l~~~i~~~~~l~~~l~~~~d~l~~l------  671 (1085)
                      +.|..++..+..+...|+++||+||+|.|+|+......             ..+..|...+.+++...+++..+      
T Consensus       601 ~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~-------------k~i~~f~rvLegfk~~~~~~~~~~~v~~~  667 (1125)
T KOG0217|consen  601 DSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNK-------------KKIADFIRVLEGFKEINKLLGSLINVLKE  667 (1125)
T ss_pred             HHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccch-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999997532200             00011111111111100000000      


Q ss_pred             -------HHhccCcchh-------hhhc---------CCCcccCC---------------CcHHHHHHHHHHh-------
Q 040956          672 -------HKEGHIIPSL-------SRIF---------KPPIFDGS---------------DGLDKFLTQFEAA-------  706 (1085)
Q Consensus       672 -------~~~~~~i~~l-------~~~~---------~~~~l~~~---------------~~l~~~l~~~e~~-------  706 (1085)
                             .......+.+       ...+         .++...+.               +.+..++.++...       
T Consensus       668 ~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c~si~  747 (1125)
T KOG0217|consen  668 GEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGCSSIV  747 (1125)
T ss_pred             hHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence                   0000000000       0000         00000000               0011111111111       


Q ss_pred             -----------------------------hccCCCcccccccchH--------------HHHHHHHHHHHHHHHHHHHHH
Q 040956          707 -----------------------------IDSDFPDYQNHDVTDL--------------DAETLSILIELFIEKASQWSE  743 (1085)
Q Consensus       707 -----------------------------i~~~~~~~~~~~i~~~--------------~~~~l~~l~~~~~~~~~~~~~  743 (1085)
                                                   -.+.+.+|.++++...              .....++++.+|.+++..|++
T Consensus       748 ~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~  827 (1125)
T KOG0217|consen  748 FVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQA  827 (1125)
T ss_pred             EeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence                                         1123456666554332              123346778889999999999


Q ss_pred             HHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecC-CCCcccccccccCCCCCC
Q 040956          744 VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDD  822 (1085)
Q Consensus       744 ~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~-~~~~~V~ndisL~~~~~~  822 (1085)
                      ++.+++.||||+|+|.+|....+++|||+++....        ..+.+.++.++|||+... .++.|||||+.++...  
T Consensus       828 tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d--------t~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~--  897 (1125)
T KOG0217|consen  828 TVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD--------TPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGAE--  897 (1125)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCcccceeecccC--------CCceeEEecccCceeecCcCCCccccchhhccccc--
Confidence            99999999999999999998889999999985432        224899999999998653 3467999999998542  


Q ss_pred             CCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC
Q 040956          823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA  902 (1085)
Q Consensus       823 ~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a  902 (1085)
                       .....++|||||+|||||||++|.++||||+||+|||+.+.++++|+||+|+|+.|+++.|.|||++|+.|++.||..+
T Consensus       898 -e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~a  976 (1125)
T KOG0217|consen  898 -ENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHA  976 (1125)
T ss_pred             -cceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhc
Confidence             4556779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCc
Q 040956          903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE  982 (1085)
Q Consensus       903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~  982 (1085)
                      |++||||+||+||||++.||.+||.++|++|....+|..+|+||||.++..+.+||.|.+.||+|.++.        +.+
T Consensus       977 T~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~--------e~~ 1048 (1125)
T KOG0217|consen  977 TRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDE--------EID 1048 (1125)
T ss_pred             CccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecC--------Ccc
Confidence            999999999999999999999999999999999899999999999999999999999999999999862        337


Q ss_pred             EEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 040956          983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027 (1085)
Q Consensus       983 i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~~ 1027 (1085)
                      ++|+|++.+|+|++|||++||+|||+|.+||++|..++.+++...
T Consensus      1049 vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~ 1093 (1125)
T KOG0217|consen 1049 VTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSS 1093 (1125)
T ss_pred             EEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998875

>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01070 mutS1 DNA mismatch repair protein MutS Back     alignment and domain information
>PRK05399 DNA mismatch repair protein MutS; Provisional Back     alignment and domain information
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair] Back     alignment and domain information
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>PF00488 MutS_V: MutS domain V C-terminus Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes Back     alignment and domain information
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes Back     alignment and domain information
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes Back     alignment and domain information
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>PF01624 MutS_I: MutS domain I C-terminus Back     alignment and domain information
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport Back     alignment and domain information
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK13537 nodulation ABC transporter NodI; Provisional Back     alignment and domain information
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK13536 nodulation factor exporter subunit NodI; Provisional Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI Back     alignment and domain information
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin Back     alignment and domain information
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup Back     alignment and domain information
>PF05192 MutS_III: MutS domain III C-terminus Back     alignment and domain information
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively Back     alignment and domain information
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein Back     alignment and domain information
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK Back     alignment and domain information
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance Back     alignment and domain information
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional Back     alignment and domain information
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively Back     alignment and domain information
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed Back     alignment and domain information
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters Back     alignment and domain information
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity Back     alignment and domain information
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system Back     alignment and domain information
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional Back     alignment and domain information
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids Back     alignment and domain information
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional Back     alignment and domain information
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit Back     alignment and domain information
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed Back     alignment and domain information
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane Back     alignment and domain information
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed Back     alignment and domain information
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT Back     alignment and domain information
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE Back     alignment and domain information
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids Back     alignment and domain information
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) Back     alignment and domain information
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional Back     alignment and domain information
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein Back     alignment and domain information
>PRK13651 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10908 cell division protein FtsE; Provisional Back     alignment and domain information
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD Back     alignment and domain information
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient Back     alignment and domain information
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional Back     alignment and domain information
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional Back     alignment and domain information
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14242 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter Back     alignment and domain information
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component Back     alignment and domain information
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE Back     alignment and domain information
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional Back     alignment and domain information
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional Back     alignment and domain information
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit Back     alignment and domain information
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01978 sufC FeS assembly ATPase SufC Back     alignment and domain information
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component Back     alignment and domain information
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK13633 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK Back     alignment and domain information
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C Back     alignment and domain information
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D Back     alignment and domain information
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein Back     alignment and domain information
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP Back     alignment and domain information
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit Back     alignment and domain information
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group Back     alignment and domain information
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed Back     alignment and domain information
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14239 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional Back     alignment and domain information
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14235 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional Back     alignment and domain information
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family Back     alignment and domain information
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters Back     alignment and domain information
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14243 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA Back     alignment and domain information
>PRK14237 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>CHL00131 ycf16 sulfate ABC transporter protein; Validated Back     alignment and domain information
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB Back     alignment and domain information
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit Back     alignment and domain information
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL Back     alignment and domain information
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14236 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>PRK14241 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14240 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14238 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules Back     alignment and domain information
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins Back     alignment and domain information
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03299 ABC_ModC_like Archeal protein closely related to ModC Back     alignment and domain information
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D Back     alignment and domain information
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E Back     alignment and domain information
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 Back     alignment and domain information
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors Back     alignment and domain information
>cd03290 ABCC_SUR1_N The SUR domain 1 Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK03695 vitamin B12-transporter ATPase; Provisional Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03288 ABCC_SUR2 The SUR domain 2 Back     alignment and domain information
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit Back     alignment and domain information
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Back     alignment and domain information
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] Back     alignment and domain information
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter Back     alignment and domain information
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family Back     alignment and domain information
>PLN03211 ABC transporter G-25; Provisional Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family Back     alignment and domain information
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] Back     alignment and domain information
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter Back     alignment and domain information
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA Back     alignment and domain information
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function Back     alignment and domain information
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei Back     alignment and domain information
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit Back     alignment and domain information
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] Back     alignment and domain information
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein Back     alignment and domain information
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends Back     alignment and domain information
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] Back     alignment and domain information
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains Back     alignment and domain information
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] Back     alignment and domain information
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>TIGR00630 uvra excinuclease ABC, A subunit Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>PRK00635 excinuclease ABC subunit A; Provisional Back     alignment and domain information
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] Back     alignment and domain information
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] Back     alignment and domain information
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG3910 Predicted ATPase [General function prediction only] Back     alignment and domain information
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK00635 excinuclease ABC subunit A; Provisional Back     alignment and domain information
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage Back     alignment and domain information
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR00630 uvra excinuclease ABC, A subunit Back     alignment and domain information
>PF13555 AAA_29: P-loop containing region of AAA domain Back     alignment and domain information
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06793 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>PRK07721 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1085
2o8b_B1022 Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M 8e-67
1nne_A765 Crystal Structure Of The Muts-adpbef3-dna Complex L 8e-58
1ewq_A765 Crystal Structure Taq Muts Complexed With A Heterod 1e-55
1fw6_A768 Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com 1e-55
3thw_B918 Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo 2e-49
1ewr_A649 Crystal Structure Of Taq Muts Length = 649 1e-45
2o8e_A934 Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, 2e-45
2o8b_A934 Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M 3e-45
1wbd_A800 Crystal Structure Of E. Coli Dna Mismatch Repair En 6e-40
1wb9_A800 Crystal Structure Of E. Coli Dna Mismatch Repair En 6e-40
1oh5_A800 The Crystal Structure Of E. Coli Muts Binding To Dn 6e-40
1wbb_A800 Crystal Structure Of E. Coli Dna Mismatch Repair En 7e-40
3k0s_A799 Crystal Structure Of E.Coli Dna Mismatch Repair Pro 2e-39
1ng9_A800 E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt 5e-39
1e3m_A800 The Crystal Structure Of E. Coli Muts Binding To Dn 2e-37
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022 Back     alignment and structure 
Iteration: 1

 Score =  252 bits (643), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734  FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
            F +    W   +  I+ +DVL   A  +    G M RP+IL     P        P L++
Sbjct: 702  FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 753
Query: 794  KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
            KG  HP       G   +PNDIL+G   E+ ++     +L+TGPNMGGKSTL+R   L  
Sbjct: 754  KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 813
Query: 850  ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
            ++AQ+GC+VP E+C L+  D +FTRLGA+DRIM+GESTF VE +ETAS+L  AT  SLV+
Sbjct: 814  VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 873
Query: 910  LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
            +DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ +  V L HMAC  
Sbjct: 874  VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 933
Query: 970  KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
            ++  E+ S+  + + FLY+   GACP+SYG   A +A +P++V++     A   +K
Sbjct: 934  ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765 Back     alignment and structure
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 Back     alignment and structure
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 Back     alignment and structure
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918 Back     alignment and structure
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649 Back     alignment and structure
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934 Back     alignment and structure
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934 Back     alignment and structure
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 Back     alignment and structure
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 Back     alignment and structure
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800 Back     alignment and structure
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 Back     alignment and structure
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799 Back     alignment and structure
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 Back     alignment and structure
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1085
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 1e-118
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 1e-111
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 5e-97
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 6e-69
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 8e-87
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 1e-48
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 5e-82
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 2e-43
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 4e-77
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 2e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 9e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022 Back     alignment and structure
 Score =  388 bits (998), Expect = e-118
 Identities = 132/330 (40%), Positives = 190/330 (57%), Gaps = 16/330 (4%)

Query: 730  LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
            L   F +    W   +  I+ +DVL   A  +    G M RP+I        +  ++  P
Sbjct: 698  LFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI--------LLPEDTPP 749

Query: 790  VLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCL---PRTLLLTGPNMGGKSTLLRAT 845
             L++KG  HP       G   +PNDIL+G + ++        +L+TGPNMGGKSTL+R  
Sbjct: 750  FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809

Query: 846  CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
             L  ++AQ+GC+VP E+C L+  D +FTRLGA+DRIM+GESTF VE +ETAS+L  AT  
Sbjct: 810  GLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAH 869

Query: 906  SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
            SLV++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ +  V L HM
Sbjct: 870  SLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHM 929

Query: 966  ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA--LAM 1023
            AC     +E      + + FLY+   GACP+SYG   A +A +P++V++     A     
Sbjct: 930  AC--MVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987

Query: 1024 KKSIGESFKSSEQRSEFSSLHEEWLKTIVN 1053
                   F+     SE S++  E +  ++ 
Sbjct: 988  MNQSLRLFREVCLASERSTVDAEAVHKLLT 1017
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022 Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918 Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918 Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934 Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934 Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1085
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 100.0
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 100.0
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 100.0
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 100.0
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 100.0
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 99.76
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 99.76
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 99.76
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 99.76
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 99.75
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 99.75
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 99.75
1g6h_A257 High-affinity branched-chain amino acid transport 99.74
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 99.74
1b0u_A262 Histidine permease; ABC transporter, transport pro 99.74
1ji0_A240 ABC transporter; ATP binding protein, structural g 99.74
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 99.74
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 99.74
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 99.73
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 99.72
3d31_A348 Sulfate/molybdate ABC transporter, ATP-binding pro 99.72
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 99.72
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 99.71
1sgw_A214 Putative ABC transporter; structural genomics, P p 99.71
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 99.71
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 99.71
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 99.71
1g29_1372 MALK, maltose transport protein MALK; ATPase, acti 99.7
1oxx_K353 GLCV, glucose, ABC transporter, ATP binding protei 99.69
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 99.68
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 99.68
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 99.68
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 99.66
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 99.66
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 99.64
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 99.64
2ghi_A260 Transport protein; multidrug resistance protein, M 99.63
2pjz_A263 Hypothetical protein ST1066; ATP binding protein, 99.63
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 99.63
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 99.61
2bbs_A290 Cystic fibrosis transmembrane conductance regulato 99.58
1yqt_A538 RNAse L inhibitor; ATP-binding cassette, ribosome 99.56
3bk7_A607 ABC transporter ATP-binding protein; ABC ATPase, i 99.55
3gd7_A390 Fusion complex of cystic fibrosis transmembrane co 99.55
3ozx_A538 RNAse L inhibitor; ATP binding cassette protein, h 99.54
3bk7_A 607 ABC transporter ATP-binding protein; ABC ATPase, i 99.53
1yqt_A 538 RNAse L inhibitor; ATP-binding cassette, ribosome 99.53
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 99.49
4a82_A578 Cystic fibrosis transmembrane conductance regulat; 99.48
3qf4_B598 Uncharacterized ABC transporter ATP-binding prote 99.48
2yl4_A595 ATP-binding cassette SUB-family B member 10, mitoc 99.48
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.47
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 99.47
3j16_B608 RLI1P; ribosome recycling, translation, eukarya, r 99.47
3qf4_A587 ABC transporter, ATP-binding protein; multidrug tr 99.46
3j16_B 608 RLI1P; ribosome recycling, translation, eukarya, r 99.46
3ozx_A 538 RNAse L inhibitor; ATP binding cassette protein, h 99.41
3ux8_A 670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 99.4
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 99.37
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 99.36
3ux8_A670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 99.28
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 99.25
3g5u_A1284 MCG1178, multidrug resistance protein 1A; P-glycop 99.25
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 99.2
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 99.18
2vf7_A842 UVRA2, excinuclease ABC, subunit A.; DNA-binding p 99.17
2r6f_A972 Excinuclease ABC subunit A; UVRA, nucleotide excis 99.17
2ygr_A993 Uvrabc system protein A; hydrolase, nucleotide exc 99.15
4aby_A415 DNA repair protein RECN; hydrolase, double strand 99.14
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 99.14
4f4c_A1321 Multidrug resistance protein PGP-1; ABC transporte 99.13
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 99.11
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 99.11
3pih_A916 Uvrabc system protein A; hydrolase, ABC ATPase, DN 99.06
3qf7_A365 RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. 99.03
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 98.99
2npi_A460 Protein CLP1; CLP1-PCF11 complex, ATP binding, ter 98.99
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 98.91
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 98.91
4a74_A231 DNA repair and recombination protein RADA; hydrola 98.9
1e69_A322 Chromosome segregation SMC protein; structural mai 98.78
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 98.74
2cvh_A220 DNA repair and recombination protein RADB; filamen 98.72
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 98.68
3qkt_A339 DNA double-strand break repair RAD50 ATPase; RECA- 98.68
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 98.66
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 98.65
2eyu_A261 Twitching motility protein PILT; pilus retraction 98.64
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.61
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 98.61
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 98.58
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 98.58
2og2_A359 Putative signal recognition particle receptor; nuc 98.57
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 98.56
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 98.52
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 98.44
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 98.43
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 98.41
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 98.28
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 98.28
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 98.22
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 98.18
3szr_A 608 Interferon-induced GTP-binding protein MX1; interf 98.16
2ewv_A372 Twitching motility protein PILT; pilus retraction 98.15
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 98.15
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 98.15
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 98.13
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 98.13
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 98.06
2qag_C 418 Septin-7; cell cycle, cell division, GTP-binding, 98.06
2qnr_A301 Septin-2, protein NEDD5; structural genomics conso 98.01
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 98.01
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 97.92
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 97.9
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 97.86
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 97.84
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 97.78
2qag_B 427 Septin-6, protein NEDD5; cell cycle, cell division 97.78
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.77
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 97.76
1f2t_B148 RAD50 ABC-ATPase; DNA double-strand break repair, 97.65
2r6a_A454 DNAB helicase, replicative helicase; replication, 97.64
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 97.63
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 97.54
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 97.51
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 97.36
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 97.35
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 97.34
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 97.32
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 97.29
1vma_A306 Cell division protein FTSY; TM0570, structural gen 97.27
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 97.26
4ad8_A517 DNA repair protein RECN; DNA binding protein, ATPa 97.22
3pih_A 916 Uvrabc system protein A; hydrolase, ABC ATPase, DN 97.18
2ygr_A 993 Uvrabc system protein A; hydrolase, nucleotide exc 97.17
1u94_A356 RECA protein, recombinase A; homologous recombinat 97.14
2r6f_A 972 Excinuclease ABC subunit A; UVRA, nucleotide excis 97.14
3bos_A242 Putative DNA replication factor; P-loop containing 97.13
1udx_A416 The GTP-binding protein OBG; TGS domain, riken str 97.11
2z43_A324 DNA repair and recombination protein RADA; archaea 97.08
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 97.08
2vf7_A 842 UVRA2, excinuclease ABC, subunit A.; DNA-binding p 97.06
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 97.01
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 97.0
3euj_A 483 Chromosome partition protein MUKB, linker; MUKB, M 96.99
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 96.96
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 96.93
1pui_A210 ENGB, probable GTP-binding protein ENGB; structura 96.89
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 96.86
3kta_A182 Chromosome segregation protein SMC; structural mai 96.83
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 96.82
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 96.79
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 96.74
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 96.74
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 96.73
2v1u_A387 Cell division control protein 6 homolog; DNA repli 96.71
1xp8_A366 RECA protein, recombinase A; recombination, radior 96.69
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.65
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 96.65
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 96.65
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 96.61
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 96.61
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 96.61
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 96.59
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.58
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 96.57
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 96.55
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 96.52
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 96.49
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 96.48
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 96.46
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 96.45
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 96.45
3kta_B173 Chromosome segregation protein SMC; structural mai 96.43
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 96.35
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.35
3io5_A333 Recombination and repair protein; storage dimer, i 96.34
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 96.3
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 96.28
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 96.25
2qgz_A308 Helicase loader, putative primosome component; str 96.22
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 96.2
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 96.19
1kag_A173 SKI, shikimate kinase I; transferase, structural g 96.17
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 96.15
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 96.15
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 96.08
1f2t_A149 RAD50 ABC-ATPase; DNA double-strand break repair, 96.06
2vp4_A230 Deoxynucleoside kinase; ATP-binding, DNA synthesis 96.04
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 95.94
2o5v_A359 DNA replication and repair protein RECF; ABC ATPas 95.89
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 95.85
1p9r_A418 General secretion pathway protein E; bacterial typ 95.85
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 95.83
2oap_1511 GSPE-2, type II secretion system protein; hexameri 95.81
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 95.79
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 95.77
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 95.73
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 95.69
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 95.68
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 95.59
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 95.55
3qks_A203 DNA double-strand break repair RAD50 ATPase; RECA- 95.54
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 95.52
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 95.48
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 95.46
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 95.39
1nij_A318 Hypothetical protein YJIA; structural genomics, P- 95.38
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 95.36
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 95.32
1u0l_A301 Probable GTPase ENGC; permutation, OB-fold, zinc-f 95.32
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 95.3
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 95.19
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 95.18
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 95.17
3auy_A371 DNA double-strand break repair RAD50 ATPase; DNA r 95.16
2rcn_A358 Probable GTPase ENGC; YJEQ, circularly permuted, G 95.12
1w1w_A 430 Structural maintenance of chromosome 1; cohesin, c 95.09
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 95.09
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 95.05
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 94.96
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 94.94
1qhl_A227 Protein (cell division protein MUKB); SMC, chromos 94.91
2e87_A357 Hypothetical protein PH1320; GTP-binding, GTPase, 94.87
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 94.84
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 94.81
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 94.8
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 94.79
2dy1_A 665 Elongation factor G; translocation, GTP complex, s 94.79
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 94.74
1t9h_A307 YLOQ, probable GTPase ENGC; N-terminal beta-barrel 94.66
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 94.66
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 94.65
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 94.64
3ice_A422 Transcription termination factor RHO; transcriptio 94.62
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 94.62
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 94.58
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 94.45
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 94.39
3co5_A143 Putative two-component system transcriptional RES 94.38
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 94.38
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 94.34
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 94.33
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 94.25
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 94.25
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 94.21
2chg_A226 Replication factor C small subunit; DNA-binding pr 94.18
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 94.12
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 94.09
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 94.04
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 94.02
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 93.98
3cr8_A552 Sulfate adenylyltranferase, adenylylsulfate kinase 93.97
3auy_A371 DNA double-strand break repair RAD50 ATPase; DNA r 93.89
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 93.86
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 93.76
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 93.73
4ad8_A 517 DNA repair protein RECN; DNA binding protein, ATPa 93.68
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 93.68
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 93.66
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 93.61
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 93.61
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 93.58
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 93.54
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 93.54
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 93.51
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 93.46
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 93.41
3lxx_A239 GTPase IMAP family member 4; structural genomics c 93.36
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 93.35
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 93.34
2p67_A341 LAO/AO transport system kinase; ARGK, structural G 93.29
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 93.24
3pvs_A 447 Replication-associated recombination protein A; ma 93.23
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 93.19
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 93.08
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 92.98
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 92.96
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 92.87
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 92.86
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 92.79
2o5v_A359 DNA replication and repair protein RECF; ABC ATPas 92.78
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 92.77
1ni3_A 392 YCHF GTPase, YCHF GTP-binding protein; structural 92.68
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 92.63
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 92.62
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 92.57
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 92.52
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 92.51
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 92.5
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 92.29
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 92.26
2www_A349 Methylmalonic aciduria type A protein, mitochondri 92.21
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 92.17
1ojl_A304 Transcriptional regulatory protein ZRAR; response 92.16
1tue_A212 Replication protein E1; helicase, replication, E1E 92.11
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 92.02
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 91.97
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 91.96
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 91.85
2wji_A165 Ferrous iron transport protein B homolog; membrane 91.78
1via_A175 Shikimate kinase; structural genomics, transferase 91.74
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 91.72
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 91.72
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 91.64
2vli_A183 Antibiotic resistance protein; transferase, tunica 91.61
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 91.56
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 91.55
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 91.47
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 91.44
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 91.44
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 91.43
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 91.39
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 91.32
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 91.21
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 91.12
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 91.1
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 91.1
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 91.1
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 91.06
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 91.02
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 91.0
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 90.98
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 90.93
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 90.88
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 90.86
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 90.77
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 90.71
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 90.58
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 90.4
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 90.37
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 90.35
3r20_A233 Cytidylate kinase; structural genomics, seattle st 90.0
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 89.99
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 89.94
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 89.83
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 89.83
1ega_A301 Protein (GTP-binding protein ERA); GTPase, RNA-bin 89.81
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 89.75
1m2o_B190 GTP-binding protein SAR1, GTP binding protein; zin 89.64
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 89.42
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 89.33
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 89.24
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 89.15
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 89.09
3e1s_A 574 Exodeoxyribonuclease V, subunit RECD; alpha and be 88.91
3ld9_A223 DTMP kinase, thymidylate kinase; ssgcid, NIH, niai 88.87
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 88.77
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 88.75
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 88.71
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 88.65
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 88.64
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 88.61
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 88.57
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 88.5
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 88.45
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 88.44
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 88.33
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 88.14
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 88.09
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 87.92
1f6b_A198 SAR1; gtpases, N-terminal helix, Mg-containing com 87.76
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 87.7
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 87.63
2qag_A361 Septin-2, protein NEDD5; cell cycle, cell division 87.53
4ag6_A392 VIRB4 ATPase, type IV secretory pathway VIRB4 comp 87.2
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 87.09
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 87.06
1xjc_A169 MOBB protein homolog; structural genomics, midwest 87.01
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 86.87
2j37_W 504 Signal recognition particle 54 kDa protein (SRP54) 86.68
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 86.66
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 86.66
3tlx_A243 Adenylate kinase 2; structural genomics, structura 86.52
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 86.4
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 85.95
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 85.93
2f6r_A281 COA synthase, bifunctional coenzyme A synthase; 18 85.9
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 85.81
3k53_A271 Ferrous iron transport protein B; GTPase fold, hel 85.79
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 85.74
1ltq_A301 Polynucleotide kinase; phosphatase, alpha/beta, P- 85.72
2qtf_A364 Protein HFLX, GTP-binding protein; beta-alpha-barr 85.71
1mky_A439 Probable GTP-binding protein ENGA; GTPase, DER, KH 85.67
2ged_A193 SR-beta, signal recognition particle receptor beta 85.53
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 85.51
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 85.4
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 85.03
1moz_A183 ARL1, ADP-ribosylation factor-like protein 1; GTP- 84.89
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 84.67
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 84.49
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 84.48
1fzq_A181 ADP-ribosylation factor-like protein 3; protein-GD 84.42
1w36_D 608 RECD, exodeoxyribonuclease V alpha chain; recombin 84.31
3v9p_A227 DTMP kinase, thymidylate kinase; ssgcid, STRU geno 84.12
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 84.03
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 83.99
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 83.65
2ocp_A241 DGK, deoxyguanosine kinase; protein-nucleotide com 83.59
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 83.35
1g16_A170 RAS-related protein SEC4; G protein RAB, signaling 83.34
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 83.3
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 83.25
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 83.24
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 83.23
4tmk_A213 Protein (thymidylate kinase); ATP:DTMP phosphotran 83.21
2dby_A 368 GTP-binding protein; GDP, structural genomics, NPP 83.16
1ky3_A182 GTP-binding protein YPT7P; vesicular traffic, GTP 83.11
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 83.04
2h92_A219 Cytidylate kinase; rossmann fold, transferase; HET 82.97
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 82.94
2erx_A172 GTP-binding protein DI-RAS2; GTP hydrolysis, trans 82.93
1svi_A195 GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro 82.85
2fv8_A207 H6, RHO-related GTP-binding protein RHOB; GDP/GTP 82.58
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 82.57
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 82.55
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 82.53
3pqc_A195 Probable GTP-binding protein ENGB; rossmann fold, 82.43
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 82.25
1p5z_B263 DCK, deoxycytidine kinase; nucleoside kinase, P-lo 82.18
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 82.15
2fn4_A181 P23, RAS-related protein R-RAS; GDP/GTP binding, G 81.99
2cxx_A190 Probable GTP-binding protein ENGB; structural geno 81.93
1upt_A171 ARL1, ADP-ribosylation factor-like protein 1; hydr 81.92
2ohf_A 396 Protein OLA1, GTP-binding protein 9; ATPase, GTPas 81.91
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 81.87
2gno_A305 DNA polymerase III, gamma subunit-related protein; 81.79
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 81.6
2y8e_A179 RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti 81.21
3tw8_B181 RAS-related protein RAB-35; longin domain, RAB GTP 81.13
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 81.1
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 81.04
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 80.96
3bc1_A195 RAS-related protein RAB-27A; RAB27, GTPase, RAB, s 80.94
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 80.89
1z0f_A179 RAB14, member RAS oncogene family; RAB GTPase, ves 80.86
2a9k_A187 RAS-related protein RAL-A; bacterial ADP-ribosyltr 80.77
2oil_A193 CATX-8, RAS-related protein RAB-25; G-protein, GDP 80.71
2bme_A186 RAB4A, RAS-related protein RAB4A; GTP-binding prot 80.62
3b1v_A272 Ferrous iron uptake transporter protein B; G prote 80.6
3ihw_A184 Centg3; RAS, centaurin, GTPase, structural genomic 80.46
1m7b_A184 RND3/RHOE small GTP-binding protein; small GTPase, 80.43
3tmk_A216 Thymidylate kinase; phosphotransferase; HET: T5A; 80.41
1nrj_B218 SR-beta, signal recognition particle receptor beta 80.41
3con_A190 GTPase NRAS; structural genomics consortium, SGC, 80.39
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 80.32
1r8s_A164 ADP-ribosylation factor 1; protein transport/excha 80.24
3clv_A208 RAB5 protein, putative; malaria, GTPase, structura 80.23
3t1o_A198 Gliding protein MGLA; G domain containing protein, 80.15
2hxs_A178 RAB-26, RAS-related protein RAB-28; GTPase, signal 80.11
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 80.06
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Back     alignment and structure
Probab=100.00  E-value=3e-131  Score=1254.94  Aligned_cols=783  Identities=35%  Similarity=0.611  Sum_probs=572.6

Q ss_pred             ccCCcccccCCCCCCcCCCCCCCCCCCCCcccccChhhhccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHh
Q 040956          229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGH  308 (1085)
Q Consensus       229 ~~~~~~~~l~p~~irD~~gr~p~dp~YDp~Tl~iP~~~~~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaa  308 (1085)
                      ..|++|+||+|++|||++||||+||+|||||||||+++|+++||||+|||+||++|||+||||||||||||||+||++||
T Consensus        27 ~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~a  106 (1022)
T 2o8b_B           27 WYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGV  106 (1022)
T ss_dssp             CGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHH
T ss_pred             cccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEEehhhHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccEEEecCCCCccccccCccCHHHHHHHHHHcCCeEEEEeecCChHHHhhcc--------CCCceeeeEEEEecCCc
Q 040956          309 KELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH--------TNSVISRKLVNVVTPST  380 (1085)
Q Consensus       309 k~L~L~lT~~~~g~~~~aGfPe~sl~~y~~kLV~~GYKVAVVEQ~Et~~~~k~r~--------~~~vv~Rev~~V~TpGT  380 (1085)
                      ++|||++|.   +++||||||+|+++.|+++||++|||||||||+|||++++.|+        .+++|+||||+||||||
T Consensus       107 ~~L~i~lt~---~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT  183 (1022)
T 2o8b_B          107 SELGLVFMK---GNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGT  183 (1022)
T ss_dssp             HHHCCCCCS---SSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTS
T ss_pred             HhcCeEEec---CCCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEEEECCCe
Confidence            999999984   5799999999999999999999999999999999998754331        13799999999999999


Q ss_pred             cccCCC---C--CCCceEEEEeecCCCCCCCCceEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCC
Q 040956          381 TVDGTI---G--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL  455 (1085)
Q Consensus       381 ~~d~~~---~--~~~~yllaI~E~~~~~~~~~~~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~l  455 (1085)
                      ++|+.+   .  ..++||+||.+.......+...||+||+|++||+|++++|.|+..+++|.+.|.+++|+|||++++.+
T Consensus       184 ~~d~~~~~~l~~~~~n~l~ai~~~~~~~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~Eil~~~~~~  263 (1022)
T 2o8b_B          184 QTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNL  263 (1022)
T ss_dssp             CCCCTTSCCCSCSSCCEEEEEEEEECSCC-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEEEEEEETTTC
T ss_pred             eecccccccccCCCCcEEEEEEEccccccCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCcEEEecCCcc
Confidence            999874   2  35789999987421111123579999999999999999999998899999999999999999998777


Q ss_pred             CHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCCCCC-----Cchhhhhhhhc------------Cch
Q 040956          456 CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS-----SPWSKALENVM------------QHD  518 (1085)
Q Consensus       456 s~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~~-----~~~~~~l~~~~------------~~~  518 (1085)
                      +..+.+.++.....  .+ ...+.+..+||+.......+....||....     ..|+..+..+.            +..
T Consensus       264 ~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (1022)
T 2o8b_B          264 SKETKTILKSSLSC--SL-QEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSE  340 (1022)
T ss_dssp             CHHHHHHHTTTTTT--SE-EEEECBTTTBCCHHHHHHHHHHTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECGGGH
T ss_pred             chHHHHHHHhhhhh--hh-hhhcccchhhcchhhHHhhhhhhhhcccccccccchhhHHHHHHhhcchhhcccccccccH
Confidence            77666555432211  11 111122566787655444444457887542     23555543221            245


Q ss_pred             hHHHHHHHHHHHHHHhcccccc-ccCCc---ccc--------------ccccccccccccee------------------
Q 040956          519 IGFSALGGLISHLSRLMLDDVL-RNGDI---LPY--------------KVYRDCLRMDGQTL------------------  562 (1085)
Q Consensus       519 ~al~Alg~ll~YL~~~~l~~~l-~~~~~---~~~--------------~~~~~~m~lD~~Tl------------------  562 (1085)
                      .+++|+|+||+||+.++++..+ ....+   .+.              .....+|.||+.|+                  
T Consensus       341 ~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g~~~gSL  420 (1022)
T 2o8b_B          341 LALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTL  420 (1022)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCCHHHHHHTTCSSCCSSSSCCCSH
T ss_pred             HHHHHHHHHHHHHHHhCcchhhhccccccccccccccccccccccccccCCCCeEEeCHHHHHhhcCCccCCCCCCCCcH
Confidence            7899999999999998754321 11111   111              12357899998877                  


Q ss_pred             --ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhh-hhhh----c-
Q 040956          563 --YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA-RVQA----S-  634 (1085)
Q Consensus       563 --~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~-~~~~----~-  634 (1085)
                        +||+|+|+||+||||+||++||+|++.|++|||+|++|+++..++..++..|+++|||||+++||+. ....    . 
T Consensus       421 l~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~  500 (1022)
T 2o8b_B          421 LERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHP  500 (1022)
T ss_dssp             HHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCG
T ss_pred             HHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccc
Confidence              8999999999999999999999999999999999999999999999999999999999999999976 2210    0 


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhc-----cCcchhh-------hhcCC
Q 040956          635 SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL---------------LMLMHKEG-----HIIPSLS-------RIFKP  687 (1085)
Q Consensus       635 ~~~~l~~l~~~~l~~~i~~~~~l~~~l~~~~d~---------------l~~l~~~~-----~~i~~l~-------~~~~~  687 (1085)
                      ....+.+.......+.+..+...+.++.....+               +..+....     ..++.+.       +.++.
T Consensus       501 ~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~  580 (1022)
T 2o8b_B          501 DSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDH  580 (1022)
T ss_dssp             GGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCH
T ss_pred             hhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCc
Confidence            000000000000111122222222222211111               11111000     0111111       11110


Q ss_pred             ------Ccc---cC-CCcHHHHHHHHH-------Hh-------hc--------c---------------C-CC-------
Q 040956          688 ------PIF---DG-SDGLDKFLTQFE-------AA-------ID--------S---------------D-FP-------  712 (1085)
Q Consensus       688 ------~~l---~~-~~~l~~~l~~~e-------~~-------i~--------~---------------~-~~-------  712 (1085)
                            ..+   .+ ...++++...+.       ..       +.        .               . ++       
T Consensus       581 ~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~  660 (1022)
T 2o8b_B          581 EKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKS  660 (1022)
T ss_dssp             HHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEE
T ss_pred             hhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEecCceEEEEEehhhhcccCCCceEEee
Confidence                  000   00 112222211111       10       00        0               0 00       


Q ss_pred             ------cccccccchHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccce
Q 040956          713 ------DYQNHDVTDLD--------------AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPL  772 (1085)
Q Consensus       713 ------~~~~~~i~~~~--------------~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~  772 (1085)
                            +|.+.++.+..              .++...+.+.+.++...|..+.+++++|||++|+|.+|.....+||+|.
T Consensus       661 t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~  740 (1022)
T 2o8b_B          661 TKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPV  740 (1022)
T ss_dssp             ETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCE
T ss_pred             eccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCccCCc
Confidence                  11122221111              1122233344445677899999999999999999999974357899999


Q ss_pred             ecCCCCCCcccCCCCCCEEEEEcceeeeeecCC-CCcccccccccCCCC---CCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956          773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-GGLPVPNDILLGEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLA  848 (1085)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~-~~~~V~ndisL~~~~---~~~~g~~~iItGpNgsGKSTLLR~i~~i  848 (1085)
                      +.+..        +..+.|+++++|||++.... ++.+|+||++|+...   +...|++++||||||||||||||++|++
T Consensus       741 ~~~~~--------~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~  812 (1022)
T 2o8b_B          741 ILLPE--------DTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLL  812 (1022)
T ss_dssp             ECCTT--------TSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCC--------CCCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHH
Confidence            97421        11257999999999986432 567999999998751   0012789999999999999999999999


Q ss_pred             HHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 040956          849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA  928 (1085)
Q Consensus       849 ~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~a  928 (1085)
                      .+|+|+|+||||+.+.++++|.||+++|+.|++..+.|+|++||.+++.|+..+++++||||||||+|||+.||.+++++
T Consensus       813 ~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~  892 (1022)
T 2o8b_B          813 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANA  892 (1022)
T ss_dssp             HHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHH
T ss_pred             HHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCC
Q 040956          929 VFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008 (1085)
Q Consensus       929 vle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGl 1008 (1085)
                      ++++|.++.|+++||+|||++++..+++++.|.++||.+......+.  ...+.+.|+|++.+|.|++|||++||+++|+
T Consensus       893 il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~--~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Gl  970 (1022)
T 2o8b_B          893 VVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECED--PSQETITFLYKFIKGACPKSYGFNAARLANL  970 (1022)
T ss_dssp             HHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC---------------CEEEEEESSCCCCCHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCccc--CCCCceEEEeeecCCCCCCCHHHHHHHHcCC
Confidence            99999876689999999999999999999999999998754321111  1346799999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 040956         1009 PQKVVEAASHAALAMKKSI 1027 (1085)
Q Consensus      1009 P~~vi~rA~~~~~~l~~~~ 1027 (1085)
                      |++||++|++++.++|+..
T Consensus       971 p~~vi~rA~~~~~~le~~~  989 (1022)
T 2o8b_B          971 PEEVIQKGHRKAREFEKMN  989 (1022)
T ss_dssp             CHHHHHHHHHHHHHTTSST
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998754
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Back     alignment and structure
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Back     alignment and structure
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Back     alignment and structure
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Back     alignment and structure
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Back     alignment and structure
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} Back     alignment and structure
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Back     alignment and structure
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Back     alignment and structure
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 Back     alignment and structure
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Back     alignment and structure
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Back     alignment and structure
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Back     alignment and structure
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Back     alignment and structure
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Back     alignment and structure
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Back     alignment and structure
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Back     alignment and structure
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Back     alignment and structure
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Back     alignment and structure
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Back     alignment and structure
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Back     alignment and structure
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Back     alignment and structure
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Back     alignment and structure
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Back     alignment and structure
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Back     alignment and structure
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Back     alignment and structure
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1085
d1wb9a2234 c.37.1.12 (A:567-800) DNA repair protein MutS, the 3e-48
d1ewqa2224 c.37.1.12 (A:542-765) DNA repair protein MutS, the 2e-40
d1ewqa4120 d.75.2.1 (A:1-120) DNA repair protein MutS, domain 9e-29
d1wb9a4115 d.75.2.1 (A:2-116) DNA repair protein MutS, domain 8e-28
d1ewqa1275 a.113.1.1 (A:267-541) DNA repair protein MutS, dom 3e-17
d1wb9a1297 a.113.1.1 (A:270-566) DNA repair protein MutS, dom 5e-12
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Length = 234 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  169 bits (429), Expect = 3e-48
 Identities = 88/229 (38%), Positives = 129/229 (56%), Gaps = 14/229 (6%)

Query: 788  GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
             P ++I    HP          + N + L         R L++TGPNMGGKST +R T L
Sbjct: 9    KPGIRITEGRHPVVEQVLNEPFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTAL 63

Query: 848  AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
              ++A +G +VP +   +   D IFTR+GA D + +G STF+VE TETA++L  AT+ SL
Sbjct: 64   IALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSL 123

Query: 908  VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
            V++DE+GRGTST+DG ++A+A    L  +I    LFATHY  LT+       V   H+  
Sbjct: 124  VLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 183

Query: 968  AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
                +          + F++ +  GA  +SYGL VA +AGVP++V++ A
Sbjct: 184  LEHGD---------TIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRA 223
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224 Back     information, alignment and structure
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} Length = 120 Back     information, alignment and structure
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Length = 275 Back     information, alignment and structure
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} Length = 297 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1085
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 100.0
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 100.0
d1wb9a4115 DNA repair protein MutS, domain I {Escherichia col 100.0
d1ewqa4120 DNA repair protein MutS, domain I {Thermus aquatic 100.0
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 99.83
d2awna2232 Maltose transport protein MalK, N-terminal domain 99.82
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 99.82
d1g2912240 Maltose transport protein MalK, N-terminal domain 99.82
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 99.81
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 99.81
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 99.8
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 99.79
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 99.79
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 99.78
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 99.78
d1ewqa1275 DNA repair protein MutS, domain III {Thermus aquat 99.73
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 99.72
d1wb9a1297 DNA repair protein MutS, domain III {Escherichia c 99.7
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 99.69
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 99.68
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 99.67
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 99.66
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 99.66
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 99.64
d2hyda1255 Putative multidrug export ATP-binding/permease pro 99.61
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 99.58
d1wb9a3153 DNA repair protein MutS, domain II {Escherichia co 99.31
d1ewqa3146 DNA repair protein MutS, domain II {Thermus aquati 98.97
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.72
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 98.64
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 96.75
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 96.56
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 96.31
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 96.21
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.07
d1vmaa2213 GTPase domain of the signal recognition particle r 95.96
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 95.83
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 95.81
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 95.7
d1j8yf2211 GTPase domain of the signal sequence recognition p 95.69
d1ls1a2207 GTPase domain of the signal sequence recognition p 95.64
d2qy9a2211 GTPase domain of the signal recognition particle r 95.64
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 95.54
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 95.51
d1okkd2207 GTPase domain of the signal recognition particle r 95.46
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 95.39
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 95.38
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 95.36
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 95.34
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 95.32
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 95.23
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 95.14
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 95.08
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 95.06
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 95.0
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 94.91
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 94.83
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 94.73
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 94.69
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.68
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 94.53
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 94.17
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 94.11
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 94.06
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 94.04
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 94.04
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 93.98
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 93.97
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 93.83
d1w1wa_ 427 Smc head domain {Baker's yeast (Saccharomyces cere 93.83
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 93.79
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 93.78
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 93.76
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 93.41
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 93.35
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 93.23
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 93.15
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 93.14
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 93.09
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 93.0
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 92.78
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 92.55
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 92.53
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 92.48
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 92.38
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 91.78
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 91.75
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 91.4
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 91.38
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 91.26
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 90.92
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 90.89
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 90.74
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 90.74
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 90.69
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 90.62
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 90.48
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 90.44
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 90.12
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 90.02
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 89.97
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 89.88
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 89.83
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 89.79
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 89.72
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 89.5
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 89.46
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 89.31
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 89.19
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 88.99
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 88.91
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 88.89
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 88.8
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 88.55
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 88.52
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 88.49
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 88.29
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 88.23
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 88.17
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 87.83
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 87.77
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 87.62
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 87.59
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 87.58
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 87.33
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 87.0
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 86.88
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 86.52
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 86.43
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 86.22
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 85.88
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 85.83
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 85.73
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 85.73
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 85.48
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 85.47
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 85.29
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 85.21
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 85.17
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 85.05
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 85.01
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 84.56
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 84.37
d2fh5b1207 Signal recognition particle receptor beta-subunit 84.21
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 84.15
d1nrjb_209 Signal recognition particle receptor beta-subunit 84.09
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 84.03
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 83.94
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 83.91
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 83.58
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 83.57
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 83.48
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 83.22
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 82.86
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 82.33
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 82.06
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 82.02
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 81.96
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 81.15
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 80.69
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 80.62
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 80.61
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 80.4
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 80.25
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 80.24
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 80.13
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 80.12
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 80.08
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-51  Score=437.47  Aligned_cols=232  Identities=38%  Similarity=0.618  Sum_probs=205.9

Q ss_pred             cccceecCCCCCCcccCCCCCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh
Q 040956          768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL  847 (1085)
Q Consensus       768 ~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~  847 (1085)
                      ||||++.++            +.++++++|||+++...+..+||||+.++.+     .++++||||||||||||||++|+
T Consensus         1 y~~P~~~~~------------~~l~i~~~rHPlle~~~~~~~VpNdi~l~~~-----~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2           1 YTCPTFIDK------------PGIRITEGRHPVVEQVLNEPFIANPLNLSPQ-----RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CBCCEECSS------------SCEEEEEECCTTHHHHCSSCCCCEEEEECSS-----SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEcCC------------CcEEEEEeECCEEEcccCCCccceeEEECCC-----ceEEEEeccCchhhHHHHHHHHH
Confidence            799999743            5799999999998654456799999999854     57999999999999999999999


Q ss_pred             HHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 040956          848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY  927 (1085)
Q Consensus       848 i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~  927 (1085)
                      +++|||+|+||||+.+.++++|+||++++..|++..+.|+|+.||.+++.|++.+++++|||+||+|+||++.||.++++
T Consensus        64 ~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~  143 (234)
T d1wb9a2          64 IALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAW  143 (234)
T ss_dssp             HHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHH
T ss_pred             HHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcC
Q 040956          928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAG 1007 (1085)
Q Consensus       928 avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laG 1007 (1085)
                      +++++|..+.++.+|++||++++.......+.+.++||.+..+         ++.+.|+|+|.+|++..|||+++|+++|
T Consensus       144 a~l~~l~~~~~~~~i~tTH~~~l~~~~~~~~~v~~~~~~~~~~---------~~~i~f~YkL~~G~~~~s~ai~iA~~~G  214 (234)
T d1wb9a2         144 ACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH---------GDTIAFMHSVQDGAASKSYGLAVAALAG  214 (234)
T ss_dssp             HHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEE---------TTEEEEEEEEEESCCSSCCHHHHHHHTT
T ss_pred             HhhhhhhccccceEEEecchHHHhhhhhcccceEEEEEEEeec---------cCcceEEEEecCCCCCCcHHHHHHHHhC
Confidence            9999998876789999999999998888889999999998753         5789999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 040956         1008 VPQKVVEAASHAALAMKK 1025 (1085)
Q Consensus      1008 lP~~vi~rA~~~~~~l~~ 1025 (1085)
                      +|++||+||+++++++|.
T Consensus       215 lp~~ii~~A~~i~~~lE~  232 (234)
T d1wb9a2         215 VPKEVIKRARQKLRELES  232 (234)
T ss_dssp             CCHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHhc
Confidence            999999999999998864
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ewqa3 c.55.6.1 (A:121-266) DNA repair protein MutS, domain II {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure