Citrus Sinensis ID: 041163
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNL7 | 582 | Peptide transporter PTR3- | yes | no | 0.966 | 0.802 | 0.695 | 0.0 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.962 | 0.793 | 0.644 | 1e-170 | |
| Q8VZR7 | 583 | Probable peptide/nitrate | no | no | 0.937 | 0.777 | 0.497 | 1e-123 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.933 | 0.791 | 0.447 | 1e-113 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.939 | 0.796 | 0.443 | 1e-107 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.919 | 0.758 | 0.427 | 1e-106 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.908 | 0.744 | 0.425 | 1e-102 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.896 | 0.780 | 0.412 | 1e-101 | |
| Q9M331 | 602 | Probable peptide/nitrate | no | no | 0.939 | 0.754 | 0.405 | 1e-96 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.844 | 0.748 | 0.416 | 1e-92 |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/469 (69%), Positives = 387/469 (82%), Gaps = 2/469 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM+VLTLSV++ G+KPP C N+++C KAS LQL FF ALYTLA+GTGGTKPNI TI
Sbjct: 112 GMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD F+PKEK K SFFNWWMFSIFFGTL NT LVY+QD+VGW LGYGLPTLGLAIS
Sbjct: 172 ADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAIS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I IFL GTPFYRHK PTGSPFT+MA+VIVA+ RK N P+ D +EL Y +KG +
Sbjct: 232 ITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAF 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I T +LRF ++A++KTG+ + W LC+ T+VEETKQML M+P+L FVPS MLAQINT
Sbjct: 292 PIHPTPSLRFLDRASLKTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINT 351
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFVKQGTTLDR + SF IPPASL+GFVTLSML+ +VLYDR FV+ITR++T NPRGITLL
Sbjct: 352 LFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLL 411
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEK-GQQVPLTIFILLPQFVLMGTADA 359
QRMGIGL+ HI+IM++AS TERYRL VA DHG++ + G ++PLTIF LLPQFVLMG AD+
Sbjct: 412 QRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADS 471
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
FLEVAK+EFFYDQAPESMKSLGTSYS T+L +GNF+SSFLLSTVS+ TK+ G +GWILNN
Sbjct: 472 FLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNN 530
Query: 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELK 468
LN S LDYYY FFA+LN++NFV FLVV KFYVY+ EV+DS++V E+K
Sbjct: 531 LNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579
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Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1539), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/467 (64%), Positives = 367/467 (78%), Gaps = 2/467 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLSVSL GLKPP C N+++C KAS +QL FF ALYTLA+GTGGTKPNI TI
Sbjct: 112 GMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD+F+PK+K HK SFFNWWMFSIFFGT T LVY+QD+VGWA+GYGL TLGLA S
Sbjct: 172 ADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I IFL GT YRHK P GSPFT+MA+VIVA++RK P+ +D YEL YA K +
Sbjct: 232 IFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAF 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I ST +LRF N+A++KTGST+ W LC++T+VEETKQML M+P+L FVPS MLAQI T
Sbjct: 292 PIHSTSSLRFLNRASLKTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMT 351
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LF+KQGTTLDR + ++F IPPASL GF T SMLV +V+YDR FV+ R+ T NPRGITLL
Sbjct: 352 LFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLL 411
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEK-GQQVPLTIFILLPQFVLMGTADA 359
QRMGIG+++HI+IM+IAS TERYRL VA +HG+ + +PL+IF LLPQ+VLMG ADA
Sbjct: 412 QRMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADA 471
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
F+E+AK+EFFYDQAPESMKSLGTSY+ T++ VG F+SS LLS+VS TK+ G +GWI NN
Sbjct: 472 FIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNN 530
Query: 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEE 466
LN S LD YY FFA+LN+LNF+ FLVV +FY Y+ +V+ S V +E
Sbjct: 531 LNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKE 577
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Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/462 (49%), Positives = 312/462 (67%), Gaps = 9/462 (1%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GMI+LT++V++ L+P C++ C KAS+LQ+ F+ +LYT+A+G GGTKPNI T
Sbjct: 109 GMILLTMAVTVKSLRPT-CEN---GVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFG 164
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD + +EK K SFFNWWMFS F G L LVYIQ+++GW LGYG+PT+GL +S
Sbjct: 165 ADQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVS 224
Query: 121 IVIFLAGTPFYRHKK-PTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGK 179
+V+F GTPFYRHK T + + +V +A + + P D ELYELD Y GK
Sbjct: 225 LVVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGK 284
Query: 180 YMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQIN 239
+ + T RF +KAA+KT S P C+VT+VE K++L +I I + +PST+ AQ+N
Sbjct: 285 HQVHHTPVFRFLDKAAIKTSSRVP---CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVN 341
Query: 240 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITL 299
TLFVKQGTTLDR IGS+F+IP ASL FVTLSML+ V +YD+ FV R+ T NPRGITL
Sbjct: 342 TLFVKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITL 401
Query: 300 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADA 359
LQR+G+G I I+ + IAS E R+ V K+ I Q VP++IF LLPQ+ L+G D
Sbjct: 402 LQRLGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDV 461
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
F + +EFFYDQ+PE M+SLGT++ + +G+GNFL+SFL++ + T + G K WI NN
Sbjct: 462 FNAIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNN 521
Query: 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSME 461
LN S LDYYY F +++++N F+ A YVYK++ D+ E
Sbjct: 522 LNDSRLDYYYGFLVVISIVNMGLFVWAASKYVYKSD-DDTKE 562
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/463 (44%), Positives = 303/463 (65%), Gaps = 12/463 (2%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLS S+ GLKP C N C S+ Q FF ALY +A+GTGG KP + +
Sbjct: 109 GMTLLTLSASVPGLKPGNC---NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFG 164
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD+ + EK K SFFNW+ FSI G L+ T LV+IQ +VGW G+G+PT+ + I+
Sbjct: 165 ADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIA 224
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
+ F G+ FYR ++P GSP TR+ +VIVA RK +V +P D L+E + KG
Sbjct: 225 VCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSR 284
Query: 181 MIGSTQNLRFFNKAAV-------KTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPST 233
+ T NL+FF+KAAV K G NPW LCSVTQVEE K ++ ++P+ V +T
Sbjct: 285 KLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFAT 344
Query: 234 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKN 293
+ +Q++T+FV QG T+D+ +G +F+IP ASL+ F T+S+L +YD++ + + R++T+N
Sbjct: 345 VYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRN 404
Query: 294 PRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353
RG T LQRMGIGLV+ I M+ A E RL K H ++ +Q+ ++IF +PQ++L
Sbjct: 405 ERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQ-KQIHMSIFWQIPQYLL 463
Query: 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHK 413
+G A+ F + ++EFFYDQAP++M+SL ++ S+TT+ +GN+LS+ L++ V TK++G
Sbjct: 464 IGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKP 523
Query: 414 GWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEV 456
GWI +NLN HLDY++ A L+ LNF+ +L ++K Y YK V
Sbjct: 524 GWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAV 566
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/467 (44%), Positives = 297/467 (63%), Gaps = 13/467 (2%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LT+S S+ GL P C + C A+ Q F ALY +A+GTGG KP + +
Sbjct: 110 GMTLLTISASVPGLTPT-CSG---ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFG 164
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDD + KEK K SFFNW+ F I G ++ ++ LV+IQ +VGW G G+PT+ +AI+
Sbjct: 165 ADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIA 224
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
+V F AG+ FYR +KP GSP TRM +VIVA+ RK V +P D LYE + G
Sbjct: 225 VVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSR 284
Query: 181 MIGSTQNLRFFNKAAVKTGSTN-------PWMLCSVTQVEETKQMLAMIPILVAMFVPST 233
+ T+ L FF+KAAV+T S N W LC+VTQVEE K ++ ++PI V ++
Sbjct: 285 KLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFAS 344
Query: 234 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKN 293
+ +Q+ T+FV QG TLD+ +G +FKIP ASL+ F TLS+L +YD+ V R++T +
Sbjct: 345 VYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGH 404
Query: 294 PRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353
RG T LQR+GIGLVI I MV A E RL+ + H + + + +P+TIF +PQ+ L
Sbjct: 405 ERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQVPQYFL 463
Query: 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHK 413
+G A+ F + ++EFFYDQAP++M+SL ++ S+T + GN+LS+FL++ V+ T+ G
Sbjct: 464 VGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRP 523
Query: 414 GWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSM 460
GWI NLN HLDY++ A L+ LNF+ +L +AK+Y YK ++
Sbjct: 524 GWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHAL 570
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/458 (42%), Positives = 298/458 (65%), Gaps = 14/458 (3%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQD-CRKASTLQLGAFFAALYTLAVGTGGTKPNILTI 59
GM LTLS S+ LKP C I D C A+ Q FF LY +A+GTGG KP + +
Sbjct: 126 GMSALTLSASVPALKPAEC----IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSF 181
Query: 60 AADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAI 119
ADQFDD + +E+ K SFFNW+ FSI G L+ ++ LV+IQ++ GW LG+G+PT+ + +
Sbjct: 182 GADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGL 241
Query: 120 SIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGK 179
+I F GTP YR +KP GSP TR+++V+VA+ RK +V +P D LYE + A G
Sbjct: 242 AIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGS 301
Query: 180 YMIGSTQNLRFFNKAAV------KTGS-TNPWMLCSVTQVEETKQMLAMIPILVAMFVPS 232
I T + ++ +KAAV K+G +N W LC+VTQVEE K ++ M PI + + S
Sbjct: 302 RKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFS 361
Query: 233 TMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTK 292
+ AQ++T+FV+QG ++ IGS F++PPA+L F T S+++ V LYDR+ V + R++T
Sbjct: 362 AVYAQMSTMFVQQGRAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTG 420
Query: 293 NPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352
+G T +QRMGIGL + ++ M A+ E RL +A D G+VE G VP+++ +PQ+
Sbjct: 421 VDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYF 480
Query: 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGH 412
++G A+ F + ++EFFYDQ+P++M+SL ++ ++ T +GN+LSS +L+ V+ T R+G
Sbjct: 481 ILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQ 540
Query: 413 KGWILNNLNVSHLDYYYAFFAILNVLNF-VFFLVVAKF 449
+GWI +NLN HLDY++ A L+++N V+F A++
Sbjct: 541 EGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARY 578
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/456 (42%), Positives = 289/456 (63%), Gaps = 17/456 (3%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLS SL LKP C + C A+T+Q FF LY +A+GTGG KP + +
Sbjct: 137 GMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDD +P+E+ K SFFNW+ FSI G+ + +T LV++Q++VGW LG+ +PT+ + +S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I F GTP YR +KP GSP TR+ +V+VA RK + LP D LYE + G
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316
Query: 181 MIGSTQNLRFFNKAAV------KTGS-TNPWMLCSVTQVEETKQMLAMIPILVAMFVPST 233
I T +F +KAAV K+G+ +NPW LC+VTQVEE K ++ M PI + V S
Sbjct: 317 KIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSV 376
Query: 234 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKN 293
+ +QI+TLFV+QG +++R I SF+IPPAS F TL +L+ + +YDR+ V RR+T
Sbjct: 377 LYSQISTLFVQQGRSMNRII-RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGI 435
Query: 294 PRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353
P+G+T LQRMGIGL + ++ + A+ E RL +A+D V ++IF +PQ++L
Sbjct: 436 PKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYIL 487
Query: 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHK 413
MG A+ F + ++EFFYD++P++M+S+ ++ ++ VG++LSS +L+ V+ T G
Sbjct: 488 MGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKD 547
Query: 414 GWILNNLNVSHLDYYYAFFAILNVLNF-VFFLVVAK 448
GW+ ++LN HLDY++ L ++N V+ L+ K
Sbjct: 548 GWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVK 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/451 (41%), Positives = 279/451 (61%), Gaps = 18/451 (3%)
Query: 30 ASTLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFG 89
A ++ FF ALY +AVG GG KP ++T AADQF + +EKA K SFFN+W +I
Sbjct: 109 ARRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLA 168
Query: 90 TLLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIV 149
+ + AL++IQ+ V W+LG+ + + I+IVIFL G P YR + P GSPFTR+A+V+V
Sbjct: 169 SSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMV 228
Query: 150 ATIRKWNVPLPTDPRELY--------ELDLEAYAQKGKYMIGSTQNLRFFNKAAV----- 196
A ++KW + + R Y E LE+ Y++ T RF +KA +
Sbjct: 229 AALKKWRL---SSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEID 285
Query: 197 KTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSS 256
+ NPW LC+V QVEE K +L +IPI +++ + L Q+NT F+KQG+ +DR IG+
Sbjct: 286 HNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNH 345
Query: 257 FKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI 316
F IPPA+ V +++L+ + LYDR FV + R+ T + GIT LQR+G+GL + MVI
Sbjct: 346 FTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVI 405
Query: 317 ASFTERYRLSVAKDHGIVEKGQQ-VPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPE 375
E RL VA+DHG+++ ++ VP++ LLPQ++L+G D F V E FYDQ PE
Sbjct: 406 CGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPE 465
Query: 376 SMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAIL 435
+M+S+G + ++ +GVG+F+S+ ++STV +K HG + W++NNLN +HLDYYY A L
Sbjct: 466 TMRSIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEE-WLVNNLNRAHLDYYYWIIASL 524
Query: 436 NVLNFVFFLVVAKFYVYKTEVSDSMEVLTEE 466
N ++ F+L +A ++YK +V +E
Sbjct: 525 NAVSLCFYLFIANHFLYKKLQDKDDDVESER 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 287/474 (60%), Gaps = 20/474 (4%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
G+I+LTLS + GLK C + + RKA + AFF A+Y +++GTGG KP++ +
Sbjct: 122 GLILLTLSWFIPGLKA--CHEDMCVEPRKAHEI---AFFIAIYLISIGTGGHKPSLESFG 176
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQF+D P+E+ K S+FNWW + G L T +VYI+D +GW + + T+ +A S
Sbjct: 177 ADQFEDGHPEERKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATS 236
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
IF G PFYR++ P+GSP T M +V VA I K N+P P+D L+EL E Y KG+
Sbjct: 237 FFIFRIGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYT-KGR- 294
Query: 181 MIGSTQNLRFFNKAAV--------KTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPS 232
++ S++NL+F +KAAV K +PW L +VT+VEE K ++ MIPI
Sbjct: 295 LLSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFG 354
Query: 233 TMLAQINTLFVKQGTTLDRAI-GSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWT 291
Q +TLF+KQ +DR I G+SF +PPASL + LS+++ V +Y++ V + RR T
Sbjct: 355 VCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRAT 414
Query: 292 KNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351
N RGI++LQR+G+G+V + M+IA+ E+ RL AK+H + + + L+ L PQF
Sbjct: 415 GNERGISILQRIGVGMVFSLFAMIIAALIEKKRLDYAKEHHM---NKTMTLSAIWLAPQF 471
Query: 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHG 411
+++G ADAF V E+FYDQ P+SM+SLG ++ ++ LG +F+++ L++ +
Sbjct: 472 LVLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEIS 531
Query: 412 HKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTE 465
KGW +LN S LD +Y A L N F++VA Y YKT V S+ V+ +
Sbjct: 532 GKGWFGKDLNSSRLDRFYWMLAALTAANICCFVIVAMRYTYKT-VQPSLAVVAD 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/449 (41%), Positives = 269/449 (59%), Gaps = 41/449 (9%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM+ LTLS S+ GLKP C C A+ +Q F+ LY +A+GTGG KP + +
Sbjct: 127 GMVALTLSASVPGLKPAECIG---SLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFG 183
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD +P E+ K SFFNW+ F+I G + +T LV+IQ++ GW LG+ +PT+ + ++
Sbjct: 184 ADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLA 243
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
+ F GTP YR +KP GSP T + +V+VA RK N+ +P D + E D
Sbjct: 244 TMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDSTD--EGD---------- 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
+TNPW LC+VTQVEE K +L ++PI + + S + +QI T
Sbjct: 292 ------------------ANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYT 333
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFV+QG + R IG F+IPPA+L F T S+L+ V +YDR V + RR+T +G T L
Sbjct: 334 LFVQQGRCMKRTIGL-FEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTEL 392
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAF 360
QRMGIGL + ++ + A+ E RL +A+D +VE G VPL IF +PQ+ LMGTA F
Sbjct: 393 QRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVF 452
Query: 361 LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWI-LNN 419
V +IEFFY+Q+P+SM+SL +++++ T +GN+LSS +++ V+ G WI +N
Sbjct: 453 FFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVA---YLSGKDCWIPSDN 509
Query: 420 LNVSHLDYYYAFFAILNVLN---FVFFLV 445
+N HLDY++ L +N FVFF V
Sbjct: 510 INNGHLDYFFWLLVSLGSVNIPVFVFFSV 538
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | ||||||
| 224107477 | 589 | predicted protein [Populus trichocarpa] | 0.985 | 0.808 | 0.805 | 0.0 | |
| 225433219 | 592 | PREDICTED: peptide transporter PTR3-A [V | 0.991 | 0.809 | 0.787 | 0.0 | |
| 147806162 | 586 | hypothetical protein VITISV_015576 [Viti | 0.956 | 0.788 | 0.801 | 0.0 | |
| 255575829 | 564 | oligopeptide transporter, putative [Rici | 0.991 | 0.849 | 0.791 | 0.0 | |
| 357441053 | 593 | Peptide transporter PTR3-A [Medicago tru | 0.966 | 0.787 | 0.768 | 0.0 | |
| 224099963 | 547 | predicted protein [Populus trichocarpa] | 0.898 | 0.793 | 0.820 | 0.0 | |
| 356501795 | 635 | PREDICTED: peptide transporter PTR3-A-li | 0.966 | 0.735 | 0.746 | 0.0 | |
| 356533306 | 590 | PREDICTED: peptide transporter PTR3-A-li | 0.966 | 0.791 | 0.746 | 0.0 | |
| 356576503 | 594 | PREDICTED: peptide transporter PTR3-A-li | 0.966 | 0.786 | 0.742 | 0.0 | |
| 449458852 | 592 | PREDICTED: peptide transporter PTR3-A-li | 0.985 | 0.804 | 0.704 | 0.0 |
| >gi|224107477|ref|XP_002314492.1| predicted protein [Populus trichocarpa] gi|222863532|gb|EEF00663.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/477 (80%), Positives = 423/477 (88%), Gaps = 1/477 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLSVSL L+PP CK+ N+++C++ASTLQL FF ALYTLA+GTGGTKPNI TI
Sbjct: 110 GMSLLTLSVSLPALRPPICKNANVENCKEASTLQLAVFFGALYTLAIGTGGTKPNISTIG 169
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF PKEKA+K SFFNWWMFSIFFGTL NT LVYIQD+VGWALGYGLPTLGL IS
Sbjct: 170 ADQFDDFHPKEKAYKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWALGYGLPTLGLVIS 229
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
+ IFLAGTPFYRH++PTGSPFTRMAKVIVA +RKW V +P DP+EL+ELDLE YA+ GK+
Sbjct: 230 VAIFLAGTPFYRHRQPTGSPFTRMAKVIVAALRKWKVSVPNDPKELHELDLEEYAKAGKF 289
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I ST LRF NKAAVKTGST+PWMLCSVTQVEETKQML MIPIL++ FVPSTM+AQINT
Sbjct: 290 RIDSTPTLRFLNKAAVKTGSTDPWMLCSVTQVEETKQMLRMIPILISTFVPSTMIAQINT 349
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFVKQGTTLDR IG +F++PPASL GFVTLSMLVCVVLYDR+FVRI RRWTKNPRGITLL
Sbjct: 350 LFVKQGTTLDRQIG-NFEVPPASLAGFVTLSMLVCVVLYDRFFVRIVRRWTKNPRGITLL 408
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAF 360
QRMGIGLV HIIIM+ AS ER+RLSVA+ HG+VEKG QVPLTIFILLPQFVLMG ADAF
Sbjct: 409 QRMGIGLVFHIIIMITASLIERHRLSVARQHGLVEKGGQVPLTIFILLPQFVLMGAADAF 468
Query: 361 LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420
LEVAK+EFFYDQAPESMKSLGTSYS T+LGVGNF+SSFLLSTVS TK+HGH+GWILNNL
Sbjct: 469 LEVAKLEFFYDQAPESMKSLGTSYSTTSLGVGNFISSFLLSTVSHITKKHGHRGWILNNL 528
Query: 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELKVMRLRASAQ 477
N SHLDYYYAFFAILN LNF+FFL V +FYVYK EVSDSMEVL EELK MRLR Q
Sbjct: 529 NASHLDYYYAFFAILNFLNFIFFLGVIRFYVYKAEVSDSMEVLAEELKAMRLREPNQ 585
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433219|ref|XP_002285402.1| PREDICTED: peptide transporter PTR3-A [Vitis vinifera] gi|296083701|emb|CBI23690.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/480 (78%), Positives = 417/480 (86%), Gaps = 1/480 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LT++VS+ GLKPP C ++ DC+KASTLQL FF ALYTLAVGTGGTKPNI TI
Sbjct: 112 GMSLLTVAVSVPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF+PKEK HK SFFNWWMFSIFFGTL NT LVYIQD+VGW LGYGLPT GLAIS
Sbjct: 172 ADQFDDFDPKEKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAIS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
IVIFLAGTPFYRH+ P+GSPFTRMAKVI+A +RKW P+PTDP+ELYELDLE YA+KGK+
Sbjct: 232 IVIFLAGTPFYRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYAKKGKF 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I ST LRF NKA VKTGS +PWMLCSVTQVEETKQML MIPIL+A FVPSTM+AQINT
Sbjct: 292 RIDSTPTLRFLNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINT 351
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFVKQGTTLDR IG SF IPPASLTGFVTLSMLV VVLYDR+FV ITRR TKNPRGITLL
Sbjct: 352 LFVKQGTTLDRGIG-SFNIPPASLTGFVTLSMLVSVVLYDRFFVTITRRLTKNPRGITLL 410
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAF 360
QRMGIGLV HI IM++AS ER RLSVAKDHG+VE G QVPL+I ILLPQF+LMGTADAF
Sbjct: 411 QRMGIGLVFHIFIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAF 470
Query: 361 LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420
LEVAKIEFFYDQAPESMKSLGTSYSMT+LG+GNFLSSFLL+TVS TK+HGH GWILNNL
Sbjct: 471 LEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNL 530
Query: 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELKVMRLRASAQEAT 480
N SHLDYYYAFFAILN LNF+FF+VV K+YVYK EV+DSMEVL +L+ + + QE +
Sbjct: 531 NASHLDYYYAFFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVLEGQLRGLTPAVTNQEES 590
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147806162|emb|CAN63331.1| hypothetical protein VITISV_015576 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/463 (80%), Positives = 408/463 (88%), Gaps = 1/463 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LT++VS+ GLKPP C ++ DC+KASTLQL FF ALYTLAVGTGGTKPNI TI
Sbjct: 112 GMSLLTVAVSVPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF+PKEK HK SFFNWWMFSIFFGTL NT LVYIQD+VGW LGYGLPT GLAIS
Sbjct: 172 ADQFDDFDPKEKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAIS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I+IFLAGTPFYRH+ P+GSPFTRMAKVI+A +RKW P+PTDP+ELYELDLE Y +KGK+
Sbjct: 232 IMIFLAGTPFYRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYGKKGKF 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I ST LRF NKA VKTGS +PWMLCSVTQVEETKQML MIPIL+A FVPSTM+AQINT
Sbjct: 292 RIDSTPTLRFLNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINT 351
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFVKQGTTLDR IG SF IPPASLTGFVT+SMLV VVLYDR+FV I RR TKNPRGITLL
Sbjct: 352 LFVKQGTTLDRGIG-SFNIPPASLTGFVTISMLVSVVLYDRFFVTIMRRLTKNPRGITLL 410
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAF 360
QRMGIGLV HI+IM++AS ER RLSVAKDHG+VE G QVPL+I ILLPQF+LMGTADAF
Sbjct: 411 QRMGIGLVFHIVIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAF 470
Query: 361 LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420
LEVAKIEFFYDQAPESMKSLGTSYSMT+LG+GNFLSSFLL+TVS TK+HGH GWILNNL
Sbjct: 471 LEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNL 530
Query: 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVL 463
N SHLDYYYAFFAILN LNF+FF+VV K+YVYK EV+DSMEVL
Sbjct: 531 NASHLDYYYAFFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVL 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575829|ref|XP_002528812.1| oligopeptide transporter, putative [Ricinus communis] gi|223531724|gb|EEF33546.1| oligopeptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/480 (79%), Positives = 419/480 (87%), Gaps = 1/480 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM VLTLSVSL L+PPPCK+ N+ DCRKAS LQL FF ALYTLA+GTGGTKPNI TI
Sbjct: 81 GMSVLTLSVSLPALRPPPCKEANVDDCRKASPLQLAVFFGALYTLAIGTGGTKPNISTIG 140
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF+PKEK HK SFFNWWMFSIFFGTL NT LVYIQD+VGWALGYGLPTLGL IS
Sbjct: 141 ADQFDDFDPKEKDHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWALGYGLPTLGLLIS 200
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I IFLAGTP+YRHK P GSPFTRMA IVA IRK +P+P DP+ELYELDLE YA+ GK+
Sbjct: 201 ISIFLAGTPYYRHKIPAGSPFTRMAMAIVAAIRKIKMPIPNDPKELYELDLEEYARNGKF 260
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I ST LRF NKAAV+TGST+PWMLCSVTQVEETKQML MIP+L+A FVPSTM+AQI+T
Sbjct: 261 RIDSTPGLRFLNKAAVRTGSTDPWMLCSVTQVEETKQMLRMIPVLIATFVPSTMIAQIST 320
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFVKQGTTLDR IG SFKIPPASL+GFVT++ML+ VVLYDR+FVRITR+ T NPRG+TLL
Sbjct: 321 LFVKQGTTLDRNIG-SFKIPPASLSGFVTIAMLISVVLYDRFFVRITRKLTNNPRGVTLL 379
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAF 360
QRMGIG+V HIIIM+IAS ERYRLSVAK+HG+VE G QVPLTIFILLPQFVLMG ADAF
Sbjct: 380 QRMGIGIVFHIIIMIIASLIERYRLSVAKEHGLVENGGQVPLTIFILLPQFVLMGMADAF 439
Query: 361 LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420
LEVAK+EFFYDQAPESMKSLGTSYS T+LG+GNFLSSFLLSTVS T ++GH+GWILNNL
Sbjct: 440 LEVAKLEFFYDQAPESMKSLGTSYSTTSLGIGNFLSSFLLSTVSRLTSKNGHQGWILNNL 499
Query: 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELKVMRLRASAQEAT 480
N SHLDYYYAFFAILN NF+FFLVV KFYVYK E SDSMEVL E+LK MRL+A QE +
Sbjct: 500 NASHLDYYYAFFAILNFFNFLFFLVVIKFYVYKAEASDSMEVLAEQLKGMRLQAPNQEVS 559
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441053|ref|XP_003590804.1| Peptide transporter PTR3-A [Medicago truncatula] gi|355479852|gb|AES61055.1| Peptide transporter PTR3-A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/470 (76%), Positives = 405/470 (86%), Gaps = 3/470 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTL+VSL LKPP C ++++ C+K STLQL F+ ALYTLA+GTGGTKPNI TI
Sbjct: 113 GMSLLTLAVSLPTLKPPECHELDVTKCKKLSTLQLAVFYGALYTLAIGTGGTKPNISTIG 172
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF PKEK+HK SFFNWWMFSIFFGTL NT LVYIQD+VGW LGY LPTLGLAIS
Sbjct: 173 ADQFDDFHPKEKSHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYALPTLGLAIS 232
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGK- 179
I+IFL GTPFYRHK P GS FTRMA+VIVA++RKW VP+P D ++LYELD+E YA+KG
Sbjct: 233 IMIFLGGTPFYRHKLPAGSTFTRMARVIVASLRKWKVPVPDDTKKLYELDMEEYAKKGSN 292
Query: 180 -YMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQI 238
Y I ST LRF +KA+VKTGST+PWMLC+VT VEETKQML MIPILVA FVPSTM+AQ+
Sbjct: 293 TYRIDSTPTLRFLDKASVKTGSTSPWMLCTVTHVEETKQMLRMIPILVATFVPSTMMAQV 352
Query: 239 NTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGIT 298
NTLFVKQGTTLDR IGS FKIPPASL FVTLS+LVCVVLYDR+FVRI +R TKNPRGIT
Sbjct: 353 NTLFVKQGTTLDRHIGS-FKIPPASLAAFVTLSLLVCVVLYDRFFVRIMQRLTKNPRGIT 411
Query: 299 LLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTAD 358
LLQRMGIGLV+H IIMV+AS TE YRL VAK+HG+VE G QVPL+IFILLPQF+LMGTAD
Sbjct: 412 LLQRMGIGLVLHTIIMVVASVTENYRLRVAKEHGLVESGGQVPLSIFILLPQFILMGTAD 471
Query: 359 AFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILN 418
AFLEVAKIEFFYDQAPESMKS+GTSYS TTLGVGNF+SSFLLSTVS T+ HGHKGWILN
Sbjct: 472 AFLEVAKIEFFYDQAPESMKSIGTSYSSTTLGVGNFISSFLLSTVSHITQEHGHKGWILN 531
Query: 419 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELK 468
NLN SHLDYYYAFFA+LN LN FF V +FYVY+ EVSDS+++L ELK
Sbjct: 532 NLNDSHLDYYYAFFAVLNFLNLAFFAFVTRFYVYRAEVSDSIDMLANELK 581
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099963|ref|XP_002311689.1| predicted protein [Populus trichocarpa] gi|222851509|gb|EEE89056.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/435 (82%), Positives = 386/435 (88%), Gaps = 1/435 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLSVSL L+PPPCKD N +CRKAST+QL FF ALYTLAVGTGGTKPNI TI
Sbjct: 114 GMSLLTLSVSLPALRPPPCKDANSDNCRKASTMQLAVFFGALYTLAVGTGGTKPNISTIG 173
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF PKEKAHK SFFNWWMFSIFFGTL NT LVYIQD+VGWALGYGLPTLGL IS
Sbjct: 174 ADQFDDFHPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWALGYGLPTLGLLIS 233
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
+ IFLAGTP+YRH+ PTGSPFTRMAKVIVA +RK V +P+DP+ELYELDLE YA+ GK+
Sbjct: 234 VAIFLAGTPYYRHRLPTGSPFTRMAKVIVAALRKSKVSVPSDPKELYELDLEEYAKGGKF 293
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I ST LRF KAAVKTG T+PWMLCSVTQVEETKQML MIPIL+A FVPSTM+AQINT
Sbjct: 294 RIDSTPTLRFLTKAAVKTGRTDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINT 353
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFVKQGTTLDR IG SFKIPPASL GFVTLSMLVCVVLYDR+FV I RRWTKNPRGITLL
Sbjct: 354 LFVKQGTTLDRNIG-SFKIPPASLVGFVTLSMLVCVVLYDRFFVSIARRWTKNPRGITLL 412
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAF 360
QRMGIGLV HIIIM+ AS ER+RLSVA++HG+VE G Q+PLTIFILLPQFVLMG ADAF
Sbjct: 413 QRMGIGLVFHIIIMIAASLIERHRLSVAREHGLVENGGQIPLTIFILLPQFVLMGVADAF 472
Query: 361 LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420
LEVAK+EFFYDQAPESMKSLGTSYS T+LG+GNFLSSFLLSTVSD TK+HGH+GWILNNL
Sbjct: 473 LEVAKLEFFYDQAPESMKSLGTSYSTTSLGIGNFLSSFLLSTVSDITKKHGHRGWILNNL 532
Query: 421 NVSHLDYYYAFFAIL 435
N SHLDYYYAFFAIL
Sbjct: 533 NASHLDYYYAFFAIL 547
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501795|ref|XP_003519709.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/469 (74%), Positives = 395/469 (84%), Gaps = 2/469 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLSVSL LKPP C ++++ C KAS L L F+ ALYTLA+GTGGTKPNI TI
Sbjct: 112 GMSLLTLSVSLPSLKPPECHELDVTKCEKASILHLAVFYGALYTLALGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF+ KEK K SFFNWWMFSIF GTL N+ LVYIQD+VGW LGY LPTLGLAIS
Sbjct: 172 ADQFDDFDSKEKKLKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAIS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I+IFLAGTPFYRHK PTGSPFT+MAKVIVA IRKW V +P+D +ELYELDLE YA+KG+
Sbjct: 232 IIIFLAGTPFYRHKLPTGSPFTKMAKVIVAAIRKWKVHIPSDTKELYELDLEEYAKKGRV 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNP-WMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQIN 239
I ST LR NKA V T ST WML VT VEETKQML MIPIL A +PS M+AQI
Sbjct: 292 RIDSTPTLRLLNKACVNTDSTTSGWMLSPVTHVEETKQMLRMIPILAATLIPSAMVAQIG 351
Query: 240 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITL 299
TLFVKQG TLDR IGS F IPPASL FVTLSMLVCVVLYDR+FV+I +R+TKNPRGITL
Sbjct: 352 TLFVKQGITLDRGIGS-FNIPPASLATFVTLSMLVCVVLYDRFFVKIMQRFTKNPRGITL 410
Query: 300 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADA 359
LQR+GIGL+IHI+IMV+AS TERYRL VAK+HG+VE G QVPL+IFILLPQ+VLMG ADA
Sbjct: 411 LQRIGIGLIIHIVIMVVASLTERYRLRVAKEHGLVENGGQVPLSIFILLPQYVLMGAADA 470
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
F+EVAKIEFFYDQAPESMKSLGTSYSMTTLG+GNFLS+FLL+T+S TK+HGH+GW+LNN
Sbjct: 471 FVEVAKIEFFYDQAPESMKSLGTSYSMTTLGIGNFLSTFLLTTISHVTKKHGHRGWVLNN 530
Query: 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELK 468
LN SHLDYYYA AILN LNF+FF+VV KFYVY+ E+SDS++VL EELK
Sbjct: 531 LNASHLDYYYALLAILNFLNFIFFMVVTKFYVYRAEISDSIKVLEEELK 579
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533306|ref|XP_003535206.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/469 (74%), Positives = 398/469 (84%), Gaps = 2/469 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLSVSL LKPP C ++++ C KASTL L F+ ALYTLA+GTGGTKPNI TI
Sbjct: 112 GMSLLTLSVSLPSLKPPECHELDVTKCEKASTLHLAVFYGALYTLALGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF+ KEK K SFFNWWMFSIF GTL N+ LVYIQD+VGW LGY LPTLGLAIS
Sbjct: 172 ADQFDDFDSKEKKLKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAIS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I+IFLAGTPFYRHK PTGSPFT+MAKVIVA IRKW V +P+D +ELYELDLE YA++G+
Sbjct: 232 IIIFLAGTPFYRHKLPTGSPFTKMAKVIVAAIRKWKVHIPSDTKELYELDLEEYAKRGRV 291
Query: 181 MIGSTQNLRFFNKAAVKT-GSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQIN 239
I ST LRF NKA V T ST+ W L VT VEETKQML MIPIL A +PS M+AQI
Sbjct: 292 RIDSTPTLRFLNKACVNTDSSTSGWKLSPVTHVEETKQMLRMIPILAATLIPSAMVAQIG 351
Query: 240 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITL 299
TLFVKQG TLDR IGS F IPPASL FVTLSMLVCVVLYDR+FV+I +R+TKNPRGITL
Sbjct: 352 TLFVKQGITLDRGIGS-FNIPPASLATFVTLSMLVCVVLYDRFFVKIMQRFTKNPRGITL 410
Query: 300 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADA 359
LQR+GIGL+IHI+IMVIAS TERYRL VAK+HG++E G QVPL+IFILLPQ+VLMG ADA
Sbjct: 411 LQRIGIGLIIHIVIMVIASLTERYRLRVAKEHGLLENGGQVPLSIFILLPQYVLMGAADA 470
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
F+EVAKIEFFYDQAPESMKSLGTSYSMTTLG+GNFLS+FLL+T+S TK+HGH+GW+LNN
Sbjct: 471 FVEVAKIEFFYDQAPESMKSLGTSYSMTTLGIGNFLSTFLLTTISHVTKKHGHRGWVLNN 530
Query: 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELK 468
LN SHLDYYYA AILN++NFVFF+VV KFYVY+ E+SDS++VL EELK
Sbjct: 531 LNASHLDYYYALLAILNLVNFVFFMVVTKFYVYRAEISDSIKVLEEELK 579
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576503|ref|XP_003556370.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/469 (74%), Positives = 399/469 (85%), Gaps = 2/469 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTL+VSL LKPP C ++ C KASTLQL F+ ALYTLAVGTGGTKPNI TI
Sbjct: 115 GMSLLTLAVSLPSLKPPQCFVKDVTKCAKASTLQLAVFYGALYTLAVGTGGTKPNISTIG 174
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF PKEK HK SFFNWWMFSIFFGTL N+ LVYIQD+VGW LGY LPTLGL +S
Sbjct: 175 ADQFDDFHPKEKLHKLSFFNWWMFSIFFGTLFANSVLVYIQDNVGWTLGYALPTLGLLVS 234
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I+IF+AGTPFYRHK P GS FTRMA+V+VA +RK VP+P+D +ELYELD E YA+KG Y
Sbjct: 235 IMIFVAGTPFYRHKVPAGSTFTRMARVVVAALRKSKVPVPSDSKELYELDKEEYAKKGSY 294
Query: 181 MIGSTQNLRFFNKAAVKTGS-TNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQIN 239
I T L+F +KA VKT S T+ W LC+VTQVEETKQM+ MIPILVA FVPSTM+AQIN
Sbjct: 295 RIDHTPTLKFLDKACVKTDSNTSAWTLCTVTQVEETKQMIRMIPILVATFVPSTMMAQIN 354
Query: 240 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITL 299
TLFVKQGTTLDR +GS FKIPPASL FVT+S+LVC+VLYDR+FV+I +R+TKNPRGITL
Sbjct: 355 TLFVKQGTTLDRHLGS-FKIPPASLAAFVTVSLLVCIVLYDRFFVKIMQRFTKNPRGITL 413
Query: 300 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADA 359
LQRMGIGLVIH +IM+IAS TE YRL VA++HG+VE G QVPL+IFILLPQF+LMGTADA
Sbjct: 414 LQRMGIGLVIHTLIMIIASGTESYRLKVAREHGVVESGGQVPLSIFILLPQFILMGTADA 473
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
FLEVAKIEFFYDQ+PE MKS+GTSYS TTLG+GNF+SSFLLSTVS+ TK++GHKGWILNN
Sbjct: 474 FLEVAKIEFFYDQSPEHMKSIGTSYSTTTLGLGNFISSFLLSTVSNVTKKNGHKGWILNN 533
Query: 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELK 468
LN SHLDYYYAFFAILN LN +FF V +FYVY+ EVSDS++ L +ELK
Sbjct: 534 LNESHLDYYYAFFAILNFLNLIFFAYVTRFYVYRVEVSDSIDKLAKELK 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458852|ref|XP_004147160.1| PREDICTED: peptide transporter PTR3-A-like [Cucumis sativus] gi|449498602|ref|XP_004160581.1| PREDICTED: peptide transporter PTR3-A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/480 (70%), Positives = 405/480 (84%), Gaps = 4/480 (0%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LT++VSL L+PPPC D C KAS+LQL +F ALY LA+GTGGTKPNI TI
Sbjct: 113 GMSLLTMAVSLPTLRPPPCADPTSGHCEKASSLQLAVYFGALYILAIGTGGTKPNISTIG 172
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDDF PKEK K SFFNWWMFSIFFGTL N LVYIQD++GW LGYGLPTLGLAIS
Sbjct: 173 ADQFDDFHPKEKKQKLSFFNWWMFSIFFGTLFANIILVYIQDNIGWTLGYGLPTLGLAIS 232
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I IF+AG PFYRHK P GSPF+RM KV+VA IRK +PLP D +ELYELDLE Y +K K+
Sbjct: 233 IGIFVAGIPFYRHKVPAGSPFSRMGKVLVAAIRKRKLPLPRDVKELYELDLEEYTKKRKF 292
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
+ +T +L F NKA++KTGST+PW LC+VT+VEETKQM+ MIPIL A FVPS MLAQ+NT
Sbjct: 293 RMEATPSLSFLNKASIKTGSTHPWRLCTVTEVEETKQMIRMIPILFATFVPSIMLAQVNT 352
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LF+KQGTTL+R IG +F+IPPASL+GFVT+S+L+ + LYDR FV+I R++TKNPRGITLL
Sbjct: 353 LFIKQGTTLNRKIG-NFEIPPASLSGFVTVSLLISIGLYDRVFVKIMRKFTKNPRGITLL 411
Query: 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAF 360
QRMGIG+V+H++IMV+ S ER RL+VAK+HG+V+ G QVPL+IFILLPQF+LMGTADAF
Sbjct: 412 QRMGIGIVLHMLIMVVCSLVERRRLAVAKEHGVVQSGAQVPLSIFILLPQFILMGTADAF 471
Query: 361 LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420
+EV+KIEFFYDQAPESMKSLGTSYS T +G GNFLSSFLLSTV++ T+R+G KGWILNNL
Sbjct: 472 MEVSKIEFFYDQAPESMKSLGTSYSTTAIGTGNFLSSFLLSTVANLTRRNGRKGWILNNL 531
Query: 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSMEVLTEELKVMRLRASAQEAT 480
N SHLDYYY FFAILN LNF+FFLVV+++YVYK EVSDS+ +LTEELK +A ++E++
Sbjct: 532 NASHLDYYYGFFAILNFLNFIFFLVVSRYYVYKAEVSDSIRLLTEELKE---KAPSKESS 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | ||||||
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.966 | 0.802 | 0.656 | 2.7e-164 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.962 | 0.793 | 0.605 | 2.6e-150 | |
| TAIR|locus:2061843 | 583 | AT2G40460 [Arabidopsis thalian | 0.937 | 0.777 | 0.482 | 2.3e-110 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.933 | 0.791 | 0.419 | 2.3e-94 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.886 | 0.731 | 0.419 | 1.5e-90 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.869 | 0.711 | 0.422 | 8.3e-90 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.923 | 0.782 | 0.422 | 8.3e-90 | |
| TAIR|locus:1006230253 | 555 | AT3G54450 [Arabidopsis thalian | 0.859 | 0.747 | 0.405 | 3.4e-84 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.467 | 0.414 | 0.437 | 4e-83 | |
| TAIR|locus:2084500 | 602 | AT3G53960 [Arabidopsis thalian | 0.937 | 0.752 | 0.393 | 2.8e-82 |
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1599 (567.9 bits), Expect = 2.7e-164, P = 2.7e-164
Identities = 308/469 (65%), Positives = 363/469 (77%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM+VLTLSV++ G+KPP C N+++C KAS LQL FF ALYTLA+GTGGTKPNI TI
Sbjct: 112 GMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD F+PKEK K SFFNWWMFSIFFGTL NT LVY+QD+VGW LGYGLPTLGLAIS
Sbjct: 172 ADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAIS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I IFL GTPFYRHK PTGSPFT+MA+VIVA+ RK N P+ D +EL Y +KG +
Sbjct: 232 ITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAF 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I T +LRF ++A++KTG+ + W LC+ T+VEETKQML M+P+L FVPS MLAQINT
Sbjct: 292 PIHPTPSLRFLDRASLKTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINT 351
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LFVKQGTTLDR + SF IPPASL+GFVTLSML+ +VLYDR FV+ITR++T NPRGITLL
Sbjct: 352 LFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLL 411
Query: 301 QRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEK-GQQVPLTIFILLPQFVLMGTADA 359
QR AS TERYRL VA DHG++ + G ++PLTIF LLPQFVLMG AD+
Sbjct: 412 QRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADS 471
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
FLEVAK+EFFYDQAPESMKSLGTSYS T+L +GNF+SSFLLSTVS+ TK+ G +GWILNN
Sbjct: 472 FLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNN 530
Query: 420 LNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKTEVSDSMEVLTEELK 468
LN S LDYYY FFA+ KFYVY+ EV+DS++V E+K
Sbjct: 531 LNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579
|
|
| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 283/467 (60%), Positives = 342/467 (73%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLSVSL GLKPP C N+++C KAS +QL FF ALYTLA+GTGGTKPNI TI
Sbjct: 112 GMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIG 171
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD+F+PK+K HK SFFNWWMFSIFFGT T LVY+QD+VGWA+GYGL TLGLA S
Sbjct: 172 ADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFS 231
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I IFL GT YRHK P GSPFT+MA+VIVA++RK P+ +D YEL YA K +
Sbjct: 232 IFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAF 291
Query: 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINT 240
I ST +LRF N+A++KTGST+ W LC++T+VEETKQML M+P+L FVPS MLAQI T
Sbjct: 292 PIHSTSSLRFLNRASLKTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMT 351
Query: 241 LFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLL 300
LF+KQGTTLDR + ++F IPPASL GF T SMLV +V+YDR FV+ R+ T NPRGITLL
Sbjct: 352 LFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLL 411
Query: 301 QRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEK-GQQVPLTIFILLPQFVLMGTADA 359
QR AS TERYRL VA +HG+ + +PL+IF LLPQ+VLMG ADA
Sbjct: 412 QRMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADA 471
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
F+E+AK+EFFYDQAPESMKSLGTSY+ T++ VG F+SS LLS+VS TK+ G +GWI NN
Sbjct: 472 FIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNN 530
Query: 420 LNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKTEVSDSMEVLTEE 466
LN S LD YY FFA+ +FY Y+ +V+ S V +E
Sbjct: 531 LNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKE 577
|
|
| TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
Identities = 223/462 (48%), Positives = 297/462 (64%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GMI+LT++V++ L+P C++ + C KAS+LQ+ F+ +LYT+A+G GGTKPNI T
Sbjct: 109 GMILLTMAVTVKSLRPT-CEN-GV--CNKASSLQVTFFYISLYTIAIGAGGTKPNISTFG 164
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD + +EK K SFFNWWMFS F G L LVYIQ+++GW LGYG+PT+GL +S
Sbjct: 165 ADQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVS 224
Query: 121 IVIFLAGTPFYRHKK-PTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGK 179
+V+F GTPFYRHK T + + +V +A + + P D ELYELD Y GK
Sbjct: 225 LVVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGK 284
Query: 180 YMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQIN 239
+ + T RF +KAA+KT S P C+VT+VE K++L +I I + +PST+ AQ+N
Sbjct: 285 HQVHHTPVFRFLDKAAIKTSSRVP---CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVN 341
Query: 240 TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITL 299
TLFVKQGTTLDR IGS+F+IP ASL FVTLSML+ V +YD+ FV R+ T NPRGITL
Sbjct: 342 TLFVKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITL 401
Query: 300 LQRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADA 359
LQR AS E R+ V K+ I Q VP++IF LLPQ+ L+G D
Sbjct: 402 LQRLGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDV 461
Query: 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419
F + +EFFYDQ+PE M+SLGT++ + +G+GNFL+SFL++ + T + G K WI NN
Sbjct: 462 FNAIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNN 521
Query: 420 LNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKTEVSDSME 461
LN S LDYYY F + A YVYK++ D+ E
Sbjct: 522 LNDSRLDYYYGFLVVISIVNMGLFVWAASKYVYKSD-DDTKE 562
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 194/463 (41%), Positives = 284/463 (61%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLS S+ GLKP C N C S+ Q FF ALY +A+GTGG KP + +
Sbjct: 109 GMTLLTLSASVPGLKPGNC---NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFG 164
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD+ + EK K SFFNW+ FSI G L+ T LV+IQ +VGW G+G+PT+ + I+
Sbjct: 165 ADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIA 224
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
+ F G+ FYR ++P GSP TR+ +VIVA RK +V +P D L+E + KG
Sbjct: 225 VCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSR 284
Query: 181 MIGSTQNLRFFNKAAV-------KTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPST 233
+ T NL+FF+KAAV K G NPW LCSVTQVEE K ++ ++P+ V +T
Sbjct: 285 KLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFAT 344
Query: 234 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKN 293
+ +Q++T+FV QG T+D+ +G +F+IP ASL+ F T+S+L +YD++ + + R++T+N
Sbjct: 345 VYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRN 404
Query: 294 PRGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353
RG T LQR A E RL K H ++ +Q+ ++IF +PQ++L
Sbjct: 405 ERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQ-KQIHMSIFWQIPQYLL 463
Query: 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHK 413
+G A+ F + ++EFFYDQAP++M+SL ++ S+TT+ +GN+LS+ L++ V TK++G
Sbjct: 464 IGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKP 523
Query: 414 GWILNNLNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKTEV 456
GWI +NLN HLDY++ A +K Y YK V
Sbjct: 524 GWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAV 566
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 185/441 (41%), Positives = 278/441 (63%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQD-CRKASTLQLGAFFAALYTLAVGTGGTKPNILTI 59
GM LTLS S+ LKP C I D C A+ Q FF LY +A+GTGG KP + +
Sbjct: 126 GMSALTLSASVPALKPAEC----IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSF 181
Query: 60 AADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAI 119
ADQFDD + +E+ K SFFNW+ FSI G L+ ++ LV+IQ++ GW LG+G+PT+ + +
Sbjct: 182 GADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGL 241
Query: 120 SIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGK 179
+I F GTP YR +KP GSP TR+++V+VA+ RK +V +P D LYE + A G
Sbjct: 242 AIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGS 301
Query: 180 YMIGSTQNLRFFNKAAV------KTGS-TNPWMLCSVTQVEETKQMLAMIPILVAMFVPS 232
I T + ++ +KAAV K+G +N W LC+VTQVEE K ++ M PI + + S
Sbjct: 302 RKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFS 361
Query: 233 TMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTK 292
+ AQ++T+FV+QG ++ IGS F++PPA+L F T S+++ V LYDR+ V + R++T
Sbjct: 362 AVYAQMSTMFVQQGRAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTG 420
Query: 293 NPRGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352
+G T +QR A+ E RL +A D G+VE G VP+++ +PQ+
Sbjct: 421 VDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYF 480
Query: 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGH 412
++G A+ F + ++EFFYDQ+P++M+SL ++ ++ T +GN+LSS +L+ V+ T R+G
Sbjct: 481 ILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQ 540
Query: 413 KGWILNNLNVSHLDYYYAFFA 433
+GWI +NLN HLDY++ A
Sbjct: 541 EGWISDNLNSGHLDYFFWLLA 561
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 184/436 (42%), Positives = 271/436 (62%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LTLS SL LKP C + C A+T+Q FF LY +A+GTGG KP + +
Sbjct: 137 GMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDD +P+E+ K SFFNW+ FSI G+ + +T LV++Q++VGW LG+ +PT+ + +S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
I F GTP YR +KP GSP TR+ +V+VA RK + LP D LYE + G
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316
Query: 181 MIGSTQNLRFFNKAAV------KTGS-TNPWMLCSVTQVEETKQMLAMIPILVAMFVPST 233
I T +F +KAAV K+G+ +NPW LC+VTQVEE K ++ M PI + V S
Sbjct: 317 KIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSV 376
Query: 234 MLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKN 293
+ +QI+TLFV+QG +++R I SF+IPPAS F TL +L+ + +YDR+ V RR+T
Sbjct: 377 LYSQISTLFVQQGRSMNRII-RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGI 435
Query: 294 PRGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353
P+G+T LQR A+ E RL +A+D V ++IF +PQ++L
Sbjct: 436 PKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYIL 487
Query: 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHK 413
MG A+ F + ++EFFYD++P++M+S+ ++ ++ VG++LSS +L+ V+ T G
Sbjct: 488 MGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKD 547
Query: 414 GWILNNLNVSHLDYYY 429
GW+ ++LN HLDY++
Sbjct: 548 GWVPDDLNKGHLDYFF 563
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 195/461 (42%), Positives = 279/461 (60%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
GM +LT+S S+ GL P C + C A+ Q F ALY +A+GTGG KP + +
Sbjct: 110 GMTLLTISASVPGLTPT-CSG---ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFG 164
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFDD + KEK K SFFNW+ F I G ++ ++ LV+IQ +VGW G G+PT+ +AI+
Sbjct: 165 ADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIA 224
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYE-LDLEAYAQKGK 179
+V F AG+ FYR +KP GSP TRM +VIVA+ RK V +P D LYE D E+ + G
Sbjct: 225 VVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAES-SIIGS 283
Query: 180 YMIGSTQNLRFFNKAAVKTGSTNP-------WMLCSVTQVEETKQMLAMIPILVAMFVPS 232
+ T+ L FF+KAAV+T S N W LC+VTQVEE K ++ ++PI V +
Sbjct: 284 RKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFA 343
Query: 233 TMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTK 292
++ +Q+ T+FV QG TLD+ +G +FKIP ASL+ F TLS+L +YD+ V R++T
Sbjct: 344 SVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTG 403
Query: 293 NPRGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352
+ RG T LQR A E RL+ + H + + + +P+TIF +PQ+
Sbjct: 404 HERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQVPQYF 462
Query: 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGH 412
L+G A+ F + ++EFFYDQAP++M+SL ++ S+T + GN+LS+FL++ V+ T+ G
Sbjct: 463 LVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGR 522
Query: 413 KGWILNNLNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYK 453
GWI NLN HLDY++ A AK+Y YK
Sbjct: 523 PGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563
|
|
| TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
Identities = 173/427 (40%), Positives = 255/427 (59%)
Query: 38 FFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTAL 97
FF ALY +AVG GG KP ++T AADQF + +EKA K SFFN+W +I + + AL
Sbjct: 117 FFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLAL 176
Query: 98 VYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNV 157
++IQ+ V W+LG+ + + I+IVIFL G P YR + P GSPFTR+A+V+VA ++KW +
Sbjct: 177 IFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRL 236
Query: 158 PLPTDPREL-YELD----LEAYAQKGKYMIGSTQNLRFFNKAAV-----KTGSTNPWMLC 207
L YE + LE+ Y++ T RF +KA + + NPW LC
Sbjct: 237 SSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNRNPWRLC 296
Query: 208 SVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGF 267
+V QVEE K +L +IPI +++ + L Q+NT F+KQG+ +DR IG+ F IPPA+
Sbjct: 297 TVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSI 356
Query: 268 VTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRXXXXXXXXXXXXXXASFTERYRLSV 327
V +++L+ + LYDR FV + R+ T + GIT LQR E RL V
Sbjct: 357 VGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKV 416
Query: 328 AKDHGIVEKGQQV-PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM 386
A+DHG+++ ++V P++ LLPQ++L+G D F V E FYDQ PE+M+S+G + +
Sbjct: 417 ARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFI 476
Query: 387 TTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAIXXXXXXXXXXXX 446
+ +GVG+F+S+ ++STV +K HG + W++NNLN +HLDYYY A
Sbjct: 477 SVVGVGSFVSTGIISTVQTISKSHGEE-WLVNNLNRAHLDYYYWIIASLNAVSLCFYLFI 535
Query: 447 AKFYVYK 453
A ++YK
Sbjct: 536 ANHFLYK 542
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 101/231 (43%), Positives = 147/231 (63%)
Query: 200 STNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKI 259
+TNPW LC+VTQVEE K +L ++PI + + S + +QI TLFV+QG + R IG F+I
Sbjct: 293 NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGL-FEI 351
Query: 260 PPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRXXXXXXXXXXXXXXASF 319
PPA+L F T S+L+ V +YDR V + RR+T +G T LQR A+
Sbjct: 352 PPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAI 411
Query: 320 TERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKS 379
E RL +A+D +VE G VPL IF +PQ+ LMGTA F V +IEFFY+Q+P+SM+S
Sbjct: 412 VETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRS 471
Query: 380 LGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWI-LNNLNVSHLDYYY 429
L +++++ T +GN+LSS +++ V+ + G WI +N+N HLDY++
Sbjct: 472 LCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWIPSDNINNGHLDYFF 519
|
|
| TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 187/475 (39%), Positives = 273/475 (57%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
G+I+LTLS + GLK C + + RKA + AFF A+Y +++GTGG KP++ +
Sbjct: 122 GLILLTLSWFIPGLKA--CHEDMCVEPRKAHEI---AFFIAIYLISIGTGGHKPSLESFG 176
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQF+D P+E+ K S+FNWW + G L T +VYI+D +GW + + T+ +A S
Sbjct: 177 ADQFEDGHPEERKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATS 236
Query: 121 IVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180
IF G PFYR++ P+GSP T M +V VA I K N+P P+D L+EL E Y KG+
Sbjct: 237 FFIFRIGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYT-KGR- 294
Query: 181 MIGSTQNLRFFNKAAV--------KTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPS 232
++ S++NL+F +KAAV K +PW L +VT+VEE K ++ MIPI
Sbjct: 295 LLSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFG 354
Query: 233 TMLAQINTLFVKQGTTLDRAI-GSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWT 291
Q +TLF+KQ +DR I G+SF +PPASL + LS+++ V +Y++ V + RR T
Sbjct: 355 VCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRAT 414
Query: 292 KNPRGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351
N RGI++LQR A+ E+ RL AK+H + + + L+ L PQF
Sbjct: 415 GNERGISILQRIGVGMVFSLFAMIIAALIEKKRLDYAKEHHM---NKTMTLSAIWLAPQF 471
Query: 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRH- 410
+++G ADAF V E+FYDQ P+SM+SLG ++ ++ LG +F+++ L+ TVSD
Sbjct: 472 LVLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLGAASFVNNLLI-TVSDHLAEEI 530
Query: 411 GHKGWILNNLNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKTEVSDSMEVLTE 465
KGW +LN S LD +Y A A Y YKT V S+ V+ +
Sbjct: 531 SGKGWFGKDLNSSRLDRFYWMLAALTAANICCFVIVAMRYTYKT-VQPSLAVVAD 584
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FNL7 | PTR3_ARATH | No assigned EC number | 0.6950 | 0.9668 | 0.8024 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 483 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 5e-80 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 7e-14 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 9e-10 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 1e-07 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 0.001 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 0.002 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 253 bits (647), Expect = 5e-80
Identities = 122/391 (31%), Positives = 179/391 (45%), Gaps = 36/391 (9%)
Query: 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIA 60
G ++LTL L P +Q+ F+ LY +A+GTGG KPN+
Sbjct: 14 GHVLLTLGAIPPSLSP----------------VQVALFYIGLYLIALGTGGIKPNVSAFG 57
Query: 61 ADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAIS 120
ADQFD+ + + FF+W+ FSI G+L+ Y+Q +VG+ LG+GLP +G+ ++
Sbjct: 58 ADQFDETQDPRRD---GFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLA 114
Query: 121 IVIFLAGTPFYRHK-KPTGSPFTRMAKVIVATIRKWNVPL--PTDPRELYELDLEAYAQK 177
+++FL G+ Y+ K P GSPFT I+ T N L P D LY + +
Sbjct: 115 LLVFLLGSRRYKKKAPPGGSPFTVCIAFII-TAAGKNRKLQLPKDSHWLYWALEKYNKRS 173
Query: 178 GKYMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQ 237
T + K + V + +L M+PI +P M Q
Sbjct: 174 ISQTKVHT-RVAVIFIPLPKFWALF----DQQGSVWLLQAILLMLPIWAFWILPDQMWTQ 228
Query: 238 INTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGI 297
+ TL V+Q T+DR I F+IPPAS F L++L+ + + D + R RG+
Sbjct: 229 LATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR----LKRGL 284
Query: 298 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTA 357
TL QR G+G+ I I+ +A+ E R A G+ G VPL I LP+ + G
Sbjct: 285 TLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFISGVG 344
Query: 358 DAFLEVAKIEFFYDQAPESMKSLGTSYSMTT 388
+EF D P SM SL T S
Sbjct: 345 ----LAGALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-14
Identities = 72/384 (18%), Positives = 136/384 (35%), Gaps = 50/384 (13%)
Query: 31 STLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGT 90
S G + L + VGTG KPNI ++ + + PK+ + F + I G+
Sbjct: 113 SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGS 168
Query: 91 LLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVA 150
L+ + + GW +G+GL +G+ I +VIFL G RH K G
Sbjct: 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR---RHVKGIGGV---------- 215
Query: 151 TIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAAVKTGSTNP-----WM 205
P P L + ++ N F+ +
Sbjct: 216 -----PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEA 270
Query: 206 LCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTT-LDRAIGSSFKIPPASL 264
S +E +++LA IP+ + + + Q+ + ++R I F++PPA
Sbjct: 271 FRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWF 329
Query: 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQ---RMGIGLVIHIIIMVIASFTE 321
+++ + + WTK RG + +GL++ + +I
Sbjct: 330 QSLNPFFIILFSPI----LAAL---WTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAG 382
Query: 322 RYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLG 381
+ G+V +++ L+ +VL + F+ + AP ++KS
Sbjct: 383 IWF---GGPSGLV--------SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFI 431
Query: 382 TSYSMTTLGVGNFLSSFLLSTVSD 405
+ T+ G L + +
Sbjct: 432 MAMWFLTVAAGQTLGGQVAGLTAV 455
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 8/151 (5%)
Query: 45 LAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV 104
LA+ GT ++A D FE ++ + +F FF+++ F+I G+L ++ DV
Sbjct: 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDV 151
Query: 105 G-------WALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNV 157
G + L +G+P + + +++++F G+ Y+ K P G+ +++ K IV ++K
Sbjct: 152 GCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFR 211
Query: 158 PLPTDPRELYELDLEAYAQKGKYMIGSTQNL 188
D L+ LD A + MI ST+ L
Sbjct: 212 TRSEDWPRLHWLD-WAAPKYLIRMIRSTKRL 241
