Citrus Sinensis ID: 041109

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
MGGVRGSPVASSKKKSSTLQYLFDLDSRANSGSNHSSPNNNGLQSPYDSEKEEILSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAAAKKQNQFLQPQQYIRVPH
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHEccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
mggvrgspvasskkksstLQYLFDldsransgsnhsspnnnglqspydseKEEILSAISICNtiftftdpsespeqqdLKRFKLLQLLSItkspkkqlDDYILSHLISMISanlfrplpppistpitgdlpedeelfsspqplwphlQIVYDILLRLVLHvdpktlrdYIDHRFLTNLLSlfqsedlrerDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNfetekhcgIGELLEIWGSIingftvplkeEHKLFLIRVLIplhkskgmqAYHRQLAYCVSQFvqkepalgglvargilkywpvtncrkEVLLIGELEelvdsidpaqyRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMdpnlyskclEATEIRESAARQEEMKRKEKWRRIETLAAAKKQnqflqpqqyirvph
mggvrgspvasskkksstLQYLFDLDSRansgsnhsspnnnGLQSPYDSEKEEILSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLlslfqsedlrerdSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAAakkqnqflqpqqyirvph
MGGVRGSPVASSKKKSSTLQYLFDLDSRAnsgsnhsspnnngLQSPYDSEKEEILSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKevlligeleelvDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAAAKKQNQFLQPQQYIRVPH
*****************************************************ILSAISICNTIFTFT************RFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLP*********************QPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLE**********************************************
****************************************************EILSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPP*********PEDEELFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKC*********************WRRI***********************
*****************TLQYLFDLDSR*********************EKEEILSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRE*************WRRIETLAAAKKQNQFLQPQQYIRVPH
*************************************PNNNGLQSPYDSEKEEILSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPP*******DLPED**LFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAAAK****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGGVRGSPVASSKKKSSTLQYLFDLDSRANSGSNHSSPNNNGLQSPYDSEKEEILSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAAAKKQNQFLQPQQYIRVPH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query467 2.2.26 [Sep-21-2011]
O04375495 Serine/threonine protein yes no 0.931 0.878 0.426 1e-105
Q9LU89510 Serine/threonine protein no no 0.944 0.864 0.422 1e-105
Q9SV41497 Serine/threonine protein no no 0.832 0.782 0.453 1e-104
Q8LF36492 Serine/threonine protein no no 0.946 0.898 0.404 1e-103
O04376499 Serine/threonine protein no no 0.869 0.813 0.448 1e-103
Q93YV6500 Serine/threonine protein no no 0.841 0.786 0.437 1e-102
Q9LVE2546 Serine/threonine protein no no 0.862 0.738 0.435 1e-102
Q8RW96522 Serine/threonine protein no no 0.860 0.770 0.447 1e-101
Q9ZQY6477 Serine/threonine protein no no 0.854 0.836 0.442 1e-95
Q28653586 Serine/threonine-protein yes no 0.905 0.721 0.400 2e-89
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function desciption
 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/469 (42%), Positives = 294/469 (62%), Gaps = 34/469 (7%)

Query: 10  ASSKKKSSTLQYLFDLDSRANSGSNH------------SSPNNNG---LQSP--YD---- 48
           AS  + + +  Y FD   R+  GSN             SSPN+      Q P  Y     
Sbjct: 13  ASKAEANDSSMYGFDPPGRSGPGSNMIVNHASRGSLVPSSPNSMAAATTQPPPMYSVEPL 72

Query: 49  --------SEKEEI-LSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLD 99
                   SE++ + L  + IC   F FTD  ++  ++++KR  LL+L+   +S   +L 
Sbjct: 73  PLFRDVSVSERQSLFLRKLQICCFQFDFTDTLKNAREKEIKRQTLLELVDFIQSGAGKLT 132

Query: 100 DYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPL-WPHLQIVYDILLRLV 158
           +     ++ MIS N+FR LPP  S   TG  P D E         WPHLQ++Y++LLR +
Sbjct: 133 EVCQEEMVKMISVNIFRCLPPA-SHENTGQEPADLEEEEPYLEPSWPHLQLIYELLLRYI 191

