Citrus Sinensis ID: 041149

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MDKLKLTQLGERIKTGGAQMGRIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGESEDLAYLPVYRQTYMSLKERSVPPPVEDGNLPPTQYSLESYINQEPLSPSESYPIPETGLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSLDLLSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVQSGEPAPGKSDTPDANLATRVGAHSEPKAADTSEADLPAHDGTHIEPKTLNSGEANLPAHIGVHDETKAADSPKGEKH
ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MDKLKLTQLGEriktggaqmgriVSGKVKEmlqaptpeskmvdeatletleepnwgmnMRICALinseefsgSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMienpqmdpgnRSRALQLIRAWgesedlaylPVYRQTYMslkersvpppvedgnlpptqyslesyinqeplspsesypipetglhgadrtsfaynygslsvdekKEFLVVTRNSLDLLSSILntetepkpikedLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVqsgepapgksdtpdanlatrvgahsepkaadtseadlpahdgthiepktlnsgeanlpahigvhdetkaadspkgekh
mdklkltqlgeriktggaqmgrivsgKVKEMLqaptpeskmvdeatletleepnwgmNMRICALINSEEFSGSEIVKAIkkkisgksvvSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIenpqmdpgnrSRALQLIRAWgesedlayLPVYRQTYMSLKERSVPPPVEDGNLPPTQYSLESYINQEPLSPSESYPIPETGLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSLDLLSsilntetepkpikEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVQsgepapgksdtpdANLATRVGAHSEPKAADTSEADLPAHDGTHIEPKTLNSGEANLPahigvhdetkaadspkgekh
MDKLKLTQLGERIKTGGAQMGRIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEivkaikkkisgksvvsQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGESEDLAYLPVYRQTYMSLKERSVPPPVEDGNLPPTQYSLESYINQEPLSPSESYPIPETGLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSLDLLSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVQSGEPAPGKSDTPDANLATRVGAHSEPKAADTSEADLPAHDGTHIEPKTLNSGEANLPAHIGVHDETKAADSPKGEKH
***************************************************EPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVR**************ALQLIRAWGESEDLAYLPVYRQTYMS***********************************************DRTSFAYNYGSLSVDEKKEFLVVTRNSLDLLSSILN************************PVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEE***********************************************************************************
********************************QAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIEN*****GNRSRALQLIRAWGESEDLAYLPVYRQTYMSLKE***********************************************************************LDL********************SMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYE************************************************************************************
MDKLKLTQLGERIKTGGAQMGRIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGESEDLAYLPVYRQTYMSLKERSVPPPVEDGNLPPTQYSLESYINQEPLSPSESYPIPETGLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSLDLLSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEEL*****************DANLATRV************EADLPAHDGTHIEPKTLNSGEANLPAHIGVHD*************
*DKLKLTQLGERIKTGGAQMGRIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGESEDLAYLPVYRQTYMSLKERSVPPPVEDGNLPPTQY***********************************YGSLSVDEKKEFLVVTRNSLDLLSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEA********************************************************************************
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MDKLKLTQLGERIKTGGAQMGRIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGESEDLAYLPVYRQTYMSLKERSVPPPVEDGNLPPTQYSLESYINQEPLSPSESYPIPETGLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSLDLLSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVQSGEPAPGKSDTPDANLATRVGAHSEPKAADTSEADLPAHDGTHIEPKTLNSGEANLPAHIGVHDETKAADSPKGEKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
Q5SRX1 507 TOM1-like protein 2 OS=Mu yes no 0.681 0.522 0.269 6e-13
Q68FJ8 507 TOM1-like protein 2 OS=Xe N/A no 0.686 0.526 0.253 1e-11
Q54GH3 663 Target of Myb protein 1 O yes no 0.712 0.417 0.247 2e-11
Q6ZVM7 507 TOM1-like protein 2 OS=Ho yes no 0.678 0.520 0.265 4e-11
O88746 492 Target of Myb protein 1 O no no 0.714 0.565 0.256 6e-11
O60784 492 Target of Myb protein 1 O no no 0.686 0.542 0.255 4e-10
F1LM81 475 TOM1-like protein 1 OS=Ra no no 0.339 0.277 0.289 6e-09
Q923U0 474 TOM1-like protein 1 OS=Mu no no 0.339 0.278 0.275 2e-08
Q99LI8 775 Hepatocyte growth factor- no no 0.277 0.139 0.290 3e-08
Q9JJ50 776 Hepatocyte growth factor- no no 0.277 0.139 0.290 4e-08
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 Back     alignment and function desciption
 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 146/304 (48%), Gaps = 39/304 (12%)