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 30 ASTLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFG 89
A ++ F L T+AVG+G K N ++ ++ + + F+ F SI G
Sbjct: 97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLF---YMSINIG 153
Query: 90 TLLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAK 146
+ + I ++ G+ +G+ L +G+ I ++ F AG R P + K
Sbjct: 154 SFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGK 210
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 30 ASTLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFF- 88
AS + + +L + G G K N+ + + ++ +P+ FS+ +
Sbjct: 95 ASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG---------FSLMYA 145
Query: 89 ----GTLLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKK 135
G+++ A Y Q++ WA+G+GL +G+ +VIFL G + H +
Sbjct: 146 AGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196
|
Length = 493 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 328 AKDHGI-VEKGQQVP---LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTS 383
G+ ++ + VP ++I LPQ+VL + V +EF Y QAP +MKS+ +
Sbjct: 532 PTIDGLQLQIVEDVPVNTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQA 591
Query: 384 YSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFF 443
+ T+ +GN ++ + + + N++ + F+ L ++ F
Sbjct: 592 LWLLTVAIGN-----IIVLIIAEFE------------NMAVQWAEFVLFSSLMLVVMAIF 634
Query: 444 LVVAKFY 450
++A Y
Sbjct: 635 SILAYTY 641
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.65 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.63 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.6 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.6 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.59 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.59 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.58 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.57 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.57 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.57 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.54 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.53 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.53 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.53 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.53 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.52 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.51 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.49 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.49 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.48 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.45 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.44 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.44 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.44 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.44 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.44 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.44 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.42 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.42 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.41 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.41 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.4 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.4 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.4 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.4 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.39 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.37 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.37 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.35 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.35 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.35 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.34 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.34 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.34 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.33 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.33 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.33 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.33 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.33 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.32 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.31 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.3 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.3 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.29 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.29 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.28 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.28 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.28 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.26 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.26 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.25 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.24 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.24 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.24 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.24 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.22 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.21 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.18 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.18 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.13 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.11 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.1 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.1 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.08 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.02 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.02 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.0 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.89 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.79 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.78 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.78 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.76 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.76 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.71 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.66 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.61 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.59 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.59 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.58 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.57 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.56 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.55 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.54 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.54 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.52 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.51 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.5 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.5 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.49 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.48 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.46 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.45 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.44 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.43 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.42 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.41 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.41 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.41 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.39 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.38 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.38 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.33 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.32 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.31 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.31 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.3 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.3 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.28 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.26 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.22 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.2 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.18 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.18 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.18 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.17 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.16 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.15 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.15 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.12 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.12 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.1 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.1 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.08 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.06 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.05 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.04 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.04 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.04 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.03 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.02 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.02 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.99 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.98 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.98 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.98 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 97.95 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 97.93 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.89 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.88 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.86 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.85 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.83 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.83 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.83 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.82 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.78 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.76 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.76 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.75 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.74 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.73 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.66 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.62 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.62 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.62 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.62 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.61 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.59 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.59 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.56 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.53 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 97.52 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.49 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.43 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.4 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.39 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.38 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.36 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.34 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.34 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.28 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.26 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.23 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.21 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.19 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.17 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.15 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.08 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 96.93 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.9 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.79 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 96.76 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.74 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 96.7 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.62 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.6 | |
| PRK11462 | 460 | putative transporter; Provisional | 96.59 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 96.51 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.44 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.41 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 96.33 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 96.33 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.18 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 96.15 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 96.14 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 96.1 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.05 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 96.0 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.93 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.72 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.55 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 95.55 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 95.33 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 95.05 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 94.8 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 94.62 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.59 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 94.2 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 93.76 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 93.36 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 92.81 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.9 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 91.87 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.78 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 90.89 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 90.76 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 90.03 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 89.9 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 89.44 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 89.14 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 87.08 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 86.72 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 86.08 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 85.08 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 84.84 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 84.63 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 83.89 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 82.55 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 81.7 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=465.49 Aligned_cols=444 Identities=47% Similarity=0.778 Sum_probs=392.9
Q ss_pred CcEEEeeeccccCCCCCCCC-CCCccccccccchhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhH
Q 041163 1 GMIVLTLSVSLAGLKPPPCK-DINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFF 79 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f 79 (483)
|+.+|++++++|.++||+|. .+.+..|+.++......++.++.++++|.|+.|||..++++|||++.+++|++++.++|
T Consensus 117 G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fF 196 (571)
T KOG1237|consen 117 GLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFF 196 (571)
T ss_pred HHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccch
Confidence 46678999999999999983 22234689999999999999999999999999999999999999988888888888999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccccccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCC
Q 041163 80 NWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPL 159 (483)
Q Consensus 80 ~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~ 159 (483)
+|+|+..|+|.+++..+..+++++.||.++|.++++.|++++++|+.+.+.|++++|.++|+..+.+++..+.+++....
T Consensus 197 nW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 197 NWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred CCCcchhhhhhhHHHhhcCcccccCCcchhHHHHhhhhcC-------CCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 041163 160 PTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAAVKTG-------STNPWMLCSVTQVEETKQMLAMIPILVAMFVPS 232 (483)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-------~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~ 232 (483)
+.+..+..+.. .+.....+++..+++|.++.+.. ..++|+.++.++|||.|..++++|++...++||
T Consensus 277 ~~~~~~~~~~~------~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~ 350 (571)
T KOG1237|consen 277 SLDPEELYYDC------TDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYS 350 (571)
T ss_pred CCcchhccccc------cccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHH
Confidence 43322220000 01112233456788888776432 237799999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHH
Q 041163 233 TMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHII 312 (483)
Q Consensus 233 ~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i 312 (483)
.++.|+.|.++.|+.+||++++.+|++|+++++.+..+.++++.|++++++.|+.+|.+++|+++++++|+.+|+++..+
T Consensus 351 ~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~ 430 (571)
T KOG1237|consen 351 TVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSIL 430 (571)
T ss_pred HHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHH
Confidence 99999999999999999999882399999999999999999999999999999999988877778999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHH
Q 041163 313 IMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVG 392 (483)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG 392 (483)
++...+++|.+|++.+.+ +....+++|++|++|||+++|+||++.+++++||.++++|++||+..+++|.+..++|
T Consensus 431 sm~~aa~vE~krl~~~~~----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G 506 (571)
T KOG1237|consen 431 SMAVAGIVEAKRLKTAVS----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVG 506 (571)
T ss_pred HHHHHHHHHHHHhhhhhh----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999988765 1223468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccccccCCcccccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 041163 393 NFLSSFLLSTVSDKTKRHGHKGWIL-NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEV 456 (483)
Q Consensus 393 ~~lg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~~ 456 (483)
++++.+++..+...++. ..+|++ +++|.++++++|++++.+..++.+.+.+++++|+.++++
T Consensus 507 ~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 507 NYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 99999999999887642 357999 899999999999999999999999999999999887754
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=391.88 Aligned_cols=371 Identities=17% Similarity=0.280 Sum_probs=287.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+...++++++++++|+|++|||++++++|+|+++|+ |||++|+++|+++|+|++++|++++++++++||+.+|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3678999999999999999999999999999999987 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecC--CCCCccchH------HHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccC
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKK--PTGSPFTRM------AKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGS 184 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~--p~~~~l~~~------~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (483)
+++.|++++++|+++++++++.+ |++.|+..- ..++...+... ...+...+..+..
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~--------- 254 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL-------LTLLLNQNTFSGV--------- 254 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHH---------
Confidence 99999999999999999876652 444444321 11111111100 0000000000000
Q ss_pred CcchhHHHH-hhhhcC-CCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-hhcccCCCCCeeeCC
Q 041163 185 TQNLRFFNK-AAVKTG-STNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPP 261 (483)
Q Consensus 185 ~~~~~~l~~-a~~~~~-~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~-~~~~~~~~~g~~i~~ 261 (483)
..-... ....+. ....+ +++. +|||+++..+++++..++||++|+|++|.+..++ +++|++.. |+++|+
T Consensus 255 ---~~~~~i~~~~~~~~~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~ 326 (498)
T COG3104 255 ---LLVISILIAIIYFAEAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPP 326 (498)
T ss_pred ---HHHHHHHHHHHHHHHHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCH
Confidence 000000 000000 00111 3334 8899999999999999999999999999997775 67777756 799999
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++|++||+++++++|+++++|+|+.+++ ++ +++..|+++|+++++++++++.....+.. ++...
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~-----------~~~~~ 391 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFG-----------GPSGL 391 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhc-----------CCCCC
Confidence 99999999999999999999999988764 34 89999999999999999999888753311 01235
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+|+||++++|+++++||++++|+++|++++++|+++++.+||.|+++.+.|+.+++.+.++... ++ +..+
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~---------~~~~ 461 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD---------PAYT 461 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc---------hhhh
Confidence 7999999999999999999999999999999999999999999999999999999999885442 10 0011
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEV 456 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~~ 456 (483)
..+...+|+.++..+++..+++....++.+|..+.
T Consensus 462 ~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~ 496 (498)
T COG3104 462 AFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG 496 (498)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence 12235689999999999999999999887776654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=330.58 Aligned_cols=378 Identities=13% Similarity=0.202 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhHH
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTL 115 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v 115 (483)
..+++++.++++|.|+++|+.+++++|+||++|+ +|+++|+++|+++|+|++++|++++++.+++||+.+|.++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3466778888999999999999999999998764 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcceeecCC-CCCccch--HHHHHH--HHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhH
Q 041163 116 GLAISIVIFLAGTPFYRHKKP-TGSPFTR--MAKVIV--ATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRF 190 (483)
Q Consensus 116 ~~~i~lii~~~~~~~~~~~~p-~~~~l~~--~~~v~~--~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (483)
.+++++++++.+++.+.+..+ +++|.++ ...... .++..... +.........+..++.. -.
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~ 242 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVAT--PALITVLFWKEWSVYAL------------IV 242 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------------HH
Confidence 999999999888776544211 1122211 100000 00000000 00000000000000000 00
Q ss_pred HHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-hhcccCCCCCeeeCCCCccchhH
Q 041163 191 FNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPPASLTGFVT 269 (483)
Q Consensus 191 l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~-~~~~~~~~~g~~i~~~~l~~in~ 269 (483)
.......+.. +...+..+.+|||++..++++++..++||+.|+|.++.+..++ +++|++++ |+++|++|+|++||
T Consensus 243 ~~~~~~~~~~---~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp 318 (493)
T PRK15462 243 ATIIGLGVLA---KIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINA 318 (493)
T ss_pred HHHHHHHHHH---HHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhH
Confidence 0000000000 0000112347799999999999999999999999999986665 78999988 89999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHH
Q 041163 270 LSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLP 349 (483)
Q Consensus 270 ~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 349 (483)
++++++.|++.++|.++.+| +++ ++.++|+++|++++++|++++.+.... ..+ ...+|++|++.
T Consensus 319 ~~ii~l~P~~a~lw~~l~~~-~~~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~--------~~~~s~~wl~~ 382 (493)
T PRK15462 319 FAVMLCGVFLAWVVKESVAG-NRT---VRIWGKFALGLGLMSAGFCILTLSARW----SAM--------YGHSSLPLMVL 382 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC--------CCCcCHHHHHH
Confidence 99999999999999887554 223 899999999999999999998876521 111 12479999999
Q ss_pred HHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHH-HHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHH
Q 041163 350 QFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTT-LGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYY 428 (483)
Q Consensus 350 ~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~-~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (483)
.|+++++||++++|.+++++++.+|++.+|++||+|++. .++|+.+++.+.+.....+.. +-....-+..++..+
T Consensus 383 ~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 458 (493)
T PRK15462 383 GLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD----ASGAINYSINAYIEV 458 (493)
T ss_pred HHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----ccccccchhhhHHHH
Confidence 999999999999999999999999999999999999995 489999999999888632110 000000001235678
Q ss_pred HHHHHHHHHHH-H-HHHHHhhhccccccc
Q 041163 429 YAFFAILNVLN-F-VFFLVVAKFYVYKTE 455 (483)
Q Consensus 429 f~~~~~l~lv~-~-l~~~~~~~~~~~~~~ 455 (483)
|..++..+++. + ++++.+.+.+|.+++
T Consensus 459 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 459 FDQITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88888877766 4 444445555555543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=330.51 Aligned_cols=361 Identities=23% Similarity=0.437 Sum_probs=294.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc-------cc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV-------GW 106 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~-------g~ 106 (483)
....++++++++++|.|++|||..++++|||++++ +++++++|+|+|+++|+|+++++++.+++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 34557899999999999999999999999998643 236899999999999999999999999998554 69
Q ss_pred cccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCc
Q 041163 107 ALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQ 186 (483)
Q Consensus 107 ~~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 186 (483)
+++|.+++++|++++++++.+++++++++|.++++.+..+++..+++++..... ...
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-----------------------~~~ 217 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-----------------------EHW 217 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-----------------------ccc
Confidence 999999999999999999999999888788888877777887777765421110 000
Q ss_pred chhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccc
Q 041163 187 NLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTG 266 (483)
Q Consensus 187 ~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~ 266 (483)
..+|+|.++.+. .+++++|+|++++++++++..++||..|+|+.+.+..|+.+++.+++ ++.+|++++++
T Consensus 218 ~~~~ld~a~~~~---------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~ 287 (654)
T TIGR00926 218 PLHWLDYAKDKH---------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQV 287 (654)
T ss_pred chhHHHHhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHH
Confidence 135666554422 24568899999999999999999999999999999999999988887 89999999999
Q ss_pred hhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------------
Q 041163 267 FVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSV------------------- 327 (483)
Q Consensus 267 in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~------------------- 327 (483)
+|++.++++.|++++.++|.++|++.+ +++++|+++|+++++++++++.+.|..++..
T Consensus 288 ~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (654)
T TIGR00926 288 VNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDC 364 (654)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCC
Confidence 999999999999998889988876544 7999999999999999999999999875500
Q ss_pred -----------------------h-------------h--------------------------h----c-C----C---
Q 041163 328 -----------------------A-------------K--------------------------D----H-G----I--- 333 (483)
Q Consensus 328 -----------------------~-------------~--------------------------~----~-~----~--- 333 (483)
. . + . + .
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (654)
T TIGR00926 365 TICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVLLLS 444 (654)
T ss_pred CcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEEEEe
Confidence 0 0 0 0 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 041163 334 -------------------------------------------------------------------------------- 333 (483)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (483)
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (654)
T TIGR00926 445 QGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNAKSS 524 (654)
T ss_pred cCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccccccc
Confidence
Q ss_pred ------c-----------cCC-------------CCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHH
Q 041163 334 ------V-----------EKG-------------QQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTS 383 (483)
Q Consensus 334 ------~-----------~~~-------------~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g 383 (483)
. ++. +.+++|++|++|||+++++||++.+.+++|+.++++|++||+..++
T Consensus 525 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a 604 (654)
T TIGR00926 525 TFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQA 604 (654)
T ss_pred cccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHH
Confidence 0 000 0234688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 041163 384 YSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFY 450 (483)
Q Consensus 384 ~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~ 450 (483)
+|.++.++|+.+...+...-... +....|..+++++++..++|.++++.|
T Consensus 605 ~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 605 LWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988776544321 123457777888888888888877654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=325.35 Aligned_cols=354 Identities=32% Similarity=0.561 Sum_probs=237.4
Q ss_pred CcEEEeeeccccCCCCCCCCCCCccccccccchhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHH
Q 041163 1 GMIVLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFN 80 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~ 80 (483)
||++|++++++++++ +..+.+.++++|+++++|+|++|||++++++|||+++++ ++|+++|+
T Consensus 14 G~~ll~l~~~~~~~~---------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~ 75 (372)
T PF00854_consen 14 GHVLLTLSAIPPSLP---------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFN 75 (372)
T ss_dssp HHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHH
T ss_pred HHHHhHHHHhcchhh---------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHH
Confidence 678889999776552 244688999999999999999999999999999998742 26899999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccccccchhhHHHHHHHHHHHHhcCcceeec-CCCCCccch-HHHHHHHHHHhCCcC
Q 041163 81 WWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHK-KPTGSPFTR-MAKVIVATIRKWNVP 158 (483)
Q Consensus 81 ~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v~~~i~lii~~~~~~~~~~~-~p~~~~l~~-~~~v~~~a~~~~~~~ 158 (483)
+||+++|+|+++++.+.+++++++||+++|+++++++++++++++.++++|++. +|.++++.+ ...+...+.+++...
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLA 155 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCC
T ss_pred HHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999887 788888887 334444444444332
Q ss_pred CCCCcchhhhhhhHHHhhcCcccccCCcchhHHHHhhhhcCCCCCccc-ccchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 159 LPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAAVKTGSTNPWML-CSVTQVEETKQMLAMIPILVAMFVPSTMLAQ 237 (483)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~-~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q 237 (483)
.+.....+.+... .. ... ...........+.........|.. ++++++++.|.+.+.++.+...+.|+..+.|
T Consensus 156 ~~~~~~~~~~~~~-~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~ 229 (372)
T PF00854_consen 156 VPKGSSWLDWALF-QY---SER--SIFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQ 229 (372)
T ss_dssp H-HHHHHHHHHHH-HH---CCC--CCCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTC
T ss_pred cccchHHHHHhhh-hh---hhh--hhhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhh
Confidence 2111111111100 00 000 000000111101100000001110 2345667777777777777777777788788
Q ss_pred chhHHHHHHhhcccCCCCC-eeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 041163 238 INTLFVKQGTTLDRAIGSS-FKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVI 316 (483)
Q Consensus 238 ~~t~~~~~~~~~~~~~~~g-~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~ 316 (483)
.++....|..++|+.++ + +++|+++++++|++.++++.|+++++++|+.++ +++ ++++.|+++|++++.++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~ 304 (372)
T PF00854_consen 230 LNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFV 304 (372)
T ss_dssp CHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHT
T ss_pred hhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHH
Confidence 77777788888887777 7 899999999999999999999999999999883 333 79999999999999999999
Q ss_pred HHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHH
Q 041163 317 ASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV 391 (483)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~i 391 (483)
...++.+|....++++ ..+.+|+++.+++++++|.+.++++.+.+++.+|+++++.++|+|+....+
T Consensus 305 ~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 305 AAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp TTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred HHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 9988876654443332 446689999999999999999999999999999999999999999877654
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=309.89 Aligned_cols=368 Identities=13% Similarity=0.206 Sum_probs=267.8
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhHHH
Q 041163 37 AFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLG 116 (483)
Q Consensus 37 ~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v~ 116 (483)
.++++++++++|+|+++|+..++++|+||++++ ||+++|+++|+++|+|+++||.++|++.+++||+++|+++++.
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 466899999999999999999999999988653 4688999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCcceeec--CCCCCccchHHHHHH---------HHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCC
Q 041163 117 LAISIVIFLAGTPFYRHK--KPTGSPFTRMAKVIV---------ATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGST 185 (483)
Q Consensus 117 ~~i~lii~~~~~~~~~~~--~p~~~~l~~~~~v~~---------~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (483)
++++++.++..++.+++. +|++++. +..+.+. ..+.... .. .... .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~~~~~~~~-~~-~~~~--------~~----------- 240 (489)
T PRK10207 183 LIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMIFVCAWLM-HN-VEVA--------NL----------- 240 (489)
T ss_pred HHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHHHHHHHHHH-hh-hhHH--------HH-----------
Confidence 888888888877666543 2333322 1111110 0000000 00 0000 00
Q ss_pred cchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHh-hcccCCCCCeeeCCCCc
Q 041163 186 QNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPASL 264 (483)
Q Consensus 186 ~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~-~~~~~~~~g~~i~~~~l 264 (483)
.+............++..+.+ ..++++.+..+.+++..++||..|+|+.+.+..+.+ +++++.. |+.++++++
T Consensus 241 ----~~~~~~~i~~~~f~~~~~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~ 314 (489)
T PRK10207 241 ----VLIVLSIVVTIIFFREAFKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSF 314 (489)
T ss_pred ----HHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHH
Confidence 000000000000000000112 244666667777788899999999999888877765 5777666 899999999
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchH
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI 344 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 344 (483)
|++|++.++++.|+.++++.++.+| +.+ +++.+|+++|+++++++++.+.+.+... ... ...+|+
T Consensus 315 ~~~n~~~iii~~pl~~~l~~rl~~r-~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~--------~~~~s~ 379 (489)
T PRK10207 315 QALNPFWVVVASPILAGIYTHLGSK-GKD---LSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA--------QGLTSP 379 (489)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHhhC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC--------CCccCH
Confidence 9999999999999999988777554 333 7999999999999999988766543210 000 113588
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcc
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSH 424 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
||+++.|++.++||++.+|++++++++.+|++++|.+||+|++..++|+.+|+.+++.+...... .++. ..++.
T Consensus 380 ~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~--~~~~----~~~~~ 453 (489)
T PRK10207 380 WFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNI--TDPL----ETLPV 453 (489)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--ccch----hhhhh
Confidence 99999999999999999999999999999999999999999999999999999999877532110 0000 01233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 041163 425 LDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVS 457 (483)
Q Consensus 425 ~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~~~ 457 (483)
+..+|..+++.+++.+++++++.|+++|.+++.
T Consensus 454 ~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 486 (489)
T PRK10207 454 YTNVFGKIGLVTLGVAVVMALMVPWLNRMINTP 486 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 578899999999999999999999888876543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=304.62 Aligned_cols=359 Identities=14% Similarity=0.191 Sum_probs=265.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.++++++++++|.|+++|+..++++|++++++++ +|+++|+++|++.|+|+++||++++++.+++||++.|.++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3567788999999999999999999999999876531 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchH-----H--HHH----HHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccc
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRM-----A--KVI----VATIRKWNVPLPTDPRELYELDLEAYAQKGKYMI 182 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~-----~--~v~----~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (483)
++.++++++++++.++.+++.++++++..+. . ..+ ...++..+........ +..
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------- 242 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIA--------NIL------- 242 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH--------HHH-------
Confidence 9988888888888777665443333322110 0 000 0011100000000000 000
Q ss_pred cCCcchhHHHHhhhhc---CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH-HhhcccCCCCCee
Q 041163 183 GSTQNLRFFNKAAVKT---GSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQ-GTTLDRAIGSSFK 258 (483)
Q Consensus 183 ~~~~~~~~l~~a~~~~---~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~-~~~~~~~~~~g~~ 258 (483)
..-...+...+ ....+ +.++ +++++...++++++..++||++|+|+.+++..+ .+++|++++ +++
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ 311 (475)
T TIGR00924 243 -----LMTVTLAVIIFFFRLAFKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMS 311 (475)
T ss_pred -----HHHHHHHHHHHHHHHHHhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceE
Confidence 00000000000 00001 1122 334555668899999999999999999988554 466888877 899
Q ss_pred eCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCC
Q 041163 259 IPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQ 338 (483)
Q Consensus 259 i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (483)
+|+++++++|++.+++++|++++++.++.+| +++ ++...|+++|+++.+++++.+++...+ +++
T Consensus 312 ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~-------- 375 (475)
T TIGR00924 312 VPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK-GKD---PTTPLKFTLGMLFCGASFLTFAASIWF----ADA-------- 375 (475)
T ss_pred ECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC--------
Confidence 9999999999999999999999887666554 233 688999999999999999998876311 111
Q ss_pred CccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccC
Q 041163 339 QVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILN 418 (483)
Q Consensus 339 ~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~ 418 (483)
..++|+||+++++++.++||++.+|.+++++++++|+++||+++|++.++.++|+.+|+.+++......
T Consensus 376 ~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------- 444 (475)
T TIGR00924 376 GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------- 444 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 125799999999999999999999999999999999999999999999999999999999988775321
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 041163 419 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 453 (483)
Q Consensus 419 ~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~ 453 (483)
+...+|..+++++++.+++++++.|+++|.
T Consensus 445 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 474 (475)
T TIGR00924 445 -----GVTGVFGKIGLVTLLVGVVMALMVPWLNRM 474 (475)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 125678888999999999999888887653
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=301.56 Aligned_cols=367 Identities=13% Similarity=0.226 Sum_probs=265.9
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhH
Q 041163 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPT 114 (483)
Q Consensus 35 ~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~ 114 (483)
.+.++++++++++|.|+++|+..++++|+||++++ +++++++++|+++|+|+++||++++++.+++||++.|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45677889999999999999999999999987643 46779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeec--CCCCCccch--HH----HHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCc
Q 041163 115 LGLAISIVIFLAGTPFYRHK--KPTGSPFTR--MA----KVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQ 186 (483)
Q Consensus 115 v~~~i~lii~~~~~~~~~~~--~p~~~~l~~--~~----~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 186 (483)
+.++++++.+++.++.+++. +|++++... .. .+............ .. .... ...+. ..
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~--~~~~~---------~~ 253 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLH--NQ-EIAR--MALGV---------VA 253 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHh--cc-hHHH--HHHHH---------HH
Confidence 99999988877766655443 233333211 11 11111111000000 00 0000 00000 00
Q ss_pred chhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-hhcccCCCCCeeeCCCCcc
Q 041163 187 NLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPPASLT 265 (483)
Q Consensus 187 ~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~-~~~~~~~~~g~~i~~~~l~ 265 (483)
........... ++.+ .+|+++.+..+++++..++||++|.|+++.+..|+ +++|+++. |+.+|+++++
T Consensus 254 ~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~ 322 (500)
T PRK09584 254 LGIVVIFGKEA---------FAMK-GAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQ 322 (500)
T ss_pred HHHHHHHHHHH---------hhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHH
Confidence 00000000000 0112 24566666777888889999999999999988776 45666666 7999999999
Q ss_pred chhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHH
Q 041163 266 GFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIF 345 (483)
Q Consensus 266 ~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 345 (483)
++|++.++++.|+.++++.++.+| +++.+|+++|+++++++++.+.+.+.+ ..+ ...+|.|
T Consensus 323 s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--------~~~vs~~ 383 (500)
T PRK09584 323 ALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND--------AGIVSVN 383 (500)
T ss_pred HHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--------CCccCHH
Confidence 999999999999999987666544 578999999999999999998776521 111 2357899
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCC-CCCcc
Q 041163 346 ILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN-LNVSH 424 (483)
Q Consensus 346 ~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 424 (483)
|++++|+++++||++++|.+++++++.+|+++||++||+|.++.++|+.+++.+.+.+..... ..+. ...+.
T Consensus 384 ~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 456 (500)
T PRK09584 384 WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-------VTDPLMSLEV 456 (500)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cccchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999875542110 0000 00122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 041163 425 LDYYYAFFAILNVLNFVFFLVVAKFYVYKTEV 456 (483)
Q Consensus 425 ~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~~ 456 (483)
+..+|..+++++++.+++++++.++++|.++.
T Consensus 457 ~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~ 488 (500)
T PRK09584 457 YGRVFLQIGIATAVIAVLMLLTAPKLNRMTQD 488 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788889998888888889989888887653
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-15 Score=151.27 Aligned_cols=289 Identities=11% Similarity=0.113 Sum_probs=177.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.+.+.|...+++.|.+|++ +|.+++++.+...++|..+||.+++++. .+||+..|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 5677889999999999999999999999999854 4678999999999999999999999998 68999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..++.....++.+. ++..++.. + .+.
T Consensus 171 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~---------------------------~------------------~~~-- 202 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAYKL-STVRTPVR---------------------------E------------------GMT-- 202 (400)
T ss_pred HHHHHHHHHHHHHhCCcccc-cccchhhH---------------------------H------------------HHH--
Confidence 88776665544332221100 00000000 0 000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
+-..+++. .... +....++..+.+....+....++. + +.....+++.+++.+..+
T Consensus 203 ----------------~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~p~~~~~~----~-~~~~~~g~l~~~~~~~~~ 257 (400)
T PRK11646 203 ----------------RVLRDKRF-VTYV---LTLTGYYMLAVQVMLMLPIMVNDI----A-GSPSAVKWMYAIEACLSL 257 (400)
T ss_pred ----------------HHHcCchH-HHHH---HHHHHHHHHHHHHHHhhhhhHHhh----c-CCchHHHHHHHHHHHHHH
Confidence 00001111 1111 111222333333222222211110 1 000112333444444444
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
.+....+++.++ | .+..+++..+.++.+++++.+...+ +.++.+...++
T Consensus 258 ~~~~~~~~~~~~---r-------~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~l 306 (400)
T PRK11646 258 TLLYPIARWSEK---R-------FRLEHRLMAGLLIMSLSMFPIGMVS---------------------NLQQLFTLICL 306 (400)
T ss_pred HHHHHHHHHHHH---h-------cchhHHHHHHHHHHHHHHHHHHHhh---------------------hHHHHHHHHHH
Confidence 333333444322 1 2334456778777777776655443 34445555677
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.++|+.+..|...+.+.+.+|++.+|.++|++++..++|+.+|+.+.|.+.+.++.. +.....|.+.+
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~------------~~~~~~~~~~~ 374 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL------------NQPELPWMMLG 374 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc------------CCcchHHHHHH
Confidence 889999999999999999999999999999999999999999999999998654210 11234555656
Q ss_pred HHHHHHHHHHHH
Q 041163 434 ILNVLNFVFFLV 445 (483)
Q Consensus 434 ~l~lv~~l~~~~ 445 (483)
++++++.+.+..
T Consensus 375 ~~~~~~~~~~~~ 386 (400)
T PRK11646 375 IIGLITLLALYW 386 (400)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-14 Score=146.51 Aligned_cols=300 Identities=12% Similarity=0.041 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.|...|...+++.|.++++ +|.++.++++++.++|.++||.+++++.+..+|++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 4566778888899999888899999999998754 3567889999999999999999999998888999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..+++.+..+..++ .+|++.+..+ .. + ...+.
T Consensus 183 ~~~~~~~~~~~~~l~~----~~~~~~~~~~---------------------~~---~------------------~~~~~ 216 (417)
T PRK10489 183 AAGTFITLLPLLRLPA----LPPPPQPREH---------------------PL---R------------------SLLAG 216 (417)
T ss_pred HHHHHHHHHHHHhCCC----CCCCCccccc---------------------ch---H------------------HHHHH
Confidence 8877766554443222 1111100000 00 0 00000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
.+ .+...+.+...+.. ... +.......+.+.....+. .+.+ ....+++.++..+..+
T Consensus 217 ~~---------------~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~p~~~~~~-~g~~---~~~~g~~~~~~~~g~~ 273 (417)
T PRK10489 217 FR---------------FLLASPVVGGIALL---GGL-LTMASAVRVLYPALADEV-WQMG---AAQIGLLYAAVPLGAA 273 (417)
T ss_pred HH---------------HHHcChHHHHHHHH---HHH-HHHHHhHHHhhHHHHHhc-cCCC---hhHhHHHHHHHHHHHH
Confidence 00 00001111111111 111 111111111111111110 1111 0112334455555555
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+...+.+++. +|. +..+-+..+.++.+++++.+.+.+ +.+......++
T Consensus 274 ig~~~~~~l~----~~~-------~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 321 (417)
T PRK10489 274 LGALTSGWLA----HSA-------RPGLLMLLSTLGSFLAVGLFGLMP---------------------MWILAVLCLAL 321 (417)
T ss_pred HHHHHHHHhh----hcc-------CcchHHHHHHHHHHHHHHHHHccc---------------------hHHHHHHHHHH
Confidence 5555555442 221 122334556666666665544332 44455566778
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.+++.....+...+++.+..|++.||+.+|++.....+|+.+|+.+.+.+.+..+ ....+...+
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g----------------~~~~~~~~~ 385 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT----------------PVASASASG 385 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc----------------hhhHHHHHH
Confidence 8888888888889999999999999999999999999999999999998886332 123455566
Q ss_pred HHHHHHHHHHHHhhhcccccccc
Q 041163 434 ILNVLNFVFFLVVAKFYVYKTEV 456 (483)
Q Consensus 434 ~l~lv~~l~~~~~~~~~~~~~~~ 456 (483)
++.++.+++.+...++.++++.+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~ 408 (417)
T PRK10489 386 FGLLIIGVLLLLVLGELRRFRQT 408 (417)
T ss_pred HHHHHHHHHHHHhcccccccccc
Confidence 66666666665655665555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=143.36 Aligned_cols=316 Identities=11% Similarity=0.119 Sum_probs=177.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc-cccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV-GWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~-g~~~~F~i 112 (483)
+...+++.+++.|+++|...|...+++.+++|++ +|.++.++++.+.++|.++++++++++.+.+ ||+..|++
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 3567888999999999999999999999999864 4678999999999999999999999999884 99999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccc-h-HHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFT-R-MAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRF 190 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~-~-~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (483)
.++..++..++++...+. +|+.++.. + ..+-+..... . ...+
T Consensus 204 ~~~~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~i~~~~~------------------------~----~~~~---- 247 (465)
T TIGR00894 204 FGIVGCAWSLLWFVFPAD----DPSIHPCISKFEKKYINSSLQ------------------------G----QKGS---- 247 (465)
T ss_pred hhHHHHHHHHHHHHHhcC----CcccCCCCCHHHHHHHHhhcc------------------------c----ccCC----
Confidence 998877766555443221 12111100 0 0000000000 0 0000
Q ss_pred HHHhhhhcCCCCCcccccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhH
Q 041163 191 FNKAAVKTGSTNPWMLCSVTQVEETKQMLA-MIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVT 269 (483)
Q Consensus 191 l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~-~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~ 269 (483)
.....+|+ ++...+.+.. .+..+.....++....++++ +..+..+.+. ...+.+.++..
T Consensus 248 -------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~g~s~-------~~~g~~~~~~~ 307 (465)
T TIGR00894 248 -------TRQSLPIK-----AIPKSLPVWAIWFAIFGHFWLYTILPTYLPT-FISWVLRVSG-------KENGLLSSLPY 307 (465)
T ss_pred -------CCCCCCHH-----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcCh-------HHhHHHHHHHH
Confidence 00000010 0000111111 11122222222222233332 2222221111 12345566777
Q ss_pred HHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHH
Q 041163 270 LSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLP 349 (483)
Q Consensus 270 ~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 349 (483)
+..++..++.+++.+++.+|+... ....+++..+..+...+...+.... ...+.++.+.
T Consensus 308 ~~~~i~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 366 (465)
T TIGR00894 308 LFAWLCSIFAGYLADFLKSSKTLS---LTAARKIFNGIGGLGPGIFAYALPY------------------LSAAFYLTII 366 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHH------------------cCCchHHHHH
Confidence 888888888999888876552211 1112233333322222222211111 0013333444
Q ss_pred HHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHH
Q 041163 350 QFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYY 429 (483)
Q Consensus 350 ~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 429 (483)
.+.+.+.+..+..+..+....+.+|+ ..|..+|+.+....+|+.++|.+.+.+.+.++ | +.+...|
T Consensus 367 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~------~-------~~~~~~f 432 (465)
T TIGR00894 367 ILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDS------K-------NVWLIVF 432 (465)
T ss_pred HHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC------c-------hHHHHHH
Confidence 44444444444455566666777887 79999999999999999999999987764221 1 1235567
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041163 430 AFFAILNVLNFVFFLVV 446 (483)
Q Consensus 430 ~~~~~l~lv~~l~~~~~ 446 (483)
.+++++.+++.+++.+.
T Consensus 433 ~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 433 LIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHHHeeee
Confidence 77777777777666554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-13 Score=138.00 Aligned_cols=277 Identities=12% Similarity=0.068 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+...+++.+++.|+|.+...|+..+.+.|+++++ +|.++.+++..+.++|.++|+.+++++.+.+||+..|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4567788999999999999999999999999765 3567889999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++.++ +.++. ++.++++++ . . ++
T Consensus 185 ~~~~~~~~~---~~~~~-~~~~~~~~~----------------------~---------------------~---~~--- 211 (399)
T PRK05122 185 MLLALLGLL---LARPR-PAVPPVKGE----------------------R---------------------L---PF--- 211 (399)
T ss_pred HHHHHHHHH---HHhcC-CCCCCCCcc----------------------c---------------------h---hH---
Confidence 665433322 21211 111110000 0 0 00
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMI-PILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l-~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
.+..|..+... ...+....+ ....+.+.....+ .+.. ..+....+..+..
T Consensus 212 ------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~ 262 (399)
T PRK05122 212 ------------------RRVLGRVWPYGMGLALASIGF----GTIATFITLYYAA--RGWD-----GAALALTLFGVAF 262 (399)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--cccc-----cchHHHHHHHHHH
Confidence 00011111111 111111111 1111111111111 1111 1223334455555
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
++..++.+++.++..+ .+.+..+.++.+++++.....+ +.+++++..+
T Consensus 263 ~~~~~~~g~l~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 310 (399)
T PRK05122 263 VGARLLFGNLINRLGG-----------LRVAIVSLLVEILGLLLLWLAP---------------------SPWMALIGAA 310 (399)
T ss_pred HHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHH
Confidence 5566666666544322 2335566667777766555432 4455666778
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHH
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFF 432 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 432 (483)
+.+++.....|.....+.+..|++.||+.+|+++....+|..+++.+.+.+.+.. ++...|.+.
T Consensus 311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~ 374 (399)
T PRK05122 311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----------------GYPSIFLAA 374 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------CHHHHHHHH
Confidence 9999999999988888889999999999999999999999999998888776422 134566666
Q ss_pred HHHHHHHHHHHHHh
Q 041163 433 AILNVLNFVFFLVV 446 (483)
Q Consensus 433 ~~l~lv~~l~~~~~ 446 (483)
+++.+++.++.+..
T Consensus 375 ~~~~~~~~~~~~~~ 388 (399)
T PRK05122 375 ALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666665554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=140.60 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=176.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.++++++++|++.+...|...+++.|++|++ +|.++++++..+.++|.++||++++.+.+.+||++.|.+.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 6778889999999999999999999999999864 4678999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..+..+...++ . |++++ .. .+ ++.+
T Consensus 170 ~~~~~l~~~~~~~~~~~---~-~~~~~-~~-~~------------------------------------------~~~~- 200 (390)
T PRK03545 170 GGGALITLLLLIKLLPL---L-PSEHS-GS-LK------------------------------------------SLPL- 200 (390)
T ss_pred HHHHHHHHHHHHHhCCC---C-CCCCc-ch-HH------------------------------------------HHHH-
Confidence 88766665444332221 1 11100 00 00 0000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLA-MIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~-~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
-.. .+.+.. ....++....++..+..... +. + +.. +.. ....+.+..+..+..
T Consensus 201 -----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~-~~~--g~s---~~~~~~~~~~~~~~~ 254 (390)
T PRK03545 201 -----------------LFR-RPALVSLYLLTVVVVTAHFTAYSYIEP-FV-Q-QVA--GLS---ENFATLLLLLFGGAG 254 (390)
T ss_pred -----------------HHh-CcHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-Hhc--CCC---ccHHHHHHHHHHHHH
Confidence 000 011111 11111112222222221111 11 1 111 111 001233344445555
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
++..++.+++.++.. .+++.++..+.+++...+.... .+.+++++..+
T Consensus 255 ~~g~~~~g~l~dr~~------------~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~~~ 302 (390)
T PRK03545 255 IIGSVLFSRLGNRHP------------SGFLLIAIALLLVCLLLLLPAA--------------------NSEWHLSVLSI 302 (390)
T ss_pred HHHHHHHHHHhhccc------------hhHHHHHHHHHHHHHHHHHHHh--------------------chHHHHHHHHH
Confidence 555555555533221 2235556666555554432221 14556667778
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHH
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFF 432 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 432 (483)
+.+++.....+...+.+.+..|+ .+|.++|+++....+|..+|+.+.+.+.+..+ +...|...
T Consensus 303 l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g----------------~~~~~~~~ 365 (390)
T PRK03545 303 FWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHLG----------------LSSIGYVG 365 (390)
T ss_pred HHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------------hhHHHHHH
Confidence 88999988888888889888875 78999999999999999999999998885321 24567777
Q ss_pred HHHHHHHHHHHHHhhh
Q 041163 433 AILNVLNFVFFLVVAK 448 (483)
Q Consensus 433 ~~l~lv~~l~~~~~~~ 448 (483)
+.+.+++.+.++...|
T Consensus 366 ~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 366 AALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 7777777777666654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=138.63 Aligned_cols=317 Identities=14% Similarity=0.152 Sum_probs=174.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.|+|.|...|...+++.|++|++ +|.++++++..+.++|.++++.+++++.+.++|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6788899999999999999999999999999854 4678999999999999999999999998999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..++.++..++.+ ++++...+..+-. .. .... .+ .+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~---------~~~~--~~-------------~~-------- 196 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPP---QKAKWLTEEEKYI---VV---------GGLL--AE-------------QQ-------- 196 (399)
T ss_pred HHHHHHHHHHhhheecCCC---CccccCCHHHHhh---cc---------hhhc--cc-------------cc--------
Confidence 8877666555444332211 1100000000000 00 0000 00 00
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
.. ......++ ...+....++ +...++........+....+.+.....+ ..+.. ....+.+.++..+..+
T Consensus 197 -~~-~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~ 265 (399)
T TIGR00893 197 -GK-GPSTPKKY--QIKELLKDRR---VWGLALGQFLVNIGLGFFLTWFPTYLVQ-ERGLS---ILEAGFMASLPGIVGF 265 (399)
T ss_pred -cc-cccCCCcc--chHHHhcCHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhccc---HHHhhHHHHHHHHHHH
Confidence 00 00000000 0000000111 1112222222222222222222111111 01111 0123455566667777
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+..++.+++.+++.+|. ......... ..+..+......+.. ....+.++.+. ..+
T Consensus 266 ~~~~~~g~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~ 320 (399)
T TIGR00893 266 IGMILGGRLSDLLLRRG------KSLVFARKT-AIIAGLVLSLLMFAT-----------------NYVNIPYAALA-LVA 320 (399)
T ss_pred HHHHHHHHHHHHHhhcc------cchhHHHHH-HHHHHHHHHHHHHHh-----------------ccchhHHHHHH-HHH
Confidence 78888888877766552 011110000 011111111111110 00012233333 333
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.+.......|...+++.+..|++.||..+|+.+....+|+.+++.+.+.+.+.. +++...|.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~---------------g~~~~~~~~~~ 385 (399)
T TIGR00893 321 LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT---------------GSFAGALMVVA 385 (399)
T ss_pred HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC---------------CchhHHHHHHH
Confidence 333333478999999999999999999999999999999999999999887532 11355677777
Q ss_pred HHHHHHHHHHHH
Q 041163 434 ILNVLNFVFFLV 445 (483)
Q Consensus 434 ~l~lv~~l~~~~ 445 (483)
++++++.+.+++
T Consensus 386 ~~~~~~~~~~~~ 397 (399)
T TIGR00893 386 ALALIGALSYLL 397 (399)
T ss_pred HHHHHHHHHHHH
Confidence 777776666544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=142.84 Aligned_cols=295 Identities=15% Similarity=0.126 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.+ +.|...+.+.|+++++ +|.++.++++.+.++|.+++|.+++++.+.++|+..|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGG-FVPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 56778888999999866 4588888888988754 4577889999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..+++.+..+...++-. +|.+++... ++-+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------------~~~~~ 211 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENF--QPVSKKEML---------------------------------------------HMREV 211 (408)
T ss_pred HHHHHHHHHHHHHHhccCc--ccccchhhh---------------------------------------------HHHHH
Confidence 9887776655443322110 111000000 00000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
.. . ..+++.... ++.....+........+.+.....+...+.. ......+.+..+..+..+
T Consensus 212 ~~--~-------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~ 272 (408)
T PRK09874 212 VT--S-------------LKNPKLVLS---LFVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAAL 272 (408)
T ss_pred HH--h-------------CcCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHH
Confidence 00 0 000111111 1111111222222222222111111110100 000001223334455556
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+..|+.+++.+++.+| +.+.++..+.+++++.....+ +.+......++
T Consensus 273 ~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 320 (408)
T PRK09874 273 LSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIPMSFVQ---------------------TPLQLGILRFL 320 (408)
T ss_pred HHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHHH
Confidence 6667777765544332 223445555555554433322 44555566678
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.++++....|...+.+.+.+|++.+|..+|++.....+|..+|+.+++.+.+.. .+...|.+.+
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~ 384 (408)
T PRK09874 321 LGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY----------------GFRAVFLVTA 384 (408)
T ss_pred HHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc----------------chhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999887422 1356677788
Q ss_pred HHHHHHHHHHHHhhhc
Q 041163 434 ILNVLNFVFFLVVAKF 449 (483)
Q Consensus 434 ~l~lv~~l~~~~~~~~ 449 (483)
++.+++.+..+...++
T Consensus 385 ~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 385 GVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777766555444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-14 Score=147.08 Aligned_cols=307 Identities=12% Similarity=0.033 Sum_probs=173.3
Q ss_pred hhHHHHH-HHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 34 QLGAFFA-ALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i-~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
+.+.+++ .+++.|++.|...+...+++.+++++ +|.++.++.+.+.++|..++|.+.+++.+.+||++.|++
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 4455554 35778999998767777888898842 357899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..+++.+..++.++.-..++..+....+ ..+.... .++.... .
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-------------------~~~~~~~-~ 224 (455)
T TIGR00892 179 LGGLLLHCCVCGALMRPVGPSQRVSKSKSKE--------------GLPPDGS-------------------TKKLSKK-S 224 (455)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccccccc--------------cCCCCCc-------------------ccccccc-c
Confidence 9998877766554444321110000000000 0000000 0000000 0
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
..+.. .++. +.+ .-..+.+. ............+....+.+.....+ .+.. ....+.+.++..+..
T Consensus 225 ~~~~~----~~~~--~~~-~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s---~~~~g~~~~~~~~~~ 289 (455)
T TIGR00892 225 TAEKI----NRFL--DFS-LFTHRGFL---VYLSGNVIMFLGFFAPIIFLVPYAKD--KGVD---EYEAAFLLSIIGFVD 289 (455)
T ss_pred hhhhh----hhhc--chH-HhcCchHH---HHHHHHHHHHHHccchHHHHHHHHHH--cCCC---HHHHHHHHHHHHHHH
Confidence 00000 0000 000 00011111 11111222222222222222222111 1111 012344556667777
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQR--MGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQ 350 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~k--i~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 350 (483)
++..|+.+++.++.. .+..++ +.+++++.++++++....+ +.++++..
T Consensus 290 ~~~~~~~g~l~d~~~---------~~~~~~~~~~~~~~~~~l~~ll~~~~~---------------------~~~~~~i~ 339 (455)
T TIGR00892 290 IFARPSCGLIAGLKW---------IRPHVQYLFSFALLFNGLTHLLCALAG---------------------DYTGLVIY 339 (455)
T ss_pred HHHHHHHHHHhcccc---------cCHHHHHHHHHHHHHHHHHHHHHHHhc---------------------hHHHHHHH
Confidence 777777777654311 112222 3334444444444333221 55666677
Q ss_pred HHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHH
Q 041163 351 FVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYA 430 (483)
Q Consensus 351 ~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 430 (483)
.++.+++.....+...+.+.+..|++.+|..+|+++...++|+.+|+.+.+.+.+..+ ++...|.
T Consensus 340 ~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g---------------~~~~~f~ 404 (455)
T TIGR00892 340 CIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK---------------NYKYIFY 404 (455)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC---------------CcchHHH
Confidence 7888999999999999999999999999999999999999999999999998875431 1244566
Q ss_pred HHHHHHHHHHH
Q 041163 431 FFAILNVLNFV 441 (483)
Q Consensus 431 ~~~~l~lv~~l 441 (483)
+.+++.+++++
T Consensus 405 ~~~~~~li~~~ 415 (455)
T TIGR00892 405 ASGSIVVSAGL 415 (455)
T ss_pred HhhHHHHHHHH
Confidence 66666555544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-13 Score=136.79 Aligned_cols=278 Identities=13% Similarity=0.045 Sum_probs=174.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+.+.+++.+++.+.+.+...|...++..+. ++ +|.+.++......++|.+++|++++++.+.+||+..|.+
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~~-------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW-QK-------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHHH-HH-------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3677888889989999998999988886543 21 356789999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++...+.++. +..++.. +|+++.-.+ .. ++..+..
T Consensus 164 ~~~~~~~~~~~-~~~~~~~---~~~~~~~~~------------------~~---------------------~~~~~~~- 199 (382)
T TIGR00902 164 LTAGLAFMLIG-FLIKPTI---PPKDAIPED------------------ES---------------------QGDSAFI- 199 (382)
T ss_pred HHHHHHHHHHH-HHcCCCC---CCCcccccc------------------cc---------------------ccchhHH-
Confidence 76653333322 2222211 111100000 00 0000000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCC---CCccchhH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPP---ASLTGFVT 269 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~---~~l~~in~ 269 (483)
+....|++. .+.+...+.+..+.+..+.....-++ . | .+. +.+..+..
T Consensus 200 ------------------~~l~~~~~~---~~l~~~~l~~~~~~~~~~~~~~~l~~--~--g----~s~~~~g~l~~~~~ 250 (382)
T TIGR00902 200 ------------------ALLKNPMNL---RFLAAVCLIQGAHAAYYGFSAIYWQA--A--G----ISASATGLLWGIGV 250 (382)
T ss_pred ------------------HHHcChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--C--C----CCHhHHHHHHHHHH
Confidence 000012221 12222233333344443333222121 1 2 222 33344455
Q ss_pred HHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHH
Q 041163 270 LSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLP 349 (483)
Q Consensus 270 ~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 349 (483)
+..++..++.+++ .+| .+..+-+.+|.++.++.+..+.+.+ +++++++
T Consensus 251 ~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 298 (382)
T TIGR00902 251 LAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWAIIGAIE---------------------AFPLIFL 298 (382)
T ss_pred HHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHHHHHhHh---------------------hHHHHHH
Confidence 5555555555444 444 3445557788888888887776654 6666666
Q ss_pred HHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHH-HHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHH
Q 041163 350 QFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM-TTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYY 428 (483)
Q Consensus 350 ~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (483)
.-++.++++.+..+....++.+. |++.+++.+|+++ +..++|..+|+.++|.+.+..+ ...
T Consensus 299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-----------------~~~ 360 (382)
T TIGR00902 299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-----------------AGT 360 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------HHH
Confidence 67999999999999999999998 9999999999986 5788999999999998886321 245
Q ss_pred HHHHHHHHHHHHH
Q 041163 429 YAFFAILNVLNFV 441 (483)
Q Consensus 429 f~~~~~l~lv~~l 441 (483)
|++++++++++.+
T Consensus 361 ~~~~~~~~~~~~~ 373 (382)
T TIGR00902 361 FVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-13 Score=136.76 Aligned_cols=268 Identities=11% Similarity=0.132 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+.+.+++.+++.|...|...+++.|+++++ +|.+++++++.+.++|.++++.+++.+.+.++|+..|++.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 5677888999999999999999999999999754 4678999999999999999999999998889999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..++.....++..+.+++++. ... .+ .....
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------~~~------------------~~---~~~~~ 212 (406)
T PRK11551 176 GVGPLLLVPLLMRWLPESRAFAQAAGA----------------------GKQ------------------RA---PVLRA 212 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhHHhccCc----------------------chh------------------hh---hhHHH
Confidence 876665554443322211000000000 000 00 00000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
. + + +.+.++........+.....++....+.+. +. + + .+.. .-..+.+..+..+..+
T Consensus 213 ~---------~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~--~--~g~s---~~~~~~~~~~~~~~~~ 269 (406)
T PRK11551 213 L---------F---G--EGRATATLLLWISYFFTLIVLYFLLNWLPS-LL-V--G--QGLS---RSQAGLVQIAFNIGGA 269 (406)
T ss_pred H---------h---h--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H--h--CCCC---hhhhhHHHHHHHHHHH
Confidence 0 0 0 001111111111112222222222222221 11 1 1 1111 0123344555556666
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+...+.+++.+++.+| +.+..+.+..+++++...... +.+++....++
T Consensus 270 ~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 317 (406)
T PRK11551 270 LGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAAP---------------------SFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhcC---------------------cHHHHHHHHHH
Confidence 6677777776554332 112234444444444333221 44455556677
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
.+++.....+..++++.+..|++.||+.+|+......+|..+|+.+.+.+.+
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 7888778888999999999999999999999999999999999999998875
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=133.50 Aligned_cols=262 Identities=10% Similarity=-0.001 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.+...|...++..|+.+ +|.++++...+..++|.++||++++++.+++||+..|++.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~ 164 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL 164 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 56777788898999999999998888887621 2456788888999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..+... ..+ +++|++++.++ . ++...++.
T Consensus 165 ~~~~~~~~~~~~-~~~---~~~~~~~~~~~-------------------~--------------------~~~~~~~~-- 199 (382)
T PRK11128 165 TAGVASMLLGQL-LRP---TIMPQGESRQQ-------------------E--------------------SAGWPAWK-- 199 (382)
T ss_pred HHHHHHHHHHHH-ccC---CCCCccccccc-------------------c--------------------ccccchHH--
Confidence 876555443332 222 11111110000 0 00000000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
+....|.++.++ +...+....+.+..+.+.....+ .+.. .-..+.+..++.+..+
T Consensus 200 -----------------~i~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~--~g~s---~~~~g~~~~~~~~~~~ 254 (382)
T PRK11128 200 -----------------ALLKEPTVWRFL---LCVSLLQGSHAAYYGFSAIYWQA--AGYS---ASTIGYLWSLGVVAEV 254 (382)
T ss_pred -----------------HHHcChhHHHHH---HHHHHHHHHhHhHHHHHHHHHHH--CCCC---HhHHHHHHHHHHHHHH
Confidence 001112222211 11222222222222222221111 1111 0112344556666666
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+...+.+++.+++ +..+.+.++.++.+++++.+...+ ++|+.++..++
T Consensus 255 ~~~~~~g~l~~r~-----------~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l 302 (382)
T PRK11128 255 LIFAFSNRLFRRW-----------SARDLLLLSAICGVVRWGLMGSTT---------------------ALPWLIVIQIL 302 (382)
T ss_pred HHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHhhh---------------------hHHHHHHHHHH
Confidence 6666666654332 334446677777777776665543 66677778899
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHH-HHHHHHHHHHhhhhhhcccc
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM-TTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~-l~~~iG~~lg~~l~~~~~~~ 406 (483)
.++++.+..+.....+.+. |++.++.++++.+ +..++|..+|+.++|.+.+.
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998887 5666799999886 66788889999999988863
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-13 Score=134.19 Aligned_cols=271 Identities=11% Similarity=0.053 Sum_probs=165.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.+++.+...|...+++.|+++++ +|.++++++..+.++|.++||++++++.+..||+..|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6788889999999999999999999999999864 4678999999999999999999999999989999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..+++.+..+..+.+-++ ++++++..+ ... . +..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------~~~--~-------------------~~~~~ 202 (365)
T TIGR00900 165 AVGFAISALLIVSVRIPELA-ASEIQALSN--------------------AVL--R-------------------DTREG 202 (365)
T ss_pred HHHHHHHHHHHHhcccccCC-Cccccccch--------------------hHH--H-------------------HHHhH
Confidence 88777665554433221100 000000000 000 0 00000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQIN-TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~-t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
.+ .....+.+.. +.+....+...+.... +.+.....+. .+.. ....+.+..+..+..
T Consensus 203 ~~---------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 260 (365)
T TIGR00900 203 IK---------------FVLKNPLLRT---LLLLALLFNLVFAPAIVALFPYVQSKY-LGRG---STHYGWVLAAFGLGA 260 (365)
T ss_pred HH---------------HHHcCcHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCc---hHHHHHHHHHHHHHH
Confidence 00 0000111111 1111222222221111 1111111110 1111 011233444555555
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
++..++.+++.++.. ..+-+..+.++.+++++...... + +.+..+...+
T Consensus 261 ~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~ 309 (365)
T TIGR00900 261 LLGALLLGLLGRYFK-----------RMALMTGAIFVIGLAILVVGLTP-------------------P-NFPLFLVLWF 309 (365)
T ss_pred HHHHHHHHHHHHHhc-----------hhHHHHHHHHHHHHHHHHHHhhc-------------------h-hHHHHHHHHH
Confidence 556666654432221 12234445556666655544432 1 2556667788
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+++.....+...+.+.+..|++.||..+|+++....+|..+++.+++.+.+
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987764
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=133.58 Aligned_cols=278 Identities=10% Similarity=0.080 Sum_probs=172.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+...+++++++.|+|.+...|...+.+.|.+|++ +|.++++++..+.++|.++||++++++.+.+||+..+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 36777889999999999999999999999998754 467899999999999999999999999888999887665
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
..+..++. +++.++ .++.+++++. . + +..
T Consensus 184 ~~~~~~~~---~~~~~~-~~~~~~~~~~-~------------------------------------------~---~~~- 212 (392)
T PRK12382 184 TMVLPLLA---WAFNGT-VRKVPAHAGE-R------------------------------------------P---SLW- 212 (392)
T ss_pred HHHHHHHH---HHHHHh-ccCCCCCccc-C------------------------------------------c---hHH-
Confidence 54432222 222111 1111110000 0 0 000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLA-MIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLS 271 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~-~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ 271 (483)
+..|...+ .+..++....+.......+ .+. + + .+.. ..+.......+.
T Consensus 213 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~--~--~~~~-----~~~~~~~~~~~~ 261 (392)
T PRK12382 213 --------------------SVVGLIWKPGLGLALQGVGFAVIGTFVS-LYF-A--S--KGWA-----MAGFTLTAFGGA 261 (392)
T ss_pred --------------------HHHHHHHHhHHHHHHHHHHHhHHHHHHH-HHH-H--h--cCCc-----hhHHHHHHHHHH
Confidence 00010000 0011111111111111111 111 1 1 1111 122233444555
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
.++..++.+++.+++.+| +.+.++..+.+++++...+.+ +.++..+..
T Consensus 262 ~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 309 (392)
T PRK12382 262 FVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLWLAP---------------------TAWVALAGA 309 (392)
T ss_pred HHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHHHcc---------------------cHHHHHHHH
Confidence 566667777776554332 224556667777766554432 445566677
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHH
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAF 431 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 431 (483)
++.++++....|...+.+.+..|++.||+.+|+++....+|+.+|+.+.+.+.+.. + +...|.+
T Consensus 310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g----------~~~~~~~ 373 (392)
T PRK12382 310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------G----------YPSVFLA 373 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------C----------chHHHHH
Confidence 88899999889998899999999999999999999999999999999999887532 1 2556777
Q ss_pred HHHHHHHHHHHHHHh
Q 041163 432 FAILNVLNFVFFLVV 446 (483)
Q Consensus 432 ~~~l~lv~~l~~~~~ 446 (483)
.+++.+++.++.+..
T Consensus 374 ~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 374 GAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777766665544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=139.33 Aligned_cols=268 Identities=13% Similarity=0.131 Sum_probs=171.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+.+.+++..++++++.+...|+-++++.+..|++ +..++.++.....|+.-++||.++|.+...+|-...|++
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999999999875 356788999999999999999999999888999999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++.++.+...++.. +++..+-.+..+-++..+ +++
T Consensus 175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~------------------------------------ryv- 214 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALREGL------------------------------------RYV- 214 (524)
T ss_pred HHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHH------------------------------------HHH-
Confidence 9998888766555443321 111111111111110000 000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHh-hcccCCCCCeeeCCCCccchhHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPASLTGFVTLS 271 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~-~~~~~~~~g~~i~~~~l~~in~~~ 271 (483)
.+.+.+...+. ...++.....-....++...+ .++. .+..+..+.+..
T Consensus 215 --------------------~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~~l~~--------~a~~yGll~a~~ 263 (524)
T PF05977_consen 215 --------------------RSSPPLRSVLL---RSFLFNLFASAVWALLPLFARDVLGG--------GASGYGLLLAAF 263 (524)
T ss_pred --------------------hcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHHHhCC--------cHHHHHHHHHHH
Confidence 00111111111 111111111111112222221 1111 122222222211
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
-.+-+.+.++.+..+++ .+..+-+..+.++.+++++.+++.+ +.|..++..
T Consensus 264 --gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~~---------------------~~~~~~~~l 314 (524)
T PF05977_consen 264 --GVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALSP---------------------SFWLALIAL 314 (524)
T ss_pred --HHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcch---------------------HHHHHHHHH
Confidence 12223344444444442 3334446677777777777766654 666777888
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
++.|++.........+.+.+.+|++++|+.++++.+....+..+|+.+.|.+.+.
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988864
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=133.27 Aligned_cols=284 Identities=13% Similarity=0.079 Sum_probs=162.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+...++++|++.|+|+|.. +...+..++++|++ +|.++.+++..+.++|.++++++++++.+.+|||..|++.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 6788999999999999964 55666668998853 4678999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..+++++..++ . |+..+ .. .. . . +. ..++.+.
T Consensus 151 ~~l~~~~~~~~~~~lp~---~-p~~~~-~~------------------~~--~-~-~~---------------~~~~~~l 188 (368)
T TIGR00903 151 AAVAAAGIILVLAALPA---L-PFQAA-EG------------------FG--F-K-DA---------------VKEFGAL 188 (368)
T ss_pred HHHHHHHHHHHHHHcCC---C-CCCCC-CC------------------cc--h-H-HH---------------HHHHHHH
Confidence 77766655544432221 1 11100 00 00 0 0 00 0000000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
..+++.+...+..++....++.+.+++++.+.. ... + ...+....+..+..+
T Consensus 189 ------------------l~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~--~g~----s----~~~~~~~~l~~~~g~ 240 (368)
T TIGR00903 189 ------------------AGRKDLWIIGAILGFGVALFDNLAIWLEAALRP--AGL----E----DIAGDAVALAILAGL 240 (368)
T ss_pred ------------------HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC----C----hHHHHHHHHHHHHHH
Confidence 011222222333444555566666666654421 111 1 111222222222222
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+. ..++.++..|| +++ ... +....++.++++....... +.++.+....+
T Consensus 241 ~g---~~~~~d~~~r~-~~r----~~~--~~~~~~~~a~~~~~~~~~~---------------------~~~~~~~~~~l 289 (368)
T TIGR00903 241 IG---VAVIPDRVARA-GLR----SIY--IRAAALLIAAFFLALAFEL---------------------NRLALFAFIGI 289 (368)
T ss_pred HH---HHHhhHHhhhh-hhH----HHH--HHHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHH
Confidence 22 23333333222 111 111 1112233333333322211 22333444445
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.++......+..+++..+..|++.||+.+|+.+....+|+..++.+.+.+.. +....|.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~f~~~~ 351 (368)
T TIGR00903 290 AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS------------------SAEAYFTFLA 351 (368)
T ss_pred HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc------------------CHHHHHHHHH
Confidence 5555556667788999999999999999999999999999999988876652 1245677777
Q ss_pred HHHHHHHHHH
Q 041163 434 ILNVLNFVFF 443 (483)
Q Consensus 434 ~l~lv~~l~~ 443 (483)
+..+++++..
T Consensus 352 ~~~~i~~~~~ 361 (368)
T TIGR00903 352 ILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHH
Confidence 7777666654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-12 Score=130.75 Aligned_cols=270 Identities=10% Similarity=0.022 Sum_probs=157.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.+...|...+.+.|.++++ +|.++.++.+...++|..+||.+++++.+..+|++.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 5667888999999999999999999999999764 3456778888888999999999999999889999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..+++.+..+...++.+++++++.+..+.. + .+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~------------------~~--- 208 (406)
T PRK15402 174 AALAALSFFGLWRAMPETAGRVGEKLSLKELG------------------------R------------------DY--- 208 (406)
T ss_pred HHHHHHHHHHHHHhCCCCCccccccccHHHHH------------------------H------------------HH---
Confidence 88877766544332221110000000000000 0 00
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHH-HHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIP-ILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~-l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
+ .....+.+..... .++....+. .+....+.+..+. .+.. . ...+++.....+..
T Consensus 209 -~---------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~----~g~~-~--~~~g~~~~~~~~~~ 264 (406)
T PRK15402 209 -K---------------LVLKNRRFVAGALALGLVSLPLL-AWIALSPVILISG----EQLS-S--YEYGLLQVPVFGAL 264 (406)
T ss_pred -H---------------HHHcCcHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHH----hCCC-H--HHHHHHHHHHHHHH
Confidence 0 0000111111111 111111111 1111111111111 1111 0 00112222222233
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
++..++.+++.++. +..+.+.+|.++.+++.....+.... ...+.+|++...+
T Consensus 265 ~~g~~~~g~l~~r~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~ 317 (406)
T PRK15402 265 IAGNLTLARLTSRR-----------PLRSLIRMGLWPMVAGLLLAALATVI----------------SSHAYLWLTAGLS 317 (406)
T ss_pred HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHHHHHHHHc----------------ccccHHHHHHHHH
Confidence 34445555543332 22334566777777777666554200 0125667788889
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
+.++|+....+..+...... +++.+|++.+++++...+|..+|+.+.+.+.+.
T Consensus 318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999888887777554 458899999999999999999999999888753
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=129.40 Aligned_cols=264 Identities=17% Similarity=0.205 Sum_probs=185.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.+++.+...|...+++.|.++++ +|.+.+++.+.+.++|..+++.+++.+.+..+|+..|.+.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5678889999999999999999999999999874 4678999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..+++.+...+..+ +.
T Consensus 160 ~~~~~~~~~~~~~~~~-------------~~------------------------------------------------- 177 (352)
T cd06174 160 AILGLLLALLLLFLLR-------------LL------------------------------------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------HH-------------------------------------------------
Confidence 9887777665443220 00
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
. . +.+.....+..+......+.....+. .+.. ....+.+..+..+..+
T Consensus 178 ---------------------~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~ 225 (352)
T cd06174 178 ---------------------L----L---LALAFFLLSFGYYGLLTYLPLYLQEV-LGLS---AAEAGLLLSLFGLGGI 225 (352)
T ss_pred ---------------------H----H---HHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHHHHH
Confidence 0 0 00001111111111111111110000 0101 0123455666777778
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+..++.+++.++..+|+ + .+.++.++..++.+.....+ +.++..+..++
T Consensus 226 i~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~ 274 (352)
T cd06174 226 LGALLGGLLSDRLGRRR-------L---LLLIGLLLAALGLLLLALAP---------------------SLALLLVALLL 274 (352)
T ss_pred HHHHHHHHHHHHHHhhh-------H---HHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHHH
Confidence 88888887766554331 1 46677777877777766543 45677788899
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.++++....+...+.+.+..|++.||..+|++.....+|+.+++.+.+.+.+.. ++...|.+.+
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~----------------~~~~~~~~~~ 338 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG----------------GYGGVFLILA 338 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------CcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999887421 1234566667
Q ss_pred HHHHHHHHHHH
Q 041163 434 ILNVLNFVFFL 444 (483)
Q Consensus 434 ~l~lv~~l~~~ 444 (483)
++.+++.+++.
T Consensus 339 ~~~~i~~i~~~ 349 (352)
T cd06174 339 ALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHhe
Confidence 77666665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=151.79 Aligned_cols=288 Identities=10% Similarity=-0.011 Sum_probs=165.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+.+.+++.++++|++++++.|...+++.|+++++ ++.++.+++.++.++|.++||+++|++....||+..|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 36788999999999999999999999999999975 467899999999999999999999999999999999855
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++++++.+...+. +..++..+......+-. .+
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------------------~~ 216 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRST------------------------------------------IT 216 (1140)
T ss_pred HHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHH------------------------------------------HH
Confidence 555444444433332221 10000000000000000 00
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
..+ .+...+.++.++ +....++.++....+.+.....+. .+.+ ....+++.+...+..
T Consensus 217 ~~~---------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~-~g~~---~~~~g~~~~~~~~g~ 274 (1140)
T PRK06814 217 LLK---------------YAKADKRIWLAI---LGISWFWLVGAVVLSQLPLLAKET-LGGD---ENVATLFLAVFSVGV 274 (1140)
T ss_pred HHH---------------HHhcCchHHHHH---HHHHHHHHHHHHHHHHhHHHHHHH-cCCc---hHHHHHHHHHHHHHH
Confidence 000 000011111111 112222222222222221111110 1111 011345566677777
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCc--cCCCCccchHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIV--EKGQQVPLTIFILLPQ 350 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~li~~ 350 (483)
++...+.+++..+..+ .+.+.+|.++.+++.+.+.+.-. .... ....+ -..-....+.|++++.
T Consensus 275 ~ig~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 340 (1140)
T PRK06814 275 AVGSFLASKLSEGRIT-----------LLYVPIGALLMGLFGLDLAFASS--SVPA-EPAQLKSILVFLSKRHGWRILID 340 (1140)
T ss_pred HHHHHHHHHHhCCcee-----------eeeehHHHHHHHHHHHHHHhccc--cccc-ccccccchhhhhcccccHHHHHH
Confidence 7777777766432221 11233344444443333222100 0000 00000 0000001255667778
Q ss_pred HHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 351 FVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 351 ~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+++.+++..+..+...+++.+.+|++.+|+++|++++...+|..+|+.+++.+..
T Consensus 341 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 341 LFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999988863
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-12 Score=128.11 Aligned_cols=287 Identities=13% Similarity=0.157 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+.+++.+.+...|...++..++.++++ | .+....++.+.+.++|.++||.+++++.+.+||++.|++.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG---R-EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc---h-hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 45666777788888888888988888888775432 1 1222367888899999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..++.++..++. |++++..+ .. . ++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~----~~~~~~~~------------------~~---------------------~---~~~~- 194 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSY----PRGAPGAL------------------TR---------------------L---EVRG- 194 (375)
T ss_pred HHHHHHHHHHHHHhCCCc----ccCccccc------------------Cc---------------------c---hhhh-
Confidence 988777666554433321 11110000 00 0 0000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
.+ ++ .+.+.+. ...++....+.......+ .+.....+.+. ...+.+..+..+..+
T Consensus 195 ---------~~---~~---~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~-------~~~g~~~~~~~~~~~ 249 (375)
T TIGR00899 195 ---------LL---AS---RDTRLLF--VACTLMWGCNILYIINMP-LLIIHELGLPD-------KLAGLMMGTAAGLEI 249 (375)
T ss_pred ---------hh---cC---cchHHHH--HHHHHHHHHHHHHHhhhH-HHHHHHcCCCH-------HHHHHHHHHHHHHHH
Confidence 00 00 0011111 111111111111111121 22111111110 011233344444445
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+..++.+++.+++.+| +-+.++.++..+.+......+ +.+..+...++
T Consensus 250 ~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 297 (375)
T TIGR00899 250 PFMLLAGYLIKRFGKR-----------RLMLLAALAGVAFYTGLAADN---------------------SLWALLMLQLL 297 (375)
T ss_pred HHHHhHHHHHHHhcch-----------hHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 5556666665544332 123344444444433322221 44445555677
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.+++.....+..+..+.+..|++ ++..+|+++....+|..+|+.+.+.+.+..+ +...|.+.+
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g----------------~~~~~~~~~ 360 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS----------------YHAVYWFAI 360 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------chhHHHHHH
Confidence 78888888888999999988876 5799999999999999999999998875321 245666667
Q ss_pred HHHHHHHHHHHH
Q 041163 434 ILNVLNFVFFLV 445 (483)
Q Consensus 434 ~l~lv~~l~~~~ 445 (483)
++.+++.+++..
T Consensus 361 ~~~~~~~~~~~~ 372 (375)
T TIGR00899 361 VMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHhe
Confidence 666666665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=134.59 Aligned_cols=268 Identities=14% Similarity=0.170 Sum_probs=161.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.+++.+...|...+++.|+++++ +|.+++++.+.+.++|.+++|.+++++.+.++|++.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 4458899999999999999999999999999985 3678999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..++.....+.-++++++.++.. . + +. . + . .+.+
T Consensus 158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~--------------------~-~----~~-~-------~---~---~~~~- 197 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPPPPRERESPKE--------------------S-E----SK-K-------P---K---PLKP- 197 (352)
T ss_dssp HHHHHHHHHHHHCCC---STTTT--SSTT--------------------T-T-------H-------H---H---CCCH-
T ss_pred cchhhhhhhhHhhhhhhcccccccccccc--------------------c-c----cc-c-------c---c---cccc-
Confidence 99988887754333321111100000000 0 0 00 0 0 0 0000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH-HhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQ-GTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~-~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
.+ +...+.+.++ .++.....+...+....+..... .+..+.+ + ....+.+..+..+..
T Consensus 198 ---------~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~~~~~~~~~ 256 (352)
T PF07690_consen 198 ---------GF-----KSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS-G---PSQAGLLFSIFGIVG 256 (352)
T ss_dssp ----------C-----THHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-T---HHHHHHHHHHHHHHH
T ss_pred ---------cc-----ccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhccCCC-H---HHHHHHHHHHHHHHH
Confidence 00 0111122111 11111222222222222222221 1111111 0 011223345556666
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
++..++.+++.+++.+ .++..+......++.+.+.+... ..+.+|.+...+
T Consensus 257 ~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 307 (352)
T PF07690_consen 257 IIGSLLAGRLSDRFGR-----------RRRLLIAILLLILGALGLLLLPF------------------SSSPVWLIIALF 307 (352)
T ss_dssp HHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHCCSHH------------------HCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHHH
Confidence 6667777777654322 22233333333333333333220 114566777788
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHh
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSS 397 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~ 397 (483)
+.+++..+..+...+.+.+..|++.+|+++|+.+...++|..+||
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 308 LIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999999999999999999999999999999999999999986
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=133.63 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+.+.+.+.+.+.|...+...|.++++ +|.+++++.+...|+|.++||.+++++.+ ++|+..|.+.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 3455566677777777788888999999998754 46789999999999999999999999875 7999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..+++++......++. +++++++..+ .+ +.
T Consensus 168 ~~~~~i~~i~~~~~~~~~--~~~~~~~~~~---------------------------------------------~~-~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRS--EKAIATETGS---------------------------------------------VW-SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccchhh---------------------------------------------hh-hh
Confidence 888777755443322211 1111000000 00 00
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
.+...+++.+...+..++....+........ .+..... +.+.. +...+.+..++.+..+
T Consensus 200 ---------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~--~~~~~---~~~~g~~~~~~~~~~~ 258 (395)
T PRK10054 200 ---------------SVLLQDKALLWFTCSGFLASFVSGAFASCIS-QYVMVVA--DSDFA---EKVVAVVLPVNAAMVV 258 (395)
T ss_pred ---------------hhhccCceehHHHHHHHHHHHHHHHhhhhHH-HHHHHhc--ccchH---HHHHHHHHHhhhhhee
Confidence 0000001111111111111111111111111 1211111 11111 0011234444555444
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
.+.+..+++. +| .+..+.+..|+++.++++....+.. .+++.+.+..++
T Consensus 259 ~~~~~~g~~~----~~-------~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 307 (395)
T PRK10054 259 SLQYSVGRRL----NA-------ANIRPLMTAGTLCFVIGLVGFIFSG--------------------NSLLLWGMSAAV 307 (395)
T ss_pred eehhHHHHHH----cc-------CCchhHHHHHHHHHHHHHHHHHHcc--------------------hHHHHHHHHHHH
Confidence 5555555543 33 1223445677777777776554421 134434556789
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
.++||....|...+.+.+.+|++++|.+.|... ...+|..+||.++|.+.+.
T Consensus 308 ~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 308 FTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred HHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998765 5668999999999988863
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-11 Score=127.52 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.|...|...+++.++++++ +|.+++++++.+.++|.++++.+++++.+.+||++.|++.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5667777888899999999999999999999864 4678999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 041163 114 TLGLAISIV 122 (483)
Q Consensus 114 ~v~~~i~li 122 (483)
++..++..+
T Consensus 184 ~i~~~~~~~ 192 (434)
T PRK11663 184 GIIAIVVGL 192 (434)
T ss_pred HHHHHHHHH
Confidence 876555443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-12 Score=130.61 Aligned_cols=319 Identities=12% Similarity=0.133 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc-ccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD-VGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~-~g~~~~F~i 112 (483)
+.+.+.+.|+++|+++|...|++..+.++|.|.+ +|.++.++.+.+..+|.+++.+++|+|.+. +||+..|++
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 4446789999999999999999999999999975 367899999999999999999999999988 999999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++..++++.... + .|++.+... ..|+-+++. +.......+
T Consensus 201 ~g~~g~i~~~~w~~~~~---d-~P~~h~~is-------------------~~El~~I~~------~k~~~~~~~------ 245 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYS---D-SPSKHPNIS-------------------EKELKYIEK------GKSEAHVKK------ 245 (466)
T ss_pred HHHHHHHHHHHHHHHhc---C-CcccCCCCC-------------------HHHHHHHHh------cccccccCC------
Confidence 99998888887766433 2 233333211 112212111 100000000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
....||+..- .+...+...+.-+.-...++...++++ +|..+..++|.. ..+++.+++.+..
T Consensus 246 ------~~~vP~~~i~----ts~~vwai~~~~f~~~~~~~~l~~y~P-tY~~~VL~f~v~-------~~G~~salP~l~~ 307 (466)
T KOG2532|consen 246 ------KPPVPYKAIL----TSPPVWAIWISAFGGNWGFYLLLTYLP-TYLKEVLGFDVR-------ETGFLSALPFLAM 307 (466)
T ss_pred ------CCCCCHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhCCChh-------hhhHHHHHHHHHH
Confidence 0012321000 001111111222223333333334444 333333333322 3577788899999
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
.+...+.+.+.|++.+| ... .+..+|+.-...+.+.+..+..+.- .+.+ .. |......
T Consensus 308 ~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~------------~~~~-----~~-~~a~~~l 365 (466)
T KOG2532|consen 308 AIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAF------------TSDE-----HR-LLAVILL 365 (466)
T ss_pred HHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeee------------cCCC-----cc-hHHHHHH
Confidence 99988999998887665 332 4556665555444444443333321 0000 11 1222122
Q ss_pred HHhHHHHHHhhhhHHHHHhh-cCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHH
Q 041163 353 LMGTADAFLEVAKIEFFYDQ-APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAF 431 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~-aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 431 (483)
..+++-......|...-... +|. +-|..||+.+...++..+++|.+++.+.+ .+ +..+| ...|++
T Consensus 366 ~~~~~~~g~~~~Gf~~~~~~~apq-~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW----------~~VF~i 431 (466)
T KOG2532|consen 366 TIAIGLSGFNISGFYKNHQDIAPQ-HAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW----------RIVFLI 431 (466)
T ss_pred HHHHHHcccchhhhHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH----------HHHHHH
Confidence 22233333333333333333 554 58999999999999999999999999985 21 12345 568999
Q ss_pred HHHHHHHHHHHHHHhh
Q 041163 432 FAILNVLNFVFFLVVA 447 (483)
Q Consensus 432 ~~~l~lv~~l~~~~~~ 447 (483)
.+++.+++.++|.+..
T Consensus 432 ~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 432 AAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHhchheeEee
Confidence 9999999998888875
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=129.07 Aligned_cols=87 Identities=14% Similarity=0.249 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhh---hhhhhcccccccc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTAL---VYIQDDVGWALGY 110 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~---~~L~~~~g~~~~F 110 (483)
+.+.+++++++.|+|.|...+...++++|+++++ +|.+++++++.+.++|.++++.++ +.+.+..+|++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 4567889999999999999999999999999865 467889999999999999999999 7777789999999
Q ss_pred hhhHHHHHHHHHHHHh
Q 041163 111 GLPTLGLAISIVIFLA 126 (483)
Q Consensus 111 ~i~~v~~~i~lii~~~ 126 (483)
++.++..++.++..++
T Consensus 200 ~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9977766665554444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-11 Score=126.03 Aligned_cols=283 Identities=13% Similarity=0.107 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhH
Q 041163 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPT 114 (483)
Q Consensus 35 ~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~ 114 (483)
.+.+++...+.+...+...|...++..|+.++++ | +.....++...+.++|.++||++++++.+++||+..|++.+
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~ 180 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTG---R-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc---c-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 3443333333333344667888888888765432 1 11233468889999999999999999998899999999998
Q ss_pred HHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHHh
Q 041163 115 LGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKA 194 (483)
Q Consensus 115 v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a 194 (483)
+..++..+..+...++-+++++.. + .. .+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------~~------------------~~--------- 209 (393)
T PRK15011 181 VAFIVCGVMVWLFLPSMRKELPLA-T-----------------------GT------------------LE--------- 209 (393)
T ss_pred HHHHHHHHHHHhhcCccCCCCccc-c-----------------------cc------------------cc---------
Confidence 876666555444333211100000 0 00 00
Q ss_pred hhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-hhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 195 AVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 195 ~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~-~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
.. + ++++.... .+......+..+.+..+...... +..+.+. ...+.+..+..+..+
T Consensus 210 -------~~----~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~-----~~~g~~~~~~~~~~i 266 (393)
T PRK15011 210 -------AP----R----RNRRDTLL---LFVICTLMWGTNSLYIINMPLFIINELHLPE-----KLAGVMMGTAAGLEI 266 (393)
T ss_pred -------cc----c----cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHH
Confidence 00 0 00111111 11111222233322222221111 1111110 012233344445555
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+..++.+++.+++.+| +.+..+.+...+.+..+...+ +.++.+...++
T Consensus 267 ~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~l 314 (393)
T PRK15011 267 PTMLIAGYFAKRLGKR-----------FLMRVAAVAGVCFYAGMLMAH---------------------SPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHH
Confidence 5667777777665443 123334444433333222221 33444445566
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
.+++..+..+.......+..|++ +|.++|+++....+|+.+|+.+++.+.+.. + +...|.+.+
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~------g----------~~~~~~~~~ 377 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIW------N----------YHAVFWFAL 377 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh------h----------hHHHHHHHH
Confidence 66666666677777888888865 999999999889999999999999887522 1 244555555
Q ss_pred HHHHHHHHHHH
Q 041163 434 ILNVLNFVFFL 444 (483)
Q Consensus 434 ~l~lv~~l~~~ 444 (483)
.+.+++.++++
T Consensus 378 ~~~~~~~~~~~ 388 (393)
T PRK15011 378 VMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=129.23 Aligned_cols=314 Identities=10% Similarity=0.006 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.++|.|...|...+++.|.+|++ +|.+++++.+.+.++|..+||.+++++.+..||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 5677888999999999999999999999999753 4567899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHH---HHH--HHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcch
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMA---KVI--VATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNL 188 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~---~v~--~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (483)
.....++.+......++.+..+++.+...... ..+ .....+... ...........-. .+ ..
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~--------~~ 236 (471)
T PRK10504 171 IPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKG-LGLSPLAIAGLVA-----VG--------VV 236 (471)
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCc-CCcchHHHHHHHH-----HH--------HH
Confidence 87766666655443332211111000000000 000 000110000 0000000000000 00 00
Q ss_pred hH-HHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccch
Q 041163 189 RF-FNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGF 267 (483)
Q Consensus 189 ~~-l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~i 267 (483)
.. ....++.... .+. .+ .+....|.+. ..+......+..+........+..+. ..+.. ....+.+...
T Consensus 237 ~~~~~~~~~~~~~-~~~--~~-~~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~g~~~~~ 305 (471)
T PRK10504 237 ALLLYLLHARNNN-RAL--FS-LKLFRTRTFS---LGLAGSFAGRIGSGMLPFMTPVFLQI-GLGFS---PFHAGLMMIP 305 (471)
T ss_pred HHHHHHHHHhcCC-CCc--cC-HHHhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC---HHHHHHHHHH
Confidence 00 0000000000 000 00 0001112211 12222222223222221111111110 11101 0011222333
Q ss_pred hHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHH
Q 041163 268 VTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIL 347 (483)
Q Consensus 268 n~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 347 (483)
..+..++..++.+++.+++.+ .+-+..|.++.+++.+++.+.. ...+.+++
T Consensus 306 ~~~~~~~~~~~~~~l~~r~g~-----------~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 356 (471)
T PRK10504 306 MVLGSMGMKRIVVQVVNRFGY-----------RRVLVATTLGLALVSLLFMLVA------------------LLGWYYLL 356 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCc-----------hHHHHHHHHHHHHHHHHHHhcc------------------ccccHHHH
Confidence 333344444666666544322 2234556666666655444321 00133334
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 348 LPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 348 i~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
....++.+++..+..+.....+.+..|++.+|..+|++++...+|+.+|+.+.+.+.+..
T Consensus 357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677889999999999999999999999999999999999999999999998876543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-12 Score=133.30 Aligned_cols=310 Identities=11% Similarity=0.061 Sum_probs=171.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.|+|.|+..|...+.+.+.+++++ +|.++++++....++|..+||++++++.+++||++.|++.
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~ 167 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN 167 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 67888999999999999999999888888875431 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHH---------HHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccC
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKV---------IVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGS 184 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v---------~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (483)
....++.+++.+...+.-.+++ .++ .+..+. +..++.+.... ......... ....+
T Consensus 168 ~~~~~~~~~l~~~~l~~~~~~~--~~~-~d~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-----~~~~~------ 232 (495)
T PRK14995 168 VPIVLVVMGLTARYVPRQAGRR--DQP-LNLGHALMLIVAILLLVYSAKTALKG-FLSLWVTSL-----TLLTG------ 232 (495)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--CCC-CChHhHHHHHHHHHHHHHHHHhcccc-CCchHHHHH-----HHHHH------
Confidence 8877776665544333211111 111 111111 11111110000 000000000 00000
Q ss_pred CcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCC
Q 041163 185 TQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLA-MIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS 263 (483)
Q Consensus 185 ~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~-~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~ 263 (483)
.....-....+.....|.. +.+ .-..|.+.. .+..++....++.. ....+.+.+.....+. ...+.
T Consensus 233 --~~~l~~f~~~e~~~~~p~~--~~~-lf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lq~v~g~s~-------~~ag~ 299 (495)
T PRK14995 233 --ALLLGLFIRTQLAASRPMI--DMR-LFTHRIILSGVVMAMTAMITLVGF-ELLMAQELQFVHGLSP-------LEAGM 299 (495)
T ss_pred --HHHHHHHHHHHhcCCCCCc--CHH-HhCCcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCH-------HHHHH
Confidence 0000000000000001100 000 000111111 11111111111111 1011111111111110 11233
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
+.....+...+..|+.+++.++..+| +-+..|+++.+++++.+.... ...+
T Consensus 300 ~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~~~~~~~l~~~~------------------~~~~ 350 (495)
T PRK14995 300 FMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALSALSFYGLAMTD------------------FSTQ 350 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHhc------------------CCCc
Confidence 44445566677778888776554322 234567777777776554432 0113
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
.++..+..++.++|..+..+.....+.+.+|++.+|..+|++++...+|+.+|+.+.+.+..
T Consensus 351 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 351 QWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999999999999999999999999999988887753
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=124.39 Aligned_cols=287 Identities=13% Similarity=0.114 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+.++|++.++.-|.+.+...++.+|..|++ ||.++.++.+.+..++-++|.+++.++.+.+|||..|++.
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 7899999999999999999999999999999986 5788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCC--CCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPT--GSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFF 191 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~--~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 191 (483)
++..++.++..+...+ ++++++ +.++.+..+ .+
T Consensus 174 a~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~-------------------------------------------~l 208 (394)
T COG2814 174 AVLALLALLLLWKLLP--PSEISGSLPGPLRTLLR-------------------------------------------LL 208 (394)
T ss_pred HHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHH-------------------------------------------Hh
Confidence 9988887776665444 111110 011000000 00
Q ss_pred HHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeee-CCCCccchhHH
Q 041163 192 NKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKI-PPASLTGFVTL 270 (483)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i-~~~~l~~in~~ 270 (483)
...+....++..++.....+..|.-..+.+ ++. . |+.. ..++...+..+
T Consensus 209 ---------------------~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L----~~v----~-g~s~~~vs~~Ll~~Gv 258 (394)
T COG2814 209 ---------------------RRPGVLLGLLATFLFMTGHFALYTYIRPFL----ESV----A-GFSVSAVSLVLLAFGI 258 (394)
T ss_pred ---------------------cCchHHHHHHHHHHHHcchhhhHHhHHHHH----HHc----c-CCCHhHHHHHHHHHHH
Confidence 001111122222233333334333222211 111 1 1111 12444555566
Q ss_pred HHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHH
Q 041163 271 SMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQ 350 (483)
Q Consensus 271 ~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 350 (483)
..++...+.+++.++ ++.+-+...+.+.++.++.+.+.. -+.+..+..
T Consensus 259 ~~~~Gn~~gGrl~dr------------~~~~~l~~~~~l~a~~~l~l~~~~--------------------~~~~~~~~~ 306 (394)
T COG2814 259 AGFIGNLLGGRLADR------------GPRRALIAALLLLALALLALTFTG--------------------ASPALALAL 306 (394)
T ss_pred HHHHHHHHHhhhccc------------cchhHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHH
Confidence 666666666666433 122334445566666666655442 255555666
Q ss_pred HHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHH
Q 041163 351 FVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYA 430 (483)
Q Consensus 351 ~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 430 (483)
.++++++-.......+....+.+ ++.++..++++....++|..+|..++|.+.+.. ++....+
T Consensus 307 ~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~----------------g~~~~~~ 369 (394)
T COG2814 307 LFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDAL----------------GYAATGW 369 (394)
T ss_pred HHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------chHHHHH
Confidence 66677666555444455455533 455889999999999999999999999888632 2345566
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 041163 431 FFAILNVLNFVFFLVVAKFY 450 (483)
Q Consensus 431 ~~~~l~lv~~l~~~~~~~~~ 450 (483)
..+.+.+++.++.+...++.
T Consensus 370 ~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 370 VGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 66666666666655555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-11 Score=125.31 Aligned_cols=284 Identities=12% Similarity=0.083 Sum_probs=165.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc-cccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV-GWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~-g~~~~F~i 112 (483)
+.+.+++++++.|+|.|...+...+++.+++++ +|.++.+++..+.++|..+|+.+++++.+++ +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 567788999999999999999999999999863 3567889999999999999999999988775 89988776
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++.+..++...++ +|++++..+ . +
T Consensus 169 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~---------------------~------- 197 (393)
T PRK09705 169 WALPAVVALFAWWWQSAR----EVASSHKTT-------------------T---------------------T------- 197 (393)
T ss_pred HHHHHHHHHHHHHHHhcC----CCccccCCC-------------------c---------------------C-------
Confidence 665544444433332211 111100000 0 0
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
+. +...+++.+...+..++....++....+.++.+ .+ ...+. ...+.+..+..+..
T Consensus 198 ----------~~-----~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l-~~-~g~s~-------~~ag~~~~~~~i~~ 253 (393)
T PRK09705 198 ----------PV-----RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFY-IE-IGASA-------QYSGSLLALMTLGQ 253 (393)
T ss_pred ----------Cc-----ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCh-------hhhhHHHHHHHHHH
Confidence 00 000001111111112222223333333333222 11 11110 11334555666666
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
++..++.+++.++.. ..+.+..|+.+.++++..+.... .+..+.. .+
T Consensus 254 i~g~~~~g~l~~r~~-----------~~~~~~~~~~l~~~~~~~~~~~~--------------------~~~~~~~--~~ 300 (393)
T PRK09705 254 AAGALLMPAMARHQD-----------RRKLLMLALVLQLVGFCGFIWLP--------------------LQLPVLW--AM 300 (393)
T ss_pred HHHHHHHHHHHhhcc-----------chHHHHHHHHHHHHHHHHHHHcc--------------------chHHHHH--HH
Confidence 666666665533321 12234556666666665443321 0111221 24
Q ss_pred HHhHHHHHHhhhhHHHHHhhcC-cchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHH
Q 041163 353 LMGTADAFLEVAKIEFFYDQAP-ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAF 431 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP-~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 431 (483)
+.+++.....|.....+.+..| ++.+|..+|+.+....++..+||.+.+.+.+..+ .+...|.+
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---------------~~~~~~~~ 365 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---------------NYLMDWAF 365 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchHHHHH
Confidence 4577777777888777777775 6789999999999999999999999999886442 12445666
Q ss_pred HHHHHHHHHHHHHHhh
Q 041163 432 FAILNVLNFVFFLVVA 447 (483)
Q Consensus 432 ~~~l~lv~~l~~~~~~ 447 (483)
.+..+++..++.++..
T Consensus 366 ~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 366 HALCVVGLMIITLRFA 381 (393)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666665555554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=126.70 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh--------hccc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ--------DDVG 105 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~--------~~~g 105 (483)
....++++|++.|++.|+..|...++++|++|++ +|.++.+++..+..+|.++++++++.+. +.+|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 4677889999999999999999999999999964 4678899999999999999988776543 4579
Q ss_pred ccccchhhHHHHHHHHHHHHh
Q 041163 106 WALGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 106 ~~~~F~i~~v~~~i~lii~~~ 126 (483)
||+.|++.++..++.++..++
T Consensus 193 Wr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 999999988877766554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-11 Score=128.30 Aligned_cols=295 Identities=12% Similarity=0.086 Sum_probs=170.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh-cccccccch
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQD-DVGWALGYG 111 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~-~~g~~~~F~ 111 (483)
.+.+.+++.+++.+++.+...+...++..|+++++ +|.++.++...+.++|.++++.+++++.+ ..||+..|+
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 35677788888999999999999999999999854 35678889999999999999999999988 479999999
Q ss_pred hhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHH
Q 041163 112 LPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFF 191 (483)
Q Consensus 112 i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 191 (483)
+.++..++..+..+..++..+ .+++++...+ . .. ..+.
T Consensus 179 i~a~l~ll~~l~~~~~~e~~~-~~~~~~~~~~--~-~~--------------------------------------~~l~ 216 (491)
T PRK11010 179 LMAALLIPCIIATLLAPEPTD-TIPVPKTLEQ--A-VV--------------------------------------APLR 216 (491)
T ss_pred HHHHHHHHHHHHHHhcCCCcc-ccccccchhh--h-HH--------------------------------------HHHH
Confidence 999877776555444322110 0000000000 0 00 0000
Q ss_pred HHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCC---Ccc-ch
Q 041163 192 NKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPA---SLT-GF 267 (483)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~---~l~-~i 267 (483)
+. ..+++....++..++........+.... .+..+. . + ++.. .+. .+
T Consensus 217 ~~------------------~~~~~~~~~ll~~~l~~~~~~~~~~~~~-~~l~~~----~--G----~s~~~~g~~~~~~ 267 (491)
T PRK11010 217 DF------------------FGRNNAWLILLLIVLYKLGDAFAMSLTT-TFLIRG----V--G----FDAGEVGLVNKTL 267 (491)
T ss_pred HH------------------HcCcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh----c--C----CCHHHHHHHHHHH
Confidence 00 0001111111111111122222222222 222211 1 1 1222 222 23
Q ss_pred hHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHH
Q 041163 268 VTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIL 347 (483)
Q Consensus 268 n~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 347 (483)
..+..++..++.+++.+++.+| +.+.++.++.+++.+....... ...+.+++
T Consensus 268 g~i~~iiG~ll~G~L~dr~g~~-----------~~l~i~~~l~~l~~l~~~~l~~-----------------~~~~~~~l 319 (491)
T PRK11010 268 GLLATIVGALYGGILMQRLSLF-----------RALMIFGILQGVSNAGYWLLSI-----------------TDKNLYSM 319 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHh-----------------ccccHHHH
Confidence 3345556666667776555432 1123333333333322221110 00133444
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHH
Q 041163 348 LPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDY 427 (483)
Q Consensus 348 i~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (483)
....++..+...+..+...+...+.+|++..++.+|+.+...++|..+++.+.|.+.+..+ +..
T Consensus 320 ~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G----------------~~~ 383 (491)
T PRK11010 320 GAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG----------------WPT 383 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------hHH
Confidence 4555665666666678889999999999999999999999999999988888888775321 356
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 041163 428 YYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 428 ~f~~~~~l~lv~~l~~~~~~~ 448 (483)
.|.+.+++++.+.+....+.+
T Consensus 384 ~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777666666543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-11 Score=122.71 Aligned_cols=85 Identities=7% Similarity=0.069 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+.+.+++.+++.|++.|...|...+++.|+++++ +|.++.+++..+.++|.++||++++++.+.+||++.|++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 36788999999999999999999999999999754 467899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 041163 113 PTLGLAISIVI 123 (483)
Q Consensus 113 ~~v~~~i~lii 123 (483)
.++..++.++.
T Consensus 180 ~~~l~~~~~l~ 190 (394)
T PRK10213 180 AAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHHH
Confidence 88766554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-11 Score=120.19 Aligned_cols=87 Identities=9% Similarity=0.111 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.+...+...+++.|++|++ +|.+++++++...++|..+++.+++++.+.++|+..|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5677888999999999999999999999999854 4678999999999999999999999999889999999998
Q ss_pred HHHHHHHHHHHHh
Q 041163 114 TLGLAISIVIFLA 126 (483)
Q Consensus 114 ~v~~~i~lii~~~ 126 (483)
++..++..+..+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (385)
T TIGR00710 166 SLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776665544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-12 Score=125.83 Aligned_cols=268 Identities=12% Similarity=0.026 Sum_probs=157.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+.+.+++++++.++|.|...+.....+.+++++ +|.++.+++..+.++|.++++.+.+.+.+.+||++.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 3677888999999999998888888888888864 356788999999999998877777777778899999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++..+..+...+. ++++..+ ++ ... .++..++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~-~~------------------~~~-------------------~~~~~~~~~ 200 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGY---PPGQLIK-TN------------------IEV-------------------SVKDYTVWE 200 (377)
T ss_pred HHHHHHHHHHHHHHheec---Cchhccc-cC------------------ccc-------------------chhhhhHHH
Confidence 988777766554432221 1110000 00 000 000000000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
...++ ........+ ......+....+.+....++ .+.. .-..+.+.++..+..
T Consensus 201 ------------------~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~ 253 (377)
T TIGR00890 201 ------------------MLRTP-QFWVLYLSF---FLNAVSGLLLIGLYKPYGQS--LGLS---DGFLVLAVSISSIFN 253 (377)
T ss_pred ------------------HHcCc-cHHHHHHHH---HHHhHHHHHHHHHHHHHHHH--cCCC---HHHHHHHHHHHHHHH
Confidence 00001 111111111 11111111111111111111 1111 001234556667777
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
++..++.+++.+++.+| +.+.++.++.+++.+.....+ ..+.+.++...+
T Consensus 254 ~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 303 (377)
T TIGR00890 254 GGGRPFLGALSDKIGRQ-----------KTMSIVFGISAVGMAAMLFIP-------------------MLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHcc-------------------cchhHHHHHHHH
Confidence 77788888887665443 124456666666665544432 012222333345
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+++.....+...+.+.+..|++.||+.+|+++....+|+.+++.+.+.+.+
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666656666777889999999999999999999999999999999998875
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-11 Score=122.45 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh--------hccc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ--------DDVG 105 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~--------~~~g 105 (483)
+...+.+.|++.|+|.|+..|...++++|++|++ +|.++.++.+.+.+.|.++++++.+.+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 3557889999999999999999999999999875 3567888899999999999988776654 2689
Q ss_pred ccccchhhHHHHHHH
Q 041163 106 WALGYGLPTLGLAIS 120 (483)
Q Consensus 106 ~~~~F~i~~v~~~i~ 120 (483)
||..|++.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999877765444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=129.82 Aligned_cols=311 Identities=14% Similarity=0.075 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+.+++++.|+|.|...|...+++.|++|++ +|.+++++++.+.++|..+||.+++++.+++||++.|++.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 5778899999999999999999999999999853 4678999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHH---------HHHHHhCCcCCCCCcc-hhhhhhhHHHhhcCccccc
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVI---------VATIRKWNVPLPTDPR-ELYELDLEAYAQKGKYMIG 183 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~---------~~a~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~ 183 (483)
++..++.+++.++..++. +++.....+..... .....+.. ....... .....- ..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~----- 228 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRD---KPAASENFDFLGLLLLSVGLGSLLYGLSEGP-ERGWFDSNEILILS-----ITG----- 228 (485)
T ss_pred hHHHHHHHHHHHHHcCCc---cccccCCCcHHHHHHHHHHHHHHHHHHhhCC-CCCCCCchHHHHHH-----HHH-----
Confidence 887776665544433321 11111111111111 11111100 0000000 000000 000
Q ss_pred CCcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCC
Q 041163 184 STQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS 263 (483)
Q Consensus 184 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~ 263 (483)
..........+.....+. .+.+.-..+.+ ....+........+......+.....+. .+.. ....+.
T Consensus 229 ---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~g~s---~~~~g~ 295 (485)
T TIGR00711 229 ---LVAIIAFVVWELTDDNPL---VDLRLFKYRNF---TIGCVYMSLLGLGLYGSFYLLPLYLQQV-LGYT---ALQAGL 295 (485)
T ss_pred ---HHHHHHHHHHHHcCCCCc---cCHHHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC---HHHHHH
Confidence 000000000000000010 00000001111 1111111222222222111221111110 1111 011244
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
+.....+..++..|+.+++.++..+ .+.+.+|..+.+++..++.+.- ....+
T Consensus 296 ~~~~~~~~~~~~~~~~g~l~~r~~~-----------~~~~~~g~~~~~~~~~~~~~~~-----------------~~~~~ 347 (485)
T TIGR00711 296 HILPVGLAPMLSSPIAGRMGDKIDP-----------RKLVTIGLILYAVGFYWRAFTF-----------------TPDTP 347 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc-----------HHHHHHHHHHHHHHHHHHhccC-----------------CCCCC
Confidence 5566667777788888777544332 2335667777777766654211 00124
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
.++.+...++.++|..+..+.....+.+..|++.+|.++|+++....+|+.+|+.+.+.+.+
T Consensus 348 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 348 FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667889999999988888888899999999999999999999999999999887764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-11 Score=120.78 Aligned_cols=294 Identities=10% Similarity=0.116 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.|...|...+++.|++|++ +|.++++++..+.++|..+++.+++++.+.+||+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 5667888999999999999999999999999753 4678999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..++.+...++..+...++++ .+..+.......... . .... ..++ ...+...+-+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~---~~~~--~~~~-----------~~~~~~~~~~- 238 (398)
T TIGR00895 178 GIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAIAPQMQ-A---EAQS--ALPE-----------QKATQGTKRS- 238 (398)
T ss_pred hhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHHHHHHhcc-c---cccc--cccc-----------cccccchhhH-
Confidence 765555544433322211100000000 000011000000000 0 0000 0000 0000000000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
.+ +...+.+.......+++........+.-..+.+.....+. +.. ....+.+..+..+..+
T Consensus 239 ---------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~~ 299 (398)
T TIGR00895 239 ---------VF-----KALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL--GFS---LSLAATGGALFNFGGV 299 (398)
T ss_pred ---------HH-----HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHHHHHHHH
Confidence 00 0000000111111111111111111111111111111111 111 0112334455555566
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+..++.+++.+++.+ . ++..+..+.++...+..... .+.++.....++
T Consensus 300 ~~~~~~~~l~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 347 (398)
T TIGR00895 300 IGSIIFGWLADRLGP-----------R-VTALLLLLGAVFAVLVGSTL--------------------FSPTLLLLLGAI 347 (398)
T ss_pred HHHHHHHHHHhhcch-----------H-HHHHHHHHHHHHHHHHHHHh--------------------hCHHHHHHHHHH
Confidence 666666666543321 1 33444444333333322211 134455666788
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTV 403 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~ 403 (483)
.+++.....+...+.+.+..|++.||..+|+......+|..+||.++|.+
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 89999999999999999999999999999999999999999999998754
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=122.10 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH-HHHhhhhhhhhhcccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGT-LLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~-~ig~~l~~~L~~~~g~~~~F~i 112 (483)
+.+.+++.+++.+++.|...|...+.+.++++++ +|.+++++++.+.++|. +++|+++..+....||++.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 4567788889999999999999899999999764 46789999999999997 4566654444444699999999
Q ss_pred hHHHHHHHHHHH
Q 041163 113 PTLGLAISIVIF 124 (483)
Q Consensus 113 ~~v~~~i~lii~ 124 (483)
.++..++..++.
T Consensus 193 ~~~~~~~~~~l~ 204 (452)
T PRK11273 193 PAFAAILVALFA 204 (452)
T ss_pred HHHHHHHHHHHH
Confidence 888766654443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.9e-11 Score=125.38 Aligned_cols=88 Identities=14% Similarity=0.054 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc---ccccc
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV---GWALG 109 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~---g~~~~ 109 (483)
.+.+.+++.+++.|+++|...|...++++|++|++ +|.++++++..+.++|.++++++..++.+.+ +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 36788899999999999999999999999999975 3677888999999999999999988776643 68888
Q ss_pred chhhHHHHHHHHHHHHh
Q 041163 110 YGLPTLGLAISIVIFLA 126 (483)
Q Consensus 110 F~i~~v~~~i~lii~~~ 126 (483)
|.+.++..++..++.++
T Consensus 194 f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 194 FIFPSIIALIIGFIGLR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888776655444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-10 Score=121.61 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.|+|.|...+...+++.|+++++ +|.++.+++..+.++|.++++.+.+.+.+.+||++.|++.
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 5778899999999999999999999999999864 4677889999999999999999999998889999999886
Q ss_pred HHH
Q 041163 114 TLG 116 (483)
Q Consensus 114 ~v~ 116 (483)
++.
T Consensus 179 ~~~ 181 (426)
T PRK12307 179 LLP 181 (426)
T ss_pred HHH
Confidence 544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=120.88 Aligned_cols=310 Identities=14% Similarity=0.153 Sum_probs=179.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhh--hhhhhcccccccch
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTAL--VYIQDDVGWALGYG 111 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~--~~L~~~~g~~~~F~ 111 (483)
+.+.+.+-.++.|+..|.-.|.....++.||+++ +|.+..+++..+-|+|+.+.|+++ +++..+++|+.+|+
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 7888899999999999999999999999999975 468899999999999999999999 99998899999999
Q ss_pred hhHHHHHH-HHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhH
Q 041163 112 LPTLGLAI-SIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRF 190 (483)
Q Consensus 112 i~~v~~~i-~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (483)
+++++.++ +++.++..+.+ |+..-+.++.+ ..++..+.+ ++ +. ++++ .+.
T Consensus 190 ~pgiiaiival~~~~~~rd~-----Pqs~GLP~ie~------------~~~d~~e~~--~~-~~--------~~~~-ls~ 240 (448)
T COG2271 190 FPGIIAIIVALILLFLLRDR-----PQSEGLPPIEE------------YRGDPLEIY--EE-EK--------ENEG-LTA 240 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----ccccCCCCHHH------------hhcCchhhh--hh-hc--------cCCC-ccH
Confidence 99987554 44445554432 33221111100 000111110 00 00 0000 000
Q ss_pred HHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhh------hcchhHHHHHHhhcccCCCCCeeeCCCCc
Q 041163 191 FNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTML------AQINTLFVKQGTTLDRAIGSSFKIPPASL 264 (483)
Q Consensus 191 l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y------~q~~t~~~~~~~~~~~~~~~g~~i~~~~l 264 (483)
|+. -.+-.++.=.++.....+..+| ++..+.|..+..+.+. ..+.+.
T Consensus 241 -------------~~i-------~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~-------~~a~~a 293 (448)
T COG2271 241 -------------WQI-------FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSL-------VKANWA 293 (448)
T ss_pred -------------HHH-------HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCH-------HHHHHH
Confidence 000 0111111111222222222232 3333355555443332 123444
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLV-IHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
.++--...+....+.+++.|++.+.+ | .+. ++.+. ...++.+.+.... ..|
T Consensus 294 ~~lfE~agl~G~Ll~GwlSDklfkgr--R-----~p~--~~i~~~~i~~~~~~~w~~~-------------------~~~ 345 (448)
T COG2271 294 ISLFEVAGLPGTLLAGWLSDKLFKGR--R-----GPM--ALIFMLLITASLVLYWLAP-------------------NGS 345 (448)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc--c-----chH--HHHHHHHHHHHHHHHHcCC-------------------Ccc
Confidence 45555566667777888888876432 1 111 11111 1122222222111 113
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhH--HHHHhhcCcchhhHHHHHHHHHHHH-HHHHHhhhhhhcccccccCCccccccCCC
Q 041163 344 IFILLPQFVLMGTADAFLEVAKI--EFFYDQAPESMKSLGTSYSMTTLGV-GNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~--a~i~~~aP~~~~g~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
.+ +...++..+|.....|..+ -.+.+.+|++..|++.|+-.++.-+ |..++....+.+.+.. +|
T Consensus 346 ~~--l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~------gW----- 412 (448)
T COG2271 346 YL--LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW------GW----- 412 (448)
T ss_pred HH--HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC------CC-----
Confidence 33 2233455566656656533 3567889999999999999999998 9999988888887642 46
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYV 451 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~ 451 (483)
+..|.++.+.++++.++++.+.+.-+
T Consensus 413 -----~g~Fi~~~~~a~l~~lll~~~~~~~~ 438 (448)
T COG2271 413 -----DGGFIVLSIAALLAILLLLPVWNAEE 438 (448)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566667777777777776665433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-10 Score=118.71 Aligned_cols=262 Identities=15% Similarity=0.138 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhHHHHH
Q 041163 39 FAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLA 118 (483)
Q Consensus 39 ~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v~~~ 118 (483)
++.+++.|++.|++.|...+++.|++|++ +|.++.+++....++|.++||.++|++.+ +.|+..|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALAD-PHAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 57788999999999999999999999864 46789999999999999999999999987 457777777766555
Q ss_pred HHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHHhhhhc
Q 041163 119 ISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAAVKT 198 (483)
Q Consensus 119 i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 198 (483)
++.+.....++. +.++++ .+. +..+.. + .+.+..+
T Consensus 165 ~~~~~~~~l~~~-~~~~~~-~~~-~~~~~~----~-----------------------------------~~~~~~~--- 199 (393)
T PRK11195 165 LAALFNLFIPRL-GARRPG-QSW-NPIALL----R-----------------------------------DFFHACR--- 199 (393)
T ss_pred HHHHHHhcCCCC-cccccc-cCC-CHHHHH----H-----------------------------------HHHHHHH---
Confidence 444433332221 111000 000 000000 0 0000000
Q ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHHHHHHH
Q 041163 199 GSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLVCVVL 278 (483)
Q Consensus 199 ~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~iii~~pl 278 (483)
.+...+.+.. .+.....+|.........+.....+ ..+.+ ....+.+.....+..++..++
T Consensus 200 ------------~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~lg~s---~~~~G~~~~~~~~g~i~g~~~ 260 (393)
T PRK11195 200 ------------VLWRDKLGRF---SLAGTTLFWGAGATLRFLVLAWAPV-ALGIT---LNQPAYLQAVVAIGIAVGAGA 260 (393)
T ss_pred ------------HHHhCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC---hhHHHHHHHHHHHHHHHHHHH
Confidence 0000011111 1111122233332222111111000 01111 011233445555555666666
Q ss_pred HhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHH
Q 041163 279 YDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTAD 358 (483)
Q Consensus 279 ~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE 358 (483)
.+++. +|. +..+.+..|+ +.++........+ ++++.+...++.+++.
T Consensus 261 ~~~l~----~~~-------~~~~~~~~g~-~~~~~~~~~~~~~---------------------~~~~~~~~~~~~G~~~ 307 (393)
T PRK11195 261 AARLV----TLE-------TVLRVLPAGI-LMGLVVLLMALQH---------------------SLLPAYPLLILIGALG 307 (393)
T ss_pred HHHHh----cCC-------cccchHHHHH-HHHHHHHHHHHHh---------------------HHHHHHHHHHHHHHhh
Confidence 65543 221 1222344454 3333332222221 4556667777889999
Q ss_pred HHHhhhhHHHHHhhcCcch-hhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 359 AFLEVAKIEFFYDQAPESM-KSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 359 ~l~~p~~~a~i~~~aP~~~-~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
.+..+...+.+.+..|++. +|..+|+.++...+|..++..+.+.+.
T Consensus 308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9988999999998877765 799999999999999999999988775
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-10 Score=116.22 Aligned_cols=87 Identities=8% Similarity=0.110 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.+...+...+++.|+++++ +|.+++++.+.+.++|..++|++++++.+..+|+..|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 4567788899999999999999999999999754 4678999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHh
Q 041163 114 TLGLAISIVIFLA 126 (483)
Q Consensus 114 ~v~~~i~lii~~~ 126 (483)
++..++..+...+
T Consensus 152 ~~~~~~~~~~~~~ 164 (377)
T PRK11102 152 ALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-11 Score=119.55 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc--------
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG-------- 105 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g-------- 105 (483)
+.+.++...++.+++.+...|...+++.|++|++ +|.++.++...+.++|.++++.+++++....|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4455566666778888888999999999999754 46789999999999999999999999988888
Q ss_pred ccccchhhHHHHHHHHHHHHh
Q 041163 106 WALGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 106 ~~~~F~i~~v~~~i~lii~~~ 126 (483)
|+..|++.++..++..++.++
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987776655444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=118.21 Aligned_cols=270 Identities=11% Similarity=0.062 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh--------hccccc
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ--------DDVGWA 107 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~--------~~~g~~ 107 (483)
..+++++++.|+|.|...+...+++.|+++++ +|....++.+.+.++|.++++++.+.+. +.++|+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 45788899999999999999999999999865 4577889999999999999999887664 357999
Q ss_pred ccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcc
Q 041163 108 LGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQN 187 (483)
Q Consensus 108 ~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (483)
+.|++.++..+++..+.....+. |+..+ . +++ . +. ...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~----------~~~-~----~~-------------------~~~-- 208 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYLRRNLEET-----PVFEK-A----------QEK-H----KK-------------------KRG-- 208 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-----hhHHH-H----------Hhc-c----cc-------------------ccC--
Confidence 99998877666554433222111 10000 0 000 0 00 000
Q ss_pred hhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccch
Q 041163 188 LRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGF 267 (483)
Q Consensus 188 ~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~i 267 (483)
.+.+ .....++.+. .........+..+....+.+.....+ +.+.. ....+.+..+
T Consensus 209 -~~~~-----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~~~~~~~ 263 (394)
T TIGR00883 209 -PIRE-----------------TLTKHRKPFL---LGLGLVIATTTTFYLITTYLPTYLTQ-TLGLS---ANSALLVLML 263 (394)
T ss_pred -CHHH-----------------HHHhchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC---hhHHHHHHHH
Confidence 0000 0000011111 11111112122222222222221111 01111 0012233445
Q ss_pred hHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHH
Q 041163 268 VTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIL 347 (483)
Q Consensus 268 n~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 347 (483)
..+..++..++.+++.+++.+| +.. +..+.+...+++....... ...+.+..
T Consensus 264 ~~~~~~~~~~~~g~l~dr~g~~--------~~~--~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 315 (394)
T TIGR00883 264 SLILFFITIPLSGALSDRIGRR--------PVL--IIFTVLAALLAVPLLMALL------------------DSGSFTLF 315 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhchH--------HHH--HHHHHHHHHHHHHHHHHHh------------------cCCchHHH
Confidence 5566667777777776555432 111 1122222222222221111 01134445
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHH-HHHHHHHHHHHHhhhhhhcccc
Q 041163 348 LPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 348 i~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~-~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
+...++.+++.....+...+.+.+..|++.|++++|+ +.+...+|..++|.+.+.+.+.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence 5566777888888889999999999999999999998 5566778999999999888764
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-10 Score=117.47 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh--------hccccc
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ--------DDVGWA 107 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~--------~~~g~~ 107 (483)
..+.+.|++.|+|.|+..|...+++.|++|++ +|....+....+.++|.+++..+..++. +.+|||
T Consensus 126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 36788999999999999999999999999875 3566778888889999988887777664 258999
Q ss_pred ccchhhHHHHHH
Q 041163 108 LGYGLPTLGLAI 119 (483)
Q Consensus 108 ~~F~i~~v~~~i 119 (483)
..|++.++..++
T Consensus 200 ~~f~~~~~~~l~ 211 (438)
T PRK09952 200 IPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHH
Confidence 999988776433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-10 Score=119.35 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh--------hcccccc
Q 041163 37 AFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ--------DDVGWAL 108 (483)
Q Consensus 37 ~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~--------~~~g~~~ 108 (483)
.+.+.|++.|+|.|+..|...++++|++|++ +|.++.++...+.++|.++|+.+..++. .++|||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 5789999999999999999999999999875 3566778888888888888887665543 2689999
Q ss_pred cchhhHHHHHH
Q 041163 109 GYGLPTLGLAI 119 (483)
Q Consensus 109 ~F~i~~v~~~i 119 (483)
.|++.++..++
T Consensus 194 ~f~i~~~~~l~ 204 (490)
T PRK10642 194 PFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHH
Confidence 99997665443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-10 Score=117.77 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.|+|.+...+...+++.|+++++ ++.+.++......++|..++|.+++++.+.+||+..|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 5677788899999999888888889999999864 3567888888899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 041163 114 TLGLAISIVIFLA 126 (483)
Q Consensus 114 ~v~~~i~lii~~~ 126 (483)
++..++..+..+.
T Consensus 167 ~~~~~~~~~~~~~ 179 (401)
T PRK11043 167 FAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766555444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=124.69 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=100.2
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+.+++.+...+..++.+++.+++.+| +.+.++.++.+++++...+.+
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~~-------------------- 313 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFAT-------------------- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhcc--------------------
Confidence 4556667777777788888876665443 225666777777776665543
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHH-HHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
++++++...++.+++.....+...+++.+..|++.+++..+. ++....+|..+++.+.|.+.+..+
T Consensus 314 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G------------ 380 (420)
T PRK09528 314 -GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG------------ 380 (420)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC------------
Confidence 566777778888988888888888999999999999987665 677888999999999988875321
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
+...|.+++++.++..++.+...+
T Consensus 381 ----~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 381 ----FQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHhc
Confidence 245677777777666665555433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-10 Score=117.98 Aligned_cols=86 Identities=8% Similarity=-0.005 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.|++.|...|...+++.|+++++ +|.++++++..+.++|..+++.+++++.+.+||++.|.+.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 6788899999999999998898889999998754 3567889999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHH
Q 041163 114 TLGLAISIVIFL 125 (483)
Q Consensus 114 ~v~~~i~lii~~ 125 (483)
++..++..+..+
T Consensus 164 ~~~~~~~~~~~~ 175 (382)
T PRK10091 164 AVFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHHHHH
Confidence 887666554433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-10 Score=123.33 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc----------
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD---------- 103 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~---------- 103 (483)
+.+.+++++++.|+|.|+..|...+++++.+|++ +|...++++.++..+|.++++.++..+...
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 5778899999999999999999999999999864 467788899999999999999887666543
Q ss_pred ---ccccccchhhHHHHHHHHHHHHhc
Q 041163 104 ---VGWALGYGLPTLGLAISIVIFLAG 127 (483)
Q Consensus 104 ---~g~~~~F~i~~v~~~i~lii~~~~ 127 (483)
.+|++.|++.++..++.++.+++.
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 357888888877766665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-10 Score=118.91 Aligned_cols=269 Identities=16% Similarity=0.149 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh-------hccccc
Q 041163 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ-------DDVGWA 107 (483)
Q Consensus 35 ~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~-------~~~g~~ 107 (483)
...+++...+.+++.+++.+...++..+..++. + +|.+..++...+.++|.+++..+.+.+. +..+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--R---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 445556667778888888888889988887643 3 3567888888899999888877765554 246899
Q ss_pred ccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcc
Q 041163 108 LGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQN 187 (483)
Q Consensus 108 ~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (483)
..|.+.++..++..++.+...++.+++++++++. +
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~---------------------~------------------------ 208 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERYSEIPKNIEK---------------------K------------------------ 208 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc---------------------C------------------------
Confidence 9988888877766655444333211000100000 0
Q ss_pred hhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccch
Q 041163 188 LRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGF 267 (483)
Q Consensus 188 ~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~i 267 (483)
.+..+..+. ....|.+..+ ++.....+..+....+....... ...+ ..-..+++..+
T Consensus 209 ~~~~~~~~~---------------l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~ 265 (437)
T TIGR00792 209 LSLKQIFKA---------------LFKNDQLLIL---CLAYLFYNLAFNIKNGVQVYYFT---YVLG--DPELFSYMGSI 265 (437)
T ss_pred CCHHHHHHH---------------HhCCHHHHHH---HHHHHHHHHHHHHHcchhheeEe---eecC--ChHHHHHHHHH
Confidence 000000000 0001121111 11122222222211111111100 0001 00012234455
Q ss_pred hHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHH
Q 041163 268 VTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIL 347 (483)
Q Consensus 268 n~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 347 (483)
..+..++..|+.+++.+++.+| +-+.+|.++.+++++...+.. .+.++.
T Consensus 266 ~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 314 (437)
T TIGR00792 266 AIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLGYLIFFFAG--------------------SNLPLI 314 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcc--------------------hhHHHH
Confidence 6666777777877776554332 235667777777766654431 134455
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHhhcC-------cchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 348 LPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 348 i~~~~l~~igE~l~~p~~~a~i~~~aP-------~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
++..++.+++.....+..++++.+.+| ++.+|.++|++++...+|..+|+.+.+.+.+..
T Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566788899999999999999988876 567899999999999999999999999887644
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-10 Score=115.99 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh-hcccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ-DDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~-~~~g~~~~F~i 112 (483)
+.+.+++.+++.+++.|...+...+.+.+++|++ +|..+.+..+.+.++|+.++|.+.+++. +..||++.|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5677888999999999999999999999999754 3566778888889999999999988775 45799999998
Q ss_pred hHHHHHHHHHHHH
Q 041163 113 PTLGLAISIVIFL 125 (483)
Q Consensus 113 ~~v~~~i~lii~~ 125 (483)
.++..++..++.+
T Consensus 168 ~~~~~~~~~~~~~ 180 (394)
T PRK03699 168 IGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 8877666554433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-10 Score=114.72 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.+++.+...+...+++.|.++++ +|.+++++.+...++|.+++|.+++++.+..||+..|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 4566788899999999999999999999999754 4678899999999999999999999988889999999998
Q ss_pred HHHHHHHHHHHHh
Q 041163 114 TLGLAISIVIFLA 126 (483)
Q Consensus 114 ~v~~~i~lii~~~ 126 (483)
++..++..++.+.
T Consensus 164 ~~~~~i~~~~~~~ 176 (392)
T PRK10473 164 AAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-10 Score=114.49 Aligned_cols=85 Identities=19% Similarity=0.108 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.+++.+...+...++..|.++++ ++.++.+++..+..+|.+++|.+++++.+..||+..|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 5677888999999999988888888888888753 3567888889999999999999999999889999999998
Q ss_pred HHHHHHHHHHH
Q 041163 114 TLGLAISIVIF 124 (483)
Q Consensus 114 ~v~~~i~lii~ 124 (483)
++..++..++.
T Consensus 169 ~~~~~~~~~~~ 179 (394)
T PRK11652 169 LLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHHHH
Confidence 87665554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-10 Score=116.69 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+...+++++++.|++++...+...+.+.|+++++ ++.+.++++..+.++|.++||++++++.+..||++.|++.
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6778899999999999877777778888998864 3567899999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHh
Q 041163 114 TLGLAISIVIFLA 126 (483)
Q Consensus 114 ~v~~~i~lii~~~ 126 (483)
++..+++.+..++
T Consensus 177 ~~~~~i~~~~~~~ 189 (413)
T PRK15403 177 AVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHH
Confidence 9887777654433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-10 Score=132.24 Aligned_cols=271 Identities=13% Similarity=0.073 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc--------c-
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD--------V- 104 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~--------~- 104 (483)
+.+.+++.+++.|++.|...|...++++|+++++ +|.++++++..+.++|.++|+++++++.+. +
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4778899999999999999999999999999875 467899999999999999999999999765 2
Q ss_pred cccccchhhHHHHH-HHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCccccc
Q 041163 105 GWALGYGLPTLGLA-ISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIG 183 (483)
Q Consensus 105 g~~~~F~i~~v~~~-i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 183 (483)
+|.+.+.+.++... +++++.+.. +.....++.+.. .. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-------------------~-------------------- 214 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRL-PKVPAAAPEVFD-KK-------------------K-------------------- 214 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcC-cCCCCCCccccc-cc-------------------c--------------------
Confidence 23333333333222 222222222 211100000000 00 0
Q ss_pred CCcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCC
Q 041163 184 STQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS 263 (483)
Q Consensus 184 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~ 263 (483)
...........+ .....+.+.. .++...+++.......+.+.....+ ..+.. -....++
T Consensus 215 ~~~~~~~~~~~~---------------~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s--~~~~~g~ 273 (1146)
T PRK08633 215 YLFPKLLWRNLK---------------LLRSDRVLWL---AIIGLSYFWFISQLAQANFPAYAKE-VLGLD--NTFQVQY 273 (1146)
T ss_pred cccHHHHHHHHH---------------HHhcCcHHHH---HHHHHHHHHHHHHHHHHhhHHHHHH-HhCCC--cHHHHHH
Confidence 000000000000 0000111111 1112222222222222222111110 01111 0001233
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
+.++..+..++...+.+++.++.. ..+.+.+|.++++++.+++.+.. +
T Consensus 274 ~~~~~~ig~~~g~~~~g~l~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 321 (1146)
T PRK08633 274 LLAASAIGIGIGSLLAGRLSGRHI-----------ELGLVPLGALGLALSLFLLPTAP---------------------S 321 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCce-----------EccchhHHHHHHHHHHHHHHHhh---------------------h
Confidence 444555555555556655533222 12234556666666665555432 5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
.+++++..++.+++..+..+...+++.+.+|++.||.++|++++...+|..+++.+++.+.
T Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 322 LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888999999999999999999999999999999999999999988877776654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-10 Score=118.22 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh------ccccc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQD------DVGWA 107 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~------~~g~~ 107 (483)
+.+.+++.+++.|++.|...|...+++.+++|++ +|.++.+++..+.++|.++++.+++++.+ ..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 5678899999999999999999999999999854 46778999999999999999999998863 36999
Q ss_pred ccchhhHHHHHHHHHHHHh
Q 041163 108 LGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 108 ~~F~i~~v~~~i~lii~~~ 126 (483)
+.|.+.++..++..++.++
T Consensus 169 ~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999988776655444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-10 Score=117.57 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.|++.|+..|...+++.|+++++ +|..+.+++..+..+|.+++++++..+.+ |++.|++.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 5778889999999999999999999999999875 35677888888999999999999877653 99999999
Q ss_pred HHHHHHHHHHHHhc
Q 041163 114 TLGLAISIVIFLAG 127 (483)
Q Consensus 114 ~v~~~i~lii~~~~ 127 (483)
++..++..+..++.
T Consensus 250 ~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 250 SLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHHHHHHHHHhc
Confidence 88777666655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=120.80 Aligned_cols=86 Identities=10% Similarity=0.009 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh---------cc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQD---------DV 104 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~---------~~ 104 (483)
+.+.+++.+++.|++.+...+ ....++++++++ +|..+.++.+...|+|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 566777889999999987644 456788999864 46788889888888998888877765532 25
Q ss_pred cccccchhhHHHHHHHHHHHHh
Q 041163 105 GWALGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 105 g~~~~F~i~~v~~~i~lii~~~ 126 (483)
||++.|++.++..++..+..++
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998877766554443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-10 Score=114.84 Aligned_cols=254 Identities=11% Similarity=0.113 Sum_probs=142.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++.+++.|++.|...|...+.+.+..+++ +|.+++++++.+.++|..+|+.+++.+.+.+.+...+...
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 166 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTG 166 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 6778889999999999999998888888887653 3578999999999999999999999997754443333322
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
.+. . .++..++.+. +++++++++..+ ..+
T Consensus 167 ~~~-~-~~~~~~~~~~--~~~~~~~~~~~~----------------------------------------------~~~- 195 (381)
T PRK03633 167 LVL-A-AILPLLFTRI--LNQQAENHDSTS----------------------------------------------IWP- 195 (381)
T ss_pred HHH-H-HHHHHHHhcc--cCCCCCCCCCCC----------------------------------------------HHH-
Confidence 221 1 1111121111 110000000000 000
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSML 273 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ii 273 (483)
... .+.....+. ........+....+.+....++ .+.. .-..+.+.++..+..+
T Consensus 196 -----------------~~~-~~~~~~~~~---~~~~~~~~~~~~~~~lp~~~~~--~g~s---~~~~g~~~~~~~~~~~ 249 (381)
T PRK03633 196 -----------------MLK-LRQARLGVN---GCIISGIVLGSLYGLMPLYLNH--QGMS---DASIGFWMALLVSAGI 249 (381)
T ss_pred -----------------HHH-hcchHHHHH---HHHHHHHHHHHHHHHHHHHHHH--cCCC---HHHHHHHHHHHHHHHH
Confidence 000 011111110 0111111111111112111111 1111 0012334445555666
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+...+.+++.+++.+ .+.+..+.++.+++.+... .. ++.....++
T Consensus 250 ~~~~~~g~l~dr~~~-----------~~~l~~~~~~~~~~~~~~~-~~-----------------------~~~~~~~~l 294 (381)
T PRK03633 250 LGQWPIGRLADRFGR-----------LLVLRVQVFVVILGSIAML-SQ-----------------------AAMAPALFI 294 (381)
T ss_pred HHHhhhHHHHHHcCc-----------HHHHHHHHHHHHHHHHHHh-hh-----------------------HHHHHHHHH
Confidence 666666666544332 2334556666555543321 10 122234566
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
.++++....|..++.+.+..|++.++...+.+++..++|+.+||.+.|.+.+
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~ 346 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ 346 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899999999999999988888888888999999999999998875
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=121.40 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.+++.++..+...+++.|.++++ +|.+++++++.+.++|.++++.+.+++.+.+||++.|++.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 5677889999999999999999999999999854 4677899999999999999999999999999999999875
Q ss_pred HHHH
Q 041163 114 TLGL 117 (483)
Q Consensus 114 ~v~~ 117 (483)
++..
T Consensus 181 ~~~~ 184 (496)
T PRK03893 181 ILPI 184 (496)
T ss_pred HHHH
Confidence 5443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=117.43 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHh-hhhhhhhhcccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGN-TALVYIQDDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~-~l~~~L~~~~g~~~~F~i 112 (483)
+.+.+++++++.+++.|...|...+++.|+++++ +|.+++++...+.++|.++++ ++++.+.+..+|+..|++
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 5778889999999999999999999999999864 357788999999999999999 577777778899999998
Q ss_pred hHHHHHHHHHHHHh
Q 041163 113 PTLGLAISIVIFLA 126 (483)
Q Consensus 113 ~~v~~~i~lii~~~ 126 (483)
.++..++..++.+.
T Consensus 156 ~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 156 PGIIAIIVSLICFL 169 (379)
T ss_pred HHHHHHHHHHHHhe
Confidence 88776665554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-09 Score=112.76 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh--------hcccccc
Q 041163 37 AFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ--------DDVGWAL 108 (483)
Q Consensus 37 ~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~--------~~~g~~~ 108 (483)
.+.++|++.|++.|...|+..++++|++|++ +|.++.+++..+.++|..+++.+++.+. +.+||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 5688999999999999999999999999875 4677888888888888888888777652 4689999
Q ss_pred cchhhHH
Q 041163 109 GYGLPTL 115 (483)
Q Consensus 109 ~F~i~~v 115 (483)
.|++..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-09 Score=110.72 Aligned_cols=84 Identities=12% Similarity=-0.029 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH-HHHhhhhhhhhhcccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGT-LLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~-~ig~~l~~~L~~~~g~~~~F~i 112 (483)
+.+.+++.+++.++|.+...+...+.+.+.++++ +|.++.+++..+.++|. ++||++++++.+.+||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 4667778899999999888888888888888754 46789999999999996 6899999999888897655554
Q ss_pred hHHHHHHHHHH
Q 041163 113 PTLGLAISIVI 123 (483)
Q Consensus 113 ~~v~~~i~lii 123 (483)
.....+++.++
T Consensus 178 ~~~~~~~~~~~ 188 (402)
T TIGR00897 178 ALAFVLTGGVI 188 (402)
T ss_pred HHHHHHHHHHH
Confidence 44433333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=114.76 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhh-hhcccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYI-QDDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L-~~~~g~~~~F~i 112 (483)
+...+++.+++.+++.|...|.....+.|++|++ +|.+++++++.+.++|..+++.+.+.+ ....+|+..|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4566778889999999999999999999999865 467899999999999999998887754 445799999999
Q ss_pred hHHHHHHHHHHHHh
Q 041163 113 PTLGLAISIVIFLA 126 (483)
Q Consensus 113 ~~v~~~i~lii~~~ 126 (483)
.++..++..++.++
T Consensus 191 ~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 191 PAICAIIVALFAFA 204 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776554433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-10 Score=115.51 Aligned_cols=83 Identities=11% Similarity=0.188 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc--ccccch
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG--WALGYG 111 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g--~~~~F~ 111 (483)
+.+.+++.+++.|++.+...|...+++.|+++++ +|.++++++..+.++|.++++.+++.+.+..+ |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 5677889999999999999999999999999864 46788999999999999999999999887766 999998
Q ss_pred hhHHHHHHHHH
Q 041163 112 LPTLGLAISIV 122 (483)
Q Consensus 112 i~~v~~~i~li 122 (483)
+.++..++.++
T Consensus 173 ~~~~~~~~~~~ 183 (405)
T TIGR00891 173 ISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHH
Confidence 87665554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-09 Score=110.28 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc-ccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD-VGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~-~g~~~~F~i 112 (483)
+.+.+++..++.++..+...|...+++.|+++++ +|.++.++..++.++|.++++.+++++.+. +||+..|++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 4555666666778889999999999999998764 367788899999999999999999999875 599999999
Q ss_pred hHHHHHHHHHHH
Q 041163 113 PTLGLAISIVIF 124 (483)
Q Consensus 113 ~~v~~~i~lii~ 124 (483)
.++..++..+..
T Consensus 167 ~a~~~l~~~l~~ 178 (402)
T PRK11902 167 MAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHH
Confidence 888776655543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-10 Score=114.50 Aligned_cols=288 Identities=10% Similarity=0.005 Sum_probs=162.6
Q ss_pred HHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhHHHH
Q 041163 38 FFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGL 117 (483)
Q Consensus 38 ~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v~~ 117 (483)
+.++.++.+++.+...|...++..|.-+ ++...++..+...++|.++||.+++.+.+ ++|+..|.+.++..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSR--------NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhh--------hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 4555677788888888888777655321 12346778888999999999999998865 79999999988877
Q ss_pred HHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHHhhhh
Q 041163 118 AISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAAVK 197 (483)
Q Consensus 118 ~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 197 (483)
++..++.+...++ +|+++...+ +.+ .... .++. .+..+
T Consensus 173 ~~~~~~~~~~~~~----~~~~~~~~~-------~~~--------~~~~-----------------~~~~-~~~~~----- 210 (396)
T TIGR00882 173 LILMLLLMFAKPK----APSSATVAN-------ALG--------ANAS-----------------AFSL-KLALE----- 210 (396)
T ss_pred HHHHHHHHHhCCC----Cchhhhhhc-------ccc--------cccC-----------------CCCH-HHHHH-----
Confidence 7665544432221 111000000 000 0000 0000 00000
Q ss_pred cCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcch---hHHHHHHhhcccCCCCCeeeCCCCccchhHHHHHH
Q 041163 198 TGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQIN---TLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSMLV 274 (483)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~---t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~iii 274 (483)
... .|.+..++.. ....+..+.+.. ..+...... +.+.+ . -..+.+.++..+...+
T Consensus 211 -------------~l~-~~~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~--~-~~~g~~~~~~~i~~~~ 269 (396)
T TIGR00882 211 -------------LFR-QRKFWMFVLY---VVGVACVYDVFDQQFANFFTSFFA-TPQQG--T-RVFGYVTTMGELLNAL 269 (396)
T ss_pred -------------HHc-CCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcc-ccccc--h-HHHHHHHHHHHHHHHH
Confidence 000 1111111211 122222222222 222111110 01101 0 0113345556666666
Q ss_pred HHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHH
Q 041163 275 CVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLM 354 (483)
Q Consensus 275 ~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 354 (483)
..+..+++.++..+| +-+.+|.++.++++......+ +++++++..++.
T Consensus 270 ~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~~~---------------------~~~~~~~~~~l~ 317 (396)
T TIGR00882 270 IMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSFAT---------------------TALEVVILKMLH 317 (396)
T ss_pred HHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHhcC---------------------ChHHHHHHHHHH
Confidence 666666665554332 225667777777665544332 667777778888
Q ss_pred hHHHHHHhhhhHHHHHhhcCcchhhHHHHH-HHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 355 GTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 355 ~igE~l~~p~~~a~i~~~aP~~~~g~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
+++.........+.+.+..|++.+++..+. ++....+|+.+++.+.|.+.+..+ +...|.+.+
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G----------------~~~~f~~~~ 381 (396)
T TIGR00882 318 AFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG----------------FQGAYLVLG 381 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc----------------cHHHHHHHH
Confidence 988877777777788888899988887766 668899999999999998886331 345677777
Q ss_pred HHHHHHHHHHHH
Q 041163 434 ILNVLNFVFFLV 445 (483)
Q Consensus 434 ~l~lv~~l~~~~ 445 (483)
++.++..++-.+
T Consensus 382 ~~~~i~~~~~~~ 393 (396)
T TIGR00882 382 CIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHH
Confidence 777666655443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-09 Score=113.25 Aligned_cols=334 Identities=11% Similarity=0.029 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhh--hhcc---------
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYI--QDDV--------- 104 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L--~~~~--------- 104 (483)
..+.+++.+.-++.+...+...++++|.+|++++ ++..+++++....++|.++|+.+++++ .+.+
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 4555666667778888888899999999997642 345799999999999999999999875 2211
Q ss_pred ----cccccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcc
Q 041163 105 ----GWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKY 180 (483)
Q Consensus 105 ----g~~~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 180 (483)
+++..|++.++.++++.++..+..|+....++++.+.. +..+.+
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~----------------------~~~~~~---------- 238 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS----------------------EAAPPS---------- 238 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh----------------------hccccc----------
Confidence 66889999999988888877665554321111110000 000000
Q ss_pred cccCCcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHh-hcccCCCCCeee
Q 041163 181 MIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKI 259 (483)
Q Consensus 181 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~-~~~~~~~~g~~i 259 (483)
+.+....+.+.-+. -.+--|.+.+++..-+...+=|+.+.+..|.++-+.. +-+..-...++-
T Consensus 239 --~~~~~~~~~~i~~~--------------~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~ 302 (477)
T TIGR01301 239 --KHGEEAFFGELFGA--------------FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDD 302 (477)
T ss_pred --ccchhhhHHHHHHH--------------HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHH
Confidence 00000000000000 0000122333444444455555555555566544321 000000000000
Q ss_pred C---CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHh--Hhh-hcC
Q 041163 260 P---PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRM-GIGLVIHIIIMVIASFTERYRLS--VAK-DHG 332 (483)
Q Consensus 260 ~---~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki-~~G~~l~~i~~~~~~~~~~~~~~--~~~-~~~ 332 (483)
- ..+-..+|.+...+..-++. ++.++. ...++. .++.++.+++++...+.+....+ ... .+.
T Consensus 303 gvr~G~~~l~~~s~~~~i~s~~l~----~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~ 371 (477)
T TIGR01301 303 GVRAGAFGLMLNSVVLGITSIGME----KLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGE 371 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 0 12223344444443333333 333331 111222 67778888888887765421000 000 000
Q ss_pred CccCCCCccch-HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCc--chhhHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 041163 333 IVEKGQQVPLT-IFILLPQFVLMGTADAFLEVAKIEFFYDQAPE--SMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKR 409 (483)
Q Consensus 333 ~~~~~~~~~~s-~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~--~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~ 409 (483)
... .+.. .+..+..+.+.|++-......=++++++..|+ +..|.+||+.+++..+.+.+.++..+.+.+..+
T Consensus 372 ~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g- 446 (477)
T TIGR01301 372 SLP----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG- 446 (477)
T ss_pred ccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 000 0111 35666778889999999999999999999995 466999999999999999999998888554332
Q ss_pred CCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 041163 410 HGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFY 450 (483)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~ 450 (483)
++..+.+.+-|+.++++++..+...++-
T Consensus 447 -------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 447 -------------GGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred -------------CCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1123467777778888888777766553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-11 Score=119.54 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc-ccccch
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG-WALGYG 111 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g-~~~~F~ 111 (483)
...+.+.+.|.+.|+|++.+.|.+.++++|.|+++ +|.+.|.+||+++++|+.+|.+.+..+.+.-+ ||++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 57899999999999999999999999999999986 57899999999999999999999999987655 999999
Q ss_pred hhHHHHHHHHHHHHhcCc
Q 041163 112 LPTLGLAISIVIFLAGTP 129 (483)
Q Consensus 112 i~~v~~~i~lii~~~~~~ 129 (483)
..++++++..++.+.+.+
T Consensus 193 ~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred eehHHHHHHHHHHHhhcc
Confidence 999998887765544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=111.97 Aligned_cols=150 Identities=15% Similarity=0.251 Sum_probs=102.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+...+++.+..++...+.+++.+++.+| +-+.++.++.++++......+ ...
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~~l~~~~~-----------------~~~ 305 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRFGFFAYGD-----------------PEY 305 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcC-----------------cch
Confidence 3445566666666666777765554332 335667777777665554421 001
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHH-HHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM-TTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
.+.+.++...++.++++.+..+....++.+..|++.||+++|+.+ ...++|+.+||.+.|.+.+..+..+.
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~-------- 377 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT-------- 377 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC--------
Confidence 123345566788999999999999999999999999999999997 57889999999999988764321000
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
-++...|.+.+++.+++.+.++++.++
T Consensus 378 --~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 378 --FDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 113566777888777777777776653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=109.59 Aligned_cols=261 Identities=9% Similarity=0.077 Sum_probs=153.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc--ccccch
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG--WALGYG 111 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g--~~~~F~ 111 (483)
+.+.+++++++.++|.+...+...+++.|++++ +|.++.++++.+.++|..+++.+++.+.+..+ |+..|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 456778889999999999888999999888853 35678999999999999999999998877643 898888
Q ss_pred hhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHH
Q 041163 112 LPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFF 191 (483)
Q Consensus 112 i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 191 (483)
+.++..++....+.. +.+++++++++. .. .
T Consensus 159 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------------~~---------------------~------ 188 (355)
T TIGR00896 159 WWALPALLALLAWIP---QVRRRVAANQTT--------------------TR---------------------L------ 188 (355)
T ss_pred HHHHHHHHHHHHHhh---hhccccCCCCCC--------------------CC---------------------C------
Confidence 776654444332221 111111100000 00 0
Q ss_pred HHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHH
Q 041163 192 NKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLS 271 (483)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~ 271 (483)
.+++ -..+++.....+...+....++....+++ ...++ .+.. ....+.+.++..+.
T Consensus 189 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~~~~~--~g~~---~~~~g~~~~~~~~~ 244 (355)
T TIGR00896 189 ----------TPVR-----IWRSPLAWQVTVFFGLQSGLYYSLIGWLP----AILIS--HGAS---AATAGSLLALMQLA 244 (355)
T ss_pred ----------CCch-----hhcCHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--cCCC---HHHHHHHHHHHHHH
Confidence 0000 00111111111111111222222222222 11111 1111 01134455666666
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
.++..++.+++.+++.+| .+.+..+.++.+++.+.+.+.. ..+. +. ..
T Consensus 245 ~i~~~~~~g~l~dr~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~-~~--~~ 292 (355)
T TIGR00896 245 QAASALLIPALARRVKDQ----------RGIVAVLAVLQLVGLCGLLFAP-------------------MHGL-WA--WA 292 (355)
T ss_pred HHHHHHhHHHHHhhhccc----------hHHHHHHHHHHHHHHHHHHHhh-------------------hhHH-HH--HH
Confidence 777777777765443221 1224456666767766555442 0011 11 24
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcC-cchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAP-ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP-~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
++.++++....|...+.+.+..+ ++.+|..+|+......+|..++|.+.+.+.+..
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999998888776555 567899999988888899999999999888644
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=114.01 Aligned_cols=290 Identities=11% Similarity=0.099 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhHH
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTL 115 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v 115 (483)
....+.+++.+++.+...+..-++..|+.+ +++ +.+....++.|.+.++|.++|+.++|++.+.++|+..|++.++
T Consensus 121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~ 196 (468)
T TIGR00788 121 KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAA 196 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 333457888999999999999999999998 332 2345677899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHHhh
Q 041163 116 GLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAA 195 (483)
Q Consensus 116 ~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 195 (483)
..++..+..++.+++-...+|+.... .. ..+ ... . .......+
T Consensus 197 l~ll~~~~~~~~~E~~~~~~~~~~~~-~~----~~~------------~~~-~-------------------~~~~~~~~ 239 (468)
T TIGR00788 197 LLLLQLFVSNLSKERRAFVRPRIGTY-LE----MNM------------ALL-T-------------------LGVLANVK 239 (468)
T ss_pred HHHHHHHHHHhccccccccccccccc-ch----hhh------------hhh-h-------------------hhHHHHHH
Confidence 88777554444433210001110000 00 000 000 0 00000000
Q ss_pred hhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHH-HHHhhhcchhHHHHHHhhcccCCCCCeeeCC---CCccchhHHH
Q 041163 196 VKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFV-PSTMLAQINTLFVKQGTTLDRAIGSSFKIPP---ASLTGFVTLS 271 (483)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~-~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~---~~l~~in~~~ 271 (483)
.... ..+ ..-.++...+.+.+ ..+ |........+.+.... ..+| .++ +.+..+..+.
T Consensus 240 ~~~~--~l~------~~l~~~~i~~~l~f---ifl~~~~~~~~~~~~f~~~~----~~lG----~s~~~~G~~~~~~~v~ 300 (468)
T TIGR00788 240 VQIL--GLR------GAIQLLEIAKPLIF---IFLSYANLPGASGSVFCATT----QCLP----GGPSFSGMSKVVGNLG 300 (468)
T ss_pred HHHH--HHH------HHHhcHHHHHHHHH---HHHHHhhcCCCCceeEEEEc----ccCC----CCcchhhhHHHHHHHH
Confidence 0000 000 00001111111111 111 1111111111111100 0112 223 3334445555
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
.++...+.+++ .+| .+..+-+.++.++.+++.+...+.. .+.+. ..+ .+ +.++.....
T Consensus 301 ~i~g~~~~~~~----~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~-~~~~~--~~g-------i~-~~~~~~~~~ 358 (468)
T TIGR00788 301 SLCGVGGYDRF----LKT-------FPYRLLFGVTTLLYTLSSLFDLILV-KRWNL--AFG-------IS-DEVFVLGDS 358 (468)
T ss_pred HHHHHHHHHHH----Hhh-------CCHHHHHHHHHHHHHHHHhCceeee-ecccc--ccC-------CC-Ceeeeeehh
Confidence 55555555554 333 4545556777777766654432111 01100 000 01 223444556
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
++.+++..+.....+.++.+.+|++.+|+..|+.....++|+.+|+.+++.+.+.-
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77788888888889999999999999999999999999999999999988887643
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-09 Score=107.91 Aligned_cols=108 Identities=10% Similarity=0.061 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHH
Q 041163 270 LSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLP 349 (483)
Q Consensus 270 ~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 349 (483)
+..++..|+.+++.+++ +..+.+.+|.++.+++++.+.+.. ..+.|+.+.
T Consensus 275 ~~~~~~~~l~~~l~~r~-----------g~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~ 324 (448)
T PRK09848 275 VGTVASAPLVPGMVARI-----------GKKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALV 324 (448)
T ss_pred HHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHH
Confidence 33455556666554332 234456778888777776654321 125566666
Q ss_pred HHHHHhHHHHHHhhhhHHHHHhhcCcc-------hhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 350 QFVLMGTADAFLEVAKIEFFYDQAPES-------MKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 350 ~~~l~~igE~l~~p~~~a~i~~~aP~~-------~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
..++.++|+.+..+..++...+.+|.+ .+|.++|++++...+|..+|+.+.+.+....
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 778899999999999999999999865 4699999999999999999999998876544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.8e-09 Score=107.20 Aligned_cols=269 Identities=14% Similarity=0.122 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc-------cc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV-------GW 106 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~-------g~ 106 (483)
....+.+...+..++...+.....+++.|..++++ | |.+..++-..+.++|.++...+.+.+.+.. +|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~---R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E---RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h---hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 34445777777899999999999999999988653 3 567777888888888876666666554322 57
Q ss_pred cccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCc
Q 041163 107 ALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQ 186 (483)
Q Consensus 107 ~~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 186 (483)
++.+.+.++..+++.++..+..|+-+.+.+++++..
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~-------------------------------------------- 212 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKI-------------------------------------------- 212 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeeecccccccccccc--------------------------------------------
Confidence 777777777777666665554443100101100000
Q ss_pred chhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhh-cccCCCCCeeeCCCCcc
Q 041163 187 NLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTT-LDRAIGSSFKIPPASLT 265 (483)
Q Consensus 187 ~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~-~~~~~~~g~~i~~~~l~ 265 (483)
++.+..+ +-.+ .|.+ ..+++.....+....-..+...+..+. +..+ + ..+.+.
T Consensus 213 --~~~~~~~--------------~~~~-nr~~---~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~-----~~~~~~ 266 (428)
T PF13347_consen 213 --SLRDSLR--------------SLFR-NRPF---RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G-----LISIFM 266 (428)
T ss_pred --ccccchh--------------hhcc-cchH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h-----hhHHHH
Confidence 0000000 0000 1111 122223333333333333333222211 1111 1 123344
Q ss_pred chhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHH
Q 041163 266 GFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIF 345 (483)
Q Consensus 266 ~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 345 (483)
.+..+..++..|+..++.+++.+| +-+..|.++.+++.++..+.. ..+.+
T Consensus 267 ~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 316 (428)
T PF13347_consen 267 LIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIGLLLAALGFLLLFFLG-------------------PGSPW 316 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHccce-----------eehhhhHHHHHHHHHHHHHHH-------------------hhhHH
Confidence 556666777788887776555443 224567777777777766653 12678
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHhhcC-------cchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 346 ILLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 346 ~li~~~~l~~igE~l~~p~~~a~i~~~aP-------~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
++.+..++.+++-....+...++..+..+ ++..|.++|++.+..-+|..+++.+.+.+....
T Consensus 317 ~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 317 LVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred HHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999887 456799999999999999999999998886544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-08 Score=105.97 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh-----------
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQD----------- 102 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~----------- 102 (483)
+...+++++++.|++.|+..|....++.+++|++ +|.++.++++.+.++|.++++.++.++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3578899999999999999999999999999975 46788999999999999999988875531
Q ss_pred ------------cccccccchhhHHHHHHHHHHHHh
Q 041163 103 ------------DVGWALGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 103 ------------~~g~~~~F~i~~v~~~i~lii~~~ 126 (483)
.++||+.|.+.++..++..+..++
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~ 223 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT 223 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 248999998887766555444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-08 Score=100.46 Aligned_cols=90 Identities=18% Similarity=-0.055 Sum_probs=72.8
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc-------
Q 041163 31 STLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD------- 103 (483)
Q Consensus 31 ~~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~------- 103 (483)
...+.+.+.+++++++.|.+...+..++++++.-++++ +.+..++......+|+++||++++.+...
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~ 79 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM 79 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence 45689999999999999999999999999999998753 46688899999999999999999977632
Q ss_pred ---------ccccccchhhHHHHHHHHHHHHh
Q 041163 104 ---------VGWALGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 104 ---------~g~~~~F~i~~v~~~i~lii~~~ 126 (483)
.+|++.|++.+....+..+++.+
T Consensus 80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 80 QVATANAEAAKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889998666554444444433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-08 Score=99.84 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=48.2
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHhhcCc-chhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 348 LPQFVLMGTADAFLEVAKIEFFYDQAPE-SMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 348 i~~~~l~~igE~l~~p~~~a~i~~~aP~-~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
....++.+++..+..+.......+..++ +.+|+.+++.+...++|..+|+.+.|.+.+.
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR 366 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666777778888888888876 8999999999999999999999999988853
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-08 Score=101.75 Aligned_cols=66 Identities=9% Similarity=0.169 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcC-------cchhhHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTK 408 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP-------~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 408 (483)
+.+.+++..++.++|+....+..++++.+.++ ++..|...|++.+...+|+.+|+.+++.+.+..+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556666788999999999999999999886 4557889999999999999999999998876553
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-08 Score=103.02 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=79.1
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
+..++.+..++..|+.+++.+++.+| +.+.++.++..++.+...+.-. . .+.+
T Consensus 271 ~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~ 323 (473)
T PRK10429 271 YLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFPVLSCGVLLLMGL-----------A-----APHN 323 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHhc-----------c-----Cchh
Confidence 34455566677777777665444332 2344555555545444322100 0 0114
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcC-------cchhhHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTK 408 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP-------~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 408 (483)
.+++++..++.++++....+...+++.+.+| ++..|.+.|.+.+..-+|..+|+.+.+.+.+..+
T Consensus 324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556666678899999999999999999977 5567779999999999999999999998875543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-08 Score=99.15 Aligned_cols=93 Identities=17% Similarity=0.078 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
.+.+.++++|.+.|+|.++..++-.++++|.|++|. +|.++.+..--.+.+|.++||..+|.+.+..|++..|++
T Consensus 157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 367799999999999999999999999999999874 478899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcc
Q 041163 113 PTLGLAISIVIFLAGTPF 130 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~ 130 (483)
.++++++...+-++..+.
T Consensus 232 L~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 232 LAIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHHHHHHHHHHHHheeCc
Confidence 999999887766554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-08 Score=101.48 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ 101 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~ 101 (483)
.+...+++++++.|+|.|...+..++++.|+.+++ ++....+++.....+|..+|+.+++.+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999875432 2334577888888999999998887553
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-07 Score=97.56 Aligned_cols=88 Identities=14% Similarity=-0.018 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh-----hccc--
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ-----DDVG-- 105 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~-----~~~g-- 105 (483)
.+.+.+++.+++.|++ |...+...+.++++||++ +|.++++++....|+|..+++++.+.+. ..+|
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3678899999999998 667889999999999865 4678899998888888888777776543 2233
Q ss_pred -----------ccccchhhHHHHHHHHHHHHhc
Q 041163 106 -----------WALGYGLPTLGLAISIVIFLAG 127 (483)
Q Consensus 106 -----------~~~~F~i~~v~~~i~lii~~~~ 127 (483)
|+.++.+-.+..++..+.+++.
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555556666665665555554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.2e-07 Score=93.78 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc-------ccc
Q 041163 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV-------GWA 107 (483)
Q Consensus 35 ~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~-------g~~ 107 (483)
...+++...+..++..++.....++.++..++. +| |.+..++...+.++|.++++.+...+.+.. ||.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~--~e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDP--TQ---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 334455555667788888888889999988763 34 567888999999999988887765554433 466
Q ss_pred ccchhhHHHHHHHHHHHHh
Q 041163 108 LGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 108 ~~F~i~~v~~~i~lii~~~ 126 (483)
....+.++..+++..+.+.
T Consensus 184 ~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 184 GGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6656666655555544443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-06 Score=88.37 Aligned_cols=272 Identities=12% Similarity=0.175 Sum_probs=159.9
Q ss_pred ccchhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q 041163 30 ASTLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALG 109 (483)
Q Consensus 30 ~~~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~ 109 (483)
+.........+..+++|+|.+...++..++.+|..+++ +|.++-++.|...-+|.+++.++.+.+.+.|+..-.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 33445666778888899999999999999999999875 467899999999999999999999988887765322
Q ss_pred chhhH----HHHHHHHHHHHhcCcceeecC-CCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccC
Q 041163 110 YGLPT----LGLAISIVIFLAGTPFYRHKK-PTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGS 184 (483)
Q Consensus 110 F~i~~----v~~~i~lii~~~~~~~~~~~~-p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (483)
.-+.- +.+.+.++-.+-..++..+.. ..+.|
T Consensus 158 ~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~-------------------------------------------- 193 (403)
T PF03209_consen 158 IQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP-------------------------------------------- 193 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC--------------------------------------------
Confidence 22222 222222222222222111111 00000
Q ss_pred CcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCC-CCeeeCCCC
Q 041163 185 TQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIG-SSFKIPPAS 263 (483)
Q Consensus 185 ~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~-~g~~i~~~~ 263 (483)
...+.+...... .+ .+.++++.+ +++....| ..|+.-+. .++ +=|.++++.
T Consensus 194 --~~~f~~a~~~~~-----------~~-~~a~~f~~f--l~l~t~a~-----------~~QD~iLE-Pygg~Vfgmsv~e 245 (403)
T PF03209_consen 194 --RPPFREAWRQVW-----------AS-PQARRFFVF--LFLGTLAF-----------FMQDVILE-PYGGEVFGMSVGE 245 (403)
T ss_pred --CccHHHHHHHHH-----------hC-CChhHHHHH--HHHHHHHH-----------HhhHHHcC-CchhHHcCCCHHH
Confidence 001111110000 00 112332221 11222111 12211111 111 001245544
Q ss_pred ccchhHHH---HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 264 LTGFVTLS---MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 264 l~~in~~~---iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
-..+|.++ .++...+.+++..+ + ..+.+.-.+|.....+++....+...
T Consensus 246 TT~Lta~~~~G~L~G~~~~g~~l~~---~-------~~~~~~a~~G~~~~~~~f~lii~a~~------------------ 297 (403)
T PF03209_consen 246 TTRLTAFWGGGTLLGMLLAGFLLSR---R-------LGKKRTAALGCLLGALAFALIILAGP------------------ 297 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---C-------CCchHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 44444443 34444444444322 2 12233344677777777766554420
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
.-+.|.+.+..+++|+|-.+......+...+.++++..|..||.|...++++..+|..+++...+..
T Consensus 298 ~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 298 LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1156677889999999999999999999999999999999999999999999999999998887654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-06 Score=91.53 Aligned_cols=88 Identities=13% Similarity=0.213 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhh------hhcccc
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYI------QDDVGW 106 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L------~~~~g~ 106 (483)
.+.+.+.+.++++|+.++...|+...+++.+|.++ +|...++++|.+.++|.++|.++...+ ...+||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 46788889999999999999999999999999875 356778899999999999999999886 346899
Q ss_pred cccchhhHHHHHHHHHHHHh
Q 041163 107 ALGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 107 ~~~F~i~~v~~~i~lii~~~ 126 (483)
++.|++.|++.++..++.++
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred eeehhHHHHHHHHHHheEEE
Confidence 99999999987776655444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-07 Score=98.72 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc---------
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV--------- 104 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~--------- 104 (483)
....+++++++.|+|.+...|...+++.|+++++ +|..++++++.+.++|.++|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 4667889999999999999999999999999875 4678999999999999999999999987643
Q ss_pred -------------cccccchhhHHHHHHHHHHHHhcCc
Q 041163 105 -------------GWALGYGLPTLGLAISIVIFLAGTP 129 (483)
Q Consensus 105 -------------g~~~~F~i~~v~~~i~lii~~~~~~ 129 (483)
+|+.+|++.++..++..+.+++..+
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2888899999887776665555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=94.48 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh----------c
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQD----------D 103 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~----------~ 103 (483)
+.+.+++++++.+++.+.. +...++++|+++++ +|.++.+++....++|..+++.+++.+.+ .
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5677888999999997765 55788999999864 35678888888889999988888877654 2
Q ss_pred ccccccc-hhhHHHHHHHHH
Q 041163 104 VGWALGY-GLPTLGLAISIV 122 (483)
Q Consensus 104 ~g~~~~F-~i~~v~~~i~li 122 (483)
.+|++.| ++.++...+..+
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPAL 182 (366)
T ss_pred ccccchhHHHHHHHHHHHHH
Confidence 4899999 544544444333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-07 Score=93.09 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh-----------
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQD----------- 102 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~----------- 102 (483)
+.+.+.+++++.|+|.|...+..++++.+..+++ ++.+..++.....++|..+||.+++.+..
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 5778889999999999999999999999987654 24556788888999999999999987742
Q ss_pred ---------------cccccccchhhHHHHHHHHHHH
Q 041163 103 ---------------DVGWALGYGLPTLGLAISIVIF 124 (483)
Q Consensus 103 ---------------~~g~~~~F~i~~v~~~i~lii~ 124 (483)
..+|+..|++.++..++..+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2469999988887655544443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=92.40 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc---ccccch
Q 041163 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG---WALGYG 111 (483)
Q Consensus 35 ~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g---~~~~F~ 111 (483)
.+.+++..++.|++.|.| ....+.++.+||+++ ...+.+++- ..|+|..+...++|.+....| |+..-.
T Consensus 105 ~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~ 176 (417)
T COG2223 105 TWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG 176 (417)
T ss_pred hHHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 367777778888887775 556678899999863 478899999 999999999999999999999 999999
Q ss_pred hhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHH
Q 041163 112 LPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFF 191 (483)
Q Consensus 112 i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 191 (483)
+..+.+++..+.+++..+...+.++..++..+ ..+
T Consensus 177 i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------------------------------------~~~ 211 (417)
T COG2223 177 IYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------------------------------------AQL 211 (417)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhccccccch---------------------------------------------hHH
Confidence 99999999888777765532221222221100 000
Q ss_pred HHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHhhcccCCCCCeeeCCCCccchhHH
Q 041163 192 NKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLA-QINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTL 270 (483)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~-q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~ 270 (483)
+.+...+....+..+....+.-+..+. +.+..+.. +++ --...++.+...-++
T Consensus 212 ------------------~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~-------~fg-~~~~~Ag~~a~~f~~ 265 (417)
T COG2223 212 ------------------KAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT-------QFG-LSPVTAGLIAFLFPL 265 (417)
T ss_pred ------------------HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC-CChhhHHHHHHHHHH
Confidence 000101111222333333333222222 22222211 122 001234566777788
Q ss_pred HHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHH-
Q 041163 271 SMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLP- 349 (483)
Q Consensus 271 ~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~- 349 (483)
...+..|+-+++-||+..+ +-..+-+..+.++...+.+... . .....+.++.+.
T Consensus 266 ~g~l~Rp~GG~LsDR~Gg~-----------rv~~~~f~~~~~~~~~l~~~~~-------~-------~~~~~~~~~~~~~ 320 (417)
T COG2223 266 IGALARPLGGWLSDRIGGR-----------RVTLAVFVGMALAAALLSLFLT-------G-------FGHGGSFVVFVAV 320 (417)
T ss_pred HHHHHHhccchhhhhccch-----------hHHHHHHHHHHHHHHHHHcccc-------c-------cccCcchHHHHHH
Confidence 8888888888887776554 2223333444444444433310 0 000123333332
Q ss_pred ---HHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchH
Q 041163 350 ---QFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLD 426 (483)
Q Consensus 350 ---~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (483)
.++..++|+ ......+-.+-|+ ..|.+.|+-....++|++.-|...+...+.++ .+.
T Consensus 321 ~l~l~~~~G~Gn----Gsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg---------------~~~ 380 (417)
T COG2223 321 FLALFVFAGLGN----GSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG---------------SYT 380 (417)
T ss_pred HHHHHHHhccCc----chheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc---------------cHH
Confidence 334444444 3333333333333 46778888888888888877888877776553 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 041163 427 YYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 427 ~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
..|+++..+.+++.+..+...+|
T Consensus 381 ~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 381 GAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788888888877776544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-08 Score=99.74 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=120.6
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+.+|.+--+.-+++.|+++.+-+++-| .+-|++|.++-.++.+..++..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR-----------~~v~~vG~~iW~~Av~~~~fs~------------------- 119 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNR-----------KRVIAVGIFIWTLAVFASGFSN------------------- 119 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCc-----------ceEEeeHHHHHHHHHHHHHHHH-------------------
Confidence 3567777777788899999998655433 3346789999888888777763
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
..|.+.+.-.+.|+||...+|...+++++..|...||+++|+++++..+|+.+|-..++.+...+. .|
T Consensus 120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W----- 187 (493)
T KOG1330|consen 120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW----- 187 (493)
T ss_pred --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce-----
Confidence 445555688999999999999999999999999999999999999999999999998888886542 24
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVSDSME 461 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~~~~~~~ 461 (483)
.+-|...++++++.+++..++.+.=+|+++++.+.|
T Consensus 188 -----r~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~ 223 (493)
T KOG1330|consen 188 -----RWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGE 223 (493)
T ss_pred -----EEEEEeehHHHHHHHHHHHhhccCcccccccccccC
Confidence 445778888998888877777665555455554444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=87.03 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
..+.....+.++......+.....+.+..|.+.||..+|+.....+++.++||++.|.....
T Consensus 353 ~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 34566778889999999999999999999999999999999999999999999999887743
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=92.35 Aligned_cols=341 Identities=12% Similarity=0.055 Sum_probs=186.4
Q ss_pred hhhHHHHHHHHH-HHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccch
Q 041163 33 LQLGAFFAALYT-LAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYG 111 (483)
Q Consensus 33 ~~~~~~~i~l~l-i~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~ 111 (483)
.+.+.+++...+ .|+|.|+.......+++.+|++ ||..+-++-..+.-+|.++=|.+.-++.+++||+..++
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l 204 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL 204 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence 456677766655 8999999999999999999975 56778888888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCcceeecCCC-CCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhH
Q 041163 112 LPTLGLAISIVIFLAGTPFYRHKKPT-GSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRF 190 (483)
Q Consensus 112 i~~v~~~i~lii~~~~~~~~~~~~p~-~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (483)
+-+...+-.++.-+..++.....+|. .+...+ ..+..+............ .. .+......+.....
T Consensus 205 ~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~ 271 (509)
T KOG2504|consen 205 IFGGISLNVLVAGALLRPLSPPKKPNEEKDLRN-----SAASVESTPKPVELRISE---RD-----SGLKKLSLSNLATL 271 (509)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc-----cccccccccccccccccc---CC-----CCCCcccccchhhh
Confidence 88887765555555555522111111 000000 000000000000000000 00 00000000000000
Q ss_pred HHHhhhhcCCCCCcccccchhHHHHHHHH--HHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchh
Q 041163 191 FNKAAVKTGSTNPWMLCSVTQVEETKQML--AMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFV 268 (483)
Q Consensus 191 l~~a~~~~~~~~~~~~~~~~~v~~~k~l~--~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in 268 (483)
.+.-+... ..+.+. .....|.+.+. .++.+.+......+.|.-....+..... +..+. +-..+.+.++-
T Consensus 272 ~~~~~~~~--~~~~~~--~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~--~~g~~---~~~aa~l~Sii 342 (509)
T KOG2504|consen 272 KRGPDKWR--NSPLQA--FLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK--SLGLS---SNDAAFLLSII 342 (509)
T ss_pred hhCCcccc--ccchhh--hhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC---hhhhHHHHHHH
Confidence 00000000 000000 00000011111 1111111111111212211112222222 22111 11233344555
Q ss_pred HHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHH
Q 041163 269 TLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILL 348 (483)
Q Consensus 269 ~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li 348 (483)
.+.-++..++++.+-++.. ++...-..++++..+++.+++.+.. +.+-++
T Consensus 343 gi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~~~~~p~~~---------------------~~~~l~ 392 (509)
T KOG2504|consen 343 GVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLARLFLPFAT---------------------TYVGLI 392 (509)
T ss_pred HHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHH
Confidence 5555556666655532211 2334446667777777765544432 445566
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHH
Q 041163 349 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYY 428 (483)
Q Consensus 349 ~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (483)
..-++.|+............+.++.+.+.-+...|+..+..+++..+||-+.+.+.+.++ +|+..
T Consensus 393 ~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------------~Y~~~ 457 (509)
T KOG2504|consen 393 VFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------------NYDHA 457 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------Ceeee
Confidence 666888999888888888999999999999999999999999999999999998887664 24556
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 041163 429 YAFFAILNVLNFVFFLVVA 447 (483)
Q Consensus 429 f~~~~~l~lv~~l~~~~~~ 447 (483)
|...+...+++++++++..
T Consensus 458 f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 458 FYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhhcChHHHHHHHHHHHhH
Confidence 7777888888877776665
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-06 Score=88.94 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=105.0
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..++.+++.+++.+| +-+..++++.+++.+...+.+
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIMLAIIGAR-----------RWIAGIMVLWGIASTATMFAT-------------------- 94 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 4455666666777778888887766554 235667777787777766653
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
++++++...++.|++|....|...+++.+..|++.||..+|++.....+|..+++.+++.+.+.....+..+|
T Consensus 95 -~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw------ 167 (412)
T TIGR02332 95 -GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGW------ 167 (412)
T ss_pred -CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch------
Confidence 6677888899999999999999999999999999999999999999999999999998876531100001134
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVA 447 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~ 447 (483)
...|.+.++.+++..++.++..
T Consensus 168 ----r~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 168 ----QWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred ----hHHHHHHHHHHHHHHHHHhhcc
Confidence 4567766666666555444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-05 Score=82.21 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=66.3
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHH
Q 041163 348 LPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDY 427 (483)
Q Consensus 348 i~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (483)
.+.-++.|+...-..+..=++..+++|++..+.+.|+|.++.-.++++||++.+.+.+.+++ ..+
T Consensus 384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~---------------~r~ 448 (477)
T PF11700_consen 384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS---------------QRY 448 (477)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------chh
Confidence 33446788888899999999999999999999999999999999999999999999987641 123
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 041163 428 YYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 428 ~f~~~~~l~lv~~l~~~~~ 446 (483)
-+..+.++.+++.+++..+
T Consensus 449 g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 449 GFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455555666666665443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=89.36 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=100.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..+...+...+..++.+.+.|++.+ .+-+..+.++.+++.+...+.+
T Consensus 47 g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~~~~~~~~~~~~~~~~~~~~-------------------- 95 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLMLLTSNVER-----------RKLLIGLFVLFIASHVLSALAW-------------------- 95 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCh-----------HHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 444555666666777777776554433 3446677778888877766653
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
++++++...+++++++....|...+++.+..|++.|+..+|++....++|..+|+.+++.+.+.. +|
T Consensus 96 -~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~------gw------ 162 (390)
T PRK03545 96 -NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL------GW------ 162 (390)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh------cH------
Confidence 67777788889999999999999999999999999999999999999999999999998776421 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFL 444 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~ 444 (483)
...|++.++++++..+...
T Consensus 163 ----~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 163 ----RTTFLAIGGGALITLLLLI 181 (390)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 4566666666655554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-06 Score=87.14 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=104.1
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..+++.+...+..++.+++.|++.+| +-+..+.++.+++.+.....+
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 91 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSDRYGRR-----------PVLLLGLFIFALSSLGLALSN-------------------- 91 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 4556677777788888888887665443 235567777777776665543
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.++++...++.++++....+...+++.+..|++.|++.+|.+.....+|..+|+.+++.+.+.. +|
T Consensus 92 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~------ 158 (385)
T TIGR00710 92 -NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SW------ 158 (385)
T ss_pred -cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH------
Confidence 56677778899999999999999999999999999999999999999999999999998776422 22
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.++..++.+...+
T Consensus 159 ----~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 159 ----HAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566666666665555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-06 Score=87.00 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=89.3
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++.+...+..++..++.+++.|++.+| +-+.++.++.+++.+...+..
T Consensus 52 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 101 (406)
T PRK11551 52 MGWAFSAGILGLLPGALLGGRLADRIGRK-----------RILIVSVALFGLFSLATAQAW------------------- 101 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHhc-------------------
Confidence 35566777788888888998888776654 224556666666655544432
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
++++++...++.+++.....|...+.+.+..|++.|+..+|+++....+|..+++.+.+...+
T Consensus 102 --~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (406)
T PRK11551 102 --DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG 164 (406)
T ss_pred --cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 667777888999999999999999999999999999999999999999999999988766653
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=86.86 Aligned_cols=134 Identities=19% Similarity=0.308 Sum_probs=103.8
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..|+.+.+.|++.+| +-+.++.++.+++.++..+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------- 83 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFAS-------------------- 83 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhhh--------------------
Confidence 4566777788888999999988776543 246677777777744444322
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.+.++...++.++++....+...+++.+..|++.|+..+|+......+|..+|+.+++.+.+.. +|
T Consensus 84 -~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~------ 150 (352)
T PF07690_consen 84 -NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW------ 150 (352)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH------
T ss_pred -hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc------
Confidence 44577888899999999999999999999999999999999999999999999999999887422 12
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q 041163 422 VSHLDYYYAFFAILNVLNFVFF 443 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~ 443 (483)
...|.+.+++.++..++.
T Consensus 151 ----~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 151 ----RWAFLISAILSLIAAILF 168 (352)
T ss_dssp ----CCHHHHHHHHHHHHHHHH
T ss_pred ----ccccccccchhhhhhhhH
Confidence 335677777777776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-06 Score=88.97 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=106.1
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+|..+...+...++.|+.+++.|++.+| +-+.+|.++.+++.++++..+
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a~------------------- 92 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFSP------------------- 92 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHcC-------------------
Confidence 35666777777888889999998776654 235667778888877766653
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhh-cCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQ-APESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~-aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~ 419 (483)
+++.++...+++++|.....|.....+.+. .|++.|+..+|++.....+|..+||.+++.+.+.. +|
T Consensus 93 --~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~------gw---- 160 (495)
T PRK14995 93 --TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF------YW---- 160 (495)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------Ch----
Confidence 677888888999999999999988888776 47899999999999999999999999999887532 34
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 420 ~~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
.+.|++...+.++..++.+...+
T Consensus 161 ------r~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 161 ------GSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566655555555544444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=86.13 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=113.2
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++-++..+...+..|++..+..++-|| +-+...+.+..+|=++.++..
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr-----------~lLl~~l~lFi~~n~l~alAp------------------- 99 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLTGRLERR-----------RLLLGLLALFIVSNLLSALAP------------------- 99 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchH-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 57888999999999999998886544332 223445555667776766654
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
|++.++..-++.+++.....+...+.+.+.+|+++|++++|+.+....++..+|.-++.++.+.. +|
T Consensus 100 --~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----- 166 (394)
T COG2814 100 --SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW----- 166 (394)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH-----
Confidence 77888999999999999999999999999999999999999999999999999999998888654 46
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|+..+.++++..+..+...+
T Consensus 167 -----R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 -----RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 56688777777777776666665
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-06 Score=87.14 Aligned_cols=109 Identities=10% Similarity=0.089 Sum_probs=87.3
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
......+...+..|+.+++.|++.+| +-+..+.++.+++++.+...+ +
T Consensus 51 ~~~~~~l~~~~~~~~~G~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~~---------------------~ 98 (400)
T PRK11646 51 ALGLRQFIQQGLGIFGGAIADRFGAK-----------PMIVTGMLMRAAGFATMAIAH---------------------E 98 (400)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHhc---------------------c
Confidence 33444555566678888887766543 225667777878777765543 6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+|+++...++.++++.+..|...+.+.+..|++.|+..+|++....++|..+|+.+++.+.
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999999999999999999999999999999998887
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-05 Score=84.08 Aligned_cols=86 Identities=8% Similarity=0.016 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccch-
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYG- 111 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~- 111 (483)
.+...+.+.+++.|+++|... +..+.+..++|++ +|.++.+++..+.++|.++++++++++ ..+||+.-+-
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~L 184 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHH
Confidence 368889999999999999999 9999999999964 467899999999999999999999995 4689875544
Q ss_pred --hhHHHHHHHHHHHHh
Q 041163 112 --LPTLGLAISIVIFLA 126 (483)
Q Consensus 112 --i~~v~~~i~lii~~~ 126 (483)
++.....+++++-++
T Consensus 185 n~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 185 NIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 445555666665544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-07 Score=90.31 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=125.9
Q ss_pred eCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCC
Q 041163 259 IPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQ 338 (483)
Q Consensus 259 i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (483)
...+++.+.-.++-++..|+.+.+.++.+.|. -|.+|++++..+-++.++.+
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i-----------pm~~Gl~vmf~sTilFafg~----------------- 157 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKI-----------PMVAGLFVMFLSTILFAFGN----------------- 157 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhcccc-----------HHHHHHHHHHHHHHHHHHcc-----------------
Confidence 44577888888999999999999988776652 26789999999998888875
Q ss_pred CccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcch-hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcccccc
Q 041163 339 QVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESM-KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWIL 417 (483)
Q Consensus 339 ~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~-~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~ 417 (483)
|.+.++.+-.++++|..+....+++++++..|++. ||.+||.-.-+.++|-.+||.++|.+++.-+
T Consensus 158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G--------- 224 (464)
T KOG3764|consen 158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG--------- 224 (464)
T ss_pred ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---------
Confidence 66678899999999999999999999999999996 5999999999999999999999999997543
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 041163 418 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTE 455 (483)
Q Consensus 418 ~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~ 455 (483)
+..=|.++++++++.+++-+++.+..+.+++
T Consensus 225 -------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~ 255 (464)
T KOG3764|consen 225 -------KSAPFLVLAIVLLLDGALQLLVIEPTEMDPD 255 (464)
T ss_pred -------CcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence 1234899999999999888888776665553
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-06 Score=85.82 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=106.6
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++.++..+...+..|+.+++.|++.+|+ . +.++.++.+++.....+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-------~----~~~~~~~~~~~~~~~~~~~------------------- 80 (399)
T TIGR00893 31 YGYVFSAFSWGYVVGQFPGGWLLDRFGARK-------T----LAVFIVIWGVFTGLQAFAG------------------- 80 (399)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCcce-------e----eHHHHHHHHHHHHHHHHHc-------------------
Confidence 356677888888899999999988776542 1 3456666666666665543
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+.++...++.+++.....+...+++.+..|++.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 81 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~----- 147 (399)
T TIGR00893 81 --AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW----- 147 (399)
T ss_pred --CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc-----
Confidence 66777888899999999999999999999999999999999999999999999999998766422 22
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVA 447 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~ 447 (483)
...|.+.+++.++..++..+..
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 148 -----QWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred -----hHHHHHHHHHHHHHHHHhhhee
Confidence 4566666666666655554443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-05 Score=80.27 Aligned_cols=126 Identities=15% Similarity=0.270 Sum_probs=84.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc
Q 041163 297 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPES 376 (483)
Q Consensus 297 ~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~ 376 (483)
.+..+-+.++.+..++=+.+.+... + +....+..+.+.-.++|+.-.+.......++.+.+|++
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~--------~--------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFS--------D--------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE 333 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhc--------C--------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 4556667777777766666655541 0 00011112233345799999999999999999999999
Q ss_pred hhhHHHHHHHH-HHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 377 MKSLGTSYSMT-TLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 377 ~~g~~~g~~~l-~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
.|++.||++.. ..++|..+|..++|.+.+.-+. .. --.+..+|.+.++++++..+++++..|
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~----~~------~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA----RG------MFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc----hh------hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999875 5789999999999988763220 00 001234566667777777777776643
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.5e-06 Score=85.64 Aligned_cols=140 Identities=12% Similarity=0.121 Sum_probs=101.2
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..++..+..++..|+.+++.|++.+| +-+.++.++.+++++.+.+.+
T Consensus 45 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~------------------- 94 (395)
T PRK10054 45 IGYAMTIALTIGVVFSLGFGILADKFDKK-----------RYMLLAITAFASGFIAIPLVN------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhHHHHHHHHHHHHHHHHHHh-------------------
Confidence 35556677777888899999998776554 124567777777777666654
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+..+...++.+.+.....|...+...+..|++.|++.+|+.+...++|..+|+.+++.+... +|
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~-------g~----- 160 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ-------SI----- 160 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc-----
Confidence 4455555566777788788889999999999999999999999999999999999999887631 22
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|.+.+++.++..++..+..++
T Consensus 161 -----~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 161 -----NLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666666655444443333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-06 Score=88.11 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=106.5
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..+...+..++..|+.+++.+++.+| +-+.+|.++.+++.++....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 88 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVAP------------------- 88 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCcC-------------------
Confidence 46677888888889999999988776554 235667777777776655542
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+.++...++++++.....|...+++.+..|++.|+..+|++.....+|..+|+.+++.+.+.. +|
T Consensus 89 --~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~w----- 155 (485)
T TIGR00711 89 --NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY------HW----- 155 (485)
T ss_pred --CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc------Cc-----
Confidence 66777888899999999999999999999999999999999999999999999999998876421 23
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
.+.|++.+.+.++..++..+..+
T Consensus 156 -----~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 156 -----RWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred -----eehhhhhhHHHHHHHHHHHHHcC
Confidence 33455555555555554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=81.98 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHH-HHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYS-MTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~-~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
++|++++.-.+.++--.+......=++++..|++..++...+. .++.++|..+.+.+.|...+..+
T Consensus 311 ~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G------------- 377 (412)
T PF01306_consen 311 NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG------------- 377 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-------------
Confidence 7778888889999999999999999999999999998888875 58999999999999998886432
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
+...|++++++.++..++-.+..++
T Consensus 378 ---~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 378 ---FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ---cHHHHHHHHHHHHHHHHHheeeecC
Confidence 2456888888888888777776555
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-05 Score=76.97 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=77.2
Q ss_pred chhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc-cccccc
Q 041163 32 TLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV-GWALGY 110 (483)
Q Consensus 32 ~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~-g~~~~F 110 (483)
..+.+.++.+-++.+.|-+....-..+++.+.||++ .....+.|..+.++|+.+++.++..+.++. ||+.+.
T Consensus 96 ~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 96 LGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 346788889999999999999999999999999964 456888999999999999999999998877 799998
Q ss_pred hhhHHHHHHHHHHHHhc
Q 041163 111 GLPTLGLAISIVIFLAG 127 (483)
Q Consensus 111 ~i~~v~~~i~lii~~~~ 127 (483)
.+=+...++++++++.-
T Consensus 169 ~~WAl~allAl~~WlPq 185 (395)
T COG2807 169 GFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888888888888765
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.44 E-value=8e-06 Score=83.61 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++.++..+...+..|+.+.+.|++.+| +-+.++.++.+++.+...+.+
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 98 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFAP------------------- 98 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 45667788888888999999998777654 224556667777666655543
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+.+....++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus 99 --~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 99 --GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred --cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788999999999999999999999999999999999999999999999999887764
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-05 Score=78.10 Aligned_cols=272 Identities=13% Similarity=0.139 Sum_probs=151.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc-------cc
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD-------VG 105 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~-------~g 105 (483)
.+....++-..+.+++...+.--..++.+...++ ++| |.+..++..++.++|.++...+.+.+... .|
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g 184 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG 184 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 3455556677778888888888899999999875 445 56788899999999988777777666432 34
Q ss_pred ccccchhhHHHHHHHHHHHHhcCc-ceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccC
Q 041163 106 WALGYGLPTLGLAISIVIFLAGTP-FYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGS 184 (483)
Q Consensus 106 ~~~~F~i~~v~~~i~lii~~~~~~-~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (483)
|+..=.+.+++.++.+++.++..| +..+..|.++..+
T Consensus 185 ~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~------------------------------------------ 222 (467)
T COG2211 185 YQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK------------------------------------------ 222 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc------------------------------------------
Confidence 544444444444444433333222 1111111110000
Q ss_pred CcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHh-hcccCCCCCeeeCCCC
Q 041163 185 TQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPAS 263 (483)
Q Consensus 185 ~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~-~~~~~~~~g~~i~~~~ 263 (483)
.++.+..+. ....|.++..+ +....++..++...+..++... .++.. +.-+.+
T Consensus 223 ---~~~~~~~~~---------------~~~Nrp~~~~l---~~~l~~~~~~~i~~s~~~yy~~y~lg~~-----~l~~~~ 276 (467)
T COG2211 223 ---LKLKDSFLL---------------IFKNRPLLLLL---LMNLLLFIAFNIRGSIMVYYVTYVLGDP-----ELFAYL 276 (467)
T ss_pred ---ccHHHHHHH---------------HHccchHHHHH---HHHHHHHHHHHHHhhhhheeEEEEcCCh-----HHHHHH
Confidence 000000000 00112222222 2233344444444444333211 11111 011111
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
.........++..++..++..++.+ .+-+.+|.++..++.+...+.. .-+
T Consensus 277 ~~~~~~~~~l~~~~~~p~L~~~~gk-----------k~~~~~~~~~~~i~~~~~~f~~-------------------~~~ 326 (467)
T COG2211 277 LLLASGAGLLIGLILWPRLVKKFGK-----------KKLFLIGLLLLAVGYLLLYFTP-------------------AGS 326 (467)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhch-----------HHHHHHHHHHHHHHHHHHHhhc-------------------Ccc
Confidence 2222222222223444444333222 3446678888888888877663 115
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcC-------cchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAP-------ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP-------~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
.++.+...++.++|.....+.-++++.+... ++..|..-|.+.+..=+|..+++.+.++.-...
T Consensus 327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666677789999999999999999988765 566788888888888899999988888876543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-05 Score=69.19 Aligned_cols=109 Identities=19% Similarity=0.243 Sum_probs=83.9
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchH
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI 344 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 344 (483)
.+...+..++..|+.+++.++..+| +-+..+..+..++.+.....+ +.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~ 51 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALSS---------------------NI 51 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHhc---------------------cH
Confidence 4455667777888888876554432 224556666666655544432 55
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+++....++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus 52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 6667778899999999999999999999999999999999999999999999999887764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-05 Score=82.36 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=91.7
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..|+.+.+.|++.+| +-+..+.++.+++.+...+.+
T Consensus 58 g~~~~~~~~~~~~~~~~~g~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 106 (394)
T PRK10213 58 GQSVTVTAFVAMFASLFITQTIQATDRR-----------YVVILFAVLLTLSCLLVSFAN-------------------- 106 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcH-----------HHHHHHHHHHHHHHHHHHHHC--------------------
Confidence 3455677888888889998887655443 345677777777776665542
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...++.+++.....|...+.+.+..|++.|+..+|......++|..+|+.+++.+.+
T Consensus 107 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 107 -SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred -hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888999999999999999999999999999999999999999999999999988875
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-05 Score=84.62 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=101.4
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..++.+++.+++.+| +-+.+++++.+++.++..+.+
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 109 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIVSDRSNAR-----------YFMGIGLIATGIINILFGFSS-------------------- 109 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcCCc-----------hhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4455666777778888888887766543 225667777777776665543
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+++.++...++.++++....+...+.+.+..|++.||+.+|++.....+|..+++.+.+.+.+.. +|
T Consensus 110 -~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~------gw------ 176 (434)
T PRK11663 110 -SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY------GW------ 176 (434)
T ss_pred -HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------cH------
Confidence 55666667788899999889999999999999999999999999999999999999988876422 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~ 446 (483)
...|.+.++++++..+...+.
T Consensus 177 ----~~~f~~~~i~~~~~~~~~~~~ 197 (434)
T PRK11663 177 ----RYGMMIAGIIAIVVGLFLCWR 197 (434)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655554444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=83.65 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=100.7
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..++.+.+.|++.|| +-+..|.++.+++.+...+.+
T Consensus 54 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a~-------------------- 102 (413)
T PRK15403 54 PASVSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFTT-------------------- 102 (413)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHcC--------------------
Confidence 3344555666677788888887776554 234567777777766655542
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
++++++..-+++|+++....+.....+.+..|++.+++.+|++.....+|..+|+.+++.+.+.. +|
T Consensus 103 -~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------gw------ 169 (413)
T PRK15403 103 -SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------HW------ 169 (413)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CH------
Confidence 66778888899999998878888888888999999999999999999999999999988776421 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.+++.+..+...+
T Consensus 170 ----~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 170 ----KVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677777766666554443333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=84.08 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.....+.+++..+|........-+++.+.-.+++. .+...-++.|...++|++++..++|.+.+..+++..|.++
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 344555677778888888888888888888766543 2456677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 041163 114 TLGLAISIVIFLAGTPF 130 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~ 130 (483)
++...+..+..++..++
T Consensus 161 ~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 88877776655554443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-06 Score=85.46 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=88.4
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+..++..++.+++.+++.+| +-+.++.++.+++.++..+.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 103 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRIGRK-----------RVLLWSILLFSVFTLLCALAT-------------------- 103 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 4455666677777888888887766543 234556666666666655432
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+.++...++.+++.....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus 104 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 104 -NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred -chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 556677788999999999999999999999999999999999999999999999999887764
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=82.17 Aligned_cols=135 Identities=11% Similarity=0.167 Sum_probs=103.7
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..+.+.+..++..|+.+++.+++.+| +-+.++.++.+++.++..+.+
T Consensus 40 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~l~~~~~------------------- 89 (382)
T PRK10091 40 AGHMISYYALGVVVGAPIIALFSSRYSLK-----------HILLFLVALCVIGNAMFTLSS------------------- 89 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHccCccH-----------HHHHHHHHHHHHHHHHHHHhC-------------------
Confidence 35667888888889999998887655443 235667777788877766653
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+++....++.++++....+.....+.+..|++.|+..+|.+.....+|..+|+.+++.+.+.. +|
T Consensus 90 --~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------gw----- 156 (382)
T PRK10091 90 --SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF------SW----- 156 (382)
T ss_pred --cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc------cH-----
Confidence 67778888899999999999999999999999999999999999999999999999988776421 23
Q ss_pred CCcchHHHHHHHHHHHHHHHHHH
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFF 443 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~ 443 (483)
...|.+.+++.++..+..
T Consensus 157 -----r~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 157 -----RYTFLLIAVFNIAVLASI 174 (382)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 455666666655554433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-05 Score=79.47 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=96.0
Q ss_pred CccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccc
Q 041163 263 SLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL 342 (483)
Q Consensus 263 ~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
+..+...+...+..|+.+.+.|++.+| +-+.++.++.+++.+.....+
T Consensus 52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~--------------------- 99 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGPLSDRIGRR-----------PVMLAGVAFFILTCLAILLAQ--------------------- 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 344566666777778888887776543 124556666666665554442
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNV 422 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (483)
+.+.++...++.+++.....+...+.+.+..|++.++..+++......+|..+|+.+++.+.+.. +|
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------~w------- 166 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------PW------- 166 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------Cc-------
Confidence 55667777889999999988999999999999999999999988888889999999888776421 23
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 041163 423 SHLDYYYAFFAILNVLNFVFFLV 445 (483)
Q Consensus 423 ~~~~~~f~~~~~l~lv~~l~~~~ 445 (483)
...|.+.++++++..+....
T Consensus 167 ---~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 167 ---RGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred ---cHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655544333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=86.84 Aligned_cols=139 Identities=13% Similarity=0.191 Sum_probs=102.8
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..++.+++.|++.+|+ -+.+|.++.+++.++..+.+
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~-------------------- 81 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRV-----------FLPIGLILCAIVNLFFGFST-------------------- 81 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhCCee-----------hhHHHHHHHHHHHHHHHHhh--------------------
Confidence 45567777778888888888887765541 24567777777777766653
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHh-hhhhhcccccccCCccccccCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSS-FLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~-~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+.++...++.++++....|...+.+.+..|++.|+..+|++.....+|..+++ .+...+.+.. +|
T Consensus 82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~----- 149 (379)
T TIGR00881 82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY------SW----- 149 (379)
T ss_pred -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC------Cc-----
Confidence 6667777889999999999999999999999999999999999999999999999 4554444211 23
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.++..++.++..+
T Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 150 -----HWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred -----hhHHHHHHHHHHHHHHHHheeeC
Confidence 34466666666665555554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-05 Score=78.60 Aligned_cols=138 Identities=16% Similarity=0.137 Sum_probs=99.4
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+...++..+...+..|+.+++.|++.+| +-+..+.++.+++.+++...+
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 105 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLAQ-------------------- 105 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3456677778888899999988776543 224556666666666555442
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.++++...++.+++... .+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 106 -~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------ 171 (408)
T PRK09874 106 -NIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GL------ 171 (408)
T ss_pred -hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH------
Confidence 666777778888888654 5777888999999999999999999999999999999998876422 12
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|++.+++.++..+..++..+
T Consensus 172 ----~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 172 ----RPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666666666555544443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0001 Score=74.40 Aligned_cols=68 Identities=21% Similarity=0.057 Sum_probs=57.5
Q ss_pred cccchhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 041163 29 KASTLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQD 102 (483)
Q Consensus 29 ~~~~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~ 102 (483)
++...+...|..++++++.|.|..++..++++++..+++.. .+-.++......+|++++|++++++..
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a------~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA------AFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH------HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34556888999999999999999999999999999988632 345667777889999999999998865
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-05 Score=78.33 Aligned_cols=113 Identities=15% Similarity=0.048 Sum_probs=92.9
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..+...+...+..|+.+++.+++.+| +.+.+|.++.+++.....+.+
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~------------------- 92 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLMV------------------- 92 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 35667777888888899999988777654 235667777777777666543
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+.++...++.++++....|...+.+.+..|++.|+..+|.+.....+|..+|+.+.+.+.+
T Consensus 93 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 93 --GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 667777888999999999999998888999999999999999999999999999999988764
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-05 Score=78.68 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=90.6
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+..++..|+.+++.|++.+| +-+.++.++.+++.+...+.... ..
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 89 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL----------------GG 89 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc----------------CC
Confidence 4556777788888999999988776554 12445555555555554444210 01
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
.+.+++....++.+++.....|...+++.+..|++.|+..+|.......+|..+|+.+++.+.+
T Consensus 90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2567777888999999999999999999999999999999999999999999999999988864
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-05 Score=81.98 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=101.0
Q ss_pred CccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccc
Q 041163 263 SLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL 342 (483)
Q Consensus 263 ~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
+..+...+...+..|+.+++.|++.+| +-+..+.++.+++.+...+.+
T Consensus 49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~~--------------------- 96 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALSG--------------------- 96 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHhC---------------------
Confidence 445555666677888888887776554 223456666666665544432
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNV 422 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (483)
+.+.++...+++++|.....|.....+.+..|++.++..+|+......+|..+|+.+++.+.+.. +|
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~------gw------- 163 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA------SW------- 163 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc------cH-------
Confidence 56667778899999999999999999999999999999999999999999999999998887532 23
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 423 SHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 423 ~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
.+.|.+...+.++..++.....++
T Consensus 164 ---~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 164 ---HWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666655555555555444333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-05 Score=78.73 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=100.7
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..|+.+++.|++.+| +-+.+|.++.+++.+.....+
T Consensus 41 ~~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~~-------------------- 89 (392)
T PRK10473 41 HIAFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLAE-------------------- 89 (392)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 3445566666777888999998776543 124567777777776655432
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.++++...++.+++.....+...+.+.+..|++.|+..+|+++....+|..+++.+++.+.+.. +|
T Consensus 90 -~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~------g~------ 156 (392)
T PRK10473 90 -TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF------PW------ 156 (392)
T ss_pred -cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------Ch------
Confidence 55667777889999999999999999999999999999999999999999999999987765321 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVA 447 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~ 447 (483)
...|.+.++++++..++.....
T Consensus 157 ----~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 157 ----QSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666666655544443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=85.42 Aligned_cols=147 Identities=10% Similarity=-0.039 Sum_probs=99.4
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.+...+.-.+..|+.+.+.|++.+| +-+.+++++.+++.+..+..... ..
T Consensus 67 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~----------------~~ 119 (467)
T PRK09556 67 GMIGLGFSITYGVGKTLVGYYADGKNTK-----------QFLPFLLILSAICMLGFGASLGS----------------GS 119 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhccCcc-----------chHHHHHHHHHHHHHHHHHHHhc----------------cc
Confidence 4455666666777888888887766554 22445555555554444332100 01
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
.+.+.++...++.|++|....|.....+.+..|++.||.++|++.....+|..+++.+......... .++|
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~---~~~~------ 190 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF---DGHV------ 190 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc---cCcc------
Confidence 2667777888999999999999999999999999999999999999999999999888765442100 0122
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.++.+++.+++.+
T Consensus 191 ----~~~f~~~g~~~~~~~i~~~~~~~ 213 (467)
T PRK09556 191 ----IGMFIFPSIIALIIGFIGLRYGS 213 (467)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHhCC
Confidence 23466666666666555555433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-05 Score=78.05 Aligned_cols=111 Identities=7% Similarity=0.161 Sum_probs=86.6
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..++.+++.|++.+| +-+..+.++.+++.++..+.+
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~~-------------------- 93 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFSH-------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 3455666777777888888887776554 235566667777766665543
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+.++++...++.++++....+...+.+.+..|++.|+..++..+...++|+.+++.+.+.+.
T Consensus 94 -~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 94 -SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred -hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778899999999999999999999999999999999999899999999998887664
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7e-05 Score=76.97 Aligned_cols=121 Identities=8% Similarity=-0.007 Sum_probs=87.7
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+.+.+...+...+.+|+.+++.|++.+|+ -+.+|.+..+++.+...+.... . ...
T Consensus 53 ~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~-----~--------~~~ 108 (392)
T PRK12382 53 VGIAVGIQFLATVLTRGYAGRLADQYGAKR-----------SALQGMLACGLAGLAYLLAAIL-----P--------VSA 108 (392)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhcchH-----------HHHHHHHHHHHHHHHHHhhhcc-----c--------cch
Confidence 355667778888899999999988876652 2344555444443222111000 0 000
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..+.++++...++.++|+....|...+.+.+..|++.|++.+|.+.....+|..+|+.+++.+.+
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~ 173 (392)
T PRK12382 109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS 173 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 12566777888999999999999999999999999999999999999999999999999887764
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00082 Score=70.68 Aligned_cols=91 Identities=8% Similarity=0.096 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhh--hhhhcccccccc
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALV--YIQDDVGWALGY 110 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~--~L~~~~g~~~~F 110 (483)
.+.-++.+||++.|+..|.......-++.+.-|++ .|...=...-+++++|.++|..++- .+.+.-.|.+.|
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 36778899999999999999999999999998876 4566667778899999999966652 455667799999
Q ss_pred hhhHHHHHHHHHHHHhcCc
Q 041163 111 GLPTLGLAISIVIFLAGTP 129 (483)
Q Consensus 111 ~i~~v~~~i~lii~~~~~~ 129 (483)
....+..++.++...+..+
T Consensus 188 ~~~~i~~~~~l~~l~~~PE 206 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPFLPE 206 (485)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999988887777666543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00032 Score=75.61 Aligned_cols=313 Identities=14% Similarity=0.075 Sum_probs=151.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+...+..|..+.++|.|... .....++|..|.+. |..++.+..+..-+...+|+.++..+..+-+|||.|++.
T Consensus 130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 67788899999999987765 45566899997542 333343433333333335566665555567999999999
Q ss_pred HHHHHHHHHHHHhcCcceeec--CCCCCccch------HHHHHHHHH-------HhCCc---CCCCCcchhhhhhhHHHh
Q 041163 114 TLGLAISIVIFLAGTPFYRHK--KPTGSPFTR------MAKVIVATI-------RKWNV---PLPTDPRELYELDLEAYA 175 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~--~p~~~~l~~------~~~v~~~a~-------~~~~~---~~~~~~~~l~~~~~~~~~ 175 (483)
++...++++..+++++.-+.+ +.++...++ ..+.+.... .-.+. ..++...... ...
T Consensus 203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VI-----a~l 277 (599)
T PF06609_consen 203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVI-----APL 277 (599)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccch-----hhH
Confidence 998888877654433321111 111111111 122221110 00000 0111111000 000
Q ss_pred hcCcccccCCcchhHH--H-HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccC
Q 041163 176 QKGKYMIGSTQNLRFF--N-KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRA 252 (483)
Q Consensus 176 ~~~~~~~~~~~~~~~l--~-~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~ 252 (483)
.-|.-. ..-+. + ..+.+.. -.|+++++ ++|.+.. .++...+.-+.|......|+.+..++..+
T Consensus 278 viG~~~-----Lv~F~~wE~~~~~~~P-l~P~~Lf~-----~~r~~~~---~lvi~fi~G~~~~s~~~l~p~~~~~vf~~ 343 (599)
T PF06609_consen 278 VIGFVL-----LVAFVVWEWFGAPKDP-LFPHRLFK-----DRRGFAA---LLVISFISGMNFFSVNILWPQQVVNVFGS 343 (599)
T ss_pred HHHHHH-----HHHHHHhhhhccCCCC-cCCHHHhc-----cchHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 000000 00000 0 0000010 12333222 1222211 11222233333444444555554443321
Q ss_pred CCCCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 041163 253 IGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHG 332 (483)
Q Consensus 253 ~~~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~ 332 (483)
-..+. ...++......+...+...+++.++.+. ++ . ...+.+|.+++.++...++...
T Consensus 344 d~~~~-~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~-------~--Kw~li~~~~~~ta~~Gama~~~----------- 401 (599)
T PF06609_consen 344 DPISI-TEIGWISSPVGFGSCAGAVILGLLFSKI-RH-------I--KWQLIFGSVLMTAFCGAMAAVR----------- 401 (599)
T ss_pred CCccc-ceeehhhhhHHHHHHHHHHHHHHHHHHc-cc-------h--hHHHHHHHHHHHHHHHHHHHcc-----------
Confidence 00000 1234455555666555555555554322 22 1 2235567666655544444331
Q ss_pred CccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 041163 333 IVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLST 402 (483)
Q Consensus 333 ~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~ 402 (483)
++ +.+.+| ...++.++|-..+.......+.-.+|.+.-|+.+|+......+|+.+|..+...
T Consensus 402 ---~~---n~~~~i--~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 402 ---PD---NKNAAI--AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred ---CC---CcchHH--HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 00 112233 333566666666777777788888999999999999999999999998776533
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.7e-05 Score=75.96 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=86.1
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..|+.+.+.|++.+| +-+.++.++.+++.+.....+
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVGRR-----------PVILVGMSIFILGTLVALFAH-------------------- 94 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 4455666777777888888887766543 224556666666666554432
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...++.+++.....+...++..+..|++.++..++.+.+...+|..+|+.+.+.+.+
T Consensus 95 -~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 157 (394)
T PRK11652 95 -SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT 157 (394)
T ss_pred -cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777778899999888888888999999999999999999999999999999999887764
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.1e-05 Score=77.95 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..++.+.+.|++.+| +.+..|.++.+++.+.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~i~~~~~~~~~-------------------- 77 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMADSFGRK-----------PVILGGTLVFALAAVACALAQ-------------------- 77 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHhhcCCh-----------HHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 3445566777777888888887665432 235667777777777766543
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.+.++...++.+++.....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 78 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------ 144 (377)
T PRK11102 78 -TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW------ 144 (377)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch------
Confidence 55566777889999999999999999999999999999999999999999999999988776422 22
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.++..+......+
T Consensus 145 ----~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 145 ----HAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 44566666666665555444333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-05 Score=77.73 Aligned_cols=115 Identities=10% Similarity=0.141 Sum_probs=91.8
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++.+...+..++..|+.+++.+|+.+| +-+.+|+++.+++.++..... .
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----------~~~~~g~~l~~~g~~l~~~~~------------------~ 90 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIFMKKLSYK-----------AGILLGLFLYALGAFLFWPAA------------------E 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH------------------h
Confidence 35667778888888899988887666554 336678888888876644331 0
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
..+.++++...++.++|..+..+....++.+..|++.+++.+++.....++|..+|+.+.+.+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1155667777899999999999999999999999999999999999999999999999988775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.7e-05 Score=77.41 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=92.2
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..+++.+...+.+|+.+++.|++.+| +-+..|+.+.+++.+..++.+
T Consensus 46 ~g~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a~------------------- 95 (393)
T PRK09705 46 AALLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELYP------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHCc-------------------
Confidence 35566777788888899999998777664 236778888999988887764
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+++.++..-++.|+|+....+...+.+.+..| +.|+.++|++.....+|..+|+.+++.+.+
T Consensus 96 --~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~ 157 (393)
T PRK09705 96 --QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ 157 (393)
T ss_pred --chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778899999999999999999999887 679999999999999999999988877653
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.2e-05 Score=72.01 Aligned_cols=303 Identities=11% Similarity=0.148 Sum_probs=172.9
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
...+....||+++|+|.-......+++..-||..+ +..-+|+++....-+|+.+-..+.++|.++.+= .|-
T Consensus 134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK------ELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~--~~~- 204 (459)
T KOG4686|consen 134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK------ELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR--MFP- 204 (459)
T ss_pred HHHHHHHhhheeeccCchhhhhhhcceeEEEecCc------cccchhhHHHHHHHhhceeeeeecHHHHHHHHH--hcc-
Confidence 36788899999999999999999999999999875 367899999999999999999999999887652 111
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
...-..+++...+-. +.-+ .+.+ .++...... ++++ +.+.
T Consensus 205 ~~ghT~LG~~l~~~~-~tc~------------~sli-cal~lg~~D---~rAe-----------------------rilh 244 (459)
T KOG4686|consen 205 GVGHTLLGLWLCFEV-KTCK------------QSLI-CALSLGLSD---DRAE-----------------------RILH 244 (459)
T ss_pred cchHHHHHHHHHHHH-HHHH------------HHHH-HHHHhhhhh---hHHH-----------------------HHHh
Confidence 111111222111110 0000 0000 000000000 0000 0000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHhhcccCCCCCeeeCCCCccchhH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTML---AQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVT 269 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y---~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~ 269 (483)
...-..|+ .| +.+++.+-+. .+..+++.++.|+... ......+. | + .+| +++..-.++++
T Consensus 245 ~e~g~~Ge-~p----kLtdv~~f~p--pfw~~~iicv~yyva~fPFi~lg~~fF-~----~-rfG----lS~~~a~~i~s 307 (459)
T KOG4686|consen 245 LEEGFLGE-EP----KLTDVNTFYP--PFWVLVIICVLYYVAWFPFITLGPMFF-Q----K-RFG----LSAVSAGNILS 307 (459)
T ss_pred hhcCcccC-Cc----ccccccccCc--cHHHHHHHHHHHHHHHHHHhhhhHHHH-H----H-hhC----CChhhccchhh
Confidence 00000010 01 1112111111 1111222333333332 22222221 1 1 123 34433344444
Q ss_pred H---HHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHH
Q 041163 270 L---SMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFI 346 (483)
Q Consensus 270 ~---~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 346 (483)
. ...+++|+++.+.++++++ ...+..+.++...+=..+.+.. .|+|
T Consensus 308 ~vy~Isav~spvfg~i~Dk~G~n----------~~wv~~a~~~tl~~H~~l~Ft~--------------------lsPy- 356 (459)
T KOG4686|consen 308 TVYGISAVLSPVFGAISDKYGFN----------LWWVASACILTLLGHSGLFFTF--------------------LSPY- 356 (459)
T ss_pred hhhhhhhhhhhhHHHhHhhhcce----------ehhHHHHHHHHHHHhhhHHhhh--------------------ccHH-
Confidence 3 3456788999998888765 2333444444444433333332 2443
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchH
Q 041163 347 LLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLD 426 (483)
Q Consensus 347 li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (483)
..+.++|++--+..-..+..+...+|++.-|+.-|+.....++|-.+.+.+++++.+..+ ++ -.++
T Consensus 357 --~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y-------~~le 422 (459)
T KOG4686|consen 357 --TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY-------DNLE 422 (459)
T ss_pred --HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch-------hhHH
Confidence 456788888888888999999999999999999999999999999999999999997443 11 1145
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 041163 427 YYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 427 ~~f~~~~~l~lv~~l~~~~~ 446 (483)
.+|+..+.+++....+.+.+
T Consensus 423 ~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 423 AFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhe
Confidence 67777777777666555554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.7e-05 Score=75.20 Aligned_cols=113 Identities=17% Similarity=0.261 Sum_probs=93.5
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..++..+...+..|+.+++.|+..+|+ -+.++.++.+++.+.....+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~~------------------- 85 (352)
T cd06174 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRR-----------VLLLGLLLFALGSLLLAFAS------------------- 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCch-----------hhHHHHHHHHHHHHHHHHhc-------------------
Confidence 345567777778888899999887765541 35667777777777766543
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...++.+++.....+...+++.+..|++.|+..+|.......+|..+++.+.+.+.+
T Consensus 86 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 86 --SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred --cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888999999999999999999999999999999999999999999999999988875
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.10 E-value=8e-05 Score=77.58 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=87.7
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++.++..+...+..|+.+++.+++.+| +-+.++.++.+++.++..+.. .
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~------------------~ 123 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAA------------------F 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhc------------------c
Confidence 35566777777888889998887776554 225567777777766655432 0
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhh
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLL 400 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~ 400 (483)
..+.++++...++.++|+....+...+++.+..|++.|+..+|++.....+|..+++.+.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 124456777889999999999999999999999999999999999999999999999998
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.3e-05 Score=77.07 Aligned_cols=138 Identities=12% Similarity=0.152 Sum_probs=100.5
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..++..+...+..|+.+.+.|++.+|+ .+.+|.++.+++.+...+.+
T Consensus 40 ~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~-----------~~~~~~~~~~~~~~~~~~~~------------------- 89 (377)
T TIGR00890 40 VAIWFTLLLIGLAMSMPVGGLLADKFGPRA-----------VAMLGGILYGLGFTFYAIAD------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCccc-----------hhHHhHHHHHHHHHHHHHHH-------------------
Confidence 355677788888889999999988876652 14567777788877766654
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+.+....++.++++....+.....+.+..|+ .|+.+++++....++|..+++.+.+.+.+. .+|
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~----- 155 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV----- 155 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH-----
Confidence 666677777899999998888888888888875 599999999999999988766555544321 122
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVA 447 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~ 447 (483)
...|.+.++++++..+..+...
T Consensus 156 -----~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 156 -----PAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhe
Confidence 4567777777666665554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=74.91 Aligned_cols=112 Identities=13% Similarity=0.220 Sum_probs=91.6
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..|+.+++.+++.+| +-+.++.++.+++.++..+.+
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------- 104 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLLADKFGRK-----------PLMMWSIVAYSVGTGLSGLAS-------------------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4556777778888888888887766543 235667777778777766654
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...++.|+|+....+....++.+..|++.|+..+|++....++|..+++.+.+.+.+
T Consensus 105 -~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 105 -GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 667778888999999999999999999999999999999999999999999999988776653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=76.21 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=100.8
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++.++..+...+..++.+++.+++.+|+ -+.+|.++.+++.+....... .
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~~-----------------~ 114 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILSAAVMLLMGFVPW-----------------A 114 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCce-----------ehHHHHHHHHHHHHHHhcccc-----------------c
Confidence 345566777777778888888876665431 245566677766665544310 0
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
..+.+.+....++.++++....+...+.+.+..|++.||..+|+++...++|+.+++.+.+...... .+|
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w----- 184 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW----- 184 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh-----
Confidence 1144455666788999999999999999999999999999999999999999999988776543211 133
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|.+.++++++..++.++..++
T Consensus 185 -----~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 185 -----HAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccC
Confidence 456777777777766555555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00024 Score=73.22 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=97.1
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..++.+.+.|++.+| +-+..+.++.+++.+...+.+
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 92 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRK-----------PVLLAGLSLFALGSLGMLWVE-------------------- 92 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCc-----------HHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 4456666777778888888887766543 234566666666666655442
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.++++...++.++|.....+...+.+.+..|++.++...+......++|..+++.+++.+.+.. +|
T Consensus 93 -~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------g~------ 159 (401)
T PRK11043 93 -SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF------GW------ 159 (401)
T ss_pred -CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------Ch------
Confidence 56677777888899988888888899999999999999999888888899999999988776422 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFL 444 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~ 444 (483)
...|.+.+++.++..++.+
T Consensus 160 ----~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 160 ----QAIFATLFAITLLLILPTL 178 (401)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 3456666666555554433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00031 Score=76.56 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc----------
Q 041163 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDV---------- 104 (483)
Q Consensus 35 ~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~---------- 104 (483)
+-.|+++.++.|+|...+.|--.+++=|-..++ +....++++|...-+|.++|.++++++.+-|
T Consensus 237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i 310 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI 310 (735)
T ss_pred HHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence 447789999999999888887777766665543 3457889999999999999999999885422
Q ss_pred ---------cccccchhhHHHHHHHHHHHHhcCcce
Q 041163 105 ---------GWALGYGLPTLGLAISIVIFLAGTPFY 131 (483)
Q Consensus 105 ---------g~~~~F~i~~v~~~i~lii~~~~~~~~ 131 (483)
-|+.+|++++.++++..+-++++-+.+
T Consensus 311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 389999999999999988888766654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00023 Score=79.05 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=88.9
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+..++..++.+++.+++.+| +-+.+++++.+++.++..+..
T Consensus 205 g~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa~-------------------- 253 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFVQ-------------------- 253 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4566777788888888898888777664 224556666666665555543
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+.++++...++.++|.....|....++.+..|++.||..++++.....+|..+++.++..+.
T Consensus 254 -s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 254 -GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999999999999999999999999999999999988776554
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=75.70 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.+...+...+..++.+++.+++.+| +-+.++.++.+++.+...+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 106 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDRYGRR-----------LAMVISIVLFSVGTLACGFAP-------------------- 106 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4455666666677778888887766543 224567777777776666543
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus 107 -~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 169 (496)
T PRK03893 107 -GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP 169 (496)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666777888999999999999999999999999999999999999999999999999987764
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.2e-05 Score=75.12 Aligned_cols=140 Identities=11% Similarity=0.037 Sum_probs=91.2
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRM-GIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki-~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
+++.++..+..++..|+.+++.|++.+| +.+ ..+.++.+++.+.....+
T Consensus 36 g~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~------------------- 85 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLATRSDYQGDR-----------KGLILFCCLLAALACLLFAWNR------------------- 85 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc-----------hHHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 4455667777788899998887766543 112 234444445544444432
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHH--HHHHHHHHHHHHHHHhhhhhhcccccccCCccccccC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLG--TSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILN 418 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~--~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~ 418 (483)
+.++++...++++.++....|...+.+.+..|++.|+.. ++......++|..+|+.+++.+.+.. +|
T Consensus 86 --~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------~~--- 154 (375)
T TIGR00899 86 --NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF------GF--- 154 (375)
T ss_pred --hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc------cc---
Confidence 555555555667777777888888988888888777644 57777788899999999988776421 23
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 419 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 419 ~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|.+.+.+.++..++.+...++
T Consensus 155 -------~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 155 -------TVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666666666665555544443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=75.08 Aligned_cols=138 Identities=13% Similarity=0.055 Sum_probs=94.1
Q ss_pred CccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccc
Q 041163 263 SLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL 342 (483)
Q Consensus 263 ~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
++.+...+...+.++..+.+.|++.|| ++.++.++..+........ ..
T Consensus 30 ~~~s~~~~g~~i~~~~~G~l~Dr~grr------------~~~~~~~~~~~~~~~~~~~--------------------~~ 77 (368)
T TIGR00903 30 LLAITYPAAFLALTIPSGLLLDRAFKR------------WFLFGSLATFAAAAGRLLD--------------------PF 77 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccch------------HHHHHHHHHHHHHHHHHHH--------------------hc
Confidence 344455555677778888888777543 1223333322221111111 11
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNV 422 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (483)
++++++...++.++||.. .+.....+.+..|++.|++++|+......+|..+++.++..+.+. .+|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence 677888889999999986 566777778999999999999999999999999999998888742 245
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 423 SHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 423 ~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|.+.+++.++..++.+...+.
T Consensus 144 ---r~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 144 ---QLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456777777777766655554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.7e-05 Score=79.08 Aligned_cols=140 Identities=15% Similarity=0.247 Sum_probs=99.3
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+.+...+.-++..++.+++.+++.+|+ -+.++.++.+++.++..+.. .
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~-------------------~ 128 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKW-----------SIGIGMFLSSVISIVIPWAA-------------------G 128 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcch-----------hhHHHHHHHHHHHHHHHHHH-------------------H
Confidence 34556666667777888888877766542 24456666555554443321 1
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
.+.++++...+++|++|....|....++.+..|++.||.++|++.....+|..+++.+.+.+.+.. .+|
T Consensus 129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw------ 197 (465)
T TIGR00894 129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW------ 197 (465)
T ss_pred cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC------
Confidence 145667788899999999999999999999999999999999999999999999999998876421 134
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~ 446 (483)
...|.+.+++.++..++.+..
T Consensus 198 ----~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 198 ----PMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred ----CeehhhhhHHHHHHHHHHHHH
Confidence 234556666655555544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0038 Score=66.90 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=74.0
Q ss_pred chhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccch
Q 041163 32 TLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYG 111 (483)
Q Consensus 32 ~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~ 111 (483)
..+.+.+.+.|++.|++.++...+...+++|.++++ +|..+-++ +.....|+.++++.++++.+ +||+.++
T Consensus 168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~ 238 (521)
T KOG0255|consen 168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW 238 (521)
T ss_pred hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 347899999999999999999999999999999976 45677777 88889999999999999987 9999999
Q ss_pred hhHHHHHHHHHHHHh
Q 041163 112 LPTLGLAISIVIFLA 126 (483)
Q Consensus 112 i~~v~~~i~lii~~~ 126 (483)
+..+..++.++.+++
T Consensus 239 ~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 239 IISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHHHHHHHHHHc
Confidence 988887777666443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00012 Score=77.79 Aligned_cols=142 Identities=9% Similarity=0.140 Sum_probs=103.4
Q ss_pred CCccchhHHHHHHHHHHHhHHHHh-hhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVR-ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~-~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
+.+.+...+...+..++.+++.|+ +.+| +-+.+|.++.+++++.+.+.+
T Consensus 51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~-----------~~l~~~~~~~~~g~~~~~~~~------------------- 100 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWFGDRVWGTK-----------KTMVLGGIVLMLGHFMLAMSI------------------- 100 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 445566666677777777777766 3433 336678888888887766542
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcch---hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcccccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESM---KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWIL 417 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~---~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~ 417 (483)
+.+.+....++.++|+.+..|...+++.+..|++. |+...++++...++|..+|+.+++.+.+.. +|
T Consensus 101 --~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~-- 170 (475)
T TIGR00924 101 --YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY-- 170 (475)
T ss_pred --cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch--
Confidence 44556667788999999999999999999998754 888999999999999999999998887421 22
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041163 418 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYV 451 (483)
Q Consensus 418 ~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~ 451 (483)
...|.+.++.++++.++++...+.++
T Consensus 171 --------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 171 --------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 45676666666666666665555543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00038 Score=70.37 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=84.0
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+++.++..+...+..++.+++.+++.+| +.+.++.++.+++.++..+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45667788888888999999988776554 235667777777777665542
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
.+.++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+.+.+.
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 04556667788889987654 557889999999999999999999777777777777665554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=78.24 Aligned_cols=138 Identities=9% Similarity=0.163 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHHhHHHHh-hhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchH
Q 041163 266 GFVTLSMLVCVVLYDRYFVR-ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI 344 (483)
Q Consensus 266 ~in~~~iii~~pl~~~~~~~-~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 344 (483)
........++.|+.+++-|+ +++| +-+.+|.++.+++.+.+++.. ...
T Consensus 57 ~~~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~--------------------~~~ 105 (489)
T PRK10207 57 GAFAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL--------------------LKP 105 (489)
T ss_pred HHHHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc--------------------cch
Confidence 33444555566677777666 4443 346788888888887776642 011
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc--hhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCC
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPES--MKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNV 422 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~--~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (483)
..+....+++++|+.+..|...+++.++.|++ .|+...+.+++..++|..+|+.+++++.+.- +|
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~------gw------- 172 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF------GY------- 172 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh------Ch-------
Confidence 12335678899999999999999999999887 4577899999999999999999998887522 23
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 041163 423 SHLDYYYAFFAILNVLNFVFFLVVAKFY 450 (483)
Q Consensus 423 ~~~~~~f~~~~~l~lv~~l~~~~~~~~~ 450 (483)
.+.|.+.++..+++.+.++...+++
T Consensus 173 ---~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 173 ---SVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcchhh
Confidence 4556665544444444444443343
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=76.83 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=94.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..|+.+++.+++.+| +-+..+.++.+++.+++.+.+
T Consensus 57 ~~~~s~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------- 105 (455)
T TIGR00892 57 AWISSIMLAVLYAGGPISSILVNRFGCR-----------PVVIAGGLLASLGMILASFSS-------------------- 105 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCch-----------HHHHhhHHHHHHHHHHHHHhh--------------------
Confidence 4455666666677888888887766544 234556667777766655543
Q ss_pred chHHHHHH-HHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 342 LTIFILLP-QFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 342 ~s~~~li~-~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+.+.. ..++.++++....+.....+.+..| +.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 106 -~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----- 172 (455)
T TIGR00892 106 -NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----- 172 (455)
T ss_pred -hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch-----
Confidence 4444433 3367788888776777788888776 67999999999999999999999988776422 23
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~ 446 (483)
...|++.+++.+++.+..++.
T Consensus 173 -----r~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 173 -----RGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHh
Confidence 556777777777665554443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00026 Score=77.67 Aligned_cols=252 Identities=12% Similarity=-0.028 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc-ccc----
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG-WAL---- 108 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g-~~~---- 108 (483)
......+.++.++++.++.+++-.++.+++.++.+ .+++++.+++|+|..+.+.+. .+++..+..... +..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccc
Confidence 46667788899999999999999999999998752 444557999999999999965 555555554443 332
Q ss_pred ---cchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCC
Q 041163 109 ---GYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGST 185 (483)
Q Consensus 109 ---~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (483)
-++..++.+++.++.++.+...++..++.+.+-....+++..++.... .
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~--------------------------~-- 208 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR--------------------------K-- 208 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH--------------------------H--
Confidence 234667777777778888877666666654433333444433222100 0
Q ss_pred cchhHHHHhhhhcCCCCCccc--ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCC
Q 041163 186 QNLRFFNKAAVKTGSTNPWML--CSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS 263 (483)
Q Consensus 186 ~~~~~l~~a~~~~~~~~~~~~--~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~ 263 (483)
++.. ........|.. ..+..+++.+...+++.++...+.+|+.+.|.....+.+...++...+ .+...+..
T Consensus 209 ---~~~~---~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~~ip 281 (654)
T TIGR00926 209 ---RFST---RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGFEIQ 281 (654)
T ss_pred ---hhcc---CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCEecC
Confidence 0000 00000001110 022234567888899999999999999999988888888888877633 33333456
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSV 327 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~ 327 (483)
.+.++++..+++.++...+-+++..+..++ ..+++++.-+.+.+.++.+.+.+.+......
T Consensus 282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888898886543 4678888888888888888888887555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00038 Score=73.22 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=95.0
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+...+...+...+..|+.+++.|++.+| +-+.+|.++.+++.+...+... ..
T Consensus 66 g~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----------~~l~~~~~~~~i~~~~~~~~~~-----------------~~ 117 (452)
T PRK11273 66 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPW-----------------AT 117 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCc-----------hhHHHHHHHHHHHHHHHHhhhc-----------------cc
Confidence 3445666667777888888887776554 1255677777777766555420 01
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHH-HhhhhhhcccccccCCccccccCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFL-SSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~l-g~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
.+.++++...++.++++....|.....+.+..|++.||..+|+++....+|..+ ++++....... .+|
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~gw----- 186 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF------NDW----- 186 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh------ccH-----
Confidence 145566677788999999988888888999999999999999999999988754 44432222211 123
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|.+.++++++..++.++..++
T Consensus 187 -----~~~f~i~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 187 -----HAALYMPAFAAILVALFAFAMMRD 210 (452)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHccC
Confidence 345666666666655555444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=73.32 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=89.2
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..++..+...+.+|+.+++.|++.+|+ -+..+.++.+++.+.+.+.... .+ ..
T Consensus 53 ~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~-----~~--------~~ 108 (399)
T PRK05122 53 AGLVISLQYLATLLSRPHAGRYADTLGPKK-----------AVVFGLCGCALSGLLYLLAGLL-----AA--------WP 108 (399)
T ss_pred HHHHHHHHHHHHHHhchhhHhHHhccCCcc-----------hHHHHHHHHHHHHHHHHHhhhh-----hc--------cc
Confidence 356677788888899999999988876652 2445655555554443332100 00 00
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..+.++++...++.++|+....+.....+.+..|++.|++.+|++.....+|..+|+.+++.+.+
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 109 VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 12455677788999999999999999999999999999999999999999999999999887764
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=78.53 Aligned_cols=133 Identities=12% Similarity=0.183 Sum_probs=101.3
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++.+++..+..++..++.+.+.|++.||+ -+.++.++.+++.+...+..
T Consensus 129 ~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~-----------~~~~~~~~~~i~~~~~~~~~------------------- 178 (505)
T TIGR00898 129 VDLTQSCFFVGVLLGSFVFGYLSDRFGRKK-----------VLLLSTLVTAVSGVLTAFSP------------------- 178 (505)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHcc-------------------
Confidence 356677788888888899998887766541 24556666666665555542
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+++.++...++.+++.....+....++.+..|++.|+..++++.....+|..+++.+...+.+ |
T Consensus 179 --~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------w----- 242 (505)
T TIGR00898 179 --NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---------W----- 242 (505)
T ss_pred --cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---------H-----
Confidence 667788888999999999999999999999999999999999999999999999988765542 3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFL 444 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~ 444 (483)
...|++.++..++..+..+
T Consensus 243 -----r~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 243 -----RWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=75.22 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=87.3
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..+...+..++..|+.+++.+++.+|+. +..+.++.+++++.+.+.... .
T Consensus 54 ~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~-----------l~~~~~~~~~~~~~~~~~~~~----------------~ 106 (417)
T PRK10489 54 VGLSVTLTGGAMFIGLMVGGVLADRYDRKKL-----------ILLARGTCGLGFIGLALNAFL----------------P 106 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-----------EEehHHHHHHHHHHHHHHHHc----------------C
Confidence 3566677788888889999999887765521 223555555555444322100 0
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..+.+++....++.+++..+..+...+.+.+..|++.++..++++....++|..+|+.+++.+.+
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 11456666777888999999999999999999999999999999999999999999999988764
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00076 Score=71.13 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=86.9
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+...+..++.+++.|++.||+ -+.++.++.+++.+..++.+...... .....
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~-----------~~~~~~~l~~i~~~~~~~~~~~~~~~---------~~~~~ 117 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISALGSAWPEFGFTSI---------GPDNT 117 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHhhccccccc---------cccch
Confidence 44566677778888899999888777652 24556666666655554432100000 00001
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
..+++++..-++.|++.....|...+++.+..|++.||.++|++.....+|..+++.+...+.
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 134456677899999999999999999999999999999999999999999999887765554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=75.87 Aligned_cols=142 Identities=15% Similarity=0.255 Sum_probs=101.9
Q ss_pred chhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHH
Q 041163 266 GFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIF 345 (483)
Q Consensus 266 ~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 345 (483)
+++-.-=+++-++..+++.++++ .+.|.+|+.+.++=++.+...+ |+|
T Consensus 413 a~~~~gEI~~~ffs~klI~kiGH-----------v~v~~lgLa~~~~Rf~~~S~L~---------------------n~W 460 (618)
T KOG3762|consen 413 ALCHAGEILFYFFSFKLIEKIGH-----------VNVMYLGLACNVGRFLYYSYLQ---------------------NPW 460 (618)
T ss_pred hhhccchHHHHHHHHHHHHHhcc-----------cceeeehhhHHHHHHHHHHHhc---------------------Cch
Confidence 33333344455555555444332 3445677777777777766665 777
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHH-HHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcc
Q 041163 346 ILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSM-TTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSH 424 (483)
Q Consensus 346 ~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
..+|.=+++++...++..+..+++...+|++++..++|+.- ..-++|..+|++++|.+.+..+
T Consensus 461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg---------------- 524 (618)
T KOG3762|consen 461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG---------------- 524 (618)
T ss_pred heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------
Confidence 77777799999999999999999999999999999999765 4677888888888877775432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 041163 425 LDYYYAFFAILNVLNFVFFLVVAKFYVYKTE 455 (483)
Q Consensus 425 ~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~ 455 (483)
...+|...++.+++..+.++.+.+..+++..
T Consensus 525 ~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~ 555 (618)
T KOG3762|consen 525 ARTTFRIFGIACLVTLALFISIQLLLKRRGF 555 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 1456777787777777777777666665553
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0012 Score=70.72 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc-ccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD-VGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~-~g~~~~F~i 112 (483)
+...+++||++.|+|.|+..-...-+++|.-|++ .|...-+.+.+.+++|.+++..++....+. ++||..+.+
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 7889999999999999999988888888888764 467788889999999999996666666543 589988877
Q ss_pred hHHHHHHHHHH
Q 041163 113 PTLGLAISIVI 123 (483)
Q Consensus 113 ~~v~~~i~lii 123 (483)
..+..++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 77765555444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00057 Score=71.74 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=87.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.+...+...+.+|+.+.+.+++.+| +-+.+|+++.+++.++..... ..
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r-----------~~l~~g~~~~~~~~~l~~~~~------------------~a 114 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAA------------------EI 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence 4556777777888889998887777654 235668888877776543211 01
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
.+.++++...+++++|..+..+....++.+..|++.++..++++.....+|..+|+.+++.+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 156677788899999999999999999999888887777899999999999999998876543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0003 Score=72.62 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=85.3
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..+...+...++.|+.+++.|++.||+ -+.++.++.+++.+.+....
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~-----------vl~~~~~~~~~~~~~~~~~~-------------------- 89 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGR-----------VMFIANGIKLLGCLLMLFGI-------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCch-----------hhHHHHHHHHHHHHHHHHHH--------------------
Confidence 45667777888899999999988876652 23445555555444433321
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+. +...+++++++.+..|...+.+.+..|++.|+.++|++.....+|..+||.+++.+.+
T Consensus 90 -~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 90 -HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3456789999999999999999999999999999999999999999999999998874
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=68.83 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=85.0
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..++..+...+..|+.+++.|++.+| +-+..|.++.+++.+...+... .
T Consensus 50 ~g~~~~~~~~~~~i~~~~~g~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~~~-----------------~ 101 (402)
T TIGR00897 50 SASAFTLYGIAAAISAWISGVVAEIIGPL-----------KTMMIGLLLWCVGHAAFIVFGL-----------------G 101 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence 45556777888888899999987776554 2345566666666544322110 0
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHH-HHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGN-FLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~-~lg~~l~~~~~~ 405 (483)
..+++.++...++.++|.....+...+.+.+..|++.||.++|++....++|. .+|+.+.+.+.+
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11455566678888999888888888889999999999999999999999997 578888776654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00062 Score=73.63 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=92.0
Q ss_pred HHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHH
Q 041163 275 CVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLM 354 (483)
Q Consensus 275 ~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 354 (483)
++++.+++.+++.+ .+-+.+|.++.++++++.++... + ....+.|.+.+..++.
T Consensus 77 ~~lp~G~L~Dr~G~-----------R~vllig~ll~~iG~ll~ala~~---------~------~i~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 77 FLLPYSFIYDYLGP-----------RPIFVLSMTVFCLGTLLFALTFQ---------E------VIEGSVVRLSVYNGLM 130 (591)
T ss_pred HHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHHhc---------c------cccCcHHHHHHHHHHH
Confidence 44456666655544 33467888899999988777520 0 0012667777888999
Q ss_pred hHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHH-HhhhhhhcccccccCCccccccCCCCCcchHHHHHHHH
Q 041163 355 GTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFL-SSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFA 433 (483)
Q Consensus 355 ~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~l-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 433 (483)
++|+....+.....+.+..| +.||.++|++....++|+.+ +++..+++.. + ...+|++++
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--------~----------~~~~fl~l~ 191 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--------N----------TSAYFFFLM 191 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h----------HHHHHHHHH
Confidence 99999999999999999987 56899999999999999986 4444444431 1 145677777
Q ss_pred HHHHHHHHHHHHhhhcc
Q 041163 434 ILNVLNFVFFLVVAKFY 450 (483)
Q Consensus 434 ~l~lv~~l~~~~~~~~~ 450 (483)
++.++..++.+.+.+..
T Consensus 192 vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 192 SFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHhheeCC
Confidence 77777776666665443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00068 Score=70.06 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=88.9
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQ-RMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~-ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
.++.|+++.+.|++..+. ....+ -+.++.++.++++..+.+.+ ...++|.+.+.+
T Consensus 46 ~~~~~l~g~~~Dr~~~~~------~g~rr~~l~~~~~~~~l~~~~l~~~~------------------~~~~~~~l~~~~ 101 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPL------LGRRRGWLLLTQVGLAASIAAMAFCP------------------PHAALWPLAGLA 101 (402)
T ss_pred HHHHHHHHHHHHcccccC------CCcchhHHHHHHHHHHHHHHHHHhcC------------------ccchHHHHHHHH
Confidence 467778877776652110 01112 25556666666666655542 012556666666
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHH
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAF 431 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 431 (483)
++.++......|...+++.+..|++.|+.+.++......+|..+++.+...+.+.. .+| ...|++
T Consensus 102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~-----~gw----------~~~f~i 166 (402)
T PRK11902 102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV-----LGW----------GNTYLL 166 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc-----cCH----------HHHHHH
Confidence 77888899999999999999999999999999999999999999988887766421 134 445666
Q ss_pred HHHHHHHHHHH
Q 041163 432 FAILNVLNFVF 442 (483)
Q Consensus 432 ~~~l~lv~~l~ 442 (483)
.+++.++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0007 Score=71.79 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNV 422 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (483)
|.+.++...+++|+.|....|....+..+.-.++.+|..+|+|+.+.++|+++|+++..-+.+..+.+...+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW------- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW------- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence 5666777789999999999999999999999999999999999999999999999998876432222222345
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 423 SHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 423 ~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
.+.|.+-|+++++.+++..+..+.
T Consensus 206 ---~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 206 ---RWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred ---eeehhHHHHHHHHHHheEEEEecC
Confidence 678999999988888776666554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=78.97 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=94.4
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH--HhH-----------
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR--LSV----------- 327 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~--~~~----------- 327 (483)
.+++.+.+-+...+..++.+++.++..| .+-+++|.++++++.++.++.+... +..
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r-----------~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHR-----------PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCc-----------ceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 3566777777778888888777544332 2346779999999998888775311 000
Q ss_pred ------hhhcCC--ccC-------CCCc--cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHH
Q 041163 328 ------AKDHGI--VEK-------GQQV--PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLG 390 (483)
Q Consensus 328 ------~~~~~~--~~~-------~~~~--~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~ 390 (483)
|..+.. ..+ .... ...+..++..-+++|+|+....+.+.+++.+..|++.++.++|++.....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000000 000 0000 11234556788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccc
Q 041163 391 VGNFLSSFLLSTVSD 405 (483)
Q Consensus 391 iG~~lg~~l~~~~~~ 405 (483)
+|..+|+++++.+.+
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999999988764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00028 Score=71.75 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=95.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc
Q 041163 297 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPES 376 (483)
Q Consensus 297 ~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~ 376 (483)
.++.+-+.+|+++.++..+++++.+ |++.+...+++.++-+..-.|.....+++--|++
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~---------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP---------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 4666678999999999999988875 7777888889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh--hhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 377 MKSLGTSYSMTTLGVGNFLSSFLL--STVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 377 ~~g~~~g~~~l~~~iG~~lg~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
.||+..++|+.+-++|+.+.+.++ +.+... .+| ...|.+-++++++.+++.+...|-
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~------~~w----------~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFH------GGW----------RAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhc------cch----------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999 555531 234 455777788888777777666543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00087 Score=71.12 Aligned_cols=139 Identities=9% Similarity=0.035 Sum_probs=88.0
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchH
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI 344 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 344 (483)
.+...+...+..++.+++.+++.+| +-+.++.++.+++.++..+.. +.
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~~---------------------s~ 124 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYGPR-----------YGSAFLLMLTAPAVFCMSLVS---------------------SA 124 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHhc---------------------CH
Confidence 3444444555667777777666543 224556666777766655542 55
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccC---CccccccCCCC
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRH---GHKGWILNNLN 421 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~---~~~~~~~~~~~ 421 (483)
+.++...++.|+++.... .....+.+..|++.||..+|+++....+|..+++.+...+....... +..+|
T Consensus 125 ~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW------ 197 (476)
T PLN00028 125 TGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW------ 197 (476)
T ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh------
Confidence 556666788899987654 45667889999999999999998777777777766665443210000 00123
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~ 446 (483)
...|.+.++++++..++.+++
T Consensus 198 ----r~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 198 ----RIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777666555444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00068 Score=72.42 Aligned_cols=132 Identities=10% Similarity=0.162 Sum_probs=90.9
Q ss_pred HHHHHHhHHHHhh-hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRI-TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 274 i~~pl~~~~~~~~-~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
...++.+++.|++ .+| +-+.+|.++.+++..++.+.. .+.+++....+
T Consensus 72 ~~~~~~G~LaDr~~G~r-----------~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~ 120 (500)
T PRK09584 72 GLVAIGGWLGDKVLGTK-----------RVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMA 120 (500)
T ss_pred HHHHHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHH
Confidence 3345666666553 332 336678788887876665532 02334556678
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcch--hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHH
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESM--KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYA 430 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~--~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 430 (483)
++++|..+..|...+++.+..|++. ++..+++++...++|..+|+.+.+.+.+.. +| .+.|.
T Consensus 121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~ 184 (500)
T PRK09584 121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY------GW----------SVAFA 184 (500)
T ss_pred HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHH
Confidence 8899999999999999999988653 445788899999999999999999887422 22 55677
Q ss_pred HHHHHHHHHHHHHHHhhhcccc
Q 041163 431 FFAILNVLNFVFFLVVAKFYVY 452 (483)
Q Consensus 431 ~~~~l~lv~~l~~~~~~~~~~~ 452 (483)
+.++..+++.+.+++..+.+++
T Consensus 185 i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 185 LSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred HHHHHHHHHHHHHHHhHHHhcc
Confidence 7666666666666666555544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00025 Score=83.30 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=82.9
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchH
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI 344 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 344 (483)
.++..+..++++|+.+.+.|++.+|+ ..+.+..+.++.+ +.....+.. .++
T Consensus 58 ~~~~~l~~~l~~~~~G~laDr~~rk~--------~~~~~~~~~~~~~-~~~~~~~~~--------------------~s~ 108 (1140)
T PRK06814 58 GAVFILPFFIFSALAGQLADKYDKAK--------LAKILKFAEIGIA-ALAIYGFHL--------------------NSV 108 (1140)
T ss_pred HHHHHHHHHHHhhhHHhhhhhccHHH--------HHHHHHHHHHHHH-HHHHHHHHH--------------------hhH
Confidence 44556667888899999988876652 1111111111111 111111110 177
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
|+++...+++++++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+++++..
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999999999999999999999999999875
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00064 Score=71.83 Aligned_cols=174 Identities=15% Similarity=0.133 Sum_probs=106.2
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccC--CC
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEK--GQ 338 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~ 338 (483)
.+..+.+.++..++.+|+.+++.|+...|.+++ ++. +..|.+...++++++......... ..++ ..
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~------~~~~~~~~ 108 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHL------FGDNLDKK 108 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhh------cccccccc
Confidence 355677889999999999999988643333322 222 344566677777666554311000 0000 00
Q ss_pred CccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchh--hHHHHHHHHHHHHHHHHHhhhhhhcc--ccccc--CCc
Q 041163 339 QVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMK--SLGTSYSMTTLGVGNFLSSFLLSTVS--DKTKR--HGH 412 (483)
Q Consensus 339 ~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~--g~~~g~~~l~~~iG~~lg~~l~~~~~--~~~~~--~~~ 412 (483)
.....+++.+..+.+..++-....+..-+++.+..|++.| +.+.+....+.++|+.+|+.+++... +..+. ...
T Consensus 109 ~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~ 188 (477)
T TIGR01301 109 TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEA 188 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccc
Confidence 1112234455566667777778888899999999999865 67899999999999999999987652 11000 000
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041163 413 KGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYV 451 (483)
Q Consensus 413 ~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~ 451 (483)
.+.++ .++...|.+.+++.++..++..+..|..+
T Consensus 189 ~~~~~-----~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 189 CGVSC-----ANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccc-----chHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 01111 13455677766666666666666666544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0017 Score=66.26 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=52.3
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTK 408 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 408 (483)
.+.++...-+....=++..+.+|++..|+..|++.++.-.++++||.+++.+.+.|+
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 566777778888999999999999999999999999999999999999999998875
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0031 Score=67.24 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHH
Q 041163 303 MGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGT 382 (483)
Q Consensus 303 i~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~ 382 (483)
+.++.++.+++...+++.+ ...+.+++.+..++.+++.....+...+++.+..|++.||..+
T Consensus 84 ll~~~i~~~~~~~~~a~~~------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~ 145 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLE------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGA 145 (491)
T ss_pred HHHHHHHHHHHHHHHHHcC------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 4566666666666655542 0125677777788888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 041163 383 SYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFL 444 (483)
Q Consensus 383 g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~ 444 (483)
|+......+|..+++.+...+.+.. .+| ...|.+.++++++..+..+
T Consensus 146 ~i~~~g~~lG~llg~~l~~~l~~~~-----~GW----------r~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 146 AISVLGYRLAMLVSGGLALWLADRY-----LGW----------QGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----cCH----------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887776411 134 4567777766666544433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00075 Score=68.27 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=84.1
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..+++.+...+..|+.+++.+++.+| +.+.+|.++..++.+.. ..+
T Consensus 37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~~------------------- 85 (355)
T TIGR00896 37 AGLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SAP------------------- 85 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hhc-------------------
Confidence 35667788888889999999987776654 22455666666655443 221
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+.++...++.++|.....+...+.+.+..| +.|+..+|++.....+|..+++.+.+.+.+
T Consensus 86 --~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~ 147 (355)
T TIGR00896 86 --GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ 147 (355)
T ss_pred --cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788999998888888888888877 479999999999999999999988877764
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0015 Score=66.02 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+++...+++.+++-....+...+++.+..|++.|+..+|+......+|..+++.+++.+..
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666667778888888899999999999999999999999999999999999999887764
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.6e-05 Score=63.66 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+.+.+++.+++.+...+...+++.|.+|++ +|.+.+++.+...++|..+++.+.+++.+..+|+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 4566677888999999999999999999999865 3578899999999999999999999999889999999988
Q ss_pred HHHHHHHHHHHHhc
Q 041163 114 TLGLAISIVIFLAG 127 (483)
Q Consensus 114 ~v~~~i~lii~~~~ 127 (483)
++..+++.+...+.
T Consensus 124 ~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 124 AILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHhhc
Confidence 88777776655543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0039 Score=65.58 Aligned_cols=109 Identities=15% Similarity=0.031 Sum_probs=72.2
Q ss_pred ccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 264 LTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 264 l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
+.++..+...++....+.+.+++..| +-+.+++++.++..+...+.- + ....|
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R-----------~v~~~~~ll~~i~~~~~~~a~-------~---------~~~~s 127 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGR-----------RWTVFSTAILIIPCVWLGIAV-------Q---------NPNTP 127 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHH-------c---------ccCCC
Confidence 34455555555545557776555543 235666667677766665531 0 00126
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhh
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLL 400 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~ 400 (483)
.+.+++..++.|++ ....+..+..+.+..|++.||+++|++....++|..+++.+.
T Consensus 128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 67778888999998 568889999999999999999999999655555555444443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00097 Score=71.17 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=86.4
Q ss_pred CccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccc
Q 041163 263 SLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL 342 (483)
Q Consensus 263 ~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
++.+...+..++..++.+++.+++.||. -+.+++++..++.++.++.. + .....
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~-----------~~~~~~~~~~v~~~~~~~~~--------~-------~~~~~ 113 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKR-----------VYGMELIIMIIATVASGLSP--------G-------SSPKS 113 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHH-----------HHHHHHHHHHHHHHHHHHcc--------C-------cccch
Confidence 4556666667777888888877776542 23456666666655544431 0 00011
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+.++++...++.|+++....+....++....|++.||..+++......+|..+++.+...+.
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999999999999999999998876553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=69.13 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=92.9
Q ss_pred cchhHHHHHHHHHHHhHHHHhh-hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRI-TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT 343 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~-~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 343 (483)
.........+..++.+++.|++ .+| +-+.+|.++.+++.+++...+ .+
T Consensus 51 ~~~~~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~--------------------~~ 99 (493)
T PRK15462 51 FSAYCSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE--------------------IH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh--------------------cc
Confidence 3444444555556777777776 332 235678888888876554321 01
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc--hhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 344 IFILLPQFVLMGTADAFLEVAKIEFFYDQAPES--MKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 344 ~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~--~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
..+......+..+|..+..|...+++.+..|++ .|....++.+...++|+.++|.+.+.+.+.. +|
T Consensus 100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw------ 167 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW------ 167 (493)
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch------
Confidence 122333445556777777788889999999875 7999999999999999999999999886422 22
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 452 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~ 452 (483)
...|.+.++.++++.+.+++..|++.+
T Consensus 168 ----~~~F~iaaigm~l~li~~~~~~~~l~~ 194 (493)
T PRK15462 168 ----AMGFGLAAVGMIAGLVIFLCGNRHFTH 194 (493)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 455766666666666666555555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0042 Score=64.99 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=80.1
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
=.++..+.+.+.+++.- .+-+.++++..++..++..+.. +++.+...-
T Consensus 75 Yal~qIp~GlLaDrlG~-----------K~vL~l~~l~Wsl~t~L~~fa~---------------------Sl~~L~i~R 122 (511)
T TIGR00806 75 HLAVLVPVFLLTDYLRY-----------KPVLVLQALSFVCVWLLLLLGT---------------------SVWHMQLME 122 (511)
T ss_pred HHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 34455555566544433 3346677777777777776654 677888889
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
++.|++|.... ....++++..|++.|++++|++.....+|..+++.+++.+.
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=77.51 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=85.2
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..++..+..+++.|+.+.+.+++.+|+ -+.++.++.+++.++..+... .
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~-----------~l~~~~~~~~~~~~~~~~~~~------------------~ 100 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNR-----------VIRIVKLFEVGLTLLIVLAYY------------------L 100 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHH-----------HHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 44455666667788888888877765541 233444443333333222210 0
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
-++++++...++.+++..+..|...+++.+..|++.|+.++|+.....++|..+|+.+++.+..
T Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1567778888999999999999999999999999999999999999999999999999988874
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=69.73 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=78.6
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccch---HHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLT---IFILL 348 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~li 348 (483)
..+..++.+++.|+++|| +-+.+++++++++.+..++.+.+. .+. +++++
T Consensus 70 ~~ig~~~~G~l~Dr~Grr-----------~~l~~~~~l~~i~~~~~a~~~~~~----------------~~g~~a~~~l~ 122 (490)
T PRK10642 70 RPLGGLFFGMLGDKYGRQ-----------KILAITIVIMSISTFCIGLIPSYA----------------TIGIWAPILLL 122 (490)
T ss_pred HHHHHHHHHHHHHhcccH-----------HHHHHHHHHHHHHHHHHHhcccHH----------------HHHHHHHHHHH
Confidence 445566666776666554 336678888888887777764110 011 12367
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 349 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 349 ~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
..-+++|+|+....|....++.+..|++.||.+++++.....+|..+|+.+...+.
T Consensus 123 ~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 123 LCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999888888888887665443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0044 Score=63.83 Aligned_cols=133 Identities=8% Similarity=0.083 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHH
Q 041163 268 VTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQR-MGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFI 346 (483)
Q Consensus 268 n~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~k-i~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 346 (483)
..+...++.|+.+.+.|++.+| ++ +..+.++.+++..+..+.+ +.++
T Consensus 60 ~~~~~~~~~~~~~~~~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 107 (393)
T PRK15011 60 SAVIGILVSQFLAGRSDKRGDR-----------KSLIVFCCLLGVLACTLFAWNR---------------------NYFV 107 (393)
T ss_pred HHHHHHHHHHHHHHHHhcccch-----------hHHHHHHHHHHHHHHHHHHHhh---------------------HHHH
Confidence 3444566667666665555443 22 2334444445554444432 4444
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHhhcCcchh--hHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcc
Q 041163 347 LLPQFVLMGTADAFLEVAKIEFFYDQAPESMK--SLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSH 424 (483)
Q Consensus 347 li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~--g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
+.....+.+..+....|...+.+.+..|++.| +.+++......++|..+|+.+++.+.+.. +|
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw--------- 172 (393)
T PRK15011 108 LLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF--------- 172 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch---------
Confidence 43333444444556778888888887766544 45668888899999999999999887422 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 425 LDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 425 ~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.++.++..++..+
T Consensus 173 -~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 -TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcC
Confidence 45677777666666655544444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=69.70 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=143.6
Q ss_pred CcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhhHHHHHHHHHHHHhcCccee
Q 041163 53 KPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYR 132 (483)
Q Consensus 53 kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~v~~~i~lii~~~~~~~~~ 132 (483)
.....+.++|...++ +|...+++...+.-.+..++|.+++.+.+.+|+...|.++.+..+++++...+..++-.
T Consensus 130 ~s~~~a~vadis~~~------~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 130 FSVGFAYVADISSEE------ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred hhhhhhheeeccchh------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 344445566665543 47889999999999999999999999999999999999999999998887666555422
Q ss_pred ecCCCC-CccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHHhhhhcCCCCCcccccchh
Q 041163 133 HKKPTG-SPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQ 211 (483)
Q Consensus 133 ~~~p~~-~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~ 211 (483)
+++.++ .+... . .++. . .+. .--|..+.. .+
T Consensus 204 ~~~~~~~~~~~~-----------~---~~~~---~----------------~~~---~~~~~~~~~----------~~-- 235 (463)
T KOG2816|consen 204 QEKERSDATLRE-----------L---TPGS---L----------------DSS---HVADAFQSL----------TK-- 235 (463)
T ss_pred Cccccccccccc-----------c---CCCc---c----------------cch---hhhhhhhhh----------cc--
Confidence 211111 00000 0 0000 0 000 000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCee-eCCCCccchh----HHHHHHHHHHHhHHHHhh
Q 041163 212 VEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFK-IPPASLTGFV----TLSMLVCVVLYDRYFVRI 286 (483)
Q Consensus 212 v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~-i~~~~l~~in----~~~iii~~pl~~~~~~~~ 286 (483)
..++|..+.++ +.....++....+..... + ..++..++ |. ...+.+.+.. .+..+++.|++.+.+
T Consensus 236 ~~~~r~~l~l~--l~~~~~~~~~~~~~~~~~-~--~yl~~~f~--w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l--- 305 (463)
T KOG2816|consen 236 VGPDRLLLLLL--LVAFLSSLPEAGGASDVL-L--LYLKAKFG--WNKKEFSDLLSLVSILGIISQLLLLPLLSSIL--- 305 (463)
T ss_pred cCCCccchHHH--HHHHHHHHHHhcCceeEE-E--EEEeeecC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 11122211111 111111111111111000 0 01111112 11 1112233333 333333443332221
Q ss_pred hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhH
Q 041163 287 TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKI 366 (483)
Q Consensus 287 ~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~ 366 (483)
.. .+-+.+|+..-.+++.+.++.+ .. |++-...+....-..+.|...
T Consensus 306 ~~-----------~~~i~lGl~~~~~~~~~~af~~---------------------~~-w~~~~~~v~~~~~~~~~pa~~ 352 (463)
T KOG2816|consen 306 GE-----------KRLISLGLLSEFLQLLLFAFAT---------------------ET-WMMFAAGVVVALAGIVFPAIR 352 (463)
T ss_pred hh-----------hhHhhHHHHHHHHHHHHHHHhc---------------------cc-hhhhHHHHHHHhhcchhHHHH
Confidence 11 1146788888888888888764 22 333333444455568889999
Q ss_pred HHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 367 EFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 367 a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
+++++++.++.+|..+++.....++.+.+++.+-+.+...+
T Consensus 353 s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 353 AFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0036 Score=65.39 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=76.0
Q ss_pred HHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHH
Q 041163 274 VCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVL 353 (483)
Q Consensus 274 i~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 353 (483)
+..++.+++.|++.|| +-+.+++++.+++.+..++.+.+-. - ...++.+++..-++
T Consensus 78 ig~~~~G~l~Dr~Grr-----------~~l~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~l~~~R~l 133 (432)
T PRK10406 78 IGGWLFGRIADKHGRK-----------KSMLISVCMMCFGSLVIACLPGYET-----I--------GTWAPALLLLARLF 133 (432)
T ss_pred HHHHHHHHHHHhcCcH-----------HHHHHHHHHHHHHHHHHhhcCCchh-----H--------HHHHHHHHHHHHHH
Confidence 4555566666555543 3356677777777776655431000 0 00134567778899
Q ss_pred HhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 354 MGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 354 ~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+|+|+....|...+++.+..|++.||.+++++......|..+++.+...+.
T Consensus 134 ~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 134 QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888877654443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.027 Score=61.12 Aligned_cols=84 Identities=6% Similarity=-0.043 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH-Hhhhhhhhhhcccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLL-GNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~i-g~~l~~~L~~~~g~~~~F~i 112 (483)
+.+.+++.+++.|+|.+.+.+.....+.++||+ +|..+.++...+.++|+++ +++..+++. .+|+..|++
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~ 189 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFF 189 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHH
Confidence 678889999999999999999999999999973 3578999999999999975 665566554 357777777
Q ss_pred hHHHHHHHHHHHHh
Q 041163 113 PTLGLAISIVIFLA 126 (483)
Q Consensus 113 ~~v~~~i~lii~~~ 126 (483)
.++..++..++.+.
T Consensus 190 l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 190 LMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHh
Confidence 77766665554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=66.99 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=77.7
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
.+..|+.+++.|++.+| +-+.++.++.+++.++..+.+.+.. ......++++...+
T Consensus 49 ~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~r~ 104 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRK-----------KTLVITLLMMGIGTLLIGLLPSYAT-------------IGIWAPILLLLARL 104 (394)
T ss_pred hhHHHHhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHhhCCChhh-------------hHHHHHHHHHHHHH
Confidence 34567777776665543 2355677777777766655431000 00011234666779
Q ss_pred HHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 353 LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+++++.....+.....+.+..|++.|+.+++.......+|..+++.+...+.
T Consensus 105 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 105 IQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00086 Score=69.77 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=85.4
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+.++..+.-.+..|+.+.+.|+...|.+++ ...+.+|..+.+++++.+.... +....
T Consensus 38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~---------------~~~~~ 96 (437)
T TIGR00792 38 GTLFLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTP---------------DFSAT 96 (437)
T ss_pred HHHHHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCC---------------CCCcc
Confidence 44566677778888899999888765443332 1224567777777666654431 00011
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhc-CcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQA-PESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~a-P~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
...+|.+..+++.+++..+..++..+...+.. |++.|+...+.......+|..+++.+.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~ 160 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV 160 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567778888889999888888888888877 5688999999999999999888877765554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0029 Score=64.89 Aligned_cols=112 Identities=8% Similarity=-0.002 Sum_probs=73.9
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRM-GIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki-~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
+...++..+...+..|+.+.+.++..|+ ...+++ .++..+..+. .....+
T Consensus 42 g~~~s~~~~~~~~~~~~~g~l~d~~~~~--------~~~~~~~~~~~~l~~~~--~~~~~~------------------- 92 (382)
T TIGR00902 42 GLLIGAALIARFAGGLFFAPLIKDANHI--------IIALRLLALASAIFAAA--FSAGAH------------------- 92 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHHHHHHH--HHHhhh-------------------
Confidence 3445566777777788888887665332 122222 2232222221 111221
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
++|+++...++++.+.....|...+++.+. ++.++...|......++|..+|+.+++.+.+.
T Consensus 93 --~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~ 154 (382)
T TIGR00902 93 --NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM 154 (382)
T ss_pred --hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777888888877888887776543 56789999999999999999999999888753
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=68.38 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=88.7
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+..+....+-.+++.|+.+.+.|++-||+ -+...-++.++..+.+.+.... .
T Consensus 47 valv~~a~~LP~~Llsl~aG~laDr~drrr-----------ili~~~~~~~~~~~~L~~l~~~----------------~ 99 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALADRFDRRR-----------ILILSQLLRALVALLLAVLAFF----------------G 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchH-----------HHHHHHHHHHHHHHHHHHHHHh----------------C
Confidence 345567778888999999999887765441 2333444433333333332210 1
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..++|.++...++.+++..+..|.-++.+-+.+|++.-..+++++.+..+++..+||.++|.+..
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34777777888999999999999999999999999999999999999999999999999998874
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.004 Score=64.07 Aligned_cols=136 Identities=7% Similarity=-0.028 Sum_probs=82.3
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHH---HHHHHHHHHHhHhhhcCCccCCC
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMV---IASFTERYRLSVAKDHGIVEKGQ 338 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~ 338 (483)
+...++..+...+..|+.+++.|++.||+ . +..+....+++.. ........
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~--------~---~~~~~~~~~~~~~~~~~~~~~~~~--------------- 94 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLISDKLGLKK--------H---LLWIISGLLVLFAPFFIYVFGPLL--------------- 94 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHH--------H---HHHHHHHHHHHHHHHHHHHhhhHH---------------
Confidence 55678888899999999999998887652 1 1222222222221 11111100
Q ss_pred Cccc-hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcccccc
Q 041163 339 QVPL-TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWIL 417 (483)
Q Consensus 339 ~~~~-s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~ 417 (483)
.. ..+......++.+++.....|...+++.+..++ ++...|......++|..+|+.+++.+.+. +|
T Consensus 95 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-------~~-- 161 (396)
T TIGR00882 95 --QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSI-------DP-- 161 (396)
T ss_pred --HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhcc-------Cc--
Confidence 00 122334556777888877888888877776543 35566777777889999999988877642 12
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHH
Q 041163 418 NNLNVSHLDYYYAFFAILNVLNFVFFL 444 (483)
Q Consensus 418 ~~~~~~~~~~~f~~~~~l~lv~~l~~~ 444 (483)
...|.+.+++.++..++.+
T Consensus 162 --------~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 162 --------QIVFWLGSGFALILMLLLM 180 (396)
T ss_pred --------hHHHHHHHHHHHHHHHHHH
Confidence 3456666666666554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.049 Score=57.02 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=91.8
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCc---cCC
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIV---EKG 337 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~---~~~ 337 (483)
.-.+..++.+.+-+.....+-.+..+.||.++ +....-+.+|.++.-++.++..+.- ..+.+.- +++
T Consensus 277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~------p~dap~~~t~~~~ 346 (461)
T KOG3098|consen 277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSF------PNDAPLRPTDSPP 346 (461)
T ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhccc------cccCCCCCCcccc
Confidence 33455666666666665555444444444221 2333335667666665555443321 1121110 011
Q ss_pred CCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcccccc
Q 041163 338 QQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWIL 417 (483)
Q Consensus 338 ~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~ 417 (483)
....-+.......++++|+++.+.....+.++....|.+ +..+-+++-+..++++.++-.......
T Consensus 347 ~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-~~~~fsi~kfyq~~~s~v~~f~~~~~~------------- 412 (461)
T KOG3098|consen 347 LLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-RAQAFSLFKFYQSVASCVAFFFSPYLL------------- 412 (461)
T ss_pred cccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhhhhhhhH-------------
Confidence 111112223445579999999999999999999999554 778888888888877776544332221
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 041163 418 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 453 (483)
Q Consensus 418 ~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~ 453 (483)
...+.+...+++....+++..+.++....
T Consensus 413 -------l~~~~l~~~i~~~i~~~~~~~~~~~~~~~ 441 (461)
T KOG3098|consen 413 -------LYIYTLGLPIFCVIATTIFFIVAERTQAM 441 (461)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234555667777777777777666433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00045 Score=70.89 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc---------
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD--------- 103 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~--------- 103 (483)
.-...+..-|.++|+|-|+=.|+..++..+.-.+..+.- .....|....+++-.|++++.++.+...+.
T Consensus 142 ~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa--~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ 219 (538)
T KOG0252|consen 142 GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGA--FIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPH 219 (538)
T ss_pred chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccc--eeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchH
Confidence 456777889999999999999999999998877654322 345677888888888998888888766432
Q ss_pred --ccccccchhhHHHHHHHHHHHHh
Q 041163 104 --VGWALGYGLPTLGLAISIVIFLA 126 (483)
Q Consensus 104 --~g~~~~F~i~~v~~~i~lii~~~ 126 (483)
.=||..|.+.++- +++++.+
T Consensus 220 ld~vWRl~~glg~vp---a~~~ly~ 241 (538)
T KOG0252|consen 220 LDGVWRIIFGLGAVP---ALLVLYF 241 (538)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHh
Confidence 3488887766654 4444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0031 Score=66.54 Aligned_cols=115 Identities=15% Similarity=0.269 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhh
Q 041163 300 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKS 379 (483)
Q Consensus 300 ~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g 379 (483)
.+.+..+.++.+++-++.-+.. ..+.+.++..-+++|++|....|..-.+..+-+|++.|+
T Consensus 103 r~v~~~~~~~sa~~t~l~P~aa-------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers 163 (466)
T KOG2532|consen 103 RRVFFISGLISALLTLLTPLAA-------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS 163 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH
Confidence 4456777777777766655543 225556778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 380 LGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 380 ~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
+..++......+|..++-.++|.+.+.+ .|| ...|.+.|+++++-.+++..+.+
T Consensus 164 ~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 164 TFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888888642 367 45566778777777777766654
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0028 Score=66.45 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=69.9
Q ss_pred cchHHHHHHH-HHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCC
Q 041163 341 PLTIFILLPQ-FVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419 (483)
Q Consensus 341 ~~s~~~li~~-~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~ 419 (483)
.++.+.++.. .++.+++--+++....+..++..-+..+|+++|++.....++..+||.+........+
T Consensus 384 ~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g----------- 452 (488)
T KOG2325|consen 384 AVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG----------- 452 (488)
T ss_pred ccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-----------
Confidence 3444444444 4678888889999999999999999999999999999999999999999887775432
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 041163 420 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 453 (483)
Q Consensus 420 ~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~ 453 (483)
+.+.+.+.+.+.++......+..+|....
T Consensus 453 -----~~~v~~~~~~~~l~~~~l~~~~~~r~~~~ 481 (488)
T KOG2325|consen 453 -----PRPVWIILLCLLLVVAALWIVFLKRLVPL 481 (488)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 23445555555455554444555554443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00039 Score=72.49 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHH-HHHHHHHHHHhhhhhhhhhc------ccc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWM-FSIFFGTLLGNTALVYIQDD------VGW 106 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y-~~iNlG~~ig~~l~~~L~~~------~g~ 106 (483)
..+.+++..++.+++.+...++...++.|++|++ +|.+++++++ ...++|.++||+++|++.+. +||
T Consensus 307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~ 380 (418)
T TIGR00889 307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW 380 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence 3456777888999999999999999999999854 4678999997 56789999999999999886 469
Q ss_pred cccchhhHHHHHHHHHHHHhcCc
Q 041163 107 ALGYGLPTLGLAISIVIFLAGTP 129 (483)
Q Consensus 107 ~~~F~i~~v~~~i~lii~~~~~~ 129 (483)
+..|.+.++..+++.+++++..+
T Consensus 381 ~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 381 QTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988887777666554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0051 Score=63.03 Aligned_cols=113 Identities=10% Similarity=0.002 Sum_probs=73.7
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.++..++..+..++..|+.+.+.|++.|+. ...+.+.++..+. +... ...
T Consensus 41 iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~--~~~~-~~~-------------------- 90 (382)
T PRK11128 41 IGLLLGAGLVARFLGSLLIAPRVKDPSQLI-------PALRLLALLTLLF--AVAF-WFG-------------------- 90 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcchH-------HHHHHHHHHHHHH--HHHH-HHh--------------------
Confidence 355667788888888999988887765531 1112222221111 1111 111
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..+.|.++...++.+++.....|...+.+.+. ++.++..+|......++|..+||.+++.+.+
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 11566666667778888888888877777765 3446777888888888999999999998874
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.023 Score=61.45 Aligned_cols=137 Identities=15% Similarity=0.294 Sum_probs=96.5
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
..|+.+.+.+...+..|+.+++.|-++||. -+..|.++..+|.++.+-.+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC-------------------
Confidence 467788888989999999999998888763 25678888888887766543
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
|..-++...++.++|...... ....+.+..|.+.|+...++..+...+....|+.+.+.+... .+|
T Consensus 130 --~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~------~~W----- 195 (599)
T PF06609_consen 130 --NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH------SGW----- 195 (599)
T ss_pred --cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC------CCc-----
Confidence 445667888888888665554 455689999999998887777666656666677777665531 356
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~ 446 (483)
.+.|.+..++..++.++..++
T Consensus 196 -----Rw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 196 -----RWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred -----chHHHHHHHHHHHHHHHHHHH
Confidence 455555566655555544444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.15 E-value=4.6e-07 Score=94.95 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc---ccccccc
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD---VGWALGY 110 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~---~g~~~~F 110 (483)
+...+.+++++.|+|.|+..+....++.+..|++ +|.....+...+.++|.+++..++..+... .+|+..+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 7888999999999999999999999999999865 456777888889999999888877655432 4599999
Q ss_pred hhhHHHHHHHHHHHHh
Q 041163 111 GLPTLGLAISIVIFLA 126 (483)
Q Consensus 111 ~i~~v~~~i~lii~~~ 126 (483)
.++.+..++.++...+
T Consensus 175 ~~~~~~~l~~~~~~~~ 190 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRFF 190 (451)
T ss_pred cccccccccccccccc
Confidence 8888876555444333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.007 Score=63.41 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHH
Q 041163 302 RMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLG 381 (483)
Q Consensus 302 ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~ 381 (483)
-+.+++++.+++.++.++.+.+.. -+ ..+++.++...+++|+++....|....++.+..|++.||.+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~ 162 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFST-----IG--------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFY 162 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHH-----HH--------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHH
Confidence 356677777777776666531100 00 00122466678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcc
Q 041163 382 TSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 382 ~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
++.......+|..+++.+...+.
T Consensus 163 ~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 163 SSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766554
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0024 Score=64.30 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+.+--.+.=.+.+|.++.+-|+++|| +. +.+|.+..++++.+++...
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRk-------pv----ll~c~~~va~s~ll~~~S~-------------------- 119 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRK-------PV----LLACLIGVALSYLLWALSR-------------------- 119 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCch-------HH----HHHHHHHHHHHHHHHHHHH--------------------
Confidence 4445555666677889999998887775 22 4567777778887777653
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
|+..++.+-++.|+--..+++ .-+++++.++++.|+..|+......++|-.+||++++++..
T Consensus 120 -~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 -NFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 554566667888888766654 57899999999999999999999999999999999999987
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=52.49 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccch
Q 041163 32 TLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYG 111 (483)
Q Consensus 32 ~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~ 111 (483)
..+...+++.+.+.++|.|+ .|-..++-.+..|... |..... .. ....+|.++...+.=....++||++-..
T Consensus 163 spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~---r~~~~V---~~-~~waig~v~ea~law~vm~~~gwr~~l~ 234 (528)
T KOG0253|consen 163 SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH---RWLLTV---MS-FFWAIGQVFEALLAWGVMSNFGWRYLLF 234 (528)
T ss_pred CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC---CCcchh---HH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34667778889999999999 8999999999888753 211122 22 4456777777777766777889986544
Q ss_pred hhH-HHHHHHHHHHH
Q 041163 112 LPT-LGLAISIVIFL 125 (483)
Q Consensus 112 i~~-v~~~i~lii~~ 125 (483)
... ..++.+...++
T Consensus 235 ~~~~pl~~~a~f~~w 249 (528)
T KOG0253|consen 235 TSSTPLMFAARFLVW 249 (528)
T ss_pred HHHhHHHHHHHHHhh
Confidence 444 44444444333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.013 Score=62.72 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=91.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.+...+...+..++.+++.+.++||. -+.++.++..+|.++.+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a~-------------------- 140 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALAP-------------------- 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHhh--------------------
Confidence 67888888888999999999988887762 35677788888887777764
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhh
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL 399 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l 399 (483)
++++++.+-++.|+|-.+.+....-+++..+|++.||.+.++..+...+|..++-.+
T Consensus 141 -~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 141 -SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred -hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999999999988333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00028 Score=75.80 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=3.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc----------
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD---------- 103 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~---------- 103 (483)
-...|.++.++.|+|.....|.-.+++=|-.++++ ..-..+++|....+|.++|.++++.+.+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 46788899999999999999998888888877653 35678999999999999999999977431
Q ss_pred -----------c-cccccchhhHHHHHHHHHHHHhcCcceee
Q 041163 104 -----------V-GWALGYGLPTLGLAISIVIFLAGTPFYRH 133 (483)
Q Consensus 104 -----------~-g~~~~F~i~~v~~~i~lii~~~~~~~~~~ 133 (483)
. -|+++|++.++..++..+-++++.|++.+
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ------------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 2 39999999999988888877776665543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.063 Score=56.65 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+...++.+-++.|+...+......-++...+|++.||.+..+..+...+|..+|..++..-.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i 176 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL 176 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh
Confidence 56678889999999999999999999999999999999999999999999999977765443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.021 Score=58.88 Aligned_cols=88 Identities=11% Similarity=-0.101 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc------ccccc-
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD------VGWAL- 108 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~------~g~~~- 108 (483)
+....|-.+-+...-.+.-.-+.+-+-||+++ +|..+-..=.+++.+|.++|.++.+.|..+ .+|..
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~------qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~ 214 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD------QRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFF 214 (480)
T ss_pred hhhHHhHHHHHHhhhHhhccccHHHHhhCCcc------hhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHH
Confidence 56677888888888888888888889999875 356777788888888888888888877543 34544
Q ss_pred -cchhhHHHHHHHHHHHHhcCc
Q 041163 109 -GYGLPTLGLAISIVIFLAGTP 129 (483)
Q Consensus 109 -~F~i~~v~~~i~lii~~~~~~ 129 (483)
.|+..+++..+-++...+.++
T Consensus 215 ~~f~~~~~l~~l~l~l~~~~~~ 236 (480)
T KOG2563|consen 215 TLFLGVECLAALLLALVLFVFT 236 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 344444443333344444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.044 Score=57.21 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=71.5
Q ss_pred HHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHh
Q 041163 276 VVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMG 355 (483)
Q Consensus 276 ~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ 355 (483)
.++.+.+.|++.|| +-+..+.++.+++.++.++.+.+.. . ......+++..-++.+
T Consensus 73 ~~~~G~l~Dr~Grr-----------~~l~~~~~~~~~~~~l~~~~~~~~~-~------------~~~~~~~l~~~R~l~G 128 (434)
T PRK15075 73 AIVLGAYIDRVGRR-----------KGLIVTLSIMASGTLLIAFVPGYAT-I------------GLAAPLLVLLGRLLQG 128 (434)
T ss_pred HHHHHHHhhhhchH-----------HHHHHHHHHHHHHHHHHHhCCcHHH-H------------HHHHHHHHHHHHHHhh
Confidence 34556665555543 2356677777777776665531000 0 0000123456678999
Q ss_pred HHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 356 TADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 356 igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+++....|....++.+..|++.||.+++++.....+|..+++.+++.+.
T Consensus 129 ~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 129 FSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred ccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999999999999999998888888777777766554
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00039 Score=74.70 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=3.0
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH----HHhHhh-----h--
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERY----RLSVAK-----D-- 330 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~----~~~~~~-----~-- 330 (483)
+.+.+.+=+..+++..++.++ +.|. ..++-+++|.+++++|.++.++.|.. .+.... .
T Consensus 41 G~i~s~~di~~~~~~~~vsy~----g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYF----GGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 344455555555555555544 4431 33677899999999999999877652 111110 0
Q ss_pred -cCCc------------cC-----CCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHH
Q 041163 331 -HGIV------------EK-----GQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVG 392 (483)
Q Consensus 331 -~~~~------------~~-----~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG 392 (483)
...- +. +.......++++.+-++.|+|..-..+.+.+++-+.++++..+.|.|+.+.+..+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 0000 00 01112223556677899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccc----ccc--------CCccccccCCCCCcchHH-HHHHHHHHHHHHHHHHHHhhhccccc
Q 041163 393 NFLSSFLLSTVSDK----TKR--------HGHKGWILNNLNVSHLDY-YYAFFAILNVLNFVFFLVVAKFYVYK 453 (483)
Q Consensus 393 ~~lg~~l~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~-~f~~~~~l~lv~~l~~~~~~~~~~~~ 453 (483)
-.+|-++++.+... ... .++..|+-. .| -|++.|.+.++.++-+..+=|++...
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA-------WWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA-------WWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH-------HHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 98887777655431 110 012222210 12 25667777777777777776666655
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=58.86 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcch---
Q 041163 301 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESM--- 377 (483)
Q Consensus 301 ~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~--- 377 (483)
+-+.+|.+++.+|.+++.+.... . ......+.+.+.++..++++|.+++-|+..++..++-+++.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~---------~---~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP---------P---SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS---------S---SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc---------c---hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 34678999999999987665310 0 00012244567788899999999999999999999999873
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 041163 378 KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKT 454 (483)
Q Consensus 378 ~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~ 454 (483)
+...-..++...++|..++..+.+.+.+.- + +...|.+.++.++++.++++.-.++|+++.
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~ 130 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNY------G----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVA 130 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S-
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhcccc------c----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcC
Confidence 444555678899999999988887776421 2 356788888889999998888888887763
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.031 Score=59.10 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=76.7
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFV 352 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 352 (483)
.+.-|+++.+.|+.-.|.+|+ +|. +.+|.+..++++.++.... +.+...-..|+...|+
T Consensus 59 ai~Dp~~G~~~D~t~~r~Gr~----rp~--il~g~i~~~i~~~llf~~p---------------~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 59 AISDPCMGLLADRTRSRWGKF----RPW--VLFGALPFGIVCVLAYSTP---------------DLSMNGKMIYAAITYT 117 (460)
T ss_pred HHHhhhheehhccCCCCCCCc----chh--HhHHHHHHHHHHHHHHhCC---------------CCCcchHHHHHHHHHH
Confidence 345567777766643333322 222 4557667777765554331 0000112567888899
Q ss_pred HHhHHHHHHhhhhHHHHHhhcC-cchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 353 LMGTADAFLEVAKIEFFYDQAP-ESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 353 l~~igE~l~~p~~~a~i~~~aP-~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+..++--+...+..++....++ ++.|+..++.-.....+|..+++.+...+.
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 779999999999999999888877765544
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.021 Score=61.06 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=91.0
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+|..++...+..+..|+.+-+.+++.. ..-+.+|.+++++|++...+..
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~-----------R~v~i~G~~v~~~g~~lssF~~------------------- 132 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSALCNRFGC-----------RTVMIAGGLVAALGLLLSSFAT------------------- 132 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhhcCc-----------hHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 5777888888888888988777544433 2346789999999999988875
Q ss_pred cchHHHHHHHH-HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 341 PLTIFILLPQF-VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 341 ~~s~~~li~~~-~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
++|.++..| ++.|+|-.++.......+..+-+++ |++++|+-....++|..+-|.+...+.+.
T Consensus 133 --~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 133 --SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred --hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence 666666655 7789999999999999999776655 99999999999999999988888877753
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.054 Score=54.48 Aligned_cols=138 Identities=22% Similarity=0.301 Sum_probs=101.2
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+.+.+++-+..-++.|+..++ .|| +++-+-+.+++++.++|..+=...
T Consensus 49 aGlLTtLPll~fg~~ap~a~~L----ar~-------~g~er~l~~~Llli~~G~~iR~~~-------------------- 97 (395)
T COG2807 49 AGLLTTLPLLAFGLFAPAAPRL----ARR-------FGEERSLFLALLLIAAGILIRSLG-------------------- 97 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH----HHH-------HhhHHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 4566777777777777777665 343 566677788888877776542221
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
+.+.++....+.+.|-...+....+++-+.-|++ .+.+||+|..+.++|..+++.+.-.+.+.. ++|
T Consensus 98 --~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW----- 164 (395)
T COG2807 98 --GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW----- 164 (395)
T ss_pred --cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH-----
Confidence 4556778889999999999999999999999998 789999999999999999999988777532 245
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhh
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVA 447 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~ 447 (483)
..-..+.+.+++++.++.+-..
T Consensus 165 -----~~aL~~WAl~allAl~~WlPq~ 186 (395)
T COG2807 165 -----RGALGFWALLALLALLIWLPQA 186 (395)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhc
Confidence 2223344566666666665543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.18 Score=51.60 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHH--HHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhH
Q 041163 303 MGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIF--ILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSL 380 (483)
Q Consensus 303 i~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~ 380 (483)
+..|.++...+..++...-...- . ..++ ...+...+ .....+.+.|+|-...+...++.+.|.+|++.|+.
T Consensus 53 I~~G~~~~~~g~~~ap~a~~~l~---~---~~~~-~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~ 125 (403)
T PF03209_consen 53 IWGGTLLQAGGLAIAPFALLLLA---E---SGQQ-SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPR 125 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc---c---cccc-cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhh
Confidence 66788887777666554432110 0 0000 01112222 34567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 381 GTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 381 ~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..++.+.+.-+|..+++.+.+.+-+
T Consensus 126 ~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 126 VVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999998876653
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.022 Score=59.73 Aligned_cols=121 Identities=10% Similarity=0.013 Sum_probs=78.2
Q ss_pred CccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccc
Q 041163 263 SLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL 342 (483)
Q Consensus 263 ~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
.+..+.-++-.+..|+++.+.|+...|.+|+ ++ -+..|.+..++++.++.... +.....
T Consensus 49 ~i~~i~~i~dai~dp~~G~lsD~~~~r~Grr----rp--~il~~~~~~~i~~~l~f~~p---------------~~~~~~ 107 (444)
T PRK09669 49 TMFLVVRVLDAVTDPLMGALVDRTRTRHGQF----RP--YLLWFAIPFGVVCLLTFYTP---------------DFGATG 107 (444)
T ss_pred HHHHHHHHHHHcccceeeEeeecCCCCCCCc----ch--hHHHHHHHHHHHHHHHHhCC---------------CCCcch
Confidence 3445555556677788888877755444332 12 24456666666665443321 000112
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhc-CcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQA-PESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~a-P~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
..+|....+++.+++-.+...+..+...+.. +++.|+..++.-.....+|+.+++.+...+.
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~ 170 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV 170 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888777788888889988887 5567888888888888888888877654443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.044 Score=56.82 Aligned_cols=142 Identities=8% Similarity=-0.034 Sum_probs=72.1
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
.+...++..+...+..|+.+++.|++.+|+ .+.++..+.+++.......... ...
T Consensus 48 ~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~~~--~~~------------ 102 (420)
T PRK09528 48 TGIIFSANSLFALLFQPLYGLISDKLGLKK-----------HLLWIISGLLVLFGPFFIYVFA--PLL------------ 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHHHH--HHH------------
Confidence 356778889999999999999988876542 1222222222222111110000 000
Q ss_pred cchHHH-HHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCC
Q 041163 341 PLTIFI-LLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNN 419 (483)
Q Consensus 341 ~~s~~~-li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~ 419 (483)
..+.++ .+...++.+.+-....+...++..+. + +.+|..+|......++|..+++.+++.+.+. +|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-------~~---- 169 (420)
T PRK09528 103 QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV-S-RRSGFEYGRARMWGSLGWALCAFIAGILFNI-------NP---- 169 (420)
T ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-H-hhccccchhhHHhhhHHHHHHHHHHHHHHhc-------Cc----
Confidence 001111 11122222322222223333333222 2 3467788888888899999999998877642 12
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHh
Q 041163 420 LNVSHLDYYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 420 ~~~~~~~~~f~~~~~l~lv~~l~~~~~ 446 (483)
...|.+.++++++..++++..
T Consensus 170 ------~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 170 ------QINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred ------hHhHHHHHHHHHHHHHHHhcc
Confidence 344566566666555554443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.11 Score=53.09 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=73.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc
Q 041163 297 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPES 376 (483)
Q Consensus 297 ~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~ 376 (483)
.+..+-+.+|+.+++++..+..-... ..+....+...++++.|-.+...+++.++....|++
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAAS------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhh------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 34455688999999999877643321 114445666788999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 377 MKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 377 ~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..+.=+.+....+++|..+||.+++.+..
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88999999999999999999999988775
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0043 Score=64.69 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHH
Q 041163 266 GFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIF 345 (483)
Q Consensus 266 ~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 345 (483)
.+..++-.+..|+++.+.|+...|.+++ +|. +.+|.++.++++.++....... ........
T Consensus 44 ~~~~i~dai~dp~~G~~sDr~~tr~Grr----rp~--~l~g~i~~~~~~~llf~~~p~~-------------~~~~~~~~ 104 (428)
T PF13347_consen 44 LVGRIWDAITDPLIGYLSDRTRTRWGRR----RPW--ILIGAILLALSFFLLFSPPPAG-------------LSFTAKLV 104 (428)
T ss_pred HHHHHhhhhcCCcEEEEEeeeccccccc----ceE--eehhhHHHHHHHHHhhccccch-------------hhhhhHHH
Confidence 3334444555566666655433333222 111 5668888888887776541100 00112456
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHhhcC-cchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 346 ILLPQFVLMGTADAFLEVAKIEFFYDQAP-ESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 346 ~li~~~~l~~igE~l~~p~~~a~i~~~aP-~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
|+...+++..++--+...+..+...+..+ ++.|....+.-.+...+|+.+.+.+...+..
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~ 165 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVS 165 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 77888888899999999999999999998 4689999999999999999877777666653
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.094 Score=53.68 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=75.8
Q ss_pred eeCCCCccchhH---HHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCc
Q 041163 258 KIPPASLTGFVT---LSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIV 334 (483)
Q Consensus 258 ~i~~~~l~~in~---~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (483)
.+++++...+.. +...++...++.+.+++. +.+-..+++++..+-.+..++... +
T Consensus 45 ~LS~~q~~ll~aiPil~GallRl~~g~l~drfG-----------gR~~~~~s~~l~~IP~~~~~~a~~--------~--- 102 (417)
T COG2223 45 GLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG-----------GRKWTILSMLLLLIPCLGLAFAVT--------Y--- 102 (417)
T ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC-----------chHHHHHHHHHHHHHHHHHHHHcc--------C---
Confidence 366666544444 444444445555543333 233456677777777777666541 1
Q ss_pred cCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 335 EKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 335 ~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
-|.|.++..-.+.|++- -....++..+...-||+.+|.++|++. ..++|..+...+...+..
T Consensus 103 -------~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 103 -------PSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred -------CchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 13345555556667665 456778899999999999999999999 888888887777666654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.053 Score=57.44 Aligned_cols=120 Identities=8% Similarity=0.086 Sum_probs=80.2
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+..+..++-.+..|+.+.+.|+.-.|.+++ ++. +.+|.+..++++.++.... +....
T Consensus 45 g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grr----rp~--il~g~i~~~i~~~llf~~p---------------~~~~~ 103 (473)
T PRK10429 45 GTLFLVARIWDAINDPIMGWIVNNTRSRWGKF----KPW--ILIGTLANSVVLFLLFSAH---------------LFEGT 103 (473)
T ss_pred HHHHHHHHHHHHHhhchheeehhcCCCCCCCc----chh--HhhhhHHHHHHHHHHHcCC---------------CCCcc
Confidence 34455666667777888888877643333321 222 4567777777765553321 00011
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhc-CcchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQA-PESMKSLGTSYSMTTLGVGNFLSSFLLST 402 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~a-P~~~~g~~~g~~~l~~~iG~~lg~~l~~~ 402 (483)
...+|+...|++..++--+..++..++..+.+ +++.|....+.-.....+|+.+++.+...
T Consensus 104 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~ 165 (473)
T PRK10429 104 AQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLP 165 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13567888888889999999999999999999 58899999888677777777776655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.034 Score=55.52 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
|..+.+..+++.+.|-.+..+..+.++.+..|++.+++.+++...+.++|..+||.+++.+..
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~ 71 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL 71 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 667888999999999999999999999999999999999999999999999999999997763
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.13 Score=52.57 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcc
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSH 424 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (483)
+|++...++.++......+...++..+..+++.++.+.+.......+|..+|+.+.+.+.+.. +|
T Consensus 98 ~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw--------- 162 (390)
T TIGR02718 98 GWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ--------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH---------
Confidence 454554555666666777777788888888888888888888888889999987777666422 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 041163 425 LDYYYAFFAILNVLNFVFFLVV 446 (483)
Q Consensus 425 ~~~~f~~~~~l~lv~~l~~~~~ 446 (483)
...|.+.+++.++..+..+..
T Consensus 163 -~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 163 -RPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHHc
Confidence 445777777766655554333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.088 Score=57.86 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHhHhh-----hcC-------------CccC----CC----CccchHH-HHH
Q 041163 300 LQRMGIGLVIHIIIMVIASFTERY----RLSVAK-----DHG-------------IVEK----GQ----QVPLTIF-ILL 348 (483)
Q Consensus 300 ~~ki~~G~~l~~i~~~~~~~~~~~----~~~~~~-----~~~-------------~~~~----~~----~~~~s~~-~li 348 (483)
++-+++|.++++++.++.++.|.. +++... .+. ...+ +. .....+| .++
T Consensus 162 Pr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff 241 (735)
T KOG3626|consen 162 PRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFF 241 (735)
T ss_pred cceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHH
Confidence 556889999999999999887652 222111 000 0000 00 1111233 455
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccC---CCCCcch
Q 041163 349 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILN---NLNVSHL 425 (483)
Q Consensus 349 ~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~ 425 (483)
.+-++.|+|+.-+.+.|.+++-+.+-++.-..+.|+.+.+..+|-++|-+++++....=. | -+... +.+|+.-
T Consensus 242 ~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYv--D--~~~~~~~it~~DPrW 317 (735)
T KOG3626|consen 242 LGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYV--D--FGLSPIGITPTDPRW 317 (735)
T ss_pred HHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeee--c--cccCCCCCCCCCcch
Confidence 677999999999999999999999999999999999999999888888888777653110 0 00000 1123321
Q ss_pred ---HH-HHHHHHHHHHHHHHHHHHhhhcccccc
Q 041163 426 ---DY-YYAFFAILNVLNFVFFLVVAKFYVYKT 454 (483)
Q Consensus 426 ---~~-~f~~~~~l~lv~~l~~~~~~~~~~~~~ 454 (483)
.| -|++.|++++..++-++++=|.+++..
T Consensus 318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 318 IGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 22 377788888888888888777766544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.031 Score=58.39 Aligned_cols=123 Identities=10% Similarity=0.122 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc--h
Q 041163 300 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPES--M 377 (483)
Q Consensus 300 ~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~--~ 377 (483)
.+-+.+|-+++.+|.++++..+ ..+...+..+.+++++|-.++-|+..++..++-|++ .
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 3457889999999999887652 013446677788888999999999999999998876 4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 041163 378 KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTEVS 457 (483)
Q Consensus 378 ~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~~~ 457 (483)
|-...+++++..++|++++|.+.+.+...- .+..-|.+.+.-+..+.+.|++..|++......+
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~ 216 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVP 216 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCC
Confidence 556777888899999999999998887421 1355688888888888888888888877665433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.15 Score=53.78 Aligned_cols=162 Identities=11% Similarity=0.064 Sum_probs=94.0
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
++..+...+...+..|+++.+-.|.. +..+=+..|.+++.+|=++....+.. .+
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~----------~~k~Pli~s~ii~~~g~llY~~l~~~----------------~~ 127 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTG----------SVKKPLIVSFLIAIIGNLLYLALAYV----------------PN 127 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccC----------CcccCHHHHHHHHHHHHHHHHHHHhc----------------cc
Confidence 45566788888999999988732221 11222678999999998887555421 01
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccC-CC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILN-NL 420 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~-~~ 420 (483)
-+.|++..++++.|+|-...... =+++++.+-.+-|.++++.......+|..+||.+...+....+ .+-.|+++ .+
T Consensus 128 ~~~y~mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~--~G~~i~~~~~~ 204 (488)
T KOG2325|consen 128 GVKYLMLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE--KGFMILPGLIF 204 (488)
T ss_pred chHHHHHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC--CceEEcCcceE
Confidence 16788999999999995443332 2344444444445566666666666666666666555543221 11123332 23
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKT 454 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~ 454 (483)
|... .-=++++++.++..+...+..|...+..
T Consensus 205 n~YT--ap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 205 NMYT--APAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred Eecc--hHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 3322 2223456666777766666665544433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.8 Score=44.78 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
|+|.++.-.+.-|+-.+..+......+.+..|++.|-..||.-...-++|..++++++-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56666666777889999999999999999999999999999999999999999988875544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.15 Score=54.67 Aligned_cols=81 Identities=11% Similarity=0.141 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNV 422 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (483)
|++.+++.-++.|++.......+...+.+..+++.|+.++.+ ......++.+++.+++.+.. +|
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------- 233 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------- 233 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH-------
Confidence 777888889999999999999999999999999999999999 77777888888888777773 35
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 041163 423 SHLDYYYAFFAILNVLNFVF 442 (483)
Q Consensus 423 ~~~~~~f~~~~~l~lv~~l~ 442 (483)
.+++++..+..++..+.
T Consensus 234 ---r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 234 ---RWLFWIISIPSGLFLLL 250 (521)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 55666666665555555
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.092 Score=54.32 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=24.7
Q ss_pred CCCccchhHHHHHHHHHHHhHHHHhhhcc
Q 041163 261 PASLTGFVTLSMLVCVVLYDRYFVRITRR 289 (483)
Q Consensus 261 ~~~l~~in~~~iii~~pl~~~~~~~~~~r 289 (483)
.+.+.+++.+.-++.+|+++.+-||+..|
T Consensus 45 iG~i~s~~~~~~l~~qp~~G~i~Dklg~k 73 (412)
T PF01306_consen 45 IGIIFSAGSLFALLAQPVYGFISDKLGLK 73 (412)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence 35678889999999999999998888765
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.38 Score=50.37 Aligned_cols=120 Identities=8% Similarity=0.084 Sum_probs=68.6
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+..+..+.-.+..|+.+++.|+..+|.+++ ++. +.+|.+...+....+.... .+ ....
T Consensus 47 g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~----~~~--~~~~~~~~~~~~~~~~~~~---------~~-----~~~~ 106 (448)
T PRK09848 47 GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKF----RPF--LLFGTAPLMIFSVLVFWVP---------TD-----WSHS 106 (448)
T ss_pred HHHHHHHHHHHHHhhhhheeeeecCCCCCcCc----hHH--HHHHHHHHHHHHHHHHhCc---------CC-----CCcc
Confidence 45566777888888999999988865543322 222 2334443333332222111 00 0011
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCc-chhhHHHHHHHHHHH-----HHHHHHhhhhh
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPE-SMKSLGTSYSMTTLG-----VGNFLSSFLLS 401 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~-~~~g~~~g~~~l~~~-----iG~~lg~~l~~ 401 (483)
...+|....+++.+++..+..++..+......+. +.|+..++.-....+ ++..++|.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2446677778888999989998888877766554 467777665544333 44444554443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.054 Score=57.46 Aligned_cols=87 Identities=14% Similarity=0.199 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc-ccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG-WALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g-~~~~F~i 112 (483)
+.+.|++.-++.|+..|...+..-++.++..|+++ ...+|++|.......+.+||++.+.+.+..| .|.+|+.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 55668888889999999999999999999999863 3679999999999999999999999988765 7899988
Q ss_pred hHHHHHHHHHHHHh
Q 041163 113 PTLGLAISIVIFLA 126 (483)
Q Consensus 113 ~~v~~~i~lii~~~ 126 (483)
..+.+++++++++.
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888887754
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.55 Score=49.60 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHH
Q 041163 268 VTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFIL 347 (483)
Q Consensus 268 n~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 347 (483)
-.+..++..|+++.+.|+++||. ++..-.+|.++- -+++.+ ..||.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~--------~L~~~~~~~~l~---~~~~~~-----------------------~~~~~ 116 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKV--------VLLLPLFGTILP---ALCLLF-----------------------QGYWF 116 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhh--------hHHHHHHHHHHh---HHHHHH-----------------------HHHHH
Confidence 36778889999999988888762 222222232222 222221 12455
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 348 LPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 348 i~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
++ ..=..-+-..+...+.+++++....+.|....|+...+...+..++|.+++...+
T Consensus 117 ~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 117 FL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred hh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 2222334456677889999999999999999999999999999999999988875
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.63 Score=44.92 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcch
Q 041163 298 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESM 377 (483)
Q Consensus 298 s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~ 377 (483)
.|..-+.+|.++..+|+.+..+.-..+ -...+.|.+....++.+.|.............+.-|+ .
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 445557889999999998876653110 0123555555666777788877777777777888996 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041163 378 KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYV 451 (483)
Q Consensus 378 ~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~ 451 (483)
||.+.|+.-...++++.+-..+...+.+. +.+.++.+++....+..++.....|..+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~~-----------------~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFGD-----------------DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcCC-----------------ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 99999999999999888866665544431 1234555666655555444444555544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.2 Score=41.55 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHH
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV 391 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~i 391 (483)
|+.--.+++++.-..-.+..|..+-+=.++.|++.|+..|-.+-.-..+
T Consensus 343 s~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 343 SPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred CchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence 3333467778887888889999999999999999999999887665544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.3 Score=39.50 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
+.+.+++.-++.|+|+.+.....-.++.+.+.++.+++..|++......+...|.++.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999888888888877665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=93.36 E-value=10 Score=40.15 Aligned_cols=54 Identities=19% Similarity=0.057 Sum_probs=42.0
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHH-HHHHHHHhhhhhh
Q 041163 349 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTL-GVGNFLSSFLLST 402 (483)
Q Consensus 349 ~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~-~iG~~lg~~l~~~ 402 (483)
.+.++.-.++-...-+.-|.++.-.+++.|...-+..-... -+|-.+|+.+.+.
T Consensus 381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~ 435 (472)
T TIGR00769 381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQG 435 (472)
T ss_pred HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHH
Confidence 36677788888888999999999999999999988766543 3777777665544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.73 Score=48.42 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc-hhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPES-MKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNL 420 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~-~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~ 420 (483)
.+..|....|.+++++--++..+..++.....+.. .|....+.......+|+.+...+...+....+.+
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~---------- 179 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG---------- 179 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------
Confidence 36678888999999999999999999988887654 7999999999999999998888877666433211
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 041163 421 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 452 (483)
Q Consensus 421 ~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~ 452 (483)
.+...++.....+++++.+.++++.+..+.
T Consensus 180 --~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 180 --DKALGYQGTALVLGVIGVILLLFCFFNVKE 209 (467)
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 101234455555666666666666555433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.4 Score=44.94 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 041163 346 ILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKT 407 (483)
Q Consensus 346 ~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 407 (483)
..+-+|.+.+.---.....++++.++.+|+...|++|.+.+...++|+..=..++..+.+..
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 34456788777777888999999999999999999999999888888776666666665543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.49 Score=49.25 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=98.1
Q ss_pred eCCCCccchhHHH---HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCcc
Q 041163 259 IPPASLTGFVTLS---MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVE 335 (483)
Q Consensus 259 i~~~~l~~in~~~---iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (483)
.|+...+.+|... .++.+.+++++-|+++||+ .+..-++++.++-++.++.. +
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-----------vYG~~liImIi~t~~~~~s~----------~--- 136 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK-----------VYGKELIIMIICSALSGLSV----------G--- 136 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----------hhhHHHHHHHHHHHHhccCC----------C---
Confidence 6777777777655 4566777888877777763 12334444444444333321 0
Q ss_pred CCCCccc-hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccc
Q 041163 336 KGQQVPL-TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKG 414 (483)
Q Consensus 336 ~~~~~~~-s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~ 414 (483)
.+.+. -.+|+...-+++|+|-..=+|.+-+..+..+-++.||..++....++++|...|+.+.-.+....+.-
T Consensus 137 --~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~---- 210 (538)
T KOG0252|consen 137 --TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI---- 210 (538)
T ss_pred --CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc----
Confidence 01121 23577777799999999999999999999999999999999999999888888877665554322210
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHH
Q 041163 415 WILNNLNVSHLDYYYAFFAILNVLNFVF 442 (483)
Q Consensus 415 ~~~~~~~~~~~~~~f~~~~~l~lv~~l~ 442 (483)
+++.-...|++..|-+.-+++++-+++
T Consensus 211 -~~~~~~~~~ld~vWRl~~glg~vpa~~ 237 (538)
T KOG0252|consen 211 -FNGPSTYPHLDGVWRIIFGLGAVPALL 237 (538)
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 000011246788887665555544433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.78 E-value=2 Score=44.98 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhc---Ccchhh
Q 041163 303 MGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQA---PESMKS 379 (483)
Q Consensus 303 i~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~a---P~~~~g 379 (483)
+.+|.++.+++.+.++..... ..+........++.++|..+.....-+.+.+.+ |++ +|
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g 123 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG 123 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence 566766666666555554210 112233334445556666666555555555444 555 88
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 380 LGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 380 ~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..++..+....+|+.++..++|...+
T Consensus 124 ~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 124 DLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999988775
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=90.89 E-value=6 Score=41.00 Aligned_cols=84 Identities=8% Similarity=0.072 Sum_probs=55.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+.++.++.-++..|+.+.+-|+..+ ..+-+.+..++.++.+......+
T Consensus 40 G~l~a~~~~~~i~~~~~~g~~aDr~~~----------~~~~l~~~~l~~~~~~~~~~~~~-------------------- 89 (400)
T PF03825_consen 40 GILLAVGPLARIVSPPFWGAIADRFGS----------AKRILALLSLLSALALLLLAFSS-------------------- 89 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh----------HHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 456777888888888888888665422 23334455555555444433322
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPES 376 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~ 376 (483)
+.|+++..+++..+...-+.|...+...+...++
T Consensus 90 -~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~ 123 (400)
T PF03825_consen 90 -SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR 123 (400)
T ss_pred -cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Confidence 5667777777778777777888888888888743
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.52 Score=51.10 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=50.9
Q ss_pred HHHHHHhhhcchhHHHHHHhhccc-CCCCCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHH
Q 041163 228 MFVPSTMLAQINTLFVKQGTTLDR-AIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIG 306 (483)
Q Consensus 228 ~~~~~~~y~q~~t~~~~~~~~~~~-~~~~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G 306 (483)
.++.|..+.|....++.+..-+.. +-. ||.+-.+..+..|.+.++++.+....+.++. ++-..+..++
T Consensus 194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~----------p~gsp~t~i~ 262 (571)
T KOG1237|consen 194 SFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYKK----------PRGSPKTRIG 262 (571)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEeeC----------CCCCchhHHH
Confidence 455677777766677666544443 223 6888889999999999999988665543222 1222556667
Q ss_pred HHHHHHHHHHH
Q 041163 307 LVIHIIIMVIA 317 (483)
Q Consensus 307 ~~l~~i~~~~~ 317 (483)
-++.+...-.-
T Consensus 263 ~Vlvaa~~k~~ 273 (571)
T KOG1237|consen 263 QVLVAAAFKRK 273 (571)
T ss_pred HHHHHHHHHHh
Confidence 77766666553
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=90.03 E-value=20 Score=38.07 Aligned_cols=46 Identities=11% Similarity=-0.101 Sum_probs=40.8
Q ss_pred HHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 360 FLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 360 l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
.++-.-++++.+....+.-.+.-++..+..++|..+|+.++..+..
T Consensus 145 vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 145 VLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444778999999999999999999999999999999999888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.0038 Score=65.33 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=74.4
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
.++...+.+.+.++++||.. +.++.++..++.++..+... ..+++++...-
T Consensus 59 ~~~G~~~~g~~~d~~GRk~~-----------~~~~~~~~~i~~~~~~~~~~------------------~~~~~~~~~~R 109 (451)
T PF00083_consen 59 AIVGALIFGFLADRYGRKPA-----------LIISALLMIIGSILIAFAPS------------------YNNFWMLLIGR 109 (451)
T ss_pred hccccccccccccccccccc-----------cccccccccccccccccccc------------------ccccccccccc
Confidence 34444455555555555421 23455666666655554320 02566778888
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTV 403 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~ 403 (483)
++.|+|-....+....++...+|++.||.+.++......+|..++..+.-.+
T Consensus 110 ~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 110 FLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999888776544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.44 E-value=9.2 Score=38.75 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=64.3
Q ss_pred chhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCC-hhhhhhhhhhHHHHH-HHHHHHHHHHhhhhhhhhhcccc--c
Q 041163 32 TLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFE-PKEKAHKFSFFNWWM-FSIFFGTLLGNTALVYIQDDVGW--A 107 (483)
Q Consensus 32 ~~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~-~~er~~r~~~f~~~y-~~iNlG~~ig~~l~~~L~~~~g~--~ 107 (483)
..+.+.+++++++-|+++.....+--+-.-....+.+ ++| ....-|+... +.+.+-++++.+++-++.+..+. .
T Consensus 118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v 195 (354)
T PF05631_consen 118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV 195 (354)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence 3478899999999999999887776664444434332 222 2445555544 34445566666777677766655 7
Q ss_pred ccchhhHHHHHHHHHHHHhcCc
Q 041163 108 LGYGLPTLGLAISIVIFLAGTP 129 (483)
Q Consensus 108 ~~F~i~~v~~~i~lii~~~~~~ 129 (483)
..|..+.+...++.++.....+
T Consensus 196 aPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 196 APFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 8999999998888776655444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.14 E-value=3.6 Score=42.97 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=89.7
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCC-C-C
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKG-Q-Q 339 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 339 (483)
+..+..-|+..++.+|+.+...|+.--|.+++ +|. +..|.++..+++.+.....-...... |++ . .
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR----RPf--I~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~ 137 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR----RPF--ILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPV 137 (498)
T ss_pred cccccccccccceecccccccccccccccccc----cch--HHHhhHHHHHHHhhhhhHhhhhHHhc------CCccccc
Confidence 33466779999999999999988876666544 232 45677777777776665542211111 111 1 2
Q ss_pred ccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhH-HHHHHHHHHHHHHHHHhhhhh
Q 041163 340 VPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSL-GTSYSMTTLGVGNFLSSFLLS 401 (483)
Q Consensus 340 ~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~-~~g~~~l~~~iG~~lg~~l~~ 401 (483)
.+-.+...++.+.+.-++--......=++..+.+-...|-+ .++.+.++.++|+.+|-.++.
T Consensus 138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 23355566777888888887777888888888887776666 999999999999999877765
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=87.08 E-value=41 Score=34.99 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+++++-..-++.|++... -...+++++..+|+++==.+.+..-...-+|..+|+++++.+..
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555666665422 47788999999999988888888888888888888888887774
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.72 E-value=1.6 Score=45.09 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=78.8
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchH
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTI 344 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 344 (483)
.++..+.+.++.|+++.+.|....| .+.+.+...+..++...+.+.. ....+
T Consensus 64 ~aia~llia~LapiLG~iaD~~g~R----------k~~~~~f~~i~i~~~~~L~~i~------------------~~s~~ 115 (438)
T COG2270 64 SAIAGLLIALLAPILGTIADYPGPR----------KKFFGFFTAIGIISTFLLWFIP------------------PGSYL 115 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCc----------chHHHHHHHHHHHHHHHHHHhC------------------CCchH
Confidence 5777888999999999997665544 1224444455555555555542 01255
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhh
Q 041163 345 FILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFL 399 (483)
Q Consensus 345 ~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l 399 (483)
++.+..|++.+++..+......++.-+..+++..++.+++-+-..-+|+.+--.+
T Consensus 116 ~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 116 LLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIF 170 (438)
T ss_pred HHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHH
Confidence 6677788999999999999999999999999999999998887777777665333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.08 E-value=0.74 Score=45.08 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc---ccccch
Q 041163 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG---WALGYG 111 (483)
Q Consensus 35 ~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g---~~~~F~ 111 (483)
...-|+++.++|+...+...+...+++-..|++ +...+|+..|...|+|-.+.|+++|++.+.-| |--.|.
T Consensus 352 ~lsPy~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ff 425 (459)
T KOG4686|consen 352 FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFF 425 (459)
T ss_pred hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHH
Confidence 344478888999998887777888888888875 57889999999999999999999999987533 433444
Q ss_pred hhHHHHH-HHHHHHH
Q 041163 112 LPTLGLA-ISIVIFL 125 (483)
Q Consensus 112 i~~v~~~-i~lii~~ 125 (483)
+....+. ++..+.+
T Consensus 426 l~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 426 LIIGLMALTSVGILF 440 (459)
T ss_pred HHHHHHHHHHHHHHh
Confidence 4444443 3443333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=85.08 E-value=9.1 Score=40.48 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhH---HHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 346 ILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSL---GTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 346 ~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~---~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.+...++.+++.....+..-++..+..+ +.++. .+...+...++|..+|+.+++.+.+
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445778889999999999999999888 43433 4444455566899999999988775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=84.84 E-value=55 Score=34.34 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTV 403 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~ 403 (483)
.+...++...++-=+|--.......-++.+.+|++.||...|+-....++...+.-.++=.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45556666667767777788888899999999999999999999999998888876665433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=84.63 E-value=9.6 Score=39.43 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=59.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcc
Q 041163 297 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPES 376 (483)
Q Consensus 297 ~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~ 376 (483)
.+-..|+.+..+++.+|+++.++.+ ++++-+...++.+++..+--.+.+++...+ |+
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~---------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y-~~- 142 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP---------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFY-GK- 142 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc---------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhc-Cc-
Confidence 5667889999999999998877653 555556666776666666667778876654 43
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 377 MKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 377 ~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
...+.|....+.++.+|+..-..+.
T Consensus 143 ---~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 143 ---SSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred ---cccccccCCcChhhHHHHHHHHHHH
Confidence 3568888888888888887655444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=83.89 E-value=36 Score=36.29 Aligned_cols=54 Identities=15% Similarity=0.027 Sum_probs=44.6
Q ss_pred HHHhHHHHH----HhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 352 VLMGTADAF----LEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 352 ~l~~igE~l----~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
++.-++|+. ++-.-+.++.+....+.-.+.-++..+..++|..+|+.++..+.+
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445554 344568999999999999999999999999999999999988886
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.55 E-value=58 Score=33.06 Aligned_cols=76 Identities=20% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+.+...--....++.|+.+.+.|+++||+ ..++.++-+....+... .
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~---------------~cl~~cily~~scl~k~------------------~ 118 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGSLADRYGRKK---------------ACLLFCILYSLSCLTKH------------------S 118 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchH---------------HHHHHHHHHHHHHHHHh------------------c
Confidence 44555566778899999999998888762 33333333333333320 1
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHH
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFY 370 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~ 370 (483)
-+.+.++..-++.|++.-+....-=+...
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V 147 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMV 147 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14567788889999998888776555443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.70 E-value=12 Score=35.19 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCc-chhhHHHHHHHH-HHHHHHHHHhhhhhhccc
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPE-SMKSLGTSYSMT-TLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~-~~~g~~~g~~~l-~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...+..++++....|...+.+.+..|+ +.++...+.... ...+|..+++.+.+.+..
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666778999999999999999999998 678888888887 577888888876666653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 483 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 4e-07 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 348 bits (896), Expect = e-115
Identities = 75/441 (17%), Positives = 157/441 (35%), Gaps = 38/441 (8%)
Query: 31 STLQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGT 90
+ F+ L+ +A+G+GG KP + + DQFD F+ + F+I FG+
Sbjct: 105 FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGS 161
Query: 91 LLGNTALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVA 150
+ ++ + + G A+ +G+P + + ++ V F G Y H P VI +
Sbjct: 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221
Query: 151 TIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNKAAV----------KTGS 200
+ V + + L A I + + A V
Sbjct: 222 ALLTK-VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280
Query: 201 TNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP 260
V+ + +L ++ + + ++ Q + ++ Q + +
Sbjct: 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK----PQWFE 336
Query: 261 PASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFT 320
PA + L +++ + + R T L++MG G+ I + ++
Sbjct: 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTI 393
Query: 321 ERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSL 380
+ L+IF + + L+ + + +EF Y QAP++MK
Sbjct: 394 QLMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441
Query: 381 GTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNF 440
S+ ++ VGN +V T + + ++V+ + FFA +L
Sbjct: 442 IMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMF--FFAGFAILAA 496
Query: 441 VFFLVVAKFYVYKTEVSDSME 461
+ F + A+ Y + +
Sbjct: 497 IVFALYARSYQMQDHYRQATG 517
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 35 LGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGN 94
A F ++ + +GTG KPN+ T+ +D+ + + A FS F + I G +
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDA-GFSIFVF---GINLGAFIAP 163
Query: 95 TALVYIQDDVGWALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRK 154
+ Q+ G+ + + L +G+ I ++++ G + + + K
Sbjct: 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK 223
Query: 155 W 155
Sbjct: 224 V 224
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 56/454 (12%), Positives = 108/454 (23%), Gaps = 156/454 (34%)
Query: 1 GMI-----VLTLSVSLAGLKPPPCKDINIQDCRKASTLQLGAFFAALYTLAVGTGGTKPN 55
G++ + L V C +Q ++ L + +
Sbjct: 157 GVLGSGKTWVALDV---------CLSYKVQCK----------MDFKIFWLNLKNCNSPET 197
Query: 56 ILTIAADQFDDFEPKEKAHKFSF------FNWWM--FSIFFGTLLGNTALVYIQDDVGWA 107
+L + +P + + + L+ + +V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNV-Q- 254
Query: 108 LGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELY 167
+ K + F K+++ T R V
Sbjct: 255 -------------------------NAK-AWNAFNLSCKILLTT-RFKQVTDFLSAATTT 287
Query: 168 ELDLEAYAQKGKYMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVA 227
+ L+ + + K ++ C + +++L P ++
Sbjct: 288 HISLD----HHSMTLTPDEVKSLLLK----------YLDCRPQ--DLPREVLTTNPRRLS 331
Query: 228 MFVPST--MLAQINTLFVKQGTTLDRAIGSSFK-IPPASLTG-FVTLSMLVCVVLYDRYF 283
+ S LA + L I SS + PA F LS+
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-------PPS 384
Query: 284 VRITRR-----WTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQ 338
I W VI +MV+ + +Y L VEK Q
Sbjct: 385 AHIPTILLSLIWFD---------------VIKSDVMVVVNKLHKYSL--------VEK-Q 420
Query: 339 QVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSF 398
TI I L + +S+ Y++
Sbjct: 421 PKESTISIPSIYLELKVKLE-------------NEYALHRSIVDHYNI------------ 455
Query: 399 LLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFF 432
K + ++L +LD Y+
Sbjct: 456 -------------PKTFDSDDLIPPYLDQYFYSH 476
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.87 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.64 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.45 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.18 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.14 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.72 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.71 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.6 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.5 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.28 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.63 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 95.74 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=213.81 Aligned_cols=384 Identities=20% Similarity=0.316 Sum_probs=227.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.|+|.|...|+..++++|++|+++ |.++.+.+++++.+.++|.++||.+++++.+.+||++.|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 56788899999999999999999999999998753 334567888899999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCccccc----------
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIG---------- 183 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------- 183 (483)
++..++++++++..+++.++++|++++..+..+.+..+++++..... ........+.......+.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCC 263 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhh
Confidence 99888887777665554433333333222222222222221100000 0000000000000000000000
Q ss_pred -------CCcchhH--HHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCC
Q 041163 184 -------STQNLRF--FNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIG 254 (483)
Q Consensus 184 -------~~~~~~~--l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~ 254 (483)
......| ++..+. .+++++.+++|+.+....+++....++..+.|..+.+..+..+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 332 (524)
T 2xut_A 264 AMVLVMGFVGAGASLQLERARK---------SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP-- 332 (524)
T ss_dssp HHHHHHHHHHTGGGTHHHHSCC---------SCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC--
T ss_pred hhhhhhcccccchhhHHhhhhc---------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC--
Confidence 0000011 111100 00111223344555566666667777888888877776665544432
Q ss_pred CCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCc
Q 041163 255 SSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIV 334 (483)
Q Consensus 255 ~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (483)
.+ .+.+.+..++++..++..|+.+++..+..+|++++ .+..+++.+|+++.+++++++.+.+..+
T Consensus 333 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------- 397 (524)
T 2xut_A 333 -QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM---------- 397 (524)
T ss_dssp -SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------
T ss_pred -ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 11 24566777888888888999888866665654333 5667788899999988887765542100
Q ss_pred cCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccc
Q 041163 335 EKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKG 414 (483)
Q Consensus 335 ~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~ 414 (483)
+.....+.+|+++.+++.++++.+..|..++++.+.+|++.||.++|+++...++|+.+|+.+.+.+.+.++ .+
T Consensus 398 --~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~ 471 (524)
T 2xut_A 398 --DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TE 471 (524)
T ss_dssp --TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred --cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence 001124677888999999999999999999999999999999999999999999999999999998875321 13
Q ss_pred cccC-CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 041163 415 WILN-NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTE 455 (483)
Q Consensus 415 ~~~~-~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~ 455 (483)
|.++ +.+.. .+.|++.++++++++++++++.+++++++.
T Consensus 472 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 472 QIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHSCHH--HHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4321 11111 223777888888888888877777665554
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=197.88 Aligned_cols=353 Identities=15% Similarity=0.248 Sum_probs=231.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.|+|.|...|+..++++|++|++++ +|..++++++.+.++|.++||.+++++.+.+||++.|++.
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 567889999999999999999999999999997642 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeec---CCCCC-ccchHHHHHH---------------HHHHhCCcCCCCCcchhhhhhhHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHK---KPTGS-PFTRMAKVIV---------------ATIRKWNVPLPTDPRELYELDLEAY 174 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~---~p~~~-~l~~~~~v~~---------------~a~~~~~~~~~~~~~~l~~~~~~~~ 174 (483)
++..+++++++++.+++..++ +|+.. ...+..+... ....++ .. .+. ......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~-~~--~~~-~~~~~~---- 254 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW-NS--LPA-YINLLT---- 254 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS-CC--TTH-HHHHHH----
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC-cc--ccc-chhhhh----
Confidence 988888877766544433221 11111 1111111000 001100 00 000 000000
Q ss_pred hhcCcccccCCcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhh-cccCC
Q 041163 175 AQKGKYMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTT-LDRAI 253 (483)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~-~~~~~ 253 (483)
..............|+. ......++++.....++++....++..+.+..+.+..+..+ .+.+
T Consensus 255 ---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (491)
T 4aps_A 255 ---------------IVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS- 317 (491)
T ss_dssp ---------------HHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-
T ss_pred ---------------HHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-
Confidence 00000000000000000 00111334444556677777788888888887766544332 2211
Q ss_pred CCCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 041163 254 GSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGI 333 (483)
Q Consensus 254 ~~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~ 333 (483)
..+.+.+.+++.+..++..++.+++.+++.+|. ....+++.+|+++.+++++++.+.....
T Consensus 318 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 378 (491)
T 4aps_A 318 ----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY--------- 378 (491)
T ss_dssp ----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC---------
T ss_pred ----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 145778899999999999999999988876652 4667888999999999988877654210
Q ss_pred ccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcc
Q 041163 334 VEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHK 413 (483)
Q Consensus 334 ~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~ 413 (483)
+.....+.+++++.+++.++|+.+..|..++++.+..|++.||.++|+++....+|+.+++.+.+.+.+..
T Consensus 379 ---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~------ 449 (491)
T 4aps_A 379 ---GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS------ 449 (491)
T ss_dssp ---CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS------
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 00123467788889999999999999999999999999999999999999999999999999988776421
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 041163 414 GWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKT 454 (483)
Q Consensus 414 ~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~ 454 (483)
+...|.+++++++++.++.++..++.+++.
T Consensus 450 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 450 -----------EVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp -----------TTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677888888888888777776655544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=154.13 Aligned_cols=312 Identities=10% Similarity=-0.002 Sum_probs=186.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc-ccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG-WALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g-~~~~F~i 112 (483)
+.+.+++++++.|+|.|...|...++++|++|++ +|.+++++++.+.++|.++||++++++.+.+| |++.|++
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5678889999999999999999999999999864 46789999999999999999999999888898 9999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++..++.++..++..+.+...+. .+ . ... ...+.+. ..++..++-+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~--~~~--~~~~~~~---------~~~~~~~~~~ 242 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRDTPQSCGLPPI-EE---------------Y--KND--YPDDYNE---------KAEQELTAKQ 242 (451)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT---------------T--CCC------------------------CCTH
T ss_pred HHHHHHHHHHHHHhhccCCHhhcCCCCh-hh---------------h--ccc--ccccchh---------hhhccccccc
Confidence 9988777665544333321110000000 00 0 000 0000000 0000000000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeC---CCCccchhH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP---PASLTGFVT 269 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~---~~~l~~in~ 269 (483)
... .+... .+.+ ..+.+.....+..+....+.+..... ...+ .+ .+.+.++..
T Consensus 243 ~~~-------------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g----~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 243 IFM-------------QYVLP-NKLL---WYIAIANVFVYLLRYGILDWSPTYLK---EVKH----FALDKSSWAYFLYE 298 (451)
T ss_dssp HHH-------------HHTSS-CHHH---HHHHHHHHHHHHHHHHHHHHHHHHBT---TBSC----CCHHHHHHHHHHHH
T ss_pred chH-------------HHHHc-CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcC----CCHHHHHHHHHHHH
Confidence 000 00000 1111 11222222222222222222222211 1112 22 244566667
Q ss_pred HHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHH
Q 041163 270 LSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHI-IIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILL 348 (483)
Q Consensus 270 ~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li 348 (483)
+..++..++.+++.+++.+ ...+.+.++.++.. ++++++.+.. ..+.++.+
T Consensus 299 ~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 350 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMNP-------------------AGNPTVDM 350 (451)
T ss_dssp HHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSCC-------------------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHhc-------------------ccCHHHHH
Confidence 7777777777777655411 11122334444433 4444433221 12455666
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHH-HHHHHhhhhhhcccccccCCccccccCCCCCcchHH
Q 041163 349 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV-GNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDY 427 (483)
Q Consensus 349 ~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (483)
...++.+++.....+...+++.+..|++.||+++|+++....+ |..+++.+.+.+.+..+ +..
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g----------------~~~ 414 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG----------------WDG 414 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----------------SHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------cHH
Confidence 7778888888888888999999999999999999999999999 99999999998875321 355
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 041163 428 YYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 428 ~f~~~~~l~lv~~l~~~~~~~ 448 (483)
.|.+.+++.+++.++++...+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777777666544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=132.53 Aligned_cols=268 Identities=10% Similarity=0.034 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh-hccc------
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ-DDVG------ 105 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~-~~~g------ 105 (483)
.+.+.+++++++.|+|.|...|...++++|++|++ +|.++++++..+.++|.++++++++++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 36788899999999999999999999999999875 4577899999999999999999999998 5554
Q ss_pred -------------------ccccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchh
Q 041163 106 -------------------WALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPREL 166 (483)
Q Consensus 106 -------------------~~~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l 166 (483)
|++.|++.++..++..+++++.+.. +.++++++.. +.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~-------------------~~--- 244 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP--ALQSDNHSDA-------------------KQ--- 244 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCTTTCCCCS-------------------ST---
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC--cccccccccc-------------------cc---
Confidence 8999988777666655554442221 1111000000 00
Q ss_pred hhhhhHHHhhcCcccccCCcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 041163 167 YELDLEAYAQKGKYMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQG 246 (483)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~ 246 (483)
.+....+.+.. .+++.....+..++....+.....+.+..+..+.
T Consensus 245 -----------------~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (438)
T 3o7q_A 245 -----------------GSFSASLSRLA------------------RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI 289 (438)
T ss_dssp -----------------TSHHHHHHHHT------------------TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----------------cchhhhHHHHH------------------hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00000000000 0011111111112222222222222222101110
Q ss_pred hhcccCCCCCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041163 247 TTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLS 326 (483)
Q Consensus 247 ~~~~~~~~~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~ 326 (483)
.+.+. ...+.+..+..+..++..++.+++.+++.+ .+-+.++.++.++++++..+.+
T Consensus 290 ~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~~----- 346 (438)
T 3o7q_A 290 PGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAP-----------HKVLAAYALIAMALCLISAFAG----- 346 (438)
T ss_dssp TTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCH-----------HHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHHHHcC-----
Confidence 01110 112345556666667777777777655433 2335556666666665544331
Q ss_pred HhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 327 VAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 327 ~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
+. +.+...++.+++.....|..++.+.+..|++ ++..+++.. ...+|+.++|.+.+.+.+.
T Consensus 347 ----------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 347 ----------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp ----------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred ----------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 22 3344557888899899999999999999987 888888877 6779999999999988864
Q ss_pred c
Q 041163 407 T 407 (483)
Q Consensus 407 ~ 407 (483)
.
T Consensus 408 ~ 408 (438)
T 3o7q_A 408 A 408 (438)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-13 Score=133.66 Aligned_cols=263 Identities=12% Similarity=0.042 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.+++.+...|...+++.|++|++ +|.++++++..+.++|.+++|.+++++.+.+||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 6778889999999999999999999999999865 4678999999999999999999999999889999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..+......+ ++++++++. .. ..
T Consensus 161 ~~~~~~~~~~~~~~~~---~~~~~~~~~---------------------~~------------------~~--------- 189 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMP---ETRPVDAPR---------------------TR------------------LL--------- 189 (375)
T ss_dssp HHHHHHHHCCCCCSSC---CCSTTTCCC---------------------CC------------------TT---------
T ss_pred HHHHHHHHHHHHHHCc---ccCCCCccc---------------------cc------------------HH---------
Confidence 8876665543322222 111110000 00 00
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHH-HHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAM-IPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~-l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
..+ .+... .|.+... +..++....+.......+ .+..+..+.+.. ..+.+..+..+..
T Consensus 190 --------~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~-------~~g~~~~~~~~~~ 248 (375)
T 2gfp_A 190 --------TSY----KTLFG-NSGFNCYLLMLIGGLAGIAAFEACSG-VLMGAVLGLSSM-------TVSILFILPIPAA 248 (375)
T ss_dssp --------TCS----THHHH-HHHHHHHHHHHHHHHHHHHHHHHHCS-CSSHHHHHHHHH-------HHHHHHHTHHHHH
T ss_pred --------HHH----HHHhc-CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHH-------HHHHHHHHHHHHH
Confidence 000 00011 1222211 111111222222222121 111111111110 1223444555555
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVI-HIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
++..++.+++ .+|. .. ++..+..+ ..++.......... ..+.+..+...
T Consensus 249 ~~~~~~~~~l----~~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 298 (375)
T 2gfp_A 249 FFGAWFAGRP----NKRF-------ST--LMWQSVICCLLAGLLMWIPDWFG-----------------VMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHTT----TTHH-------HH--HHHHHHHHHHHTSSSSSHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHH-------HH--HHHHHHHHHHHHHHHHHHHhhhc-----------------cccHHHHHHHH
Confidence 5555555544 2321 11 34455444 33333221111100 01555566778
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
++.+++.....|...+.+.+..| +.||+.+|+.+....+|..+++.+.+.+.+
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999 789999999999999999999999888764
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=118.83 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc--------c
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD--------V 104 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~--------~ 104 (483)
.+.+.++++|++.|+|.|+..|....+++|..|++ +|.+..+++..+..+|.++++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 47889999999999999999999999999999864 467788899999999999999888766542 3
Q ss_pred cccccchhhHHHHHHHHHH
Q 041163 105 GWALGYGLPTLGLAISIVI 123 (483)
Q Consensus 105 g~~~~F~i~~v~~~i~lii 123 (483)
+|++.+.+..+..++.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4gc0_A 198 GWRYMFASECIPALLFLML 216 (491)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred hhHHHhhhhhhhhhhhhhh
Confidence 5666666666654444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-11 Score=125.40 Aligned_cols=138 Identities=11% Similarity=0.025 Sum_probs=94.9
Q ss_pred CccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccc
Q 041163 263 SLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL 342 (483)
Q Consensus 263 ~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
.+.+++.+..++..++.+++.+++.+| +.+.+|.++.+++++...+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~--------------------- 310 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFAT--------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 445566666667777777777665443 224456666666654443221
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHH-HHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.++++...++.+++.....+....++.+..|++.||+.+|+ ++....+|+.++|.+.+.+.+..
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-------------- 376 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------- 376 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--------------
Confidence 444555555667777777777788999999999999999998 58888999999999999776421
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
++...|.+++++++++.++.+...+
T Consensus 377 --g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 377 --GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred --CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1345677777777777776655433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=96.20 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=109.1
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..|+.+++.|++.+| +-+.+|.++.+++.++..+.... .
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----------------~ 116 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------c
Confidence 4566777788888889999988776554 24667888888888777762100 0
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
.++++++...++.+++.....|...+++.+..|++.|+..+|++....++|..+|+.+++.+.+..+ +|
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w------ 185 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------ 185 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH------
Confidence 1667788889999999999999999999999999999999999999999999999999987653210 14
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|++.+++.++..++.++..+.
T Consensus 186 ----~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 186 ----HAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhccC
Confidence 234566666666666655555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=94.71 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=94.3
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..|+.+++.|++.+| +-+.+|.++.+++.++...... .
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------I 114 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------T
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------c
Confidence 4566777778888899999998777654 2367788888888777633210 1
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
.+.++++...++.|+|.....+...+++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 267788888999999999999999999999999999999999999999999999999998887
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.8e-07 Score=92.23 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=110.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHh-hhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVR-ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~-~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
+++.++..+...+..|+.+++.|+ +.+| +-+.+|.++.+++.++..+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 106 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALPF------------------- 106 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 556777888888899999999888 5654 235667777777776665432
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcch--hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESM--KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILN 418 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~--~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~ 418 (483)
+.++++...++.++|+....|...+++.+..|++. |+..++.++...++|..+|+.+++.+.+.. +|
T Consensus 107 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~--- 175 (491)
T 4aps_A 107 --GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY--- 175 (491)
T ss_dssp --STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH---
T ss_pred --hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH---
Confidence 56777888899999999999999999999999988 778888899999999999999999887522 23
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 041163 419 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 452 (483)
Q Consensus 419 ~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~ 452 (483)
...|.+.++..+++.+++++..++..+
T Consensus 176 -------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 -------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 456666677777777666666555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.7e-07 Score=90.47 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=93.6
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..|+.+++.|++.+|+ . +.++.++.+++.+...+.+
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~----~~~~~~~~~~~~~~~~~~~-------------------- 86 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRRP-------V----ILVGMSIFMLATLVAVTTS-------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCCC-------C----CHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCch-------h----HHHHHHHHHHHHHHHHHhc--------------------
Confidence 45667777888888899999987776542 1 2467777777777766654
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...++.+++.....+...+++.+..|++.|+..+|.+.....+|..+++.+++.+.+
T Consensus 87 -~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 87 -SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 667788888999999999999999999999999999999999999999999999999988874
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.8e-06 Score=85.06 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=102.3
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhh-hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRI-TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~-~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
+++.++..+..++..++.+++.|++ .+| +-+.++.++.+++.++..+.+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIFE------------------- 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 4456666777777888888887665 433 235667777777776655431
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHH---HHHHHHHHHHHHhhhhhhcccccccCCcccccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY---SMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWIL 417 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~---~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~ 417 (483)
.+.++++...++.++|+....|...+++.+..|++.|+..++. +....++|..+|+.+++.+.+.. +|
T Consensus 107 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~-- 177 (524)
T 2xut_A 107 -HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA-- 177 (524)
T ss_dssp -SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH--
T ss_pred -ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH--
Confidence 1566777888999999999999999999999999999877776 88899999999999988776421 22
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 418 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 418 ~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.+++.+++++..+
T Consensus 178 --------~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 178 --------AVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHSSSS
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677767666666655544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00052 Score=70.64 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=87.0
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCC----CCc
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKG----QQV 340 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 340 (483)
.+...+..++..++.+++-|+++||. -+.++.++..++-+..++.... ....... ...
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~-----------~l~~~~~l~~i~~i~~a~~~~~-------~~~~~~~~~~~~~~ 122 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISGVGSAWPELG-------FTSINPDNTVPVYL 122 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHCTTTT-------TSCSSSSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHhhh-------hhhhcchhHHHHHH
Confidence 34445556667778888888877752 2456666666666665543100 0000000 001
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..+++.++..-++.|+|+....+....++.+.+|++.||..++++.....+|..++..+......
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 22667788899999999999999999999999999999999999999999999999888766653
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0017 Score=65.71 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHhhhhhhhhhcccccccchhhH
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNW-WMFSIFFGTLLGNTALVYIQDDVGWALGYGLPT 114 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~-~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~ 114 (483)
+.+.+...+.+++.+...+...+++.|.+|++ .|..++++ +..+.++|.+++|.++|++.+.+||+..|.+.+
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 34444455556665555566678888888753 35667777 467778999999999999998889999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041163 115 LGLAISIVIFLAGT 128 (483)
Q Consensus 115 v~~~i~lii~~~~~ 128 (483)
+..+++.++.+...
T Consensus 387 ~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 387 LVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhhh
Confidence 88888877655533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.55 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.7 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.01 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=2.2e-14 Score=144.30 Aligned_cols=316 Identities=10% Similarity=-0.018 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc-ccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD-VGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~-~g~~~~F~i 112 (483)
+.+.+++.+++.+++.|...|...++++|+++++ +|.++++++..+.++|.++++++++.+... .+|+..|.+
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~ 188 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence 5678889999999999999999999999999865 467899999999999999999999876654 489999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++..++.+...+.. |+...... ........ .+..+ .....+.......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------~~~~~~~~--~~~~~------~~~~~~~~~~~~~ 241 (447)
T d1pw4a_ 189 PAFCAILVALFAFAMMRDT----PQSCGLPP---------------IEEYKNDY--PDDYN------EKAEQELTAKQIF 241 (447)
T ss_dssp HHHHHHHHHHHHHHHCCCS----STTTCCCS---------------CTTTCCC---------------------CCTHHH
T ss_pred hhhhHHHHHHHHHHhcccc----hhhcccch---------------hhhhhhhc--ccchh------hccccccchhhHH
Confidence 8887776665554433321 11110000 00000000 00000 0000000000000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCee-eCCCCccchhHHH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFK-IPPASLTGFVTLS 271 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~-i~~~~l~~in~~~ 271 (483)
. ......+.+. .+.......+.......+.+... +....+ +. ...+....+..+.
T Consensus 242 ~----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~ 297 (447)
T d1pw4a_ 242 M----------------QYVLPNKLLW---YIAIANVFVYLLRYGILDWSPTY---LKEVKH--FALDKSSWAYFLYEYA 297 (447)
T ss_dssp H----------------HHTSSCHHHH---HHHHHHHHHHHHHHHHHHHHHHH---BTTBSC--CCHHHHHHHHHHHHHH
T ss_pred H----------------HHHHcCchHH---HHHHHhhhhhhhhhcchhhhhhh---cccccc--cccchhhhhhhcchhh
Confidence 0 0000011111 11111111111111111111111 111111 10 1123345555666
Q ss_pred HHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 272 MLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 272 iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
.++..++.+++.++..++ .......+...+..++.+..... ...+.++.+...
T Consensus 298 ~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 350 (447)
T d1pw4a_ 298 GIPGTLLCGWMSDKVFRG--------NRGATGVFFMTLVTIATIVYWMN-------------------PAGNPTVDMICM 350 (447)
T ss_dssp HHHHHHHHHHHHHHTSTT--------CHHHHHHHHHHHHHHHHHHTTSC-------------------CTTCHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcccc--------ccccccchhHHHHHHHHHHHHhc-------------------ccccHHHHHHHH
Confidence 666667777776665443 11111122222222222111110 122556667777
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHH-HHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHH
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV-GNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYA 430 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 430 (483)
++.+++.....+.....+.+..|++.+|+++|+.+....+ |..+++.+.+.+.+..+ +...|.
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g----------------~~~~~~ 414 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG----------------WDGGFM 414 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----------------SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------hHHHHH
Confidence 8888888888999999999999999999999998887776 56678888888775332 134566
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 041163 431 FFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 431 ~~~~l~lv~~l~~~~~~~~ 449 (483)
+++++++++.++...+.++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 415 VMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666666555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=3.6e-11 Score=117.46 Aligned_cols=116 Identities=9% Similarity=-0.015 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhh
Q 041163 300 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKS 379 (483)
Q Consensus 300 ~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g 379 (483)
.+-+.++.++.+++++...+.+ +.++++...++.+++..+..+...+++.+..|++.||
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 347 (417)
T d1pv7a_ 289 KNALLLAGTIMSVRIIGSSFAT---------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred ccchhhhHHHHHHhhhcccccc---------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH
Confidence 4446667777777766655432 6677788889999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhhhhhcccccccCCccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 041163 380 LGTSYS-MTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 452 (483)
Q Consensus 380 ~~~g~~-~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~ 452 (483)
+.+|+. .+..++|..+++.+.|.+.+..+ +...|+++++++++..++.++..|+-++
T Consensus 348 ~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999975 56778999999999998876432 2456778888888888877777655433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.2e-07 Score=93.91 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=107.8
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..++.+.+.|++.+| +-+.+|+++.+++.++.++.... .
T Consensus 62 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 113 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T 113 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh-----------------h
Confidence 4567777788888899999998877664 23567888888887776655311 1
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
.+.++++...++.++++....+...+++.+..|++.||..+|++.....+|..+++.+.+....... +|
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~w------ 182 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------ 182 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh-----cc------
Confidence 2556778888999999999999999999999999999999999999999999999988877654321 23
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|.+.+.+.++..++.+...+.
T Consensus 183 ----~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 183 ----HAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ----cccchhhhhhHHHHHHHHHHhccc
Confidence 223455566666655555555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00014 Score=69.28 Aligned_cols=90 Identities=8% Similarity=-0.063 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHH-HHHHHHHHHHhhhhhhhhhcccccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWM-FSIFFGTLLGNTALVYIQDDVGWALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y-~~iNlG~~ig~~l~~~L~~~~g~~~~F~i 112 (483)
+.+.+++..++.+++.+...|...+++.|.+|++ .|.++++..+ .+..+|.+++|.+.|++.+.+||+..|++
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~ 384 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 5677788888999999999999999999999865 3567888755 46679999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCc
Q 041163 113 PTLGLAISIVIFLAGTP 129 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~ 129 (483)
.++..++..++.++..+
T Consensus 385 ~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 385 LGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99888877776655433
|