Citrus Sinensis ID: 041099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MLSNCEKMVVISSTTNEWPQNHQIDEKNLMASTGRVMDKAGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANNSIDGSNPSAAANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFGSSSSSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWNVECQNQMEQIGLADPSLYWNSTSSVGAWHDPSNIGSSVTSLI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEcEccccccccccccccccccccHHHHHHHcHHHHHHHcccccccccccccccccccccHHHcEEccccccccccccccccHHcEEccccccccccccccHHHHHHcccccccEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLSNCEKMVVISSttnewpqnhqideknlMASTgrvmdkagqeppqqqqqpplkcprcdssntkfcyynnyslsqprhfCKACKrywtrggtlrnvpvgggcrknkrvkrpasannsidgsnpsaaanpnnphsqrqidisstsnhinplffglstnpsdmnlpfstfnsrvvssldtisgydlqpqlnalglgfssglimsntdvgdcnyrngfnpnkqIQEVVTSSnsllssyptfgssssspTIASLLASSlhqpkfmngvvkssteapnhfnnnlaSFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWNVECQNQMeqigladpslywnstssvgawhdpsnigssvtsli
Flexible Loop (DISEMBL)
MLSNCEKMVVISsttnewpqnhqIDEKNLMASTGRVMDKAGqeppqqqqqpplkCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWtrggtlrnvpvgggcrknkrvkrpasannsidgsnpsaaanpnnPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFGSSSSSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWNVECQNQMEQIGLADPSLYWNSTSsvgawhdpsnigssvtsli
Low Complexity Region (SEG)
MLSNCEKMVVISSTTNEWPQNHQIDEKNLMASTGRVMDKAGqeppqqqqqppLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANNSIDGsnpsaaanpnnphsQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNsllssyptfgsssssptiasllasslHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTAnnnnnnGEAARTGMMKEVKAEEGQRRMDWNVECQNQMEQIGLADPSLYWNSTSSVGAWHDPSNIGSSVTSLI
Disordered region (IsUnstruct)
*************************************************************NTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGC********************************************INPLFFGLST****MNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNP****************************************************************************************************WNVECQNQMEQIGLADPSLYWNSTSSVGAW**************
Disordered Region (DISOPRED)
********************************************************RCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRN**************************************************************************************************************************************************************************************************************************************************WNSTSSVGAWHDPSNIGS***SLI
Disordered Region (DISEMBL)
MLSNCEKMVVISSTTNEWPQNHQIDEKNLMASTGRV********************RCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANNSIDGSNPSAAANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSS***********TIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWNVECQNQMEQIGLADPSLYWNSTSSVGAWHDPSNI********
Disordered Region (DISPRO)
**************************************************PPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGG********************************************NHINPLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFGSSSSSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWNVECQNQMEQIGLADPSLYWNSTSSVGAWHD************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSNCEKMVVISSTTNEWPQNHQIDEKNLMASTGRVMDKAGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANNSIDGSNPSAAANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFGSSSSSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWNVECQNQMEQIGLADPSLYWNSTSSVGAWHDPSNIGSSVTSLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q9FZA4	311	Dof zinc finger protein D	yes	no	0.745	0.864	0.424	1e-39
O24463	328	Dof zinc finger protein P	N/A	no	0.196	0.216	0.732	8e-29
Q9LSL6	316	Dof zinc finger protein D	no	no	0.213	0.243	0.675	5e-28
Q84TE9	257	Dof zinc finger protein D	no	no	0.296	0.416	0.504	1e-27
O80928	330	Dof zinc finger protein D	no	no	0.207	0.227	0.657	3e-27
Q9LZ56	399	Dof zinc finger protein D	no	no	0.152	0.137	0.872	6e-27
Q8L9V6	331	Dof zinc finger protein D	no	no	0.155	0.169	0.839	8e-27
Q9ZV33	340	Dof zinc finger protein D	no	no	0.249	0.264	0.54	2e-26
O82155	194	Dof zinc finger protein D	no	no	0.401	0.747	0.436	4e-26
Q9M2U1	323	Dof zinc finger protein D	no	no	0.157	0.176	0.824	9e-26

>sp|Q9FZA4|DOF14_ARATH Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/325 (42%), Positives = 173/325 (53%), Gaps = 56/325 (17%)

Query: 53  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRP- 111
           LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGG  RKNKRVKRP 
Sbjct: 27  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVKRPS 86

Query: 112 ASANNSIDGSNPSAAANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSR 171
            +   +    + + +++PNNPH   QI   S+ NH +PLF+GLS + S  N       SR
Sbjct: 87  TATTTTASTVSTTNSSSPNNPH---QISHFSSMNH-HPLFYGLSDHMSSCNNNLPMIPSR 142

Query: 172 VVSSLDTISGYDLQPQ--------LNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQE 223
              S  T S   L+ +        L+ALGLG    +   +T  G             I  
Sbjct: 143 FSDSSKTCSSSGLESEFLSSGFSSLSALGLGLPHQMSHDHTINGSF-----------INN 191

Query: 224 VVTSSNSLLSSYPTFGSSSSSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFE 283
             T+   LLS    FGSS SS   +S L    H+P    G +   +         LAS +
Sbjct: 192 STTNKPFLLSG--LFGSSMSS---SSTLLQHPHKPMNNGGDMLGQSHL-----QTLASLQ 241

Query: 284 DLQMTANNNNNNGEAARTGMMKEVKAEEGQ-RRMDWNVECQNQMEQIGLADPSLY---WN 339
           DL +  NN             +++K +EG+  ++  N+     M      DPS Y   WN
Sbjct: 242 DLHVGGNN-------------EDMKYKEGKLDQISGNIN--GFMSSSSSLDPSNYNNMWN 286

Query: 340 STSSV-GAWHDPS--NIGSSVTSLI 361
           + S V GAW DP+  N+GSS+TSLI
Sbjct: 287 NASVVNGAWLDPTNNNVGSSLTSLI 311

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 60/71 (84%)

Query: 40  AGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVG 99
           +G+  P+ Q    LKCPRCDS+NTKFCYYNNYS+SQPR+FCKAC+RYWT GGTLRNVP+G
Sbjct: 47  SGERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIG 106

Query: 100 GGCRKNKRVKR 110
           GGCRKNK   R
Sbjct: 107 GGCRKNKHASR 117

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1

 Score =  125 bits (314), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 65/80 (81%), Gaps = 3/80 (3%)

Query: 42  QEPPQQ---QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 98
           ++PP     Q Q  LKCPRC+S NTKFCYYNNYSLSQPRHFCK+C+RYWTRGG LRNVP+
Sbjct: 27  KKPPSSSVAQDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPI 86

Query: 99  GGGCRKNKRVKRPASANNSI 118
           GGGCRK K+  +P S+ N++
Sbjct: 87  GGGCRKTKKSIKPNSSMNTL 106

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 82/125 (65%), Gaps = 18/125 (14%)

Query: 50  QPP---LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNK 106
           QPP   L+CPRCDS+NTKFCYYNNYSL+QPR+FCK+C+RYWT+GGTLRN+PVGGGCRKNK
Sbjct: 49  QPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNK 108

Query: 107 RVKRPASANNSIDGSNPSAAANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPFS 166
           R    +SA  S+  + P  A++     S    +  S + HI            D++L F+
Sbjct: 109 RST--SSAARSLR-TTPEPASHDGKVFSAAGFNGYSNNEHI------------DLSLAFA 153

Query: 167 TFNSR 171
             N +
Sbjct: 154 LLNKQ 158

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 63/76 (82%), Gaps = 1/76 (1%)

Query: 34  GRVMDKAGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL 93
           G ++D+A ++      +  LKCPRC+S+NTKFCY+NNYSL+QPRHFCK C+RYWTRGG L
Sbjct: 71  GSMVDRA-RQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAL 129

Query: 94  RNVPVGGGCRKNKRVK 109
           RNVPVGGGCR+N+R K
Sbjct: 130 RNVPVGGGCRRNRRTK 145

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ56|DOF51_ARATH Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1

 Score =  121 bits (304), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 54/55 (98%)

Query: 53  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKR 107
           LKCPRCDS+NTKFCY+NNYSL+QPRHFCKAC+RYWTRGG LR+VPVGGGCR+NKR
Sbjct: 95  LKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKR 149

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2

 Score =  121 bits (303), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 53/56 (94%)

Query: 52  PLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKR 107
           PLKCPRCDSSNTKFCYYNNY+L+QPRHFCK C+RYWT+GG LRNVPVGGGCR+N +
Sbjct: 76  PLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNK 131

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV33|DOF22_ARATH Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 10/100 (10%)

Query: 15  TNEWPQNHQIDEKNLMASTGRVMDKA---GQEPPQ----QQQQPP---LKCPRCDSSNTK 64
           ++ +PQN   +  ++  +    +D +   GQ   +    +  QPP   LKCPRCDS+NTK
Sbjct: 46  SHHFPQNPNPNHHHVETAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTK 105

Query: 65  FCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRK 104
           FCY+NNY+L+QPRHFCKAC+RYWTRGG LRNVPVGGGCR+
Sbjct: 106 FCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRR 145

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O82155|DOF17_ARATH Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 88/165 (53%), Gaps = 20/165 (12%)

Query: 36  VMDKAGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRN 95
           +M  A Q  P+  +Q  LKCPRCDS NTKFCYYNNY+LSQPRHFCK C+RYWT+GG LRN
Sbjct: 16  MMTTAKQNQPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRN 75

Query: 96  VPVGGGCRKNKRVKRPASANNSIDGSNPSAAANPNNPHSQRQIDISSTSNHINPLFFGLS 155
           +PVGGG RK          +N   GS+PS+    N   +++     S S        G  
Sbjct: 76  IPVGGGTRK----------SNKRSGSSPSSNLK-NQTVAEKPDHHGSGSEEKEERVSGQE 124

Query: 156 TNPSDM--NLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSG 198
            NP+ M   LP    N    SSL       L   +   GL + SG
Sbjct: 125 MNPTRMLYGLPVGDPNGASFSSL-------LASNMQMGGLVYESG 162

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  118 bits (295), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 53/57 (92%)

Query: 53  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 109
           L CPRCDS+NTKFCY+NNYSL+QPRHFCK C+RYWTRGG+LRNVPVGGG R+NKR K
Sbjct: 76  LNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNKRSK 132

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
255536771	357	zinc finger protein, putative [Ricinus c	0.936	0.946	0.642	1e-111
256261639	341	putative DOF zinc finger protein [Jatrop	0.861	0.912	0.621	1e-109
297740408	372	unnamed protein product [Vitis vinifera]	0.839	0.814	0.628	1e-107
359483824	309	PREDICTED: dof zinc finger protein DOF1.	0.842	0.983	0.652	1e-105
224125528	322	f-box family protein [Populus trichocarp	0.847	0.950	0.611	8e-97
356555344	353	PREDICTED: dof zinc finger protein DOF1.	0.919	0.940	0.502	1e-74
356546638	342	PREDICTED: dof zinc finger protein DOF1.	0.869	0.918	0.493	5e-67
356546223	318	PREDICTED: dof zinc finger protein DOF1.	0.806	0.915	0.475	7e-57
356521388	315	PREDICTED: dof zinc finger protein DOF1.	0.778	0.892	0.468	1e-56
37051129	396	DNA binding with one finger 4 protein [P	0.831	0.757	0.455	3e-54

>gi|255536771|ref|XP_002509452.1| zinc finger protein, putative [Ricinus communis] gi|223549351|gb|EEF50839.1| zinc finger protein, putative [Ricinus communis]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/380 (64%), Positives = 288/380 (75%), Gaps = 42/380 (11%)

Query: 1   MLSNCEKMVVISSTTNEWPQNHQIDEKNLM-ASTGRVMDKAGQEPPQQQQQP----PLKC 55
           ML NCEKMVVIS TTNEWPQN QIDEK+LM +ST ++M+K GQ+P Q QQQ      LKC
Sbjct: 1   MLGNCEKMVVISPTTNEWPQN-QIDEKSLMVSSTSKLMEKRGQDPSQPQQQQQPQQALKC 59

Query: 56  PRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASAN 115
           PRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRP+S+ 
Sbjct: 60  PRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPSSSG 119

Query: 116 NSIDGS-NPSAAANPNNPHS-QRQID-ISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRV 172
              +G+ N  ++ NPNNP S Q  ID I+STSNHIN LF+GL TNPS+MNLPF  FNSRV
Sbjct: 120 G--EGTINQVSSVNPNNPSSHQTPIDHITSTSNHINHLFYGLPTNPSEMNLPFGRFNSRV 177

Query: 173 VSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLL 232
            S++DT  GYDL PQLNAL LGFSSG++      G+    NGFNP K IQ+ VTS+ SLL
Sbjct: 178 SSNMDT--GYDLPPQLNALALGFSSGIL------GNNEANNGFNPTKHIQDSVTST-SLL 228

Query: 233 SSY------PTFGSSSSSPTIASLLASSLHQP-KFMNGVVKSSTEAPNHFNNNLASFEDL 285
           ++Y       +  ++++SP+IA+LLASSLHQ  KF    VK S  APNHF  NL  FEDL
Sbjct: 229 TNYSSIFGCSSSSTATTSPSIATLLASSLHQQNKF---SVKDSNRAPNHF-QNLTPFEDL 284

Query: 286 QMTANNNNNNGEAARTGM-MKEVKAEEGQRRMDWNVECQNQMEQIGL--ADPSLYWN-ST 341
           QM+ N       +  +G+ MKEVK E+GQ R+ WN+ CQNQ+EQ+G   ++PSLYWN +T
Sbjct: 285 QMSCN-------STESGIAMKEVKTEQGQSRLHWNMPCQNQIEQMGFSSSEPSLYWNPNT 337

Query: 342 SSVGAWHDPSNIGSSVTSLI 361
           SSVG WHDP+NIGSSVTSLI
Sbjct: 338 SSVGTWHDPANIGSSVTSLI 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256261639|gb|ACU65940.1| putative DOF zinc finger protein [Jatropha curcas]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/365 (62%), Positives = 261/365 (71%), Gaps = 54/365 (14%)

Query: 26  EKNLMASTGRVMDKAGQE-----------------PPQQQQQPPLKCPRCDSSNTKFCYY 68
            K+LM ST ++M+K GQE                    Q  Q  LKCPRCDSSNTKFCYY
Sbjct: 2   RKSLMPSTSKLMEKRGQELSQPQQLHHQQQQQQQQQQHQPPQQALKCPRCDSSNTKFCYY 61

Query: 69  NNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANNSIDGSNPSA--A 126
           NNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASA   ++G+  SA  A
Sbjct: 62  NNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASA---VEGATTSASSA 118

Query: 127 ANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPF-STFNSRVVSSLDTISGYDLQ 185
           ANPNN  SQ  IDISSTSNH NPLF+GL+ NPS++NL F  TFNSRV S++D +SGYDLQ
Sbjct: 119 ANPNNHPSQTPIDISSTSNHSNPLFYGLTANPSEVNLSFPGTFNSRVSSNMDIVSGYDLQ 178

Query: 186 PQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYP-TFGSSSS- 243
           PQLNAL LGFS+                GFNP+KQIQ+VVTSS SLLS+Y   FGSS+S 
Sbjct: 179 PQLNALALGFSTN-------------NGGFNPSKQIQDVVTSSTSLLSNYSNLFGSSNSL 225

Query: 244 ----SPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAA 299
               SPT+A+LLASSLHQ KF    +K +  A NH+  +L SF+DLQM+ NNN + G A 
Sbjct: 226 TATASPTMATLLASSLHQQKF---SIKDARAALNHY-QSLTSFQDLQMSGNNNESAGIAT 281

Query: 300 RTGMMKEVKAEEGQRRMDWNVECQNQMEQIGL--ADPSLYWN-STSSVGAWHDPSNIGSS 356
                KEVK E+   R+DWN+ CQNQ++QIG   +DPSLYWN STSSVGAWHDP NIGSS
Sbjct: 282 -----KEVKIEQDHSRLDWNMPCQNQIDQIGFSSSDPSLYWNTSTSSVGAWHDPGNIGSS 336

Query: 357 VTSLI 361
           VTSLI
Sbjct: 337 VTSLI 341

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740408|emb|CBI30590.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/366 (62%), Positives = 263/366 (71%), Gaps = 63/366 (17%)

Query: 1   MLSNCEKMVVISSTTNEWPQNHQIDEKNLMASTGRVMDKAGQEPPQQQQQPPLKCPRCDS 60
           ML NCEKMVVISSTTN+WP+N QID+K LMASTGRVM+K GQE      Q  LKCPRCDS
Sbjct: 65  MLGNCEKMVVISSTTNDWPEN-QIDDKGLMASTGRVMEKPGQE------QQALKCPRCDS 117

Query: 61  SNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANNSIDG 120
           SNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPAS   S+D 
Sbjct: 118 SNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPAS---SVDA 174

Query: 121 --SNPSAAANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRVVSSLDT 178
             S P+AA NP  P    QID+S++SNH+ PLF+GL +NPS++NLPF  FNSR  S+ DT
Sbjct: 175 PSSAPTAALNPPPPS---QIDLSASSNHVTPLFYGLPSNPSELNLPFPRFNSR-ASNEDT 230

Query: 179 ISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTF 238
           +SGYDLQPQL ALGLGFSSG+I ++T   D  YRNGFNP KQIQ++VTSS SLLS+Y  F
Sbjct: 231 VSGYDLQPQLGALGLGFSSGIIANDTRTDD--YRNGFNPAKQIQDLVTSS-SLLSNYSIF 287

Query: 239 G--SSSSSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNG 296
           G  SS+++PT+ASL+ SSL Q KFMNG +K S  A NHF                     
Sbjct: 288 GSSSSTTTPTMASLINSSLQQQKFMNGDLKESRGA-NHF--------------------- 325

Query: 297 EAARTGMMKEVKAEEGQRRMDWN-VECQNQMEQIGLADPSLYWNSTSSVGAWHDPSNIGS 355
                             +  WN V CQNQ+EQIG +DPSLYWN T S+GAW D  N+GS
Sbjct: 326 ------------------QPLWNSVPCQNQIEQIGSSDPSLYWNLT-SLGAWSDLPNMGS 366

Query: 356 SVTSLI 361
           SVTSLI
Sbjct: 367 SVTSLI 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483824|ref|XP_003633022.1| PREDICTED: dof zinc finger protein DOF1.4-like [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/337 (65%), Positives = 256/337 (75%), Gaps = 33/337 (9%)

Query: 30  MASTGRVMDKAGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTR 89
           MASTGRVM+K GQE      Q  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTR
Sbjct: 1   MASTGRVMEKPGQE------QQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTR 54

Query: 90  GGTLRNVPVGGGCRKNKRVKRPASANNSIDG--SNPSAAANPNNPHSQRQIDISSTSNHI 147
           GGTLRNVPVGGGCRKNKRVKRPAS   S+D   S P+AA NP  P    QID+S++SNH+
Sbjct: 55  GGTLRNVPVGGGCRKNKRVKRPAS---SVDAPSSAPTAALNPPPPS---QIDLSASSNHV 108

Query: 148 NPLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVG 207
            PLF+GL +NPS++NLPF  FNSR  S+ DT+SGYDLQPQL ALGLGFSSG+I ++T   
Sbjct: 109 TPLFYGLPSNPSELNLPFPRFNSR-ASNEDTVSGYDLQPQLGALGLGFSSGIIANDTRTD 167

Query: 208 DCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFG--SSSSSPTIASLLASSLHQPKFMNGVV 265
           D  YRNGFNP KQIQ++VTSS SLLS+Y  FG  SS+++PT+ASL+ SSL Q KFMNG +
Sbjct: 168 D--YRNGFNPAKQIQDLVTSS-SLLSNYSIFGSSSSTTTPTMASLINSSLQQQKFMNGDL 224

Query: 266 KSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWN-VECQN 324
           K S  A NHF   L  +EDLQ++ N          +  MKEVK+E G   ++WN V CQN
Sbjct: 225 KESRGA-NHF-QPLVPYEDLQISGNT---------SMAMKEVKSEHGHNTLEWNSVPCQN 273

Query: 325 QMEQIGLADPSLYWNSTSSVGAWHDPSNIGSSVTSLI 361
           Q+EQIG +DPSLYWN T S+GAW D  N+GSSVTSLI
Sbjct: 274 QIEQIGSSDPSLYWNLT-SLGAWSDLPNMGSSVTSLI 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125528|ref|XP_002329827.1| f-box family protein [Populus trichocarpa] gi|222870889|gb|EEF08020.1| f-box family protein [Populus trichocarpa]

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 209/342 (61%), Positives = 247/342 (72%), Gaps = 36/342 (10%)

Query: 30  MASTGRVMDKAGQE-----PPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACK 84
           MAST ++M++  QE       QQQ Q  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACK
Sbjct: 1   MASTSKLMERPSQEVLSQPQQQQQLQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACK 60

Query: 85  RYWTRGGTLRNVPVGGGCRKNKRVKRPASANNSIDGSNPSAAANPNNPHSQRQID-ISST 143
           RYWTRGGTLRNVPVGGGCRKNKRVKRPASA      S  SA  NP  P     ID ISST
Sbjct: 61  RYWTRGGTLRNVPVGGGCRKNKRVKRPASAAEGASNSVSSANPNPQTP-----IDHISST 115

Query: 144 SNHINPLFFGLS-TNPSDMNLPF-STFNSRVVSSLDTISGY-DLQPQLNALGLGFSSGLI 200
           SNHINPLF+GLS +NPS+MNLPF   FN R+ S+   +SGY DLQPQLNAL LGFSSG++
Sbjct: 116 SNHINPLFYGLSGSNPSEMNLPFPGRFNPRMDSA---VSGYHDLQPQLNALALGFSSGIM 172

Query: 201 MSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFG-----SSSSSPTIASLLASSL 255
            +N         NGFNP KQIQ+VVTS++ L S    FG     ++++SPTIASLLASS 
Sbjct: 173 TTND-------ANGFNPTKQIQDVVTSNSLLSSYSNLFGSSTTSTNTTSPTIASLLASSF 225

Query: 256 HQPKFMNGVVKSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRR 315
           +Q KF N  +K ST APN+F +    F++LQM  N+ +  G       MK VK E  Q R
Sbjct: 226 NQQKFTNSGIKESTRAPNYFQSLTVPFKELQMNGNSESGIG-------MKGVKTEHNQNR 278

Query: 316 MDWNVECQNQMEQIGLADPSLYWNSTSSVGAWHDPSNIGSSV 357
           +DWNV CQNQ+EQ+GL+DPS+YWN+ +SVG+WHDP+N+GSSV
Sbjct: 279 LDWNVPCQNQIEQVGLSDPSMYWNTNTSVGSWHDPANMGSSV 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555344|ref|XP_003545993.1| PREDICTED: dof zinc finger protein DOF1.4-like [Glycine max]

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 192/382 (50%), Positives = 252/382 (65%), Gaps = 50/382 (13%)

Query: 1   MLSNCEKMVVISSTTNEWPQNHQIDEKNLMASTG------RVMDKAGQEPPQQQQQPP-- 52
           M +NCEKMV I  TTN+W Q    D K LM S G      +VM+K GQ    QQQQ P  
Sbjct: 1   MSANCEKMVAIPPTTNQWLQVD--DHKVLMGSNGGSSNNNKVMEKPGQNQLVQQQQHPET 58

Query: 53  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPA 112
           LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCR+NKRVKRP 
Sbjct: 59  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRVKRPI 118

Query: 113 SA--NNSIDGSNPSAAANPNNPHS---QRQIDISSTSNHINPLFFGLSTNPSDMNLP-FS 166
           ++  + +ID ++ S+ ++     +   Q QID +STSNHINPLF+GL ++ SD+NLP FS
Sbjct: 119 TSPCSAAIDTASNSSNSSSAPTAAASLQPQIDTASTSNHINPLFYGLPSSSSDVNLPLFS 178

Query: 167 TFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVT 226
            F SR+ S     SG+DLQ   NALGLGFSSG ++SN    +  YR+GF           
Sbjct: 179 RFGSRISS-----SGFDLQLN-NALGLGFSSG-VLSNEASDNNGYRSGF----------- 220

Query: 227 SSNSLLSSYPTFGSSSSSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLA--SFED 284
            SN++L S  T  ++++    + LL     Q KF++G +K+  ++ N F + L+  S E 
Sbjct: 221 GSNNMLLSSYTSTTTTTPAMSSLLL-----QQKFISGGLKNDADSSNTFQHGLSLTSLEQ 275

Query: 285 LQMTANNNNNNGEAARTGMMKEVKAEEGQ--RRMDWNVEC-QNQMEQIGLADPSLYW-NS 340
           LQ+ +++++  G  A    +K+VK E GQ   R++WN    Q+Q++ +GL DP LYW NS
Sbjct: 276 LQIASDHSSEAGMVA----LKDVKVELGQNNNRLEWNGGAFQSQIQHVGLYDPLLYWNNS 331

Query: 341 TSSVGAWHD-PSNIGSSVTSLI 361
            +++G W+D  +NIGSSVTSLI
Sbjct: 332 ATALGVWNDQAANIGSSVTSLI 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546638|ref|XP_003541731.1| PREDICTED: dof zinc finger protein DOF1.4, partial [Glycine max]

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 181/367 (49%), Positives = 239/367 (65%), Gaps = 53/367 (14%)

Query: 21  NHQIDEKNLM---------ASTGRVMDKAGQEPPQQQQ----QPPLKCPRCDSSNTKFCY 67
           +HQ+D+  ++          +  +V++K GQ+   QQQ    + P KCPRCDSSNTKFCY
Sbjct: 3   HHQVDDHKVLMGSNGGSSNNNNNKVLEKPGQDQLVQQQQQQQEAP-KCPRCDSSNTKFCY 61

Query: 68  YNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANN----SIDGSNP 123
           YNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCR+NKRVKRP    N    +ID +  
Sbjct: 62  YNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRVKRPLITTNPSSAAIDTAAS 121

Query: 124 SAAANPNNPHSQRQIDISSTSNHINPLFFGLSTNPSDMNLP-FSTFNSRVVSSLDTISGY 182
           + ++N ++   Q  ID +STSNHINPLF+GL ++ SD+NLP FS F SR+ S     SG+
Sbjct: 122 NNSSNSSSAPLQPPIDTASTSNHINPLFYGLPSSSSDVNLPLFSRFGSRISS-----SGF 176

Query: 183 DLQPQLNALGLGFSSGLIMSNTDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFGSSS 242
           DLQ   NALGLGFSSG ++SN    +  YRN F            SN+ L S  T  +S+
Sbjct: 177 DLQLN-NALGLGFSSG-VLSNEASDNNGYRNWF-----------GSNNTLLSSYTSTTST 223

Query: 243 SSPTIASLLASSLHQPKFMNGVVKSSTEAPNHFNNNLA--SFEDLQMTANNNNNNGEAAR 300
           ++P ++SLL+SSL Q KFM   V S+    N F + L     E LQM +++++  G  A 
Sbjct: 224 TTPAMSSLLSSSLLQQKFMTDGVDST----NTFQHGLGLTPLEQLQMASDHSSEAGMVA- 278

Query: 301 TGMMKEVKAEEGQ-RRMDWN--VECQNQMEQIGLADPSLYWN--STSSVGAWHD-PSNIG 354
              +K+VK E GQ  R++WN    CQ+Q++ +GL DPSLYWN  + +++G W+D  +NIG
Sbjct: 279 ---LKDVKVELGQNNRLEWNNGAACQSQIQHVGLYDPSLYWNNSAATALGVWNDQAANIG 335

Query: 355 SSVTSLI 361
           SSVTSLI
Sbjct: 336 SSVTSLI 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546223|ref|XP_003541529.1| PREDICTED: dof zinc finger protein DOF1.4 [Glycine max]

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 168/353 (47%), Positives = 208/353 (58%), Gaps = 62/353 (17%)

Query: 34  GRVMDKAGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL 93
           GRVM+K  Q+  QQQQQ  LKCPRC+SSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL
Sbjct: 3   GRVMEKPSQDLLQQQQQA-LKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL 61

Query: 94  RNVPVGGGCRKNKRVKRPASANN----SIDGSNPSAAANPNNPHSQRQIDISSTSNHIN- 148
           RNVPVGGGCRKNKRVKRP +  +    + +  + S +  P+ PH    I  SST+NHIN 
Sbjct: 62  RNVPVGGGCRKNKRVKRPTNHGDSSSSAANSPSSSNSNPPSQPHIDNIIASSSTTNHINN 121

Query: 149 --PLFFGLSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDV 206
             P F+G     S   +PF  FN              L  QLNALGLGFS+G+       
Sbjct: 122 ISPFFYGGDVMSS---VPFPRFN--------------LHSQLNALGLGFSTGV------- 157

Query: 207 GDCNYRNGFNPNKQIQEVVTSSNSLLSSYPTFGSSSSSPTIASLLASSLHQPKFMNGVVK 266
                 NGF+ +       ++ NS+  S  +   + S+P +ASLL+S+L Q K M+G   
Sbjct: 158 ----SENGFSTSNN-NSFFSAYNSMFGSSSSSTCAPSTPVMASLLSSTLLQQKLMSGGGG 212

Query: 267 SST-------EAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEGQRRMDWN 319
                     +  N F + LA  + LQ+  NNNN+N         KEV+  EGQ R DW+
Sbjct: 213 GGVKGSSDHDQGGNTF-HGLAPLQGLQVEGNNNNSNNIGT-----KEVRG-EGQNRFDWS 265

Query: 320 ---------VECQNQMEQIGLADP-SLYWNSTSSVGAWHD-PSNIGSSVTSLI 361
                      CQNQME +GL+DP SLYWN+ + +GAW D P+NIG SVTSLI
Sbjct: 266 NNNNNNNGGGGCQNQMEHVGLSDPNSLYWNTATGLGAWSDQPNNIGPSVTSLI 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521388|ref|XP_003529338.1| PREDICTED: dof zinc finger protein DOF1.4 [Glycine max]

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 210/361 (58%), Gaps = 80/361 (22%)

Query: 34  GRVMDKAGQEPPQQQQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL 93
           GR+M+K  Q+  QQQQQ  LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL
Sbjct: 2   GRIMEKPSQDLLQQQQQA-LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL 60

Query: 94  RNVPVGGGCRKNKRVKRPASAN-----NSIDGSNPSAAANPNNPHSQRQIDISSTSNH-- 146
           RNVPVGGGCRKNKR+KRP + +     +    +  +++  P+ PH    I   S +NH  
Sbjct: 61  RNVPVGGGCRKNKRMKRPTNGDSSSANSPSSSTPSASSNPPSQPHIDNIIVSGSATNHIN 120

Query: 147 -INPLFFGLSTNPSDM--NLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSN 203
            INPLF+G      D+  N+PF  FN              LQ QLNALGLGFSSG+    
Sbjct: 121 NINPLFYG-----GDVMNNVPFPKFNL-------------LQSQLNALGLGFSSGV---- 158

Query: 204 TDVGDCNYRNGFNPNKQIQEVVTSSNSLLSSY-PTFGS------SSSSPTIASLLASSLH 256
                    NGF+         TS+N+  S+Y   FGS      + S+P +ASLL+S+L 
Sbjct: 159 -------RENGFS--------TTSNNNFFSAYNSIFGSSSSSTCAPSTPVMASLLSSTLL 203

Query: 257 QPKFMNGVV-----KSSTEAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEE 311
           Q  FM G       +   +  N F + LA  + L++  ++NNN G        KEVK  E
Sbjct: 204 QQNFMGGGGGGVKGRDHDQGDNTF-HGLAPLQGLRVEGDSNNNIGS-------KEVKG-E 254

Query: 312 GQRRMDWN----------VECQNQMEQIGLADP-SLYWNSTSSVGAWHDPSNIGSSVTSL 360
           GQ R +W+             QNQME +GL+DP SLYWN+ + +GAW D  NIG SVTSL
Sbjct: 255 GQNRFEWSNNNNNNNNNGGGGQNQMEHVGLSDPNSLYWNTATGLGAWSDQPNIGPSVTSL 314

Query: 361 I 361
           I
Sbjct: 315 I 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37051129|dbj|BAC81661.1| DNA binding with one finger 4 protein [Pisum sativum]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 174/382 (45%), Positives = 208/382 (54%), Gaps = 82/382 (21%)

Query: 6   EKMVVISSTTNEWPQNHQIDEKNLMAS-TG-RVMDKAGQEPPQQQQQPPLKCPRCDSSNT 63
           EK ++ SS   +W Q+   D K  MAS TG RVM+K GQE  QQQQQ  L+CPRCDSSNT
Sbjct: 12  EKTIITSS---KWTQSEIDDHKVSMASSTGNRVMEKPGQELLQQQQQA-LRCPRCDSSNT 67

Query: 64  KFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPA---SANNSID- 119
           KFCYYNNYSL+QPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKR+KRP    S NN+ID 
Sbjct: 68  KFCYYNNYSLTQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPTYPCSNNNNIDF 127

Query: 120 ------GSNPSAAANPNNP---------HSQRQIDISSTSNHINPLFFGLSTNPSDMNLP 164
                  +  S  ANPN P               DI++TSNHIN + +G ++    MN P
Sbjct: 128 SASPSSSTPSSVVANPNPPSQSQQQQQQQQHHSFDIAATSNHINTMLYGGNSCHDVMNFP 187

Query: 165 FST-FNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTDVGDCN------------- 210
           FST FNS    S +  SGYD  PQ N LGLGFSSG++MS    G+ N             
Sbjct: 188 FSTRFNSTTRVS-NPASGYDNLPQ-NGLGLGFSSGILMSAAG-GEVNLNHHHHHHHDEGS 244

Query: 211 YRNGFNPNKQIQEVVTSSNSLLSSYPTFGSSS-SSPTIASLLASSLHQPKFMNGVVKSST 269
           YRNGF+ +                   FGSSS ++P +ASLL+S+L Q KFM        
Sbjct: 245 YRNGFSTSNNNNYSS-----------IFGSSSTTTPVMASLLSSTLLQQKFMGTGGGIKG 293

Query: 270 EAPNHFNNNLASFEDLQMTANNNNNNGEAARTGMMKEVKAEEG-QRRMD-W--------- 318
                  ++       +M +               KEVK  EG Q R+D W         
Sbjct: 294 GGGGGGGDDDPFHHHQEMDS---------------KEVKLGEGLQNRLDQWNMNNLNGNG 338

Query: 319 NVECQNQMEQIGLAD--PSLYW 338
               QNQME +GL+D   SLYW
Sbjct: 339 GAVFQNQMENMGLSDNNASLYW 360

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2032153	325	AT1G28310 [Arabidopsis thalian	0.387	0.430	0.565	2.3e-44
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.470	0.515	0.404	1e-32
TAIR|locus:2181773	399	AT5G02460 [Arabidopsis thalian	0.368	0.333	0.437	4.8e-31
TAIR|locus:2053175	340	AT2G28810 [Arabidopsis thalian	0.465	0.494	0.394	2.6e-30
TAIR|locus:2026595	339	OBP2 [Arabidopsis thaliana (ta	0.282	0.300	0.514	8.6e-30
TAIR|locus:2170753	372	HCA2 "HIGH CAMBIAL ACTIVITY2"	0.168	0.163	0.765	1.8e-29
TAIR|locus:2056588	288	AT2G28510 [Arabidopsis thalian	0.351	0.440	0.456	5.9e-29
TAIR|locus:2155755	316	AT5G65590 [Arabidopsis thalian	0.182	0.208	0.757	1.7e-27
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.177	0.181	0.703	3.6e-27
TAIR|locus:2159275	307	OBP4 "OBF binding protein 4" [	0.401	0.472	0.443	9.4e-27

TAIR|locus:2032153 AT1G28310 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 82/145 (56%), Positives = 91/145 (62%)

Query:    53 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPA 112
             LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGG  RKNKRVKRP+
Sbjct:    41 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVKRPS 100

Query:   113 SANNSIDGXXXXXXXXXXXXXXQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRV 172
             +A  +                   QI   S+ NH +PLF+GLS + S  N       SR 
Sbjct:   101 TATTTT--ASTVSTTNSSSPNNPHQISHFSSMNH-HPLFYGLSDHMSSCNNNLPMIPSRF 157

Query:   173 VSSLDTISGYDLQPQLNALGLGFSS 197
               S  T S   L+ +   L  GFSS
Sbjct:   158 SDSSKTCSSSGLESEF--LSSGFSS 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 72/178 (40%), Positives = 100/178 (56%)

Query:    34 GRVMDKAGXXXXXXXXXXXLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL 93
             G ++D+A            LKCPRC+S+NTKFCY+NNYSL+QPRHFCK C+RYWTRGG L
Sbjct:    71 GSMVDRA-RQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAL 129

Query:    94 RNVPVGGGCRKNKRVKRPASANNSIDGXXXXXXXXXXXXXXQRQIDISST--SNHINPLF 151
             RNVPVGGGCR+N+R K  ++ NN+                    I +SS    N  + L 
Sbjct:   130 RNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNASTISTI-LSSHYGGNQESILS 188

Query:   152 FGLST----NPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGLGFSSGLIMSNTD 205
               LS     NP+  +L   T N++  +++  ++   L   L ++ +G S G +MS  D
Sbjct:   189 QILSPARLMNPTYNHLGDLTSNTKTDNNMSLLNYGGLSQDLRSIHMGASGGSLMSCVD 246

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2181773 AT5G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 63/144 (43%), Positives = 83/144 (57%)

Query:    53 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPA 112
             LKCPRCDS+NTKFCY+NNYSL+QPRHFCKAC+RYWTRGG LR+VPVGGGCR+NKR K  +
Sbjct:    95 LKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTKNSS 154

Query:   113 SANNSIDGXXXXXXXXXXXXXXQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRV 172
                                   Q     +  +N + P      ++ S ++   S++N+ +
Sbjct:   155 GGGGGSTSSGNSKSQDSATSNDQYH-HRAMANNQMGP-----PSSSSSLSSLLSSYNAGL 208

Query:   173 VSSLDTISGYDLQPQLNALGLGFS 196
             +   D  S  +     N LGLG S
Sbjct:   209 IPGHDHNSNNN-----NILGLGSS 227

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2053175 AT2G28810 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 69/175 (39%), Positives = 90/175 (51%)

Query:    34 GRVMDKAGXXXXXXXXXXXLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTL 93
             G+  ++A            LKCPRCDS+NTKFCY+NNY+L+QPRHFCKAC+RYWTRGG L
Sbjct:    75 GQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGAL 134

Query:    94 RNVPVGGGCRKNKRVKRPASANNSIDGXXXXXXXXXXXXXXQRQIDISSTSNHINPLFFG 153
             RNVPVGGGCR+NK+ K    + NS                     + S+     N  F  
Sbjct:   135 RNVPVGGGCRRNKKGK----SGNSKSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPF 190

Query:   154 LSTNPSDMNLPFSTFNSRVVSSLDTISGYDLQPQLNALGL---GFSSGLIMSNTD 205
             L T  +   L     N   ++  +  +G      LN LG    G +SG +M N +
Sbjct:   191 LPTLQNLTQLGGIGLNLAAINGNNGGNGNTSSSFLNDLGFFHGGNTSGPVMGNNN 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026595 OBP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 53/103 (51%), Positives = 66/103 (64%)

Query:    16 NEWPQNHQI-DEKNLMASTGRVMDKAGXXXXXXXXXXXLKCPRCDSSNTKFCYYNNYSLS 74
             N  P +H +     L +  G  M +             LKCPRCDSSNTKFCYYNNY+L+
Sbjct:    47 NPNPNHHHVATSAGLPSRMGGSMAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLT 106

Query:    75 QPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASANNS 117
             QPRHFCK C+RYWT+GG LRNVPVGGGCR+N +  +  +  +S
Sbjct:   107 QPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKSS 149

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2170753 HCA2 "HIGH CAMBIAL ACTIVITY2" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 49/64 (76%), Positives = 60/64 (93%)

Query:    54 KCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPAS 113
             KCPRC+S++TKFCYYNNYSLSQPR+FCK C+RYWT+GGTLRN+PVGGGCRKNK+   P+S
Sbjct:    74 KCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKK---PSS 130

Query:   114 ANNS 117
             +N+S
Sbjct:   131 SNSS 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010067 "procambium histogenesis" evidence=IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2056588 AT2G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 63/138 (45%), Positives = 81/138 (58%)

Query:    55 CPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASA 114
             CPRC+S NTKFCYYNNYSLSQPR+FCK+C+RYWT+GGTLRNVPVGGGCR+NKR    A +
Sbjct:    50 CPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSAFS 109

Query:   115 NNSIDGXXXXXXXXXXXXXXQRQIDISSTSNHINPLFFGLSTNPSDMNLPFSTFNSRVVS 174
              N+ +               Q  + I+     + P  FG   +  D+NL F+T     +S
Sbjct:   110 KNNNN-----KSINFHTDPLQNPL-ITG----MPPSSFGYD-HSIDLNLAFATLQKHHLS 158

Query:   175 SLDTISGYDLQPQLNALG 192
             S  T   +     L+  G
Sbjct:   159 SQATTPSFGFGGDLSIYG 176

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2155755 AT5G65590 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 50/66 (75%), Positives = 59/66 (89%)

Query:    53 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPA 112
             LKCPRC+S NTKFCYYNNYSLSQPRHFCK+C+RYWTRGG LRNVP+GGGCRK K+  +P 
Sbjct:    41 LKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKSIKPN 100

Query:   113 SANNSI 118
             S+ N++
Sbjct:   101 SSMNTL 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 45/64 (70%), Positives = 55/64 (85%)

Query:    53 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPA 112
             L CPRC+S NTKFCYYNNYSL+QPR+FCK C+RYWT GG+LRN+PVGGG RKNKR    +
Sbjct:    49 LNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNS 108

Query:   113 SANN 116
             S+++
Sbjct:   109 SSSS 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2159275 OBP4 "OBF binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 70/158 (44%), Positives = 90/158 (56%)

Query:    53 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK-RP 111
             LKCPRC+S NTKFCYYNNY+LSQPRHFCK C+RYWT+GG LRNVPVGGGCRK KR K + 
Sbjct:    51 LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQ 110

Query:   112 ASANNSIDGXXXXXXXXXXXXXXQRQIDISSTSNHINPLFFGLSTNPSDMNLPFS-TFNS 170
               +++S D                   + SST +H +     L+ + S      S T  +
Sbjct:   111 VPSSSSADKPTTTQDDHHVE-------EKSSTGSHSSSESSSLTASNSTTVAAVSVTAAA 163

Query:   171 RVVSSLDTISGYDLQPQLNALGLGFS-SGLIMSNTDVG 207
              V SS+  I G+D+ P +   G G   S L+   +  G
Sbjct:   164 EVASSV--IPGFDM-PNMKIYGNGIEWSTLLGQGSSAG 198

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	7e-39

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  132 bits (334), Expect = 7e-39
 Identities = 46/63 (73%), Positives = 51/63 (80%)

Query: 48  QQQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKR 107
           +    LKCPRCDS NTKFCYYNNY+L+QPR+FCK C+RYWT GG LRNVPVGGG RKNKR
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 108 VKR 110
              
Sbjct: 61  SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	93.29
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	92.74
COG3677	129	Transposase and inactivated derivatives [DNA repli	91.73
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.11
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	87.38
PF04216	290	FdhE: Protein involved in formate dehydrogenase fo	84.14
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	82.37
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	81.43

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=3.7e-37  Score=237.35  Aligned_cols=62  Identities=79%  Similarity=1.578  Sum_probs=59.1

Q ss_pred             CCCCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccccCCCcccCCCCCCC
Q 041099           49 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKR  110 (361)
Q Consensus        49 ~~~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNVPVGGG~RKnKr~~~  110 (361)
                      ++++++||||+|.+|||||||||++.||||||++|+||||+||+|||||||||+||+|++++
T Consensus         2 ~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    2 PEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            46789999999999999999999999999999999999999999999999999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=93.29  E-value=0.039  Score=48.51  Aligned_cols=34  Identities=29%  Similarity=0.762  Sum_probs=27.3

Q ss_pred             CCCCCCCCCCCceeeeeccc--CCCCCcchhhhhhhcc
Q 041099           52 PLKCPRCDSSNTKFCYYNNY--SLSQPRHFCKACKRYW   87 (361)
Q Consensus        52 ~l~CPRC~S~nTKFcYyNNy--~~~QPRhfCksCrRYW   87 (361)
                      ...||||.|.+|+-.  +.|  +.++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~~--s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTIT--SIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEee--cCCCChhhHHHhhhhhhCCcH
Confidence            489999999999964  555  4567789999998644

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=92.74  E-value=0.087  Score=37.70  Aligned_cols=29  Identities=34%  Similarity=0.785  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCCCceeeeecccCCCCCcchhhhhhh
Q 041099           51 PPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKR   85 (361)
Q Consensus        51 ~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrR   85 (361)
                      .+..||+|.+.  +...+.+    +.++.|++|++
T Consensus        17 ~g~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   17 DGFVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            45779999998  6655555    78999999986

It may be a zinc-binding beta ribbon domain that could bind DNA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=91.73  E-value=0.11  Score=44.87  Aligned_cols=37  Identities=32%  Similarity=0.630  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCceeeeecccCCCCCcchhhhhhhcccc
Q 041099           51 PPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTR   89 (361)
Q Consensus        51 ~~l~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~   89 (361)
                      ....||+|.+.+  +-=+.-+.....||.|++|++-|+.
T Consensus        29 ~~~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          29 TKVNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             ccCcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            347899999999  2225555566999999999999874

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.11  E-value=0.12  Score=36.42  Aligned_cols=31  Identities=35%  Similarity=0.718  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCCceeeeecccCC-CCCcchhhhhh
Q 041099           52 PLKCPRCDSSNTKFCYYNNYSL-SQPRHFCKACK   84 (361)
Q Consensus        52 ~l~CPRC~S~nTKFcYyNNy~~-~QPRhfCksCr   84 (361)
                      .+.||||.+.+.-  |=|-... -..||+|++|+
T Consensus         5 ~v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            3689999998721  2344443 35899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=87.38  E-value=0.52  Score=33.43  Aligned_cols=37  Identities=24%  Similarity=0.704  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCceeeeecccCCCCC---cchhhhhhhcccc
Q 041099           53 LKCPRCDSSNTKFCYYNNYSLSQP---RHFCKACKRYWTR   89 (361)
Q Consensus        53 l~CPRC~S~nTKFcYyNNy~~~QP---RhfCksCrRYWT~   89 (361)
                      .+||+|...+.-|-..+-.+...|   -|.|.+|...|..
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999977777655555555555   4999999999963

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []

Probab=84.14  E-value=0.46  Score=44.70  Aligned_cols=38  Identities=24%  Similarity=0.645  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCC-ceeeeeccc-CCCCCcchhhhhhhccc
Q 041099           51 PPLKCPRCDSSN-TKFCYYNNY-SLSQPRHFCKACKRYWT   88 (361)
Q Consensus        51 ~~l~CPRC~S~n-TKFcYyNNy-~~~QPRhfCksCrRYWT   88 (361)
                      ....||.|...+ .++-||..- ....--+.|+.|+.|+-
T Consensus       210 ~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK  249 (290)
T PF04216_consen  210 VRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLK  249 (290)
T ss_dssp             -TTS-TTT---SS-EEE--------SEEEEEETTTTEEEE
T ss_pred             cCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHH
Confidence            567899999988 667777433 33333499999999983

The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.37  E-value=0.9  Score=31.99  Aligned_cols=36  Identities=28%  Similarity=0.756  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCceeeeecccCCCCCc---chhhhhhhccc
Q 041099           53 LKCPRCDSSNTKFCYYNNYSLSQPR---HFCKACKRYWT   88 (361)
Q Consensus        53 l~CPRC~S~nTKFcYyNNy~~~QPR---hfCksCrRYWT   88 (361)
                      .+||+|...+.-|=-.+......|-   |.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3799999987665444555555443   89999999885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=81.43  E-value=1.8  Score=32.53  Aligned_cols=42  Identities=26%  Similarity=0.678  Sum_probs=29.0

Q ss_pred             CCCCCCCCCceeeeecccCCCCCcchhhhhhhccccCcccccccC
Q 041099           54 KCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV   98 (361)
Q Consensus        54 ~CPRC~S~nTKFcYyNNy~~~QPRhfCksCrRYWT~GGtLRNVPV   98 (361)
                      .|--|...+|..=.-   ....+..+|-+|.-||.+.|..|.+-.
T Consensus         1 ~C~~C~~~~Tp~WR~---g~~~~~~LCNaCgl~~~k~~~~rp~~~   42 (54)
T cd00202           1 ACSNCGTTTTPLWRR---GPSGGSTLCNACGLYWKKHGVMRPLSK   42 (54)
T ss_pred             CCCCCCCCCCccccc---CCCCcchHHHHHHHHHHhcCCCCCccc
Confidence            367787777643222   124678999999999999996655433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	89.08
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	86.22

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.08  E-value=0.24  Score=36.66  Aligned_cols=40  Identities=20%  Similarity=0.506  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCceeeeecccCCCCCc---chhhhhhhccccCcc
Q 041099           53 LKCPRCDSSNTKFCYYNNYSLSQPR---HFCKACKRYWTRGGT   92 (361)
Q Consensus        53 l~CPRC~S~nTKFcYyNNy~~~QPR---hfCksCrRYWT~GGt   92 (361)
                      ..||+|...+.-|=+.+-....-|-   |.|..|.-.|+.-++
T Consensus        24 ~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          24 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            6899999887776666555444443   899999999998543

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=0.2  Score=35.01  Aligned_cols=37  Identities=22%  Similarity=0.641  Sum_probs=30.2

Q ss_pred             CCCCCCCCCCCCceeeeecccCCCCCc---chhhhhhhcc
Q 041099           51 PPLKCPRCDSSNTKFCYYNNYSLSQPR---HFCKACKRYW   87 (361)
Q Consensus        51 ~~l~CPRC~S~nTKFcYyNNy~~~QPR---hfCksCrRYW   87 (361)
                      ...+||+|...+..|--.+..+...|-   +.|..|..-|
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            457999999988877666777766665   8999999888