Query: 36  TPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISG-KSVVSQRLS 94
           TP  + +++AT  +L+  +W +NM IC +IN  E    + ++A+KK++SG ++     L+
Sbjct: 11  TPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLA 70

Query: 95  LDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGN--RSRALQLIRAWGE---- 147
           L +LE C  NC   F   VA+   +D ++  I +P+ +P    + + L LI+AW +    
Sbjct: 71  LTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS 130

Query: 148 SEDLAYLPVYRQTYMSLKERSVPPPVEDGN-LPPTQYSLESYINQEP---LSPSESYPIP 203
           S DL  +      Y  LK R +  P+ D + L P      S    +P   +  S++ P  
Sbjct: 131 SPDLTGV---VHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRT 187

Query: 204 ETGLHGADRTSFAYNYGSLS---------VDEKKEFLVVTRNSLDLLSSILNTE------ 248
             G + +   +   +Y +L          +    E +   R+ LD++    NT+      
Sbjct: 188 TAGTYSSPPPA---SYSTLQAPALSVTGPITANSEQIARLRSELDIVRG--NTKVMSEML 242

Query: 249 TEPKPIKEDLT-VSMLEKCKESQPVIQ-RIIE--STTDDEAMLFEALNLHDELQLVISRY 304
           TE  P +ED + + +L++   +   +Q RI+E  S   +E +  E L+++D+L  V  RY
Sbjct: 243 TEMVPGQEDSSDLELLQELNRTCRAMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRY 302

Query: 305 EELE 308
           E  E
Sbjct: 303 ERFE 306
Probable role in protein transport. May regulate growth factor-induced mitogenic signaling.
Mus musculus (taxid: 10090)
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 Back     alignment and function description
>sp|Q54GH3|TOM1_DICDI Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 Back     alignment and function description
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1 Back     alignment and function description
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 Back     alignment and function description
>sp|F1LM81|TM1L1_RAT TOM1-like protein 1 OS=Rattus norvegicus GN=Tom1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q923U0|TM1L1_MOUSE TOM1-like protein 1 OS=Mus musculus GN=Tom1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2 Back     alignment and function description
>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
225438117359 PREDICTED: uncharacterized protein LOC10 0.794 0.860 0.770 1e-141
297744154 503 unnamed protein product [Vitis vinifera] 0.794 0.614 0.770 1e-141
224062139304 predicted protein [Populus trichocarpa] 0.778 0.996 0.802 1e-140
255582491378 protein transporter, putative [Ricinus c 0.907 0.933 0.686 1e-137
356570650397 PREDICTED: target of Myb protein 1-like 0.886 0.869 0.665 1e-126
356505025401 PREDICTED: target of Myb protein 1-like 0.817 0.793 0.672 1e-122
18390626383 ENTH/VHS/GAT family protein [Arabidopsis 0.781 0.793 0.659 1e-109
255641411302 unknown [Glycine max] 0.727 0.937 0.681 1e-109
297843420383 VHS domain-containing protein [Arabidops 0.781 0.793 0.652 1e-108
42571359279 ENTH/VHS/GAT family protein [Arabidopsis 0.683 0.953 0.620 2e-86
>gi|225438117|ref|XP_002278050.1| PREDICTED: uncharacterized protein LOC100251552 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/309 (77%), Positives = 279/309 (90%)