Query: 159 L--HVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMN 216
           +    D K  + YIDH F+  LL LF++ED RER+ LK I HRIY KF  +R F+RKAMN
Sbjct: 192 VPSDTDTKVAKRYIDHSFVLRLLELFETEDPREREYLKTILHRIYGKFMVHRPFIRKAMN 251

Query: 217 DVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHR 276
            +F ++ +ETE+H GIGELLEI GSIINGF +P+KEEHKLFLIR LIPLHK K +  YH+
Sbjct: 252 HIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLIRALIPLHKPKPIAMYHQ 311

Query: 277 QLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLAL 336
           QL+YC+ QFV+K+  L   V RG+LK+WPVTNC KEVL +GELEE++++    +++R  +
Sbjct: 312 QLSYCIVQFVEKDYKLADTVIRGLLKFWPVTNCTKEVLFLGELEEVLEATQTVEFQRCMV 371

Query: 337 PLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKS 396
           PL  +I +CL+S N +VAERAL++WNNE  V +++ +   + P+I   +EKN++ HW+++
Sbjct: 372 PLFQQIARCLSSSNFQVAERALFLWNNEHVVGLIAQNRGVILPIIFASLEKNIESHWNQA 431

Query: 397 VKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIE 445
           V  L+ N+K M  +MDP L+ +C +  E +++ ++Q E +R+ +WRR++
Sbjct: 432 VHGLSANIKRMFMEMDPELFEECQQQYEEKQAKSKQVEEQRQNRWRRLD 480
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
225428100467 PREDICTED: serine/threonine protein phos 0.989 0.989 0.715 0.0
297744564 979 unnamed protein product [Vitis vinifera] 0.989 0.471 0.715 0.0
224103147464 predicted protein [Populus trichocarpa] 0.993 1.0 0.683 0.0
356534431457 PREDICTED: serine/threonine protein phos 0.886 0.905 0.684 1e-162
224080656385 predicted protein [Populus trichocarpa] 0.824 1.0 0.698 1e-155
147822738519 hypothetical protein VITISV_033562 [Viti 0.777 0.699 0.730 1e-153
356574139369 PREDICTED: LOW QUALITY PROTEIN: serine/t 0.768 0.972 0.668 1e-130
449458686427 PREDICTED: serine/threonine protein phos 0.890 0.974 0.512 1e-113
242050032471 hypothetical protein SORBIDRAFT_02g03151 0.918 0.910 0.459 1e-109
225448950502 PREDICTED: serine/threonine protein phos 0.858 0.798 0.462 1e-106
>gi|225428100|ref|XP_002278196.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform [Vitis vinifera] Back     alignment and taxonomy information
 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/468 (71%), Positives = 391/468 (83%), Gaps = 6/468 (1%)

Query: 1   MGGVRGSPVASSKKK-SSTLQYLFDLDSRANSGSNHSSPNNNGLQSPYDSEKEEILSAIS 59
           MG  R +P AS KKK ++TLQYLFDLDS++N G+ H S  N+G QS  DSE EE+LS I+
Sbjct: 1   MGVERNTPKASPKKKPTTTLQYLFDLDSKSN-GNGHFS--NSGKQSSLDSENEELLSIIT 57

Query: 60  ICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLP 119
            C  +FTFTDPSESP QQDLKR KL QLLS+ KS KK L D ILSHL++M+SANLFRPLP
Sbjct: 58  YCTFVFTFTDPSESPSQQDLKRLKLTQLLSLVKSTKKPLHDQILSHLVAMLSANLFRPLP 117

Query: 120 PPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLL 179
           P  +  +  DLP++E+  S+P P WPHLQIVY+ILLRLVL+ D K LRD+IDH F+ NLL
Sbjct: 118 PSSNASVIFDLPDEEDTASTPAPAWPHLQIVYEILLRLVLNTDAKALRDHIDHSFVLNLL 177

Query: 180 SLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIW 239
           SLFQSED RER+SLKN+YHRIY+KFTFYRSFMRKAMNDVFL Y FETE+ CGIG+LLEIW
Sbjct: 178 SLFQSEDPRERESLKNVYHRIYSKFTFYRSFMRKAMNDVFLHYVFETERPCGIGDLLEIW 237

Query: 240 GSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARG 299
           GSIINGFT+PLKEEHKLFL+RVLIPLHK KG+Q YHRQLAYCVSQFVQKEP LGG+V RG
Sbjct: 238 GSIINGFTIPLKEEHKLFLMRVLIPLHKPKGLQVYHRQLAYCVSQFVQKEPVLGGIVVRG 297

Query: 300 ILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALY 359
           ILKYWP+TNC+K+VLL+GELEELV+ IDP QYR+LALPL T+IT+CLNS NS+VAERALY
Sbjct: 298 ILKYWPITNCQKQVLLVGELEELVEIIDPEQYRKLALPLFTQITRCLNSWNSQVAERALY 357

Query: 360 VWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKC 419
           V NNEQF +M   ++++VFPVIVEGMEKNLK HWSKSV+QLT+ VKVMLE+M+P LYSKC
Sbjct: 358 VLNNEQFRKMAQEAMDEVFPVIVEGMEKNLKWHWSKSVRQLTQTVKVMLEEMEPCLYSKC 417

Query: 420 LEATEIRESAARQEEMKRKEKWRRIE--TLAAAKKQNQFLQPQQYIRV 465
           +   E+RESAA+QEE+KR+EKW RIE    AA   QNQFLQP   I V
Sbjct: 418 VINLELRESAAQQEEIKRREKWERIERAADAATAAQNQFLQPPHCICV 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744564|emb|CBI37826.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103147|ref|XP_002312943.1| predicted protein [Populus trichocarpa] gi|222849351|gb|EEE86898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356534431|ref|XP_003535758.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|224080656|ref|XP_002306198.1| predicted protein [Populus trichocarpa] gi|222849162|gb|EEE86709.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147822738|emb|CAN68296.1| hypothetical protein VITISV_033562 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574139|ref|XP_003555209.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|449458686|ref|XP_004147078.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Cucumis sativus] gi|449489731|ref|XP_004158399.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242050032|ref|XP_002462760.1| hypothetical protein SORBIDRAFT_02g031510 [Sorghum bicolor] gi|241926137|gb|EER99281.1| hypothetical protein SORBIDRAFT_02g031510 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|225448950|ref|XP_002268726.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.860 0.805 0.447 1.8e-94
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.847 0.8 0.443 6.1e-94
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.828 0.778 0.438 1.3e-93
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.865 0.821 0.411 1e-91
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.852 0.796 0.421 5.1e-90
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.862 0.738 0.418 3.6e-89
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.856 0.766 0.432 4.6e-89
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.850 0.832 0.435 6e-87
ASPGD|ASPL0000013095631 AN9467 [Emericella nidulans (t 0.869 0.643 0.403 1.7e-84
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.850 0.403 0.398 3.9e-83
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 182/407 (44%), Positives = 265/407 (65%)

Query:    49 SEKEEI-LSAISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLI 107
             SE++ + L  +  C  +F FTD  ++   +++KR  LL+L+   +S   ++ +     +I
Sbjct:    81 SERQTLFLRKLQNCCFLFDFTDTIKNARDKEIKRQTLLELVDFIQSGSSKISESCQEEMI 140

Query:   108 SMISANLFRPLPPPISTPITGDLPED-EELFSSPQPLWPHLQIVYDILLRLVLHVDP--K 164
              MIS N+FR LPP  S   TG  P D EE     +P WPHLQ+VY++LLR V+  D   K
Sbjct:   141 KMISVNIFRSLPPA-SHENTGQEPADPEEEEPYLEPSWPHLQLVYELLLRYVVSTDTDTK 199

Query:   165 TLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNF 224
               + YIDH F+  LL LF SED RER+ LK I HRIY KF  +R F+RKA+N++F ++ +
Sbjct:   200 VAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIY 259

Query:   225 ETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQ 284
             ETE+H GIGELLEI GSIINGF +P+KEEHKLFLIRVLIPLHK K +  YH+QL+YC+ Q
Sbjct:   260 ETERHSGIGELLEILGSIINGFALPMKEEHKLFLIRVLIPLHKPKPIVVYHQQLSYCIVQ 319

Query:   285 FVQKEPALGGLVARGILKYWPVTNCRKXXXXXXXXXXXXDSIDPAQYRRLALPLCTKITK 344
             FV+K+  L   V RG+LKYWPVTNC K            ++  P +++R  +PL  +I +
Sbjct:   320 FVEKDYKLADTVIRGLLKYWPVTNCSKENLFLGELEEVLEATQPVEFQRCMVPLFQQIGR 379

Query:   345 CLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENV 404
             CL S + +VAERAL++WNNE  V +++ +   + P+I   +EKN++ HW+++V  LT N+
Sbjct:   380 CLTSSHFQVAERALFLWNNEHIVGLIAQNRSVILPIIYPTLEKNIQSHWNQAVHGLTTNI 439

Query:   405 KVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAAAK 451
             K M  +MDP L+ +C    E +++ +++ E +R+  W+R+   AA +
Sbjct:   440 KKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAAAER 486
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000013095 AN9467 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O043752A5A_ARATHNo assigned EC number0.42640.93140.8787yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 1e-145
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 1e-42
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  421 bits (1085), Expect = e-145
 Identities = 173/410 (42%), Positives = 263/410 (64%), Gaps = 8/410 (1%)

Query: 43  LQSPYDSEKEEIL-SAISICNTIFTFTDPSESPEQQDLKRFKLLQLLS--ITKSPKKQLD 99
           L      E +++    +  C  I  F+DP+   + +++KR  L +++          +L 
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 100 DYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVL 159
           + +   +  MI+ N+FRPLPP  +  +    P+D+E F  P   WPHL +VY+ILLR + 
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPIPNPSL---DPDDDEPFLEPS--WPHLSLVYEILLRFIE 115

Query: 160 HVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVF 219
                 L+ YIDH F+  LL LF S D RERD LK   HRIY KF   R F+RKA+N + 
Sbjct: 116 SPPFDPLKKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINSIL 175

Query: 220 LQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLA 279
            ++ +ETEK  G+ ELLEI GSIINGF +PLKEEHK FL++VL+PLHKSK +  YH+QL+
Sbjct: 176 YRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQLS 235

Query: 280 YCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLC 339
           YCV QF++K+P+L   V RG+LK+WPVTN  KEVL + ELEE+++ I P +++++ +PL 
Sbjct: 236 YCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVPLF 295

Query: 340 TKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQ 399
             + +C++S + +VAERAL +WNNE FV ++S + + + P++   + +N K HW++SV+ 
Sbjct: 296 KILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVRN 355

Query: 400 LTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAA 449
           L  NV  +L ++DP+L+ +C    + +E+  +++E KRK+ W RI   AA
Sbjct: 356 LALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAAA 405

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 467
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 93.37
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 87.57
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 85.07
PF14500262 MMS19_N: Dos2-interacting transcription regulator 83.66
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 81.44
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 80.86
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 80.26
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-141  Score=1068.64  Aligned_cols=405  Identities=44%  Similarity=0.833  Sum_probs=399.7

Q ss_pred             CCCCCChhHHHHHHH-HHhccCccccccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 041109           42 GLQSPYDSEKEEILS-AISICNTIFTFTDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPP  120 (467)
Q Consensus        42 ~~~~~~~~~~~~l~~-Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~l~e~i~~~i~~Mi~~NiFR~lPp  120 (467)
                      +..|+|.+|+++||. |+++||++|||+||..|.++|++||+||.|++||+.++++++|+.+|+++++|+++||||++||
T Consensus        47 ~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nifR~lpp  126 (457)
T KOG2085|consen   47 SLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIFRTLPP  126 (457)
T ss_pred             ccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCc
Confidence            779999999999887 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCcchHHHHHHHHHHHhc--CCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 041109          121 PISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLH--VDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYH  198 (467)
Q Consensus       121 ~~~~~~~~~~~~edep~~~~e~sWpHLqlVY~ill~fi~s--~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLh  198 (467)
                      +.++++  +|+|||||+  +|++|||||+||++|+||++|  .|++.||+|||++||.+|+++||||||||||+|||+||
T Consensus       127 ~~n~~~--~d~eedEp~--le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~Lh  202 (457)
T KOG2085|consen  127 SVNPTG--FDYEEDEPV--LEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILH  202 (457)
T ss_pred             ccCCCc--CCccccCcc--cCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            999877  788999999  999999999999999999999  66999999999999999999999999999999999999


Q ss_pred             HHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHH
Q 041109          199 RIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQL  278 (467)
Q Consensus       199 rIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL  278 (467)
                      ||||||+++|+|||++|||+|++||||+++|+||+|||||+||||||||+||||||+.|+.|||||||++++++.||+||
T Consensus       203 rIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QL  282 (457)
T KOG2085|consen  203 RIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQL  282 (457)
T ss_pred             HHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHH
Q 041109          279 AYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERAL  358 (467)
Q Consensus       279 ~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL  358 (467)
                      +|||+||++|||+|++.||+||+||||+|||+||||||+||||||+.++|.+|+++++|||++||+|++|+|||||||||
T Consensus       283 aYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL  362 (457)
T KOG2085|consen  283 AYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERAL  362 (457)
T ss_pred             ceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041109          359 YVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRK  438 (467)
Q Consensus       359 ~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~  438 (467)
                      ++|||++|+++|++|.++|+|+|||+||+++++|||++|+++++||++++||||++||++|++.|++++.+++..+++|+
T Consensus       363 ~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~~~~~~~re  442 (457)
T KOG2085|consen  363 YLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKEKETEEKRE  442 (457)
T ss_pred             HHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 041109          439 EKWRRIETLAAA  450 (467)
Q Consensus       439 ~~W~~i~~~A~~  450 (467)
                      +.|++||++|+.
T Consensus       443 ~~W~~le~~~~~  454 (457)
T KOG2085|consen  443 ETWKRLEELAAE  454 (457)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999965

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 5e-82
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 2e-80
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 2e-80
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 3e-75
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 3e-72
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (771), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 158/412 (38%), Positives = 243/412 (58%), Gaps = 8/412 (1%)
Query: 46  PYDSEKEEILSAISICNTIFTF-TDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILS 104
           P D EK   +  +  C  +F F +DP    + +++KR  L +++      +  + + I  
Sbjct: 35  PADQEKL-FIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 93
Query: 105 HLISMISANLFRPLPPPISTPITGDL-PEDEELFSSPQPLWPHLQIVYDILLRLVLHVD- 162
            ++ M + N+FR LPP  S P   +  PE++E   + +  WPHLQ+VY+  LR +   D 
Sbjct: 94  EVVHMFAVNMFRTLPPS-SNPTGAEFDPEEDE--PTLEAAWPHLQLVYEFFLRFLESPDF 150
Query: 163 -PKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQ 221
            P   + YID +F+  LL LF SED RERD LK   HRIY KF   R+++RK +N++F +
Sbjct: 151 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 210
Query: 222 YNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYC 281
           + +ETE H GI ELLEI GSIINGF +PLKEEHK+FL++VL+PLHK K +  YH QLAYC
Sbjct: 211 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 270
Query: 282 VSQFVQKEPALGGLVARGILKYWPVTNCRKXXXXXXXXXXXXDSIDPAQYRRLALPLCTK 341
           V QF++K+  L   V   +LKYWP T+  K            D I+P+++ ++  PL  +
Sbjct: 271 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 330
Query: 342 ITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLT 401
           + KC++S + +VAERALY WNNE  + ++S +   + P++   + +N K HW+K++  L 
Sbjct: 331 LAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLI 390
Query: 402 ENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWRRIETLAAAKKQ 453
            N   +  +M+  L+  C +  +  +   + +  +R+E W +IE LA A  Q
Sbjct: 391 YNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQ 442
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 1e-137
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-137
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-117
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-05
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  402 bits (1034), Expect = e-137
 Identities = 161/437 (36%), Positives = 258/437 (59%), Gaps = 11/437 (2%)

Query: 27  SRANSGSNHSSPNNNGLQSPY-----DSEKEEI-LSAISICNTIFTF-TDPSESPEQQDL 79
           SR    + +S+     +   +      +++E++ +  +  C  +F F +DP    + +++
Sbjct: 9   SRMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEV 68

Query: 80  KRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSS 139
           KR  L +++      +  + + I   ++ M + N+FR LPP  +       PE++E    
Sbjct: 69  KRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLE 128

Query: 140 PQPLWPHLQIVYDILLRLVL--HVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIY 197
               WPHLQ+VY+  LR +      P   + YID +F+  LL LF SED RERD LK   
Sbjct: 129 AA--WPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTL 186

Query: 198 HRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLF 257
           HRIY KF   R+++RK +N++F ++ +ETE H GI ELLEI GSIINGF +PLKEEHK+F
Sbjct: 187 HRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIF 246

Query: 258 LIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIG 317
           L++VL+PLHK K +  YH QLAYCV QF++K+  L   V   +LKYWP T+  KEV+ + 
Sbjct: 247 LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLN 306

Query: 318 ELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDV 377
           ELEE++D I+P+++ ++  PL  ++ KC++S + +VAERALY WNNE  + ++S +   +
Sbjct: 307 ELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKI 366

Query: 378 FPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKR 437
            P++   + +N K HW+K++  L  N   +  +M+  L+  C +  +  +   + +  +R
Sbjct: 367 LPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKER 426

Query: 438 KEKWRRIETLAAAKKQN 454
           +E W +IE LA A  Q 
Sbjct: 427 EEAWVKIENLAKANPQV 443
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 95.97
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 95.17
1qgr_A 876 Protein (importin beta subunit); transport recepto 95.12
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 95.02
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 94.99
1qgr_A 876 Protein (importin beta subunit); transport recepto 94.75
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 94.2
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 93.67
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 93.63
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 93.33
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 92.25
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 90.21
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 89.22
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 88.26
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 86.2
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 83.34
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 83.01
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 81.72
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 80.71
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 80.49
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
Probab=100.00  E-value=3.6e-131  Score=1019.02  Aligned_cols=398  Identities=39%  Similarity=0.753  Sum_probs=391.0

Q ss_pred             ChhHHHHHHH-HHhccCccccc-cCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCC
Q 041109           47 YDSEKEEILS-AISICNTIFTF-TDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPIST  124 (467)
Q Consensus        47 ~~~~~~~l~~-Kl~~C~~ifDF-~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~l~e~i~~~i~~Mi~~NiFR~lPp~~~~  124 (467)
                      |++||++||. ||++||++||| +||.+|+++|++||++|+||++|++++++.+||++|+++++||++|||||+||++++
T Consensus         1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~   80 (403)
T 3fga_B            1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP   80 (403)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred             ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            5788998886 99999999999 899999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCcccccCCCCCCCcchHHHHHHHHHHHhc--CCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhh
Q 041109          125 PITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLH--VDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYA  202 (467)
Q Consensus       125 ~~~~~~~~edep~~~~e~sWpHLqlVY~ill~fi~s--~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~  202 (467)
                      ++..||||||||+  +|++|||||+||++|+||++|  .|++.+|+|||++||.+|+++|+||||||||+|||+||||||
T Consensus        81 ~~~~~d~eedep~--~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~  158 (403)
T 3fga_B           81 TGAEFDPEEDEPT--LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG  158 (403)
T ss_dssp             CSTTCCGGGCCCC--CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ccccCCccccccc--cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            8778999999999  999999999999999999999  569999999999999999999999999999999999999999


Q ss_pred             hhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHH
Q 041109          203 KFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCV  282 (467)
Q Consensus       203 kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv  282 (467)
                      ||+++|+|||++|+|+|++|+||+++|+||+|||||+||||||||+|||+||+.||.+||+|||++++++.||+||+||+
T Consensus       159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv  238 (403)
T 3fga_B          159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV  238 (403)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc
Q 041109          283 SQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN  362 (467)
Q Consensus       283 ~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~  362 (467)
                      +||++|||+|+..+++||+||||+|||+|||+||+|+++|++.++|++|.+++.|+|++||+|++|+|||||||||++|+
T Consensus       239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn  318 (403)
T 3fga_B          239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN  318 (403)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred             HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041109          363 NEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWR  442 (467)
Q Consensus       363 N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~  442 (467)
                      |+++++++++|++.|+|+++|+|++++++|||++|+++|.+|+++|||||+++|++|+++|+++++++++++++|+++|+
T Consensus       319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~  398 (403)
T 3fga_B          319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV  398 (403)
T ss_dssp             CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 041109          443 RIET  446 (467)
Q Consensus       443 ~i~~  446 (467)
                      +|++
T Consensus       399 ~~~~  402 (403)
T 3fga_B          399 KIEN  402 (403)
T ss_dssp             TCSC
T ss_pred             HHhc
Confidence            9864
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 467
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-122
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  359 bits (922), Expect = e-122
 Identities = 139/338 (41%), Positives = 214/338 (63%), Gaps = 6/338 (1%)

Query: 49  SEKEEI-LSAISICNTIFTF-TDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHL 106
           +++E++ +  +  C  +F F +DP    + +++KR  L +++      +  + + I   +
Sbjct: 7   ADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEV 66

Query: 107 ISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVL--HVDPK 164
           + M + N+FR LPP  +       PE++E        WPHLQ+VY+  LR +      P 
Sbjct: 67  VHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAA--WPHLQLVYEFFLRFLESPDFQPN 124

Query: 165 TLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNF 224
             + YID +F+  LL LF SED RERD LK   HRIY KF   R+++RK +N++F ++ +
Sbjct: 125 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY 184

Query: 225 ETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQ 284
           ETE H GI ELLEI GSIINGF +PLKEEHK+FL++VL+PLHK K +  YH QLAYCV Q
Sbjct: 185 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQ 244

Query: 285 FVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITK 344
           F++K+  L   V   +LKYWP T+  KEV+ + ELEE++D I+P+++ ++  PL  ++ K
Sbjct: 245 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAK 304

Query: 345 CLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIV 382
           C++S + +VAERALY WNNE  + ++S +   + P++ 
Sbjct: 305 CVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMF 342

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.36
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 94.95
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.86
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.95
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 92.59
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 91.22
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 89.04
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 86.34
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 84.59
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 83.53
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-110  Score=849.28  Aligned_cols=339  Identities=41%  Similarity=0.789  Sum_probs=318.7

Q ss_pred             CCCCChhHHHHHHH-HHhccCccccc-cCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 041109           43 LQSPYDSEKEEILS-AISICNTIFTF-TDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPP  120 (467)
Q Consensus        43 ~~~~~~~~~~~l~~-Kl~~C~~ifDF-~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~l~e~i~~~i~~Mi~~NiFR~lPp  120 (467)
                      ++|+|++|+++||. ||++||++||| +||++|+++|++||++|+||+++++++++.+||++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            47899999999987 99999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCcchHHHHHHHHHHHhc--CCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 041109          121 PISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLH--VDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYH  198 (467)
Q Consensus       121 ~~~~~~~~~~~~edep~~~~e~sWpHLqlVY~ill~fi~s--~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLh  198 (467)
                      .+++.+..+++|||+|+  .|++|||||+||++|+||+++  .|++.+++|||++|+.+|+++|+||||||||+|+++||
T Consensus        81 ~~~~~~~~~~~e~d~~~--~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~  158 (343)
T d2jaka1          81 SSNPTGAEFDPEEDEPT--LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH  158 (343)
T ss_dssp             ---------------CC--CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCccccccCccccccc--cCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            98887777889999999  999999999999999999999  66899999999999999999999999999999999999


Q ss_pred             HHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHH
Q 041109          199 RIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQL  278 (467)
Q Consensus       199 rIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL  278 (467)
                      ||||||+++|++||++|+++|++|+||+++|+||+|||||+|||||||++|||+||+.|+.++|+|||++++++.||+||
T Consensus       159 ~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL  238 (343)
T d2jaka1         159 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL  238 (343)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHH
Q 041109          279 AYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERAL  358 (467)
Q Consensus       279 ~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL  358 (467)
                      +||+++|++|||+|+..+++||+||||+||++|||+||+||++|++.+++++|++++.|+|++||+|++|+|+|||||||
T Consensus       239 ~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl  318 (343)
T d2jaka1         239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL  318 (343)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHhhccccchhhhhH
Q 041109          359 YVWNNEQFVRMVSSSLEDVFPVIVE  383 (467)
Q Consensus       359 ~~w~N~~~~~li~~~~~~i~Pii~~  383 (467)
                      ++|+|+++++++++|++.|+|+|+|
T Consensus       319 ~~w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         319 YYWNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGGGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HHHCCHHHHHHHHhCccceEeeeCC
Confidence            9999999999999999999999987
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure