Citrus Sinensis ID: 041015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MDTDEKNSSSYSPSSTPTSKKSSKSQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAAAAAIFDSPRRIEANNDTQSTCHDENKNSADHHDHSSSDDSDSAWFDHLPDLSLEGDRKKIGANISHGAC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEcccHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEcEEcccccc
Coil and Loop (DISEMBL)
mdtdeknsssyspsstptskkssksQQANKElmsptidnenesnkKICNNganalnkyptyrgvrmrswgkwvSEIRQPrkksriwlgsfptAEMAARAHDVAALAIKghsahlnfpeladelprpasaapKDIQAAAAKAAAAAifdsprrieanndtqstchdenknsadhhdhsssddsdsawfdhlpdlslegdrkkiganishgac
Flexible Loop (DISEMBL)
mdtdeknsssyspsstptskkssksqqANKELmsptidnenesnKKICNNganalnkyptyrgvrmrswgkwvseirqprkksriWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAAAAAIFDSPRRIEANNDTQSTCHDENKNSADHHDHSSSDDSDSAWFDHLPDLslegdrkkiganishgac
Low Complexity Region (SEG)
MDTDEKNsssyspsstptskkssksQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPasaapkdiqaaaakaaaaaifdspRRIEANNDTQSTCHDENKNSAdhhdhsssddsdsAWFDHLPDLSLEGDRKKIGANISHGAC
Disordered region (IsUnstruct)
***********************************************CNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNF***********************************************************************************************
Disordered Region (DISOPRED)
*************************************************************RGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELP*************AA**********************************************WFDHLPDLSLEGDRKKIGAN*SHGAC
Disordered Region (DISEMBL)
********************************MSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELP********************AIFDSPRRIEANN**************************SAWFDHLPDLSLEGDRKKIGANISHGAC
Disordered Region (DISPRO)
*******************************************************NKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAAAA*********************************SSDDSDSAWFDHLPDLSLEGDRKKIGANISHG*C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTDEKNSSSYSPSSTPTSKKSSKSQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAAAAAIFDSPRRIEANNDTQSTCHDENKNSADHHDHSSSDDSDSAWFDHLPDLSLEGDRKKIGANISHGAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q8LBQ7	295	Ethylene-responsive trans	yes	no	0.431	0.308	0.791	1e-38
Q9M080	221	Ethylene-responsive trans	no	no	0.412	0.393	0.781	6e-37
Q9LYD3	236	Dehydration-responsive el	no	no	0.473	0.423	0.702	3e-36
Q9SUK8	179	Ethylene-responsive trans	no	no	0.535	0.631	0.652	4e-36
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.630	0.685	0.626	5e-35
Q39127	218	Ethylene-responsive trans	no	no	0.473	0.458	0.666	5e-35
Q9M210	256	Ethylene-responsive trans	no	no	0.379	0.312	0.827	4e-34
Q9LU18	236	Ethylene-responsive trans	no	no	0.374	0.334	0.797	6e-33
Q52QU1	225	Ethylene-responsive trans	no	no	0.507	0.475	0.675	2e-32
Q1ECI2	192	Ethylene-responsive trans	no	no	0.672	0.739	0.456	4e-29

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query: 53  NALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSA 112
           N  +K+PTYRGVRMRSWGKWVSEIR+PRKKSRIWLG++PTAEMAARAHDVAALAIKG +A
Sbjct: 92  NGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTA 151

Query: 113 HLNFPELADELPRPASAAPKDIQAAAAKAAA 143
           +LNFP+LA ELPRP + +PKDIQAAA+ AA 
Sbjct: 152 YLNFPKLAGELPRPVTNSPKDIQAAASLAAV 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  154 bits (388), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 77/87 (88%)

Query: 56  NKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLN 115
           NK P YRGVRMRSWGKWVSEIR+PRKKSRIWLG+FPTAEMA RAHDVAA++IKG SA LN
Sbjct: 14  NKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILN 73

Query: 116 FPELADELPRPASAAPKDIQAAAAKAA 142
           FPEL+  LPRP S +P+D++AAA KAA
Sbjct: 74  FPELSKLLPRPVSLSPRDVRAAATKAA 100

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 83/101 (82%), Gaps = 1/101 (0%)

Query: 42  ESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHD 101
           E ++K    G ++  K+P YRGVRMR+WGKWVSEIR+PRKKSRIWLG+FPT EMAARAHD
Sbjct: 33  EQSEKKTKRGRDS-GKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHD 91

Query: 102 VAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAA 142
           VAAL+IKG +A LNFPELAD  PRP S +P+DIQ AA KAA
Sbjct: 92  VAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAA 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  150 bits (380), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 87/115 (75%), Gaps = 2/115 (1%)

Query: 21  KSSKSQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPR 80
           + S S ++ + L SP  +   +S+K    N    ++K P +RGVRMR WGKWVSEIR+PR
Sbjct: 2   QDSSSHESQRNLRSPVPEKTGKSSK--TKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPR 59

Query: 81  KKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQ 135
           KKSRIWLG+F T EMAARAHDVAALAIKG SAHLNFPELA  LPRPASA PKDIQ
Sbjct: 60  KKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 103/142 (72%), Gaps = 9/142 (6%)

Query: 54  ALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAH 113
            ++K+P +RGVRMR WGKWVSEIR+P+KKSRIWLG+F TAEMAARAHDVAALAIKG SAH
Sbjct: 38  VVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAH 97

Query: 114 LNFPELADELPRPASAAPKDIQAAAAKAAAAAIFDSPRRIEANNDTQSTCHDENKNSADH 173
           LNFPELA  LPRPASA PKDIQAAAA AAAA   D    +E ++ + S    E  + A  
Sbjct: 98  LNFPELAYHLPRPASADPKDIQAAAAAAAAAVAID--MDVETSSPSPSPTVTETSSPA-- 153

Query: 174 HDHSSSDDSDSAWFDHLPDLSL 195
              + SDD+    F  LPDL L
Sbjct: 154 -MIALSDDA----FSDLPDLLL 170

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 84/105 (80%), Gaps = 5/105 (4%)

Query: 38  DNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAA 97
           +NE E  K + ++G     K+P YRGVR R+WGKWVSEIR+PRKKSRIWLG+FP+ EMAA
Sbjct: 18  ENEEEKKKPVKDSG-----KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAA 72

Query: 98  RAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAA 142
           RAHDVAAL+IKG SA LNFP+LA   PRP+S +P+DIQ AA KAA
Sbjct: 73  RAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAA 117

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 73/81 (90%), Gaps = 1/81 (1%)

Query: 56  NKYPT-YRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHL 114
           NK PT YRGVRMRSWGKWVSEIR+PRKKSRIWLG++PTAEMAARAHDVAALAIKG+S  L
Sbjct: 65  NKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFL 124

Query: 115 NFPELADELPRPASAAPKDIQ 135
           NFPEL+  LPRP S +PKDIQ
Sbjct: 125 NFPELSGLLPRPVSCSPKDIQ 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  140 bits (353), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 70/79 (88%)

Query: 57  KYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNF 116
           ++P YRGVRMRSWGKWVSEIRQPRKK+RIWLG+F TA+MAARAHDVAAL IKG SA LNF
Sbjct: 57  QHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNF 116

Query: 117 PELADELPRPASAAPKDIQ 135
           PELA   PRPAS++P DIQ
Sbjct: 117 PELASLFPRPASSSPHDIQ 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QU1|ERF42_ARATH Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 84/108 (77%), Gaps = 1/108 (0%)

Query: 60  TYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPEL 119
            YRG RMRSWGKWVSEIR+PRKKSRIWLG+FPTAEMAARAHDVAAL+IKG SA LNFPEL
Sbjct: 25  VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84

Query: 120 ADELPRPASAAPKDIQAAAAKAAAAAIFDSPRRIEANND-TQSTCHDE 166
           AD LPRP S + +DIQAAAA+AA       P  ++ ++   Q+ C  E
Sbjct: 85  ADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTPLQTRCDTE 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 97/171 (56%), Gaps = 29/171 (16%)

Query: 35  PTIDNE---NESNKKICNNGA----NALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWL 87
           P  +NE     S  K C  G     ++  ++P Y GVR R WGKWVSEIR+PRKKSRIWL
Sbjct: 12  PVTNNEPTATASAVKSCGGGGKETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWL 71

Query: 88  GSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAAAAAIF 147
           GSFP  EMAA+A+DVAA  +KG  A LNFPE  ++LPRP++  P+DIQ AAAKAA A   
Sbjct: 72  GSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAANAVKI 131

Query: 148 DSPRRIEANNDTQSTCHDENKNSADHHDHSSSDDSDSAWFD-HLPDLSLEG 197
                I+  +D                D +  DD D  W    LP+L + G
Sbjct: 132 -----IKMGDD----------------DVAGIDDGDDFWEGIELPELMMSG 161

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
255550908	270	Transcriptional factor TINY, putative [R	0.587	0.459	0.669	3e-39
224138644	221	AP2/ERF domain-containing transcription	0.535	0.511	0.700	1e-38
255549882	241	Transcriptional factor TINY, putative [R	0.521	0.456	0.690	4e-38
356504603	287	PREDICTED: ethylene-responsive transcrip	0.549	0.404	0.655	1e-37
255541118	276	Transcriptional factor TINY, putative [R	0.824	0.630	0.550	1e-37
255647266	287	unknown [Glycine max]	0.549	0.404	0.655	2e-37
297824531	290	hypothetical protein ARALYDRAFT_483623 [	0.563	0.410	0.644	2e-37
297811277	236	hypothetical protein ARALYDRAFT_487996 [	0.549	0.491	0.622	3e-37
21592664	295	putative AP2 domain transcription factor	0.431	0.308	0.791	7e-37
15225381	295	ethylene-responsive transcription factor	0.431	0.308	0.791	7e-37

>gi|255550908|ref|XP_002516502.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544322|gb|EEF45843.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 100/127 (78%), Gaps = 3/127 (2%)

Query: 22  SSKSQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRK 81
           +SK+Q+  + L+    D E+ +NKKI        NK+P YRGVRMR+WGKWVSEIR+PRK
Sbjct: 17  ASKTQR-QEALVEEQQDPESPTNKKIKR--IRDTNKHPVYRGVRMRNWGKWVSEIREPRK 73

Query: 82  KSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKA 141
           KSRIWLG+FPT EMAARAHDVAAL+IKG+SA LNFPELAD LPRPAS AP+D+Q AAAKA
Sbjct: 74  KSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPASLAPRDVQIAAAKA 133

Query: 142 AAAAIFD 148
           A    FD
Sbjct: 134 AQMDTFD 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138644|ref|XP_002326654.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372079|gb|ABQ62971.1| TINY-like protein [Populus trichocarpa] gi|222833976|gb|EEE72453.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/117 (70%), Positives = 95/117 (81%), Gaps = 4/117 (3%)

Query: 19  SKKSSKSQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQ 78
           S+K  +SQ ++K    P   N NESNKK   +G NA  ++P+YRGVRMR WGKWVSEIRQ
Sbjct: 4   SRKQDQSQDSSKRNQDPK--NNNESNKK-AKSGGNA-GRHPSYRGVRMRQWGKWVSEIRQ 59

Query: 79  PRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQ 135
           P+KKSRIWLG+FPT EMAARAHDVAAL IKGHSAHLNFPE+A E PRPAS++PKDIQ
Sbjct: 60  PKKKSRIWLGTFPTPEMAARAHDVAALTIKGHSAHLNFPEIAHEFPRPASSSPKDIQ 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549882|ref|XP_002515992.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544897|gb|EEF46412.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 89/110 (80%)

Query: 39  NENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAAR 98
           +E   +K+ C   A   +K+P YRGVRMRSWGKWVSEIR+PRKKSRIWLG+FPTAEMAAR
Sbjct: 27  SEGPVDKRSCLKRARDCSKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAAR 86

Query: 99  AHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAAAAAIFD 148
           AHDVAA++IKG+SA LNFP+L D LPRP S  P+DIQ AAAKAA+   FD
Sbjct: 87  AHDVAAMSIKGNSAILNFPQLIDSLPRPVSLMPRDIQVAAAKAASMVEFD 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504603|ref|XP_003521085.1| PREDICTED: ethylene-responsive transcription factor ERF034-like [Glycine max]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 98/119 (82%), Gaps = 3/119 (2%)

Query: 19  SKKSSKSQQANKELMSPTIDNENESN--KKICNNGANALNKYPTYRGVRMRSWGKWVSEI 76
           +K+ +K+ Q +  +   +++N+ +S   KK   + +N  N +PTYRGVRMR+WGKWVSEI
Sbjct: 72  TKEHTKTPQNDSTISQTSLENKEDSKECKKRQRDNSNQ-NHHPTYRGVRMRNWGKWVSEI 130

Query: 77  RQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQ 135
           R+PRKKSRIWLG++PTAEMAARAHDVAALAIKGHSA+LNFPELA ELPRPAS +PKDIQ
Sbjct: 131 REPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPASTSPKDIQ 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541118|ref|XP_002511623.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223548803|gb|EEF50292.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 127/189 (67%), Gaps = 15/189 (7%)

Query: 25  SQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSR 84
           S +A+++ +    +NE+   K+  +N  NA  K+PTYRGVRMRSWGKWVSEIR+PRKKSR
Sbjct: 59  STKADRQELESGNNNESSRKKQKSDNNENA--KHPTYRGVRMRSWGKWVSEIREPRKKSR 116

Query: 85  IWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAAAA 144
           IWLG++PTAEMAARAHDVAALAIKG+SA+LNFPELA  LPRPA+ APKDIQ AAAKAA A
Sbjct: 117 IWLGTYPTAEMAARAHDVAALAIKGNSAYLNFPELALGLPRPATKAPKDIQVAAAKAATA 176

Query: 145 AIF------DSPRRIEANNDTQSTCHDENKN-----SADHHDHSSSDDSDSAWFDHLPDL 193
             F      D    +     + S   D  +      S      ++S+DSD   FD LPDL
Sbjct: 177 VNFLEKTQSDVEAGMSQAEGSSSLVIDNTRESTSSPSTATTIATTSNDSDDTLFD-LPDL 235

Query: 194 SLEG-DRKK 201
            +EG DR K
Sbjct: 236 FVEGIDRHK 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647266|gb|ACU24100.1| unknown [Glycine max]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 98/119 (82%), Gaps = 3/119 (2%)

Query: 19  SKKSSKSQQANKELMSPTIDNENESN--KKICNNGANALNKYPTYRGVRMRSWGKWVSEI 76
           +K+ +K+ Q +  +   +++N+ +S   KK   + +N  N +PTYRGVRMR+WGKWVSEI
Sbjct: 72  TKEHTKTPQNDSTISQTSLENKEDSKECKKRQRDNSNQ-NHHPTYRGVRMRNWGKWVSEI 130

Query: 77  RQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQ 135
           R+PRKKSRIWLG++PTAEMAARAHDVAALAIKGHSA+LNFPELA ELPRPAS +PKDIQ
Sbjct: 131 REPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPASTSPKDIQ 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824531|ref|XP_002880148.1| hypothetical protein ARALYDRAFT_483623 [Arabidopsis lyrata subsp. lyrata] gi|297325987|gb|EFH56407.1| hypothetical protein ARALYDRAFT_483623 [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 94/121 (77%), Gaps = 2/121 (1%)

Query: 23  SKSQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKK 82
           SK +   + L S   D+ N+   K      +  +K+PTYRGVRMRSWGKWVSEIR+PRKK
Sbjct: 60  SKRKATRRSLASVEDDDRNDGGGK--RRKTSGGDKHPTYRGVRMRSWGKWVSEIREPRKK 117

Query: 83  SRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQAAAAKAA 142
           SRIWLG++PTAEMAARAHDVAALAIKG +A+LNFPEL+ ELPRP + +PKDIQAAA+ AA
Sbjct: 118 SRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPELSGELPRPVTNSPKDIQAAASLAA 177

Query: 143 A 143
            
Sbjct: 178 V 178

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811277|ref|XP_002873522.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata] gi|297319359|gb|EFH49781.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 95/127 (74%), Gaps = 11/127 (8%)

Query: 16  TPTSKKSSKSQQANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSE 75
            P S+  S SQ++  E       +EN+  K++ ++G     K+P YRGVRMR+WGKWVSE
Sbjct: 18  VPNSESDSVSQKSKAE------QSENKKTKRVIDSG-----KHPVYRGVRMRNWGKWVSE 66

Query: 76  IRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPRPASAAPKDIQ 135
           IR+PRKKSRIWLG+FPT EMAARAHDVAAL+IKG SA LNFPELAD  PRP S +P+DIQ
Sbjct: 67  IREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPELADSFPRPVSLSPRDIQ 126

Query: 136 AAAAKAA 142
            AA KAA
Sbjct: 127 TAALKAA 133

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592664|gb|AAM64613.1| putative AP2 domain transcription factor [Arabidopsis thaliana]

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query: 53  NALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSA 112
           N  +K+PTYRGVRMRSWGKWVSEIR+PRKKSRIWLG++PTAEMAARAHDVAALAIKG +A
Sbjct: 92  NGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTA 151

Query: 113 HLNFPELADELPRPASAAPKDIQAAAAKAAA 143
           +LNFP+LA ELPRP + +PKDIQAAA+ AA 
Sbjct: 152 YLNFPKLAGELPRPVTNSPKDIQAAASLAAV 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225381|ref|NP_182021.1| ethylene-responsive transcription factor ERF034 [Arabidopsis thaliana] gi|148839467|sp|Q8LBQ7.2|ERF34_ARATH RecName: Full=Ethylene-responsive transcription factor ERF034 gi|20196923|gb|AAM14835.1| putative AP2 domain transcription factor [Arabidopsis thaliana] gi|30793877|gb|AAP40391.1| putative AP2 domain transcription factor [Arabidopsis thaliana] gi|30794084|gb|AAP40485.1| putative AP2 domain transcription factor [Arabidopsis thaliana] gi|110739089|dbj|BAF01461.1| putative AP2 domain transcription factor [Arabidopsis thaliana] gi|330255394|gb|AEC10488.1| ethylene-responsive transcription factor ERF034 [Arabidopsis thaliana]

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query: 53  NALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSA 112
           N  +K+PTYRGVRMRSWGKWVSEIR+PRKKSRIWLG++PTAEMAARAHDVAALAIKG +A
Sbjct: 92  NGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTA 151

Query: 113 HLNFPELADELPRPASAAPKDIQAAAAKAAA 143
           +LNFP+LA ELPRP + +PKDIQAAA+ AA 
Sbjct: 152 YLNFPKLAGELPRPVTNSPKDIQAAASLAAV 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.407	0.291	0.727	4.9e-30
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.459	0.541	0.646	1.6e-29
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.454	0.406	0.649	7.1e-29
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.407	0.335	0.724	1.5e-28
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.336	0.365	0.816	5e-28
TAIR|locus:2134128	221	AT4G32800 [Arabidopsis thalian	0.331	0.316	0.828	1.7e-27
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.393	0.380	0.670	2.8e-27
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.308	0.288	0.892	3.5e-27
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.459	0.411	0.608	5.7e-27
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.436	0.377	0.621	2.2e-25

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 64/88 (72%), Positives = 74/88 (84%)

Query:    38 DNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAA 97
             D++N    K      N  +K+PTYRGVRMRSWGKWVSEIR+PRKKSRIWLG++PTAEMAA
Sbjct:    79 DDQNGGGGK--RRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAA 136

Query:    98 RAHDVAALAIKGHSAHLNFPELADELPR 125
             RAHDVAALAIKG +A+LNFP+LA ELPR
Sbjct:   137 RAHDVAALAIKGTTAYLNFPKLAGELPR 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 64/99 (64%), Positives = 75/99 (75%)

Query:    27 QANKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIW 86
             ++ + L SP  +   +S+K    N    ++K P +RGVRMR WGKWVSEIR+PRKKSRIW
Sbjct:     8 ESQRNLRSPVPEKTGKSSKT--KNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIW 65

Query:    87 LGSFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPR 125
             LG+F T EMAARAHDVAALAIKG SAHLNFPELA  LPR
Sbjct:    66 LGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPR 104

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 63/97 (64%), Positives = 76/97 (78%)

Query:    29 NKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLG 88
             N E  S +  ++ E ++K    G ++  K+P YRGVRMR+WGKWVSEIR+PRKKSRIWLG
Sbjct:    20 NSESDSVSDKSKAEQSEKKTKRGRDS-GKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 78

Query:    89 SFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPR 125
             +FPT EMAARAHDVAAL+IKG +A LNFPELAD  PR
Sbjct:    79 TFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPR 115

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 63/87 (72%), Positives = 72/87 (82%)

Query:    40 ENESNKKICNNGANALNKYPT-YRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAAR 98
             +N+S  K   +  +  NK PT YRGVRMRSWGKWVSEIR+PRKKSRIWLG++PTAEMAAR
Sbjct:    49 DNDSGGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAAR 108

Query:    99 AHDVAALAIKGHSAHLNFPELADELPR 125
             AHDVAALAIKG+S  LNFPEL+  LPR
Sbjct:   109 AHDVAALAIKGNSGFLNFPELSGLLPR 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/71 (81%), Positives = 65/71 (91%)

Query:    55 LNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHL 114
             ++K+P +RGVRMR WGKWVSEIR+P+KKSRIWLG+F TAEMAARAHDVAALAIKG SAHL
Sbjct:    39 VSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHL 98

Query:   115 NFPELADELPR 125
             NFPELA  LPR
Sbjct:    99 NFPELAYHLPR 109

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2134128 AT4G32800 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 58/70 (82%), Positives = 63/70 (90%)

Query:    56 NKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLN 115
             NK P YRGVRMRSWGKWVSEIR+PRKKSRIWLG+FPTAEMA RAHDVAA++IKG SA LN
Sbjct:    14 NKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILN 73

Query:   116 FPELADELPR 125
             FPEL+  LPR
Sbjct:    74 FPELSKLLPR 83

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 59/88 (67%), Positives = 70/88 (79%)

Query:    38 DNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAA 97
             +NE E  K + ++G     K+P YRGVR R+WGKWVSEIR+PRKKSRIWLG+FP+ EMAA
Sbjct:    18 ENEEEKKKPVKDSG-----KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAA 72

Query:    98 RAHDVAALAIKGHSAHLNFPELADELPR 125
             RAHDVAAL+IKG SA LNFP+LA   PR
Sbjct:    73 RAHDVAALSIKGASAILNFPDLAGSFPR 100

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 58/65 (89%), Positives = 61/65 (93%)

Query:    61 YRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELA 120
             YRG RMRSWGKWVSEIR+PRKKSRIWLG+FPTAEMAARAHDVAAL+IKG SA LNFPELA
Sbjct:    26 YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELA 85

Query:   121 DELPR 125
             D LPR
Sbjct:    86 DFLPR 90

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query:    29 NKELMSPTIDNENESNKKICNNGANALNKYPTYRGVRMRSWGKWVSEIRQPRKKSRIWLG 88
             ++E   P  +N  +  +   +  +++  ++P YRGVRMRSWGKWVSEIRQPRKK+RIWLG
Sbjct:    29 SEEEAPPRNNNTRKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLG 88

Query:    89 SFPTAEMAARAHDVAALAIKGHSAHLNFPELADELPR 125
             +F TA+MAARAHDVAAL IKG SA LNFPELA   PR
Sbjct:    89 TFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPR 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 59/95 (62%), Positives = 69/95 (72%)

Query:    34 SPTIDNENESNKKICNNGANALNKY---PTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSF 90
             SP  + E+  + +  ++  N   +    P YRGVRMR+WGKWVSEIR+PRKKSRIWLG+F
Sbjct:    13 SPVPEEEDHHHHQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTF 72

Query:    91 PTAEMAARAHDVAALAIKGHSAHLNFPELADELPR 125
              T EMAARAHD AAL IKG SA LNFPELA  LPR
Sbjct:    73 STPEMAARAHDAAALTIKGTSAVLNFPELATYLPR 107

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBQ7	ERF34_ARATH	No assigned EC number	0.7912	0.4312	0.3084	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__2683__AT2G44940.1 annotation not avaliable (290 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-31
pfam00847	53	pfam00847, AP2, AP2 domain	3e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  114 bits (287), Expect = 2e-33
 Identities = 38/59 (64%), Positives = 43/59 (72%)

Query: 61  YRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPEL 119
           YRGVR R WGKWV+EIR P K  R+WLG+F TAE AARA+D AA   +G SA LNFP  
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  108 bits (271), Expect = 4e-31
 Identities = 39/59 (66%), Positives = 45/59 (76%)

Query: 61  YRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPEL 119
           YRGVR R WGKWV+EIR P    RIWLG+F TAE AARA+D AAL ++G SA LNFP+ 
Sbjct: 3   YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 59  PTYRGVRMR-SWGKWVSEIRQP--RKKSRIWLGSFPTAEMAARAHDVAALAIKG 109
             Y+GVR    WG+WV+EIR P  +KK R  LG+F T E AARA   A L ++G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.87
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
PHA00280	121	putative NHN endonuclease	99.53
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.18

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.87  E-value=3.6e-22  Score=139.99  Aligned_cols=61  Identities=64%  Similarity=1.085  Sum_probs=57.9

Q ss_pred             CceeEEEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 041015           59 PTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPEL  119 (211)
Q Consensus        59 S~yRGVr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~lNFp~s  119 (211)
                      |+||||+++++|||+|+|+++..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999998999999999966699999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=3.1e-21  Score=136.89  Aligned_cols=62  Identities=61%  Similarity=1.052  Sum_probs=59.2

Q ss_pred             ceeEEEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 041015           60 TYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELAD  121 (211)
Q Consensus        60 ~yRGVr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~lNFp~s~~  121 (211)
                      +|+||+++++|||+|+|++|.+++++|||+|+|+||||+|||.++++++|..+.+|||.+.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999999899999999999999999999999999999999999999999999999998755

>PHA00280 putative NHN endonuclease

Probab=99.53  E-value=1.4e-14  Score=115.74  Aligned_cols=56  Identities=13%  Similarity=0.123  Sum_probs=51.1

Q ss_pred             CCCCCceeEEEeCCC-CcEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 041015           55 LNKYPTYRGVRMRSW-GKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAH  113 (211)
Q Consensus        55 ~~~~S~yRGVr~r~~-GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~  113 (211)
                      .+++|+|+||+|++. |||+|+|++  .||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus        63 ~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         63 KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            378899999998854 999999999  999999999999999999997 77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.18  E-value=4.2e-11  Score=81.86  Aligned_cols=52  Identities=31%  Similarity=0.489  Sum_probs=45.4

Q ss_pred             CceeEEEeCC-CCcEEEEEeeCCC---CeEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 041015           59 PTYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGSFPTAEMAARAHDVAALAIKGH  110 (211)
Q Consensus        59 S~yRGVr~r~-~GkW~A~I~~p~~---~kri~LGtF~T~EeAArAYD~Aal~l~G~  110 (211)
                      |+|+||++++ .++|+|+|+++..   +++++||.|++++||+++|+.+.+.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999886 4999999999421   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-12
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-12

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 61  YRGVRMRSWGKWVSEIRQPRK-KSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFP 117
           YRGVR R WGK+ +EIR P K  +R+WLG+F TAE AA A+D AA  ++G  A LNFP
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 61  YRGVRMRSWGKWVSEIRQPRKK-SRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFP 117
           YRGVR R WGK+ +EIR P K  +R+WLG+F TAE AA A+D AA  ++G  A LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-28

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  100 bits (251), Expect = 3e-28
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 61  YRGVRMRSWGKWVSEIRQPRKK-SRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPE 118
           YRGVR R WGK+ +EIR P K  +R+WLG+F TAE AA A+D AA  ++G  A LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	84.25
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.79

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=1.3e-26  Score=164.28  Aligned_cols=60  Identities=57%  Similarity=0.945  Sum_probs=57.3

Q ss_pred             ceeEEEeCCCCcEEEEEeeCCC-CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 041015           60 TYRGVRMRSWGKWVSEIRQPRK-KSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPEL  119 (211)
Q Consensus        60 ~yRGVr~r~~GkW~A~I~~p~~-~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~lNFp~s  119 (211)
                      +||||++++||||+|+|++|.+ |++||||+|+|+||||+|||.|+++++|..+.||||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999999999999999999974 79999999999999999999999999999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=84.25  E-value=0.7  Score=33.51  Aligned_cols=28  Identities=21%  Similarity=0.306  Sum_probs=22.3

Q ss_pred             CCCCceeEEEeCCC-CcEEEEEeeCCCCeEE
Q 041015           56 NKYPTYRGVRMRSW-GKWVSEIRQPRKKSRI   85 (211)
Q Consensus        56 ~~~S~yRGVr~r~~-GkW~A~I~~p~~~kri   85 (211)
                      ...|+|.||+|.+. +.|+|.-.+  +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            45789999999865 999999998  56554

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.79  E-value=0.24  Score=39.75  Aligned_cols=38  Identities=8%  Similarity=0.015  Sum_probs=29.3

Q ss_pred             eeEEEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHHHHH
Q 041015           61 YRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHD  101 (211)
Q Consensus        61 yRGVr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD  101 (211)
                      ++||.+...++|.+.|..  . +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            467755223678899988  5 5678999999999999965

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-30

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  104 bits (260), Expect = 3e-30
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 61  YRGVRMRSWGKWVSEIRQPRKK-SRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPE 118
           YRGVR R WGK+ +EIR P K  +R+WLG+F TAE AA A+D AA  ++G  A LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=2.5e-26  Score=161.63  Aligned_cols=60  Identities=55%  Similarity=0.932  Sum_probs=56.1

Q ss_pred             ceeEEEeCCCCcEEEEEeeCC-CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 041015           60 TYRGVRMRSWGKWVSEIRQPR-KKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPEL  119 (211)
Q Consensus        60 ~yRGVr~r~~GkW~A~I~~p~-~~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~lNFp~s  119 (211)
                      .||||+++++|||+|+|++|. ++++||||+|+|+||||+|||+|+++++|..+.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            499999998999999999974 668999999999999999999999999999999999964