Query: 1   MDKLKLTQLGERIKTGGAQMGRIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMR 60
           MDKLKL  LGER+KTGGAQMGR+VSGKVKE+LQ PT ESKMVDEAT E+L +PNWGMN+R
Sbjct: 1   MDKLKLASLGERLKTGGAQMGRMVSGKVKEILQTPTQESKMVDEATSESLSDPNWGMNLR 60

Query: 61  ICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDE 120
           ICA+INSEEFSG+EIV+AIKKKIS K+VVSQRLSLDLLE C+MNCEKVFSEVASEK+LD+
Sbjct: 61  ICAMINSEEFSGAEIVRAIKKKISSKNVVSQRLSLDLLEVCSMNCEKVFSEVASEKLLDD 120

Query: 121 MVRMIENPQMDPGNRSRALQLIRAWGESEDLAYLPVYRQTYMSLKERSVPPPVEDGNLPP 180
           MVRMI+NPQ D  N+ RALQLI+AWGESEDLAYLPV+RQTYMS+K    PPPV+DG+ PP
Sbjct: 121 MVRMIDNPQTDHTNKERALQLIQAWGESEDLAYLPVFRQTYMSVKRSGTPPPVQDGSSPP 180

Query: 181 TQYSLESYINQEPLSPSESYPIPETGLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSLDL 240
             YSLESY++Q+PLSP  SYPIP+ GLH AD T+F+YNYG LS+ EKKEFL++TRNSL+L
Sbjct: 181 IPYSLESYVHQQPLSPPGSYPIPDAGLHRADSTAFSYNYGILSMKEKKEFLLITRNSLEL 240

Query: 241 LSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLV 300
           LSSIL+++TEPKPIK+DLTVSM+EKCK+SQPV+QRI+EST +DE MLFEAL LHDELQ V
Sbjct: 241 LSSILDSQTEPKPIKDDLTVSMVEKCKQSQPVVQRIVESTINDEGMLFEALYLHDELQQV 300

Query: 301 ISRYEELEA 309
           IS+YEE+EA
Sbjct: 301 ISKYEEMEA 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744154|emb|CBI37124.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224062139|ref|XP_002300774.1| predicted protein [Populus trichocarpa] gi|222842500|gb|EEE80047.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582491|ref|XP_002532031.1| protein transporter, putative [Ricinus communis] gi|223528301|gb|EEF30347.1| protein transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356570650|ref|XP_003553498.1| PREDICTED: target of Myb protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356505025|ref|XP_003521293.1| PREDICTED: target of Myb protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|18390626|ref|NP_563762.1| ENTH/VHS/GAT family protein [Arabidopsis thaliana] gi|8844126|gb|AAF80218.1|AC025290_7 Contains similarity to an ADP-ribosylation factor binding protein GGA1 from Homo sapiens gb|AF190862 and contains a VHS PF|00790 domain. EST gb|BE037588 comes from this gene [Arabidopsis thaliana] gi|15450711|gb|AAK96627.1| At1g06210/F9P14_4 [Arabidopsis thaliana] gi|23308355|gb|AAN18147.1| At1g06210/F9P14_4 [Arabidopsis thaliana] gi|332189839|gb|AEE27960.1| ENTH/VHS/GAT family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255641411|gb|ACU20982.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297843420|ref|XP_002889591.1| VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335433|gb|EFH65850.1| VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42571359|ref|NP_973770.1| ENTH/VHS/GAT family protein [Arabidopsis thaliana] gi|332189838|gb|AEE27959.1| ENTH/VHS/GAT family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2038545383 AT1G06210 [Arabidopsis thalian 0.825 0.838 0.590 3.8e-94
TAIR|locus:2148121407 AT5G16880 "AT5G16880" [Arabido 0.789 0.754 0.406 7.3e-59
TAIR|locus:2180982 542 AT5G01760 [Arabidopsis thalian 0.753 0.540 0.273 4.9e-19
TAIR|locus:2057140 671 AT2G38410 [Arabidopsis thalian 0.467 0.271 0.248 1.2e-08
TAIR|locus:2025297 446 AT1G76970 "AT1G76970" [Arabido 0.627 0.547 0.262 2.3e-16
TAIR|locus:2027037 506 AT1G21380 [Arabidopsis thalian 0.676 0.519 0.252 4.3e-16
TAIR|locus:2077808 607 AT3G08790 [Arabidopsis thalian 0.722 0.462 0.259 1.5e-15
ZFIN|ZDB-GENE-060721-1476 tom1 "target of myb1 (chicken) 0.768 0.628 0.246 5.4e-15
DICTYBASE|DDB_G0290163 663 tom1 "GAT domain-containing pr 0.861 0.505 0.220 9.5e-13
UNIPROTKB|A5PK10390 TOM1L2 "Uncharacterized protei 0.714 0.712 0.25 7.1e-12
TAIR|locus:2038545 AT1G06210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 195/330 (59%), Positives = 245/330 (74%)

Query:     1 MDKLKLTQLGERIKTGGAQMGRIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMR 60
             MDKLK+ + GE++KTGGAQM R+VS KVK+MLQAPT ESKMVDEATLETLEEPNWGMNMR
Sbjct:     1 MDKLKIAEWGEKLKTGGAQMSRMVSEKVKDMLQAPTLESKMVDEATLETLEEPNWGMNMR 60

Query:    61 ICALINSEEFSGSEXXXXXXXXXXXXXXXXQRLSLDLLEACAMNCEKVFSEVASEKVLDE 120
             ICA IN++EF+G+E                QRLSL+LLEACAMNCEKVFSEVASEKVLDE
Sbjct:    61 ICAQINNDEFNGTEIVRAIKRKISGKSPVSQRLSLELLEACAMNCEKVFSEVASEKVLDE 120

Query:   121 MVRMIENPQMDPGNRSRALQLIRAWGESEDLAYLPVYRQTYMSLK-ERSVPPPVEDGNLP 179
             MV +I+N + D  NR RA QLIRAWG+S+DL YLPV+ QTYMSL+ E  +    E+ ++P
Sbjct:   121 MVWLIKNGEADSENRKRAFQLIRAWGQSQDLTYLPVFHQTYMSLEGENGLHARGEENSMP 180

Query:   180 PTQYSLESYINQE-PLSPSESYPIPETGLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSL 238
               Q SLES + +  P+ P  SYP+P       D     YN+G+LS+ +KKE + +TRNSL
Sbjct:   181 G-QSSLESLMQRPVPVPPPGSYPVPNQEQALGDDDGLDYNFGNLSIKDKKEQIEITRNSL 239

Query:   239 DLLSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQ 298
             +LLSS+LNTE +P   ++DLTVS++EKCK+SQP+IQ IIESTTDDE +LFEAL+L+DELQ
Sbjct:   240 ELLSSMLNTEGKPNHTEDDLTVSLMEKCKQSQPLIQMIIESTTDDEGVLFEALHLNDELQ 299

Query:   299 LVISRYE-----ELEAAVQSGEPAPGKSDT 323
              V+S Y+     E +A++   E + G  DT
Sbjct:   300 QVLSSYKKPDETEKKASIVEQESS-GSKDT 328
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005795 "Golgi stack" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS
GO:0008565 "protein transporter activity" evidence=ISS
TAIR|locus:2148121 AT5G16880 "AT5G16880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180982 AT5G01760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057140 AT2G38410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025297 AT1G76970 "AT1G76970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027037 AT1G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077808 AT3G08790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060721-1 tom1 "target of myb1 (chicken)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290163 tom1 "GAT domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A5PK10 TOM1L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
cd03561133 cd03561, VHS, VHS domain family; The VHS domain is 3e-40
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 3e-22
pfam00790136 pfam00790, VHS, VHS domain 3e-18
cd03565141 cd03565, VHS_Tom1, VHS domain family, Tom1 subfami 3e-17
cd03569142 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs an 2e-14
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 9e-13
cd03568144 cd03568, VHS_STAM, VHS domain family, STAM subfami 7e-11
pfam0312799 pfam03127, GAT, GAT domain 2e-09
cd03567139 cd03567, VHS_GGA, VHS domain family, GGA subfamily 8e-07
>gnl|CDD|239620 cd03561, VHS, VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information 
 Score =  138 bits (351), Expect = 3e-40
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 4/132 (3%)

Query: 39  SKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLL 98
           + +++ AT  +LEEP+W +N+ +C LIN +     E  +AI+KKI   +   Q L+L LL
Sbjct: 2   TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLL 61

Query: 99  EACAMNCEK-VFSEVASEKVLDEMVRMIENPQM-DPGNRSRALQLIRAWGES--EDLAYL 154
           E    NC K    +VA ++ L E+V++ +N    DP  R +AL+LI AW ES       L
Sbjct: 62  ELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDL 121

Query: 155 PVYRQTYMSLKE 166
           P     Y  LK 
Sbjct: 122 PGIEDAYKLLKR 133

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general membrane targeting/cargo recognition role in vesicular trafficking. Length = 133
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>gnl|CDD|216121 pfam00790, VHS, VHS domain Back     alignment and domain information
>gnl|CDD|239623 cd03565, VHS_Tom1, VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>gnl|CDD|239626 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|239625 cd03568, VHS_STAM, VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>gnl|CDD|190532 pfam03127, GAT, GAT domain Back     alignment and domain information
>gnl|CDD|239624 cd03567, VHS_GGA, VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
KOG1087 470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 100.0
KOG1086 594 consensus Cytosolic sorting protein/ADP-ribosylati 100.0
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 100.0
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 100.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 100.0
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 100.0
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 100.0
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 100.0
KOG2199 462 consensus Signal transducing adaptor protein STAM/ 100.0
cd03561133 VHS VHS domain family; The VHS domain is present i 100.0
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.93
KOG1818 634 consensus Membrane trafficking and cell signaling 99.89
PF03127100 GAT: GAT domain; InterPro: IPR004152 The GAT domai 99.82
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 98.07
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.95
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 97.83
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 97.7
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 97.65
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 97.22
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.17
smart00582121 RPR domain present in proteins, which are involved 96.67
KOG0251 491 consensus Clathrin assembly protein AP180 and rela 95.56
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 92.39
KOG2057 499 consensus Predicted equilibrative nucleoside trans 89.26
KOG2374 661 consensus Uncharacterized conserved protein [Funct 87.5
PF1221096 Hrs_helical: Hepatocyte growth factor-regulated ty 86.51
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 84.62
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 81.65
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 80.64
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-57  Score=460.64  Aligned_cols=268  Identities=34%  Similarity=0.491  Sum_probs=223.3

Q ss_pred             hHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccH
Q 041149           37 PESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASE  115 (389)
Q Consensus        37 ~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~  115 (389)
                      ++..+|+|||++.+.+|||+.||+|||+||.+..+++||+|+|+|||++++++||++||+|||+||||||+.|| +||++
T Consensus         1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k   80 (470)
T KOG1087|consen    1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK   80 (470)
T ss_pred             ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC--CCCCCchHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccccCCCC
Q 041149          116 KVLDEMVRMIENPQMDPGNRSRALQLIRAWGES--EDLAYLPVYRQTYMSLKERSVPPPVEDGNLPPTQYSLESYINQEP  193 (389)
Q Consensus       116 ~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~--~~~~~l~~i~~~Y~~Lk~~Gv~FP~~~~~~~~~~~~~~s~~~~~~  193 (389)
                      +||++|++++++...+..||+|||.||+.|+++  +...+++.|..+|++|+++||.||..+.+..++++++.+....++
T Consensus        81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~  160 (470)
T KOG1087|consen   81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLRPAPE  160 (470)
T ss_pred             HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCCCCCC
Confidence            999999999987558889999999999999999  547889999999999999999999999988877655433322111


Q ss_pred             CCCCCCCCCCCC----CCCCCCCccccccCCCCChhHHHHHHHHHHhHHHHHHHHHhhCCCCCCC--chhHHHHHHHHHH
Q 041149          194 LSPSESYPIPET----GLHGADRTSFAYNYGSLSVDEKKEFLVVTRNSLDLLSSILNTETEPKPI--KEDLTVSMLEKCK  267 (389)
Q Consensus       194 ~~p~~~~~~~~~----~~~~p~d~~~~ani~~~~~ek~~~eLe~vk~n~~LL~emL~~~~~~~~~--~ddli~EL~~~Cr  267 (389)
                      ... .+++....    ....+.    +..........+.++|++|++++.||+|||.++.++...  ++|++++|+++||
T Consensus       161 ~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr  235 (470)
T KOG1087|consen  161 PQE-QSGPPNEANASMKSMAGY----PTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCR  235 (470)
T ss_pred             chh-hcCCcccccccccccccc----chhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHH
Confidence            000 01110000    000000    000011122346789999999999999999999887654  5689999999999


Q ss_pred             HHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 041149          268 ESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAA  310 (389)
Q Consensus       268 ~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~~~  310 (389)
                      .+|+||++||++ ..||++|.++|++||+|++||.+|+++..|
T Consensus       236 ~~q~rv~~Li~~-~~DE~ll~~lL~lND~L~~vL~~ye~~~~g  277 (470)
T KOG1087|consen  236 SKQRRVMHLIEE-TSDEELLCELLKLNDELQRVLERYERIASG  277 (470)
T ss_pred             HHHHHHHHHHHH-hccHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999999997 459999999999999999999999999988

>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3 Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2374 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1elk_A157 Vhs Domain Of Tom1 Protein From H. Sapiens Length = 1e-04
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens Length = 157 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 36  TPESKMVDEATLETLEEPNWGMNMRICALIN-SEEFSGSEXXXXXXXXXXXXXXXXQRLS 94
           +P  + +++AT  +L+  +W +NM IC +IN +EE                       L+
Sbjct: 15  SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLA 74
Query: 95  LDLLEACAMNCEKVFSE-VASEKVLDEMVRMIENPQMDPGN--RSRALQLIRAWGES 148
           L +LE C  NC   F   VAS+  ++ ++     P+ +P      + L LI++W ++
Sbjct: 75  LTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 1e-34
3g2s_A149 C-terminal fragment of sortilin-related receptor; 1e-33
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 2e-32
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 9e-32
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 2e-31
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 2e-31
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 7e-31
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 1e-29
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 2e-28
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 2e-14
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 8e-14
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 6e-12
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 6e-12
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
 Score =  125 bits (314), Expect = 1e-34
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 4/160 (2%)

Query: 25  SGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKIS 84
           SG     L    P  + V++AT E     +W + M IC  + S      + +KAI K+++
Sbjct: 3   SGSSGMPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVN 62

Query: 85  GKSVVSQRLSLDLLEACAMNCEKVF-SEVASEKVLDEMVRMIENPQMDPGNRSRALQLIR 143
            K       +L LL AC  NC K+F  EV S     E+  +I   +  P    +   L+ 
Sbjct: 63  HKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI-KNKAHPKVCEKLKSLMV 121

Query: 144 AWGES-EDLAYLPVYRQTYMSLKERSVP-PPVEDGNLPPT 181
            W E  +      +   T  S+KE  +  PP       P+
Sbjct: 122 EWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQTSGPS 161
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 100.0
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 100.0
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 100.0
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 100.0
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 100.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 100.0
3g2s_A149 C-terminal fragment of sortilin-related receptor; 100.0
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 100.0
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 100.0
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 99.85
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 99.85
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 99.85
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 99.85
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 99.82
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 97.96
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 97.94
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 97.86
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 97.86
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 97.59
2pjw_V91 Vacuolar protein sorting-associated protein 27; GA 97.47
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 97.4
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 96.95
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 96.43
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 96.12
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 94.96
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 94.44
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 94.25
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 93.4
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 91.2
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 91.09
3f1i_H98 Hepatocyte growth factor-regulated tyrosine kinas 89.91
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 87.87
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 87.22
3clj_A157 Protein NRD1; CTD-interacting domain, nucleus, pho 86.09
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 84.73
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 84.26
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 81.16
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 80.36
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
Probab=100.00  E-value=4.1e-44  Score=313.85  Aligned_cols=138  Identities=24%  Similarity=0.439  Sum_probs=133.5

Q ss_pred             cCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-
Q 041149           32 LQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-  110 (389)
Q Consensus        32 f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-  110 (389)
                      |+ ++||+++|++|||+.+.++||++|++|||+||+++++|++|+|+|+|||+|+||++|++||+|||+||+|||++|| 
T Consensus         1 ~~-~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~   79 (140)
T 3ldz_A            1 FA-TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHL   79 (140)
T ss_dssp             CC-CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CC-CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence            44 7999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCC
Q 041149          111 EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPP  172 (389)
Q Consensus       111 evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP  172 (389)
                      +|++++|+++|+++++  .+++.||+||+++|+.|+.+ ++.++|..|.++|++||++||.||
T Consensus        80 evas~~Fl~el~~l~~--~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP  140 (140)
T 3ldz_A           80 EVCSRDFASEVSNVLN--KGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFP  140 (140)
T ss_dssp             HHSSHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTTCCCC
T ss_pred             HHhhHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHccCcCc
Confidence            9999999999999996  47889999999999999999 888999999999999999999998
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d1ujka_145 a.118.9.2 (A:) ADP-ribosylation factor binding pro 9e-35
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 9e-34
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 2e-33
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 5e-33
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 2e-31
d1wr6a190 a.7.8.1 (A:211-300) ADP-ribosylation factor bindin 2e-17
d1o3xa_112 a.7.8.1 (A:) ADP-ribosylation factor binding prote 5e-14
d1wrda193 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 1e-13
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 4e-04
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 9e-35
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 7/143 (4%)

Query: 32  LQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQ 91
              P      ++ AT    +E +W      C  +N +        + +  KI        
Sbjct: 3   AMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEA 62

Query: 92  RLSLDLLEACAMNCEKVF-SEVASEKVLDEMVRMIE----NPQMDPGNRSRALQLIRAWG 146
             +L +LE C  +C K F  EV   + L+E+++++       +     +++ L+L+ +W 
Sbjct: 63  IQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW- 121

Query: 147 ESEDLAYLPVYRQTYMSLKERSV 169
            +  L       + Y  LK++ +
Sbjct: 122 -TVGLPEEVKIAEAYQMLKKQGI 143
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 100.0
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 100.0
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 100.0
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 100.0
d1wrda193 Target of Myb protein 1, TOM1 {Human (Homo sapiens 99.87
d1wr6a190 ADP-ribosylation factor binding protein Gga3 {Huma 99.84
d1o3xa_112 ADP-ribosylation factor binding protein Gga1 {Huma 99.83
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 98.88
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 97.59
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 97.53
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.5
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 81.99
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.1e-43  Score=305.94  Aligned_cols=142  Identities=24%  Similarity=0.345  Sum_probs=136.8

Q ss_pred             hcCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh
Q 041149           31 MLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS  110 (389)
Q Consensus        31 ~f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~  110 (389)
                      ||+  |+|+.+|++||++.+.++||++|++|||+||+++.+|++|+++|+|||+|+||++|++||+|||+||+|||..||
T Consensus         1 ~~~--s~~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~   78 (145)
T d1dvpa1           1 MFR--SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVH   78 (145)
T ss_dssp             CCC--SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCc--chHHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHH
Confidence            787  789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCCCCC
Q 041149          111 -EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPPVED  175 (389)
Q Consensus       111 -evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP~~~  175 (389)
                       +|++++|+++|++++.+ .++..||+||+++|+.|+.+ ++.++|+.|.++|+.||++||.||+.+
T Consensus        79 ~~i~s~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk~~G~~FP~l~  144 (145)
T d1dvpa1          79 EEVFTKENCEMFSSFLES-TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELR  144 (145)
T ss_dssp             HHHSSHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHhhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHCCCCCcCCC
Confidence             89999999999999974 77889999999999999999 888999999999999999999999865
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure