Citrus Sinensis ID: 041487

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
SNFSLQIHDLFRTNMKKVKDCCYKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSIMLLT
Secondary Structure (PSIPRED)
ccccccccHHHHHHccccccccccccccccccHHHccccccccEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHcccccccccEEEEEEEccEEEEEccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHEEEEEEEEEEccEEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccEccEEEEEEcccEEEEEEEcccEEHHHHHccccccccHHHHHHccccHcccHHHHcEcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
SNFSLQIHDLFRTNMKKVKDCCYKVVkktngseqmekVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINiqnepegvpsYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDldlgsfirkhtitsirphikevgspykapesrirssvystphdvwAVGCIFAemvsgkplfpcgkkdhLSLIVRYFTALTNYLVLPCFLSIMLLT
Flexible Loop (DISEMBL)
snfslqihdlfrtnmkkvkdcCYKVVkktngseqmekvkdWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTitsirphikevgspykapesrIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSIMLLT
Low Complexity Region (SEG)
SNFSLQIHDLFRTNMkkvkdccykvvkkTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSIMLLT
Disordered region (IsUnstruct)
****LQIHDLFRTNMKKVKDCCYKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVG*********IRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSIMLL*
Disordered Region (DISOPRED)
******************************************YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSIMLLT
Disordered Region (DISEMBL)
SNFSLQIHDLFRTNMKKVKDCCYKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSIMLLT
Disordered Region (DISPRO)
**************************************KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSI*LL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SNFSLQIHDLFRTNMKKVKDCCYKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLSIMLLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
P34117	292	Cyclin-dependent kinase 5	yes	no	0.711	0.530	0.394	2e-28
Q00526	305	Cyclin-dependent kinase 3	no	no	0.711	0.508	0.392	2e-26
P23437	297	Cyclin-dependent kinase 2	N/A	no	0.715	0.525	0.339	1e-23
Q80YP0	303	Cyclin-dependent kinase 3	yes	no	0.706	0.508	0.350	9e-22
P00546	298	Cyclin-dependent kinase 1	yes	no	0.655	0.479	0.344	1e-21
P24033	302	Cyclin-dependent kinase 1	N/A	no	0.743	0.536	0.351	5e-21
P43063	317	Cyclin-dependent kinase 1	N/A	no	0.729	0.501	0.328	6e-21
Q9DGD3	303	Cyclin-dependent kinase 1	N/A	no	0.747	0.537	0.331	1e-20
Q9DGA2	303	Cyclin-dependent kinase 1	N/A	no	0.747	0.537	0.331	1e-20
Q9DG98	303	Cyclin-dependent kinase 1	N/A	no	0.747	0.537	0.331	1e-20

>sp|P34117|CDK5_DICDI Cyclin-dependent kinase 5 homolog OS=Dictyostelium discoideum GN=cdk5 PE=2 SV=2

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 106/213 (49%), Gaps = 58/213 (27%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EK+G+G +G VYK  N ETG+ VA+K I + +E EGVP   I  +SLLKEL+H NI
Sbjct: 4   YSKIEKLGEGTYGIVYKAKNRETGEIVALKRIRLDSEDEGVPCTAIREISLLKELKHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDL-------GSFIRKHTITS------------------ 137
           VRL DV+ T R + LVFEYLD DL       G  I K TI S                  
Sbjct: 64  VRLHDVIHTERKLTLVFEYLDQDLKKYLDECGGEISKPTIKSFMYQLLKGVAFCHDHRVL 123

Query: 138 ---IRPH-----------------IKEVGSP------------YKAPESRIRSSVYSTPH 165
              ++P                   +  G P            Y+AP+  + S  YSTP 
Sbjct: 124 HRDLKPQNLLINRKGELKLADFGLARAFGIPVRTYSHEVVTLWYRAPDVLMGSRKYSTPI 183

Query: 166 DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           D+W+ GCIFAEM SG+PLFP  G  D L  I +
Sbjct: 184 DIWSAGCIFAEMASGRPLFPGSGTSDQLFRIFK 216

Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 2EC: 2

>sp|Q00526|CDK3_HUMAN Cyclin-dependent kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 59/214 (27%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++ VEKIG+G +G VYK  N ETG+ VA+K I +  E EGVPS  I  +SLLKEL+H NI
Sbjct: 4   FQKVEKIGEGTYGVVYKAKNRETGQLVALKKIRLDLEMEGVPSTAIREISLLKELKHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDL--------GSFIRKHTITS----------------- 137
           VRLLDV+   R +YLVFE+L  DL        GS +  H I S                 
Sbjct: 64  VRLLDVVHNERKLYLVFEFLSQDLKKYMDSTPGSELPLHLIKSYLFQLLQGVSFCHSHRV 123

Query: 138 ----IRPH---IKEVGS--------------P------------YKAPESRIRSSVYSTP 164
               ++P    I E+G+              P            Y+APE  + S  Y+T 
Sbjct: 124 IHRDLKPQNLLINELGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFYTTA 183

Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W++GCIFAEMV+ K LFP   + D L  I R
Sbjct: 184 VDIWSIGCIFAEMVTRKALFPGDSEIDQLFRIFR 217

Serine/threonine-protein kinase that plays a critical role in the control of the eukaryotic cell cycle; involved in G0-G1 and G1-S cell cycle transitions. Interacts with CCNC/cyclin-C during interphase. Phosphorylates histone H1, ATF1, RB1 and CABLES1. ATF1 phosphorylation triggers ATF1 transactivation and transcriptional activities, and promotes cell proliferation and transformation. CDK3/cyclin-C mediated RB1 phosphorylation is required for G0-G1 transition. Promotes G1-S transition probably by contributing to the activation of E2F1, E2F2 and E2F3 in a RB1-independent manner.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 2

>sp|P23437|CDK2_XENLA Cyclin-dependent kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 100/215 (46%), Gaps = 59/215 (27%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N ETG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI----------------------- 138
           IV+LLDV+ T   +YLVFE+L+ DL  F+    I+ I                       
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLNQDLKKFMDGSNISGISLALVKSYLFQLLQGLAFCHSHR 122

Query: 139 ------RPH-----------------IKEVGSPYKAPESRIRSSVYSTPH---------- 165
                 +P                   +  G P +     + +  Y  P           
Sbjct: 123 VLHRDLKPQNLLINSDGAIKLADFGLARAFGVPVRTFTHEVVTLWYRAPEILLGCKFYST 182

Query: 166 --DVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
             D+W++GCIFAEM++ + LFP   + D L  I R
Sbjct: 183 AVDIWSLGCIFAEMITRRALFPGDSEIDQLFRIFR 217

Involved in the control of the cell cycle. Interacts with cyclins A, B, D, or E. Activity of CDK2 is maximal during S phase and G2.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q80YP0|CDK3_MOUSE Cyclin-dependent kinase 3 OS=Mus musculus GN=Cdk3 PE=1 SV=2

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/214 (35%), Positives = 103/214 (48%), Gaps = 60/214 (28%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  +  +SLLKEL+H NI
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKVTGQLVALKKIRLDLEAEGVPSTAVREISLLKELKHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLG---------------------------SFIRKHTI 135
           ++LLDV+   + +Y+VFE+L  DL                            SF   H +
Sbjct: 64  IKLLDVVHREKKLYMVFEFLTQDLKRHMDSSPTSELPLPVVKSYLAQLLEGVSFCHSHRV 123

Query: 136 --TSIRPH-----------------IKEVGSP------------YKAPESRIRSSVYSTP 164
               ++P                   +  G P            Y+APE  + S  YST 
Sbjct: 124 IHRDLKPQNLLLDGLGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFYSTA 183

Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+ ++GCIFAEMV+GK LFP   + D L  I R
Sbjct: 184 VDI-SIGCIFAEMVTGKALFPGDSEIDQLFRIFR 216

Serine/threonine-protein kinase that plays a critical role in the control of the eukaryotic cell cycle; involved in G0-G1 and G1-S cell cycle transitions. Interacts with CCNC/cyclin-C during interphase. Phosphorylates histone H1, ATF1, RB1 and CABLES1. ATF1 phosphorylation triggers ATF1 transactivation and transcriptional activities, and promotes cell proliferation and transformation. CDK3/cyclin-C mediated RB1 phosphorylation is required for G0-G1 transition. Promotes G1-S transition probably by contributing to the activation of E2F1, E2F2 and E2F3 in a RB1-independent manner.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 2

>sp|P00546|CDK1_YEAST Cyclin-dependent kinase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC28 PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 100/206 (48%), Gaps = 63/206 (30%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           NYK +EK+G+G +G VYK L+L  G+    VA+K I +++E EGVPS  I  +SLLKEL+
Sbjct: 7   NYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEGVPSTAIREISLLKELK 66

Query: 99  HDNIVRLLDVLTTGRY-VYLVFEYLDLDLGSFIR-------------------------- 131
            DNIVRL D++ +  + +YLVFE+LDLDL  ++                           
Sbjct: 67  DDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPKDQPLGADIVKKFMMQLCKGIAY 126

Query: 132 --KHTI--TSIRPH-----------------IKEVGSPYKA------------PESRIRS 158
              H I    ++P                   +  G P +A            PE  +  
Sbjct: 127 CHSHRILHRDLKPQNLLINKDGNLKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGG 186

Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
             YST  D W++GCIFAEM + KP+F
Sbjct: 187 KQYSTGVDTWSIGCIFAEMCNRKPIF 212

This protein is essential for the completion of the start, the controlling event, in the cell cycle. More than 200 substrates have been identified.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 2

>sp|P24033|CDK1B_XENLA Cyclin-dependent kinase 1-B OS=Xenopus laevis GN=cdk1-b PE=1 SV=2

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 102/222 (45%), Gaps = 60/222 (27%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EKIG+G +G VYK  +  TG+ VA+K I ++NE EGVPS  I  +SLLKEL+H NI
Sbjct: 4   YTKIEKIGEGTYGVVYKGRHKATGQVVAMKKIRLENEEEGVPSTAIREISLLKELQHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFE--------YLD-LDLGSFIRKHTITS---------------- 137
           V LLDVL     +YL+FE        YLD +  G +I    + S                
Sbjct: 64  VCLLDVLMQDSRLYLIFEFLSMDLKKYLDSIPSGQYIDTMLVKSYLYQILQGIVFCHSRR 123

Query: 138 -----IRPH-----------------IKEVGSP------------YKAPESRIRSSVYST 163
                ++P                   +  G P            Y+A E  + S  YST
Sbjct: 124 VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRASEVLLGSVRYST 183

Query: 164 PHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALTN 204
           P DVW+VG IFAE+ + KPLF    + D L  I R      N
Sbjct: 184 PVDVWSVGTIFAEIATKKPLFHGDSEIDQLFRIFRSLGTPNN 225

Plays a key role in the control of the eukaryotic cell cycle. It is required in higher cells for entry into S-phase and mitosis. Component of the kinase complex that phosphorylates the repetitive C-terminus of RNA polymerase II.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

>sp|P43063|CDK1_CANAL Cyclin-dependent kinase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CDC28 PE=2 SV=1

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 63/222 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKV-AIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           +Y+  EK+G+G +G VYK L+ +   +V A+K I +++E EGVPS  I  +SLLKE++ D
Sbjct: 6   DYQRQEKVGEGTYGVVYKALDTKHNNRVVALKKIRLESEDEGVPSTAIREISLLKEMKDD 65

Query: 101 NIVRLLDVLTTGRY-VYLVFEYLDLDLGSFIR------------------------KHTI 135
           NIVRL D++ +  + +YLVFE+LDLDL  ++                         KH  
Sbjct: 66  NIVRLYDIIHSDSHKLYLVFEFLDLDLKKYMESIPQGVGLGANMIKRFMNQLIRGIKHCH 125

Query: 136 T------SIRPH-----------------IKEVGSPYKA------------PESRIRSSV 160
           +       ++P                   +  G P +A            PE  +    
Sbjct: 126 SHRVLHRDLKPQNLLIDKEGNLKLADFGLARAFGVPLRAYTHEVVTLWYRAPEILLGGKQ 185

Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL 202
           YST  D+W+VGCIFAEM + KPLFP   +  +  I R F  L
Sbjct: 186 YSTGVDMWSVGCIFAEMCNRKPLFPGDSE--IDEIFRIFRIL 225

This protein is essential for the completion of the start, the controlling event, in the cell cycle.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9DGD3|CDK1_ORYLA Cyclin-dependent kinase 1 OS=Oryzias latipes GN=cdk1 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 104/223 (46%), Gaps = 60/223 (26%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y  +EKIG+G +G VYK  +  TG+ VA+K I +++E EGVPS  +  VSLL+EL+H N
Sbjct: 3   DYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPN 62

Query: 102 IVRLLDVLTTGRYVYLVF--------EYLD-LDLGSFIRKHTITS--------------- 137
           +VRLLDVL     +YL+F        +YLD +  G ++    + S               
Sbjct: 63  VVRLLDVLMQESRLYLIFEFLSMDLKKYLDSIPSGQYMDPMLVKSYLYQILEGIYFCHRR 122

Query: 138 ------IRPH-----------------IKEVGSP------------YKAPESRIRSSVYS 162
                 ++P                   +  G P            Y+APE  + S  YS
Sbjct: 123 RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYS 182

Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALTN 204
           TP DVW+ G IFAE+ + KPLF    + D L  I R      N
Sbjct: 183 TPVDVWSTGTIFAELATKKPLFHGDSEIDQLFRIFRTLGTPNN 225

Plays a key role in the control of the eukaryotic cell cycle. It is required in higher cells for entry into S-phase and mitosis. Component of the kinase complex that phosphorylates the repetitive C-terminus of RNA polymerase II. Catalytic component of MPF.

Oryzias latipes (taxid: 8090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q9DGA2|CDK1_ORYJA Cyclin-dependent kinase 1 OS=Oryzias javanicus GN=cdk1 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 104/223 (46%), Gaps = 60/223 (26%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y  +EKIG+G +G VYK  +  TG+ VA+K I +++E EGVPS  +  VSLL+EL+H N
Sbjct: 3   DYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPN 62

Query: 102 IVRLLDVLTTGRYVYLVF--------EYLD-LDLGSFIRKHTITS--------------- 137
           +VRLLDVL     +YL+F        +YLD +  G ++    + S               
Sbjct: 63  VVRLLDVLMQESRLYLIFEFLSMDLKKYLDSIPSGQYMDPMLVKSYLYQILEGIYFCHRR 122

Query: 138 ------IRPH-----------------IKEVGSP------------YKAPESRIRSSVYS 162
                 ++P                   +  G P            Y+APE  + S  YS
Sbjct: 123 RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYS 182

Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALTN 204
           TP DVW+ G IFAE+ + KPLF    + D L  I R      N
Sbjct: 183 TPVDVWSTGTIFAELATKKPLFHGDSEIDQLFRIFRTLGTPNN 225

Plays a key role in the control of the eukaryotic cell cycle. It is required in higher cells for entry into S-phase and mitosis. Component of the kinase complex that phosphorylates the repetitive C-terminus of RNA polymerase II. Catalytic component of MPF.

Oryzias javanicus (taxid: 123683)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q9DG98|CDK1_ORYLU Cyclin-dependent kinase 1 OS=Oryzias luzonensis GN=cdk1 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 104/223 (46%), Gaps = 60/223 (26%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y  +EKIG+G +G VYK  +  TG+ VA+K I +++E EGVPS  +  VSLL+EL+H N
Sbjct: 3   DYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPN 62

Query: 102 IVRLLDVLTTGRYVYLVF--------EYLD-LDLGSFIRKHTITS--------------- 137
           +VRLLDVL     +YL+F        +YLD +  G ++    + S               
Sbjct: 63  VVRLLDVLMQESRLYLIFEFLSMDLKKYLDSIPSGQYMDPMLVKSYLYQILEGIYFCHRR 122

Query: 138 ------IRPH-----------------IKEVGSP------------YKAPESRIRSSVYS 162
                 ++P                   +  G P            Y+APE  + S  YS
Sbjct: 123 RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYS 182

Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALTN 204
           TP DVW+ G IFAE+ + KPLF    + D L  I R      N
Sbjct: 183 TPVDVWSTGTIFAELATKKPLFHGDSEIDQLFRIFRTLGTPNN 225

Plays a key role in the control of the eukaryotic cell cycle. It is required in higher cells for entry into S-phase and mitosis. Component of the kinase complex that phosphorylates the repetitive C-terminus of RNA polymerase II. Catalytic component of MPF.

Oryzias luzonensis (taxid: 104659)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
334323158	248	PREDICTED: cyclin-dependent kinase 3-lik	0.711	0.625	0.484	2e-30
194037512	241	PREDICTED: cyclin-dependent kinase 2 iso	0.715	0.647	0.5	2e-30
348508000	241	PREDICTED: cyclin-dependent kinase 2-lik	0.715	0.647	0.481	1e-29
291235181	243	PREDICTED: cell division cycle 2-like is	0.655	0.588	0.482	9e-28
403297079	351	PREDICTED: cyclin-dependent kinase 2 [Sa	0.715	0.444	0.448	7e-27
330840804	292	protein serine/threonine kinase [Dictyos	0.711	0.530	0.394	9e-27
340717613	241	PREDICTED: cyclin-dependent kinase 1-lik	0.715	0.647	0.446	1e-26
327264997	325	PREDICTED: cyclin-dependent kinase 3-lik	0.834	0.56	0.366	1e-26
380030750	241	PREDICTED: cyclin-dependent kinase 1-lik	0.743	0.672	0.436	1e-26
66805759	292	protein serine/threonine kinase [Dictyos	0.711	0.530	0.394	1e-26

>gi|334323158|ref|XP_003340355.1| PREDICTED: cyclin-dependent kinase 3-like isoform 2 [Monodelphis domestica]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++ VEKIG+G +G VYK  N +TG+ VA+K I + +E EGVPS  I  +SLLKEL+H NI
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKQTGQLVALKKIRLDSETEGVPSTAIREISLLKELKHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPH-IKEVGSPYKAPESRIRSSVY 161
           VRLLDV+ + + +YLVFE+L  DL  ++     T +  H +K V   Y+APE  +    Y
Sbjct: 64  VRLLDVVHSEKKLYLVFEFLSQDLKKYMDSAAATELPLHLVKVVTLWYRAPEILLGCKFY 123

Query: 162 STPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           ST  DVW++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 124 STAVDVWSIGCIFAEMVTRRALFPGDSEIDQLFRIFR 160

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194037512|ref|XP_001929000.1| PREDICTED: cyclin-dependent kinase 2 isoform 2 [Sus scrofa]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIKEVGSPYKAPESRIRSSV 160
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK V   Y+APE  +    
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKVVTLWYRAPEILLGCKY 122

Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 123 YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 160

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348508000|ref|XP_003441543.1| PREDICTED: cyclin-dependent kinase 2-like isoform 2 [Oreochromis niloticus]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   SFQKVEKIGEGTYGVVYKAKNKVTGETVALKKIRLDTETEGVPSTAIREISLLKELSHPN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIKEVGSPYKAPESRIRSSV 160
           IV+L DV+ T   +YLVFE+L  DL  F+   ++T I  P +K V   Y+APE  +    
Sbjct: 63  IVKLRDVIHTENKLYLVFEFLHQDLKKFMDSSSVTGIPLPLVKVVTLWYRAPEILLGCKY 122

Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 123 YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 160

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291235181|ref|XP_002737516.1| PREDICTED: cell division cycle 2-like isoform 2 [Saccoglossus kowalevskii]

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 2/145 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y  +EKIG+G +G VYK  N +TGK VA+K I +++E EGVPS  I  +SLLKEL+H N
Sbjct: 3   DYVKIEKIGEGTYGVVYKGRNKKTGKLVALKKIRLESEEEGVPSTAIREISLLKELQHPN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPH--IKEVGSPYKAPESRIRSS 159
           IV L DVL     +YLVFE+L +DL  ++       +     +K V   Y+APE  + S 
Sbjct: 63  IVSLQDVLMQEAKLYLVFEFLTMDLKKYMDNIPSGKLMDTGLVKVVTLWYRAPEVLLGSP 122

Query: 160 VYSTPHDVWAVGCIFAEMVSGKPLF 184
            YSTP DVW++GCIF+EM + +PLF
Sbjct: 123 RYSTPVDVWSIGCIFSEMATKRPLF 147

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|403297079|ref|XP_003939416.1| PREDICTED: cyclin-dependent kinase 2 [Saimiri boliviensis boliviensis]

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 101/176 (57%), Gaps = 20/176 (11%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 95  NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 154

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIK----------------- 143
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK                 
Sbjct: 155 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKVMLLISSSLSWTCLGGL 214

Query: 144 -EVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
             V   Y+APE  +    YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 215 MVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 270

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|330840804|ref|XP_003292399.1| protein serine/threonine kinase [Dictyostelium purpureum] gi|325077355|gb|EGC31073.1| protein serine/threonine kinase [Dictyostelium purpureum]

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 106/213 (49%), Gaps = 58/213 (27%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EK+G+G +G VYK  N ETG+ VA+K I + +E EGVP   I  +SLLKEL+H NI
Sbjct: 4   YAKIEKLGEGTYGIVYKAKNRETGEIVALKRIRLDSEDEGVPCTAIREISLLKELKHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDL-------GSFIRKHTITS------------------ 137
           VRL DV+ T R + LVFEYLD DL       G  I K TI S                  
Sbjct: 64  VRLHDVIHTERKLTLVFEYLDQDLKKYLDECGGEISKATIKSFMYQLLKGVAFCHDHRVL 123

Query: 138 ---IRPH-----------------IKEVGSP------------YKAPESRIRSSVYSTPH 165
              ++P                   +  G P            Y+AP+  + S  YSTP 
Sbjct: 124 HRDLKPQNLLINRKGELKLADFGLARAFGIPVRTYSHEVVTLWYRAPDVLMGSRKYSTPI 183

Query: 166 DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           D+W+ GCIFAEM SG+PLFP  G  D L  I +
Sbjct: 184 DIWSAGCIFAEMASGRPLFPGSGTSDQLFRIFK 216

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|340717613|ref|XP_003397275.1| PREDICTED: cyclin-dependent kinase 1-like isoform 2 [Bombus terrestris]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 3/159 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N+  +EKIG+G +G VYK  + +TG+ VA+K I ++++ EG+PS  I  +SLLKEL H N
Sbjct: 3   NFVKIEKIGEGTYGVVYKGKHKKTGEIVAMKKIRLESDDEGIPSTAIREISLLKELPHPN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK-HTITSIRPH-IKEVGSPYKAPESRIRSS 159
           IVRL+DVL     +YL+FEYL +DL  ++    T   + P  +K V   Y+APE  + ++
Sbjct: 63  IVRLMDVLMEETRLYLIFEYLTMDLKKYMDTLGTGKLMEPKMVKVVTLWYRAPEILLGTN 122

Query: 160 VYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            YS   D+W++GCIFAEM + KPLF    + D L  I R
Sbjct: 123 RYSCAIDIWSIGCIFAEMATKKPLFQGDSEIDQLFRIFR 161

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327264997|ref|XP_003217295.1| PREDICTED: cyclin-dependent kinase 3-like [Anolis carolinensis]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/243 (36%), Positives = 121/243 (49%), Gaps = 61/243 (25%)

Query: 24  KVVKKTNGSEQ-MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG 82
           KV+++  G  Q M+  +D  ++ VEKIG+G +G VYK  N +TG+ VA+K I + +E EG
Sbjct: 6   KVIQQEEGRRQRMDTFQD-TFQKVEKIGEGTYGVVYKARNRQTGQLVALKKIRLDSETEG 64

Query: 83  VPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLG--------------- 127
           VPS  I  +SLLKEL+H NIVRLLDV+ + + +YLVFEYL+ DL                
Sbjct: 65  VPSTAIREISLLKELKHPNIVRLLDVIHSQKKLYLVFEYLNQDLKKYMDSSRTGELPMSL 124

Query: 128 ------------SFIRKHTI--TSIRPH---IKEVGS--------------P-------- 148
                       SF   H +    ++P    I E G+              P        
Sbjct: 125 IQSYLYQLLQGVSFCHSHRVIHRDLKPQNLLINETGAIKLADFGLARAFGVPLRTYTHEV 184

Query: 149 ----YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALT 203
               Y+APE  +    YST  D+W++GCIFAEMV+ K LFP   + D L  I R     T
Sbjct: 185 VTLWYRAPEILLGCKYYSTAVDIWSIGCIFAEMVTRKALFPGDSEIDQLFRIFRTLGTPT 244

Query: 204 NYL 206
             L
Sbjct: 245 ESL 247

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380030750|ref|XP_003699005.1| PREDICTED: cyclin-dependent kinase 1-like isoform 2 [Apis florea]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 103/165 (62%), Gaps = 3/165 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N+  +EKIG+G +G VYK  + +TG+ VA+K I ++++ EG+PS  I  +SLLKEL H N
Sbjct: 3   NFVKIEKIGEGTYGVVYKGKHKKTGEIVAMKKIRLESDDEGIPSTAIREISLLKELPHPN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK-HTITSIRPH-IKEVGSPYKAPESRIRSS 159
           IVRL+DVL     +YL+FEYL +DL  ++    T   + P  +K V   Y+APE  + ++
Sbjct: 63  IVRLMDVLMEETRLYLIFEYLTMDLKKYMDNLGTGKLMEPKMVKVVTLWYRAPEILLGAN 122

Query: 160 VYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALT 203
            YS   D+W++GCIFAEM + KPLF    + D L  I R     T
Sbjct: 123 RYSCAIDIWSIGCIFAEMATKKPLFQGDSEIDQLFRIFRILRTPT 167

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66805759|ref|XP_636601.1| protein serine/threonine kinase [Dictyostelium discoideum AX4] gi|161784321|sp|P34117.2|CDK5_DICDI RecName: Full=Cyclin-dependent kinase 5 homolog; AltName: Full=CDC2-like serine/threonine-protein kinase CRP; AltName: Full=Cell division protein kinase 5 gi|60464959|gb|EAL63070.1| protein serine/threonine kinase [Dictyostelium discoideum AX4]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 106/213 (49%), Gaps = 58/213 (27%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EK+G+G +G VYK  N ETG+ VA+K I + +E EGVP   I  +SLLKEL+H NI
Sbjct: 4   YSKIEKLGEGTYGIVYKAKNRETGEIVALKRIRLDSEDEGVPCTAIREISLLKELKHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDL-------GSFIRKHTITS------------------ 137
           VRL DV+ T R + LVFEYLD DL       G  I K TI S                  
Sbjct: 64  VRLHDVIHTERKLTLVFEYLDQDLKKYLDECGGEISKPTIKSFMYQLLKGVAFCHDHRVL 123

Query: 138 ---IRPH-----------------IKEVGSP------------YKAPESRIRSSVYSTPH 165
              ++P                   +  G P            Y+AP+  + S  YSTP 
Sbjct: 124 HRDLKPQNLLINRKGELKLADFGLARAFGIPVRTYSHEVVTLWYRAPDVLMGSRKYSTPI 183

Query: 166 DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           D+W+ GCIFAEM SG+PLFP  G  D L  I +
Sbjct: 184 DIWSAGCIFAEMASGRPLFPGSGTSDQLFRIFK 216

Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
DICTYBASE|DDB_G0288677	292	cdk5 "cyclin-dependent kinase	0.463	0.345	0.504	3.8e-33
TAIR|locus:2099478	294	CDC2 "cell division control 2"	0.385	0.285	0.535	1.3e-32
UNIPROTKB|P29618	294	CDKA-1 "Cyclin-dependent kinas	0.403	0.299	0.511	4.3e-32
UNIPROTKB|P23437	297	cdk2 "Cyclin-dependent kinase	0.444	0.326	0.536	6.9e-32
UNIPROTKB|E2QW70	298	CDK2 "Uncharacterized protein"	0.467	0.342	0.524	6.9e-32
UNIPROTKB|F1SPH6	298	CDK2 "Uncharacterized protein"	0.467	0.342	0.524	6.9e-32
UNIPROTKB|O55076	298	CDK2 "Cyclin-dependent kinase	0.467	0.342	0.524	6.9e-32
UNIPROTKB|Q5E9Y0	298	CDK2 "Cyclin-dependent kinase	0.467	0.342	0.524	8.8e-32
UNIPROTKB|P24941	298	CDK2 "Cyclin-dependent kinase	0.467	0.342	0.524	8.8e-32
UNIPROTKB|A0MSV8	298	cdk2 "Cyclin-dependent kinase	0.467	0.342	0.524	8.8e-32

DICTYBASE|DDB_G0288677 cdk5 "cyclin-dependent kinase 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 236 (88.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 51/101 (50%), Positives = 67/101 (66%)

Query:    43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
             Y  +EK+G+G +G VYK  N ETG+ VA+K I + +E EGVP   I  +SLLKEL+H NI
Sbjct:     4 YSKIEKLGEGTYGIVYKAKNRETGEIVALKRIRLDSEDEGVPCTAIREISLLKELKHPNI 63

Query:   103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
             VRL DV+ T R + LVFEYLD DL  ++ +      +P IK
Sbjct:    64 VRLHDVIHTERKLTLVFEYLDQDLKKYLDECGGEISKPTIK 104

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0006907 "pinocytosis" evidence=IMP

GO:0007049 "cell cycle" evidence=IEA;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IDA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IPI

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2099478 CDC2 "cell division control 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 45/84 (53%), Positives = 62/84 (73%)

Query:    43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
             Y+ VEKIG+G +G VYK  +  T + +A+K I ++ E EGVPS  I  +SLLKE++H NI
Sbjct:     4 YEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHSNI 63

Query:   103 VRLLDVLTTGRYVYLVFEYLDLDL 126
             V+L DV+ + + +YLVFEYLDLDL
Sbjct:    64 VKLQDVVHSEKRLYLVFEYLDLDL 87

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS;IMP

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA;IMP

GO:0009555 "pollen development" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0048229 "gametophyte development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=IGI

GO:0000910 "cytokinesis" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0009574 "preprophase band" evidence=TAS

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

UNIPROTKB|P29618 CDKA-1 "Cyclin-dependent kinase A-1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 229 (85.7 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 45/88 (51%), Positives = 62/88 (70%)

Query:    43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
             Y+  EKIG+G +G VY+  +  T + +A+K I ++ E EGVPS  I  +SLLKE+ H NI
Sbjct:     4 YEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHGNI 63

Query:   103 VRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
             VRL DV+ + + +YLVFEYLDLDL  F+
Sbjct:    64 VRLHDVIHSEKRIYLVFEYLDLDLKKFM 91

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P23437 cdk2 "Cyclin-dependent kinase 2" [Xenopus laevis (taxid:8355)]

 Score = 250 (93.1 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 52/97 (53%), Positives = 67/97 (69%)

Query:    42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             N++ VEKIG+G +G VYK  N ETG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct:     3 NFQKVEKIGEGTYGVVYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query:   102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
             IV+LLDV+ T   +YLVFE+L+ DL  F+    I+ I
Sbjct:    63 IVKLLDVIHTENKLYLVFEFLNQDLKKFMDGSNISGI 99

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2QW70 CDK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 247 (92.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 54/103 (52%), Positives = 68/103 (66%)

Query:    42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct:     3 NFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query:   102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIK 143
             IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK
Sbjct:    63 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK 105

GO:0060968 "regulation of gene silencing" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0035173 "histone kinase activity" evidence=IEA

GO:0032298 "positive regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0000806 "Y chromosome" evidence=IEA

GO:0000805 "X chromosome" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1SPH6 CDK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 247 (92.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 54/103 (52%), Positives = 68/103 (66%)

Query:    42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct:     3 NFQKVEKIGEGTYGVVYKAKNKVTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query:   102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIK 143
             IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK
Sbjct:    63 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK 105

GO:0060968 "regulation of gene silencing" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0035173 "histone kinase activity" evidence=IEA

GO:0032298 "positive regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0000806 "Y chromosome" evidence=IEA

GO:0000805 "X chromosome" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O55076 CDK2 "Cyclin-dependent kinase 2" [Cricetulus griseus (taxid:10029)]

 Score = 247 (92.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 54/103 (52%), Positives = 68/103 (66%)

Query:    42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct:     3 NFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query:   102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIK 143
             IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK
Sbjct:    63 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASAVTGIPLPLIK 105

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0030496 "midbody" evidence=IDA

UNIPROTKB|Q5E9Y0 CDK2 "Cyclin-dependent kinase 2" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 54/103 (52%), Positives = 68/103 (66%)

Query:    42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct:     3 NFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query:   102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIK 143
             IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK
Sbjct:    63 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK 105

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007049 "cell cycle" evidence=ISS

GO:0006813 "potassium ion transport" evidence=ISS

GO:0005667 "transcription factor complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0015030 "Cajal body" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0060968 "regulation of gene silencing" evidence=IEA

GO:0035173 "histone kinase activity" evidence=IEA

GO:0032298 "positive regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0000806 "Y chromosome" evidence=IEA

GO:0000805 "X chromosome" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P24941 CDK2 "Cyclin-dependent kinase 2" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 54/103 (52%), Positives = 68/103 (66%)

Query:    42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct:     3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query:   102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIK 143
             IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK
Sbjct:    63 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK 105

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

GO:0000805 "X chromosome" evidence=IEA

GO:0000806 "Y chromosome" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0032298 "positive regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IDA

GO:0035173 "histone kinase activity" evidence=IDA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IDA;TAS

GO:0007126 "meiosis" evidence=TAS

GO:0051298 "centrosome duplication" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0060968 "regulation of gene silencing" evidence=IDA

GO:0031571 "mitotic G1 DNA damage checkpoint" evidence=TAS

GO:0071732 "cellular response to nitric oxide" evidence=TAS

GO:0005813 "centrosome" evidence=TAS

GO:0015030 "Cajal body" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=NAS

GO:0030332 "cyclin binding" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000085 "G2 phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0007265 "Ras protein signal transduction" evidence=IEP

GO:0016572 "histone phosphorylation" evidence=IDA

UNIPROTKB|A0MSV8 cdk2 "Cyclin-dependent kinase 2" [Capra hircus (taxid:9925)]

 Score = 246 (91.7 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 54/103 (52%), Positives = 68/103 (66%)

Query:    42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct:     3 NFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query:   102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIK 143
             IV+LLDV+ T   +YLVFE+L  DL  F+    +T I  P IK
Sbjct:    63 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK 105

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=ISS

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005667 "transcription factor complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0006813 "potassium ion transport" evidence=ISS

GO:0007049 "cell cycle" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-45
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-37
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-36
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	6e-35
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-34
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-34
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	4e-32
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-30
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	6e-28
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	7e-27
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-25
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-24
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	2e-24
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	3e-24
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	3e-24
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-23
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	3e-23
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-23
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-22
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	1e-21
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-21
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	5e-21
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	6e-21
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	1e-20
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	4e-20
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	9e-20
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-19
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	6e-19
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-18
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	4e-18
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-17
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	3e-17
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	5e-17
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-16
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	3e-16
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	4e-16
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-15
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	2e-15
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-15
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	7e-15
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	8e-15
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	1e-14
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-14
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-14
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-13
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	1e-13
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-13
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	5e-13
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-12
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-12
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-12
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-12
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	3e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-12
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-12
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	5e-12
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-11
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-11
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-11
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-11
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-11
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	4e-11
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	4e-11
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	5e-11
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-10
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	2e-10
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	2e-10
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-10
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-10
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	3e-10
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	4e-10
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	5e-10
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	6e-10
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	6e-10
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	8e-10
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	8e-10
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-09
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-09
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-09
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-09
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	4e-09
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	4e-09
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	4e-09
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	5e-09
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	9e-09
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	1e-08
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	1e-08
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	1e-08
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-08
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-08
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	2e-08
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-08
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-08
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	4e-08
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	4e-08
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	5e-08
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	6e-08
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	6e-08
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	8e-08
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	8e-08
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	8e-08
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	8e-08
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-07
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	1e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-07
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	2e-07
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-07
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	2e-07
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	2e-07
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	2e-07
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	2e-07
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-07
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-07
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	2e-07
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	3e-07
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	3e-07
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-07
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	4e-07
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	4e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	4e-07
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-07
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	4e-07
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	4e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	5e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-07
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	9e-07
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	9e-07
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-06
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-06
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	1e-06
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	3e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-06
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	3e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-06
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	5e-06
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	5e-06
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	5e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	6e-06
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	7e-06
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	8e-06
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	9e-06
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-05
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	1e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	1e-05
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-05
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	2e-05
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	3e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-05
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	3e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	3e-05
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	3e-05
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	4e-05
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	5e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	7e-05
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	9e-05
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-04
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	1e-04
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	1e-04
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	1e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	2e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	2e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	3e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-04
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-04
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-04
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	4e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	5e-04
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	5e-04
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	6e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	7e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	7e-04
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	7e-04
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	7e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	8e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	8e-04
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	8e-04
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	0.001
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	0.001
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	0.001
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.001
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	0.001
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	0.001
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.001
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.001
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.002
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	0.002
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	0.002
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	0.002
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	0.002
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	0.002
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.002
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.002
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.003
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	0.003
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	0.003
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	0.003
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	0.003
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.003
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	0.003
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.003
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	0.004
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	0.004
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	0.004

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score =  152 bits (386), Expect = 2e-45
 Identities = 76/215 (35%), Positives = 104/215 (48%), Gaps = 58/215 (26%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +EK+G+G +G VYK  + +TG+ VA+K I + NE EG+PS  +  +SLLKEL+H NI
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNI 60

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK------------------- 143
           V+LLDV+ T R +YLVFEY D+DL  ++ K         IK                   
Sbjct: 61  VKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRIL 120

Query: 144 --------------------------EVGSPYKA------------PESRIRSSVYSTPH 165
                                       G P +             PE  + S  YST  
Sbjct: 121 HRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAV 180

Query: 166 DVWAVGCIFAEMVSGKPLFPC-GKKDHLSLIVRYF 199
           D+W+VGCIFAEM++GKPLFP   + D L  I +  
Sbjct: 181 DIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQIL 215

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score =  130 bits (330), Expect = 3e-37
 Identities = 74/214 (34%), Positives = 98/214 (45%), Gaps = 60/214 (28%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + KIG+G +G VYK  +  TG+ VAIK I ++ E EG+P   +  + LLKEL H NI
Sbjct: 1   YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNI 60

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK------------------- 143
           ++LLDV      +YLVFE++D DL   I+          IK                   
Sbjct: 61  IKLLDVFRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGIL 120

Query: 144 --------------------------EVGSP------------YKAPESRIRSSVYSTPH 165
                                       GSP            Y+APE  +    YSTP 
Sbjct: 121 HRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPV 180

Query: 166 DVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           D+W+VGCIFAE++S +PLFP GK   D L  I R
Sbjct: 181 DIWSVGCIFAELLSRRPLFP-GKSEIDQLFKIFR 213

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score =  129 bits (325), Expect = 1e-36
 Identities = 75/202 (37%), Positives = 97/202 (48%), Gaps = 58/202 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 60

Query: 102 IVRLLDVLTTGRYVYLVFE--------YLDLDLGSFIRKHTITS---------------- 137
           IV+LLDV+ T   +YLVFE        ++D    S I    I S                
Sbjct: 61  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR 120

Query: 138 -----IRP---------HIK--------EVGSP------------YKAPESRIRSSVYST 163
                ++P          IK          G P            Y+APE  +    YST
Sbjct: 121 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYST 180

Query: 164 PHDVWAVGCIFAEMVSGKPLFP 185
             D+W++GCIFAEMV+ + LFP
Sbjct: 181 AVDIWSLGCIFAEMVTRRALFP 202

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  123 bits (312), Expect = 6e-35
 Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 59/209 (28%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+++EK+G+G FG+VY   + +TGK VAIK+I  +   +     ++  + +LK+L+H NI
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKI-KKDRERILREIKILKKLKHPNI 59

Query: 103 VRLLDVLTTGRYVYLVFEYLD-LDLGSFI-RKHTITS----------------------- 137
           VRL DV      +YLV EY +  DL   + ++  ++                        
Sbjct: 60  VRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKGIV 119

Query: 138 ---IRP---------HIK------------------EVGSP-YKAPESRIRSSVYSTPHD 166
              ++P         H+K                   VG+P Y APE  +    Y    D
Sbjct: 120 HRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPE-VLLGKGYGKAVD 178

Query: 167 VWAVGCIFAEMVSGKPLFPCGKKDHLSLI 195
           +W++G I  E+++GKP FP G    L L 
Sbjct: 179 IWSLGVILYELLTGKPPFP-GDDQLLELF 206

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  122 bits (309), Expect = 2e-34
 Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 58/213 (27%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+++ K+G G FG VYK  +  TGK VA+K++  ++E           + +L+ L H NI
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60

Query: 103 VRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKHTITSIR---------------------- 139
           VRL+D      ++YLV EY +  DL  ++ +    S                        
Sbjct: 61  VRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGII 120

Query: 140 --------------PHIK-------------------EVGSP-YKAPESRIRSSVYSTPH 165
                           +K                    VG+P Y APE  +  + Y    
Sbjct: 121 HRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKV 180

Query: 166 DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           DVW++G I  E+++GKP F      D L LI R
Sbjct: 181 DVWSLGVILYELLTGKPPFSGENILDQLQLIRR 213

Length = 260

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score =  123 bits (310), Expect = 2e-34
 Identities = 72/202 (35%), Positives = 98/202 (48%), Gaps = 59/202 (29%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y  +EKIG+G +G VYK  N +TG+ VA+K I +++E EGVPS  I  +SLLKEL+H N
Sbjct: 1   DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPN 60

Query: 102 IVRLLDVLTTGRYVYLVFE--------YLD-LDLGSFIRKHTITS--------------- 137
           IV L DVL     +YL+FE        YLD L  G ++    + S               
Sbjct: 61  IVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR 120

Query: 138 ----------------------------------IRPHIKEVGSP-YKAPESRIRSSVYS 162
                                             +R +  EV +  Y+APE  + S  YS
Sbjct: 121 RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYS 180

Query: 163 TPHDVWAVGCIFAEMVSGKPLF 184
           TP D+W++G IFAEM + KPLF
Sbjct: 181 TPVDIWSIGTIFAEMATKKPLF 202

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score =  117 bits (295), Expect = 4e-32
 Identities = 51/100 (51%), Positives = 69/100 (69%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ VEKIG+G +G VYK  +  TG+ VA+K I ++ E EGVPS  I  +SLLKEL H NI
Sbjct: 1   YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNI 60

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHI 142
           VRLLDV+ +   +YLVFE+LDLDL  ++    +T + P +
Sbjct: 61  VRLLDVVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPL 100

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score =  113 bits (286), Expect = 1e-30
 Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 60/204 (29%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI---NIQNEPEGVPSYLIAGVSLLKELE 98
            Y+  +K+G+G +  VYK  + ETG+ VAIK I     +   +G+    +  + LL+EL+
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELK 60

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK--------------- 143
           H NI+ LLDV      + LVFE+++ DL   I+  +I      IK               
Sbjct: 61  HPNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHS 120

Query: 144 ------------------------------EVGSP------------YKAPESRIRSSVY 161
                                           GSP            Y+APE    +  Y
Sbjct: 121 NWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHY 180

Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCIFAE++   P  P
Sbjct: 181 GVGVDMWSVGCIFAELLLRVPFLP 204

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score =  106 bits (267), Expect = 6e-28
 Identities = 66/216 (30%), Positives = 95/216 (43%), Gaps = 61/216 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+V+  +G+G +G V KC N  TG+ VAIK      + E V    +  V +L++L H+N
Sbjct: 2   KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHEN 61

Query: 102 IVRLLDVLTTGRYVYLVFEYLD---LDL------G-----------------SFIRKHTI 135
           IV L +       +YLVFEY++   L+L      G                 ++   H I
Sbjct: 62  IVNLKEAFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNI 121

Query: 136 T--SIRPH---IKEVG------------------SPY---------KAPESRIRSSVYST 163
               I+P    + E G                  SP          +APE  +  + Y  
Sbjct: 122 IHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGK 181

Query: 164 PHDVWAVGCIFAEMVSGKPLFPCGKKDH--LSLIVR 197
           P DVWA+GCI AE++ G+PLFP G  D   L LI +
Sbjct: 182 PVDVWAIGCIMAELLDGEPLFP-GDSDIDQLYLIQK 216

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score =  103 bits (259), Expect = 7e-27
 Identities = 48/91 (52%), Positives = 65/91 (71%), Gaps = 4/91 (4%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ VEKIG+G +G VYK  +  T + +A+K I ++ E EGVPS  I  +SLLKE++H NI
Sbjct: 4   YEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           VRL DV+ + + +YLVFEYLDLDL    +KH
Sbjct: 64  VRLQDVVHSEKRLYLVFEYLDLDL----KKH 90

Length = 294

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score =   99 bits (250), Expect = 2e-25
 Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + +IG+G +G+VYK  N +TG+ VA+K I ++NE EG P   I  + LL++L H NI
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNI 60

Query: 103 VRLLDVLT--TGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           VRL +++T      +Y+VFEY+D DL   +    +      IK
Sbjct: 61  VRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIK 103

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 9/112 (8%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE---H 99
           Y+ + +IG+G +G VYK  +L TG+ VA+K + +    EG+P   +  ++LLK+LE   H
Sbjct: 1   YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEH 60

Query: 100 DNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRKHTITSIRPH-IKEV 145
            NIVRLLDV    R      + LVFE++D DL +++ K     + P  IK++
Sbjct: 61  PNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDL 112

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 97.1 bits (242), Expect = 2e-24
 Identities = 42/88 (47%), Positives = 60/88 (68%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +EKIG+G +G V+K  N ET + VA+K + + ++ EGVPS  +  + LLKEL+H N
Sbjct: 1   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 60

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSF 129
           IVRL DVL + + + LVFEY D DL  +
Sbjct: 61  IVRLYDVLHSDKKLTLVFEYCDQDLKKY 88

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 96.8 bits (241), Expect = 3e-24
 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N+K +EK+G+G +  VYK  N  TG+ VA+K I++  E EG PS  I  +SL+KEL+H+N
Sbjct: 1   NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAE-EGTPSTAIREISLMKELKHEN 59

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHT 134
           IVRL DV+ T   + LVFEY+D DL  ++  H 
Sbjct: 60  IVRLHDVIHTENKLMLVFEYMDKDLKKYMDTHG 92

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 97.4 bits (242), Expect = 3e-24
 Identities = 73/213 (34%), Positives = 100/213 (46%), Gaps = 59/213 (27%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EK+G+G +  V+K  +  T   VA+K I +++E EG P   I  VSLLK+L+H NI
Sbjct: 8   YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 66

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDL-------GSFIRKHTIT------------------- 136
           V L D++ T + + LVFEYLD DL       G+ +  H +                    
Sbjct: 67  VTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVL 126

Query: 137 --SIRPH---IKEVGS--------------P------------YKAPESRIRSSVYSTPH 165
              ++P    I E G               P            Y+ P+  + SS YST  
Sbjct: 127 HRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQI 186

Query: 166 DVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVR 197
           D+W VGCIF EM SG+PLFP    +D L LI R
Sbjct: 187 DMWGVGCIFFEMASGRPLFPGSTVEDELHLIFR 219

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 62/217 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ + +I +G +G VY+  + +TG+ VA+K + ++ E EG P   +  +++L +L+H N
Sbjct: 6   EYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPN 65

Query: 102 IVRLLDVL--TTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK---------------- 143
           IV + +V+  +    +Y+V EY++ DL S +       ++  +K                
Sbjct: 66  IVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDN 125

Query: 144 -----------------------------EVGSPYK------------APESRIRSSVYS 162
                                        E GSP K            APE  + +  YS
Sbjct: 126 WILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYS 185

Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           T  D+W+VGCIFAE+++ KPLFP GK   D L+ I +
Sbjct: 186 TAIDMWSVGCIFAELLTKKPLFP-GKSEIDQLNKIFK 221

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 94.3 bits (234), Expect = 3e-23
 Identities = 67/200 (33%), Positives = 94/200 (47%), Gaps = 58/200 (29%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  ++K+G+G +  VYK  +  T   VA+K I +++E EG P   I  VSLLK+L+H NI
Sbjct: 8   YIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 66

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDL-------GSFIRKHTIT------------------- 136
           V L D++ T + + LVFEYLD DL       G+ I  H +                    
Sbjct: 67  VTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVL 126

Query: 137 --SIRPH---IKEVGS--------------P------------YKAPESRIRSSVYSTPH 165
              ++P    I E G               P            Y+ P+  + S+ YST  
Sbjct: 127 HRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQI 186

Query: 166 DVWAVGCIFAEMVSGKPLFP 185
           D+W VGCIF EM +G+PLFP
Sbjct: 187 DMWGVGCIFYEMSTGRPLFP 206

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 92.6 bits (231), Expect = 5e-23
 Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 66/234 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            +   E +G+G FG VY  L+ +TG+ +A+K + +  + E     L   + +L  L+H N
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN 60

Query: 102 IVRLL----DVLTTGRYVYLVF--------------------------------EYL--- 122
           IVR      D       ++L +                                 YL   
Sbjct: 61  IVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSN 120

Query: 123 -----DL----------------DLGSFIRKHTITSIRPHIKEVGSP-YKAPESRIRSSV 160
                D+                D G   R   I +        G+P + APE  IR   
Sbjct: 121 GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEV-IRGEE 179

Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYL-VLPCFLS 213
           Y    D+W++GC   EM +GKP +     + ++ +  Y    +     +P  LS
Sbjct: 180 YGRAADIWSLGCTVIEMATGKPPWSE-LGNPMAAL--YKIGSSGEPPEIPEHLS 230

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 60/188 (31%)

Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDV 108
           +G+G FG VY   + +TGKKVAIK+I  ++    +   L+  + +LK+L H NIV+L  V
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNIVKLYGV 59

Query: 109 LTTGRYVYLVFEYLDL-DLGSFIRKHT--------------------------------- 134
                ++YLV EY +   L   ++++                                  
Sbjct: 60  FEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLK 119

Query: 135 -----ITSIRPHIK-------------------EVGSP-YKAPESRIRSSVYSTPHDVWA 169
                + S    +K                    VG+P Y APE  +    YS   D+W+
Sbjct: 120 PENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWS 179

Query: 170 VGCIFAEM 177
           +G I  E+
Sbjct: 180 LGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 90.3 bits (224), Expect = 1e-21
 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 16/126 (12%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +EKIG+G +G+VYK  +  TGK VA+K   ++ + EG+P   +  +SLL+ L    
Sbjct: 2   AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESI 61

Query: 102 -IVRLLDVLTT----GR-YVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESR 155
            IVRLLDV       G+  +YLVFEYLD DL  F+  +            G     P   
Sbjct: 62  YIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSN----------GRGPGRPLPAKT 111

Query: 156 IRSSVY 161
           I+S +Y
Sbjct: 112 IKSFMY 117

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 58/219 (26%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G+G +G V KC + ETG+ VAIK      + + V    +  + +LK+L H+N+
Sbjct: 3   YENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENL 62

Query: 103 VRLLDVLTTGRYVYLVFEY-----LD--------LDLG-------------SFIRKHTIT 136
           V L++V    + +YLVFE+     LD        LD                F   H I 
Sbjct: 63  VNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNII 122

Query: 137 --SIRPH-----------------IKEVGSP------------YKAPESRIRSSVYSTPH 165
              I+P                   + + +P            Y+APE  +  + Y    
Sbjct: 123 HRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAV 182

Query: 166 DVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALT 203
           D+WAVGC+  EM++G+PLFP     D L  I++    L 
Sbjct: 183 DIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLI 221

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 88.1 bits (219), Expect = 5e-21
 Identities = 63/203 (31%), Positives = 89/203 (43%), Gaps = 63/203 (31%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIK-MINIQNEPEGVPSYLIAGVSLLKELE-HD 100
           YK++ KIG+G F EV K  + +TGK  AIK M       E V +     +  L+ L  H 
Sbjct: 1   YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNL--REIQALRRLSPHP 58

Query: 101 NIVRLLDVL---TTGRYVYLVFEYLDLDLGSFIRKH-------TITS------------- 137
           NI+RL++VL    TGR + LVFE +D++L   I+          + S             
Sbjct: 59  NILRLIEVLFDRKTGR-LALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMH 117

Query: 138 --------IRP--------HIK--EVGS--------PY---------KAPESRIRSSVYS 162
                   I+P         +K  + GS        PY         +APE  +    Y 
Sbjct: 118 RNGIFHRDIKPENILIKDDILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYG 177

Query: 163 TPHDVWAVGCIFAEMVSGKPLFP 185
              D+WAVGC+F E++S  PLFP
Sbjct: 178 PKMDIWAVGCVFFEILSLFPLFP 200

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 87.8 bits (217), Expect = 6e-21
 Identities = 68/214 (31%), Positives = 98/214 (45%), Gaps = 61/214 (28%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  ++K+G+G +  V+K  +  T   VA+K I +++E EG P   I  VSLLK L+H NI
Sbjct: 7   YVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKNLKHANI 65

Query: 103 VRLLDVLTTGRYVYLVFE--------YLDLDLGSFIRKHTIT------------------ 136
           V L D++ T R + LVFE        YLD + G+ +  H +                   
Sbjct: 66  VTLHDIIHTERCLTLVFEYLDSDLKQYLD-NCGNLMSMHNVKIFMFQLLRGLSYCHKRKI 124

Query: 137 ---SIRPH---IKEVGS--------------P------------YKAPESRIRSSVYSTP 164
               ++P    I E G               P            Y+ P+  + S+ YSTP
Sbjct: 125 LHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTP 184

Query: 165 HDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVR 197
            D+W VGCI  EM +G+P+FP    K+ L LI R
Sbjct: 185 IDMWGVGCILYEMATGRPMFPGSTVKEELHLIFR 218

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 31/91 (34%), Positives = 52/91 (57%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            YK++ +IG+G  G V+K  + ETG+ VA+K + ++    G+P+  +  +  L+  +H  
Sbjct: 1   RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPY 60

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
           +V+LLDV   G    LV EY+  DL   +R 
Sbjct: 61  VVKLLDVFPHGSGFVLVMEYMPSDLSEVLRD 91

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 8/111 (7%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + KIGQG FGEV+K  + +T + VA+K + ++NE EG P   +  + +L+ L+H+N+
Sbjct: 14  YEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENV 73

Query: 103 VRLLDVLTT-----GRY---VYLVFEYLDLDLGSFIRKHTITSIRPHIKEV 145
           V L+++  T      RY    YLVFE+ + DL   +    +      IK+V
Sbjct: 74  VNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKV 124

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 85.1 bits (211), Expect = 9e-20
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 8/110 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y+++ K+G+G FGEVYK   ++TG+ VA+K I + NE +G P   +  + +LK+L+H N
Sbjct: 9   DYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPN 68

Query: 102 IVRLLDV--------LTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           +V L+D+              VY+V  Y+D DL   +   ++      IK
Sbjct: 69  VVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIK 118

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 83.0 bits (206), Expect = 4e-19
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           YK +EKIG+G  GEVYK  +  TGK+VAIK + ++ +       +I  + ++K+ +H NI
Sbjct: 21  YKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ---NKELIINEILIMKDCKHPNI 77

Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           V   D    G  +++V EY+D
Sbjct: 78  VDYYDSYLVGDELWVVMEYMD 98

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 82.4 bits (204), Expect = 6e-19
 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           YK ++K+G+G +  VYK  +  TG+ VA+K I +++E EG P   I   SLLK+L+H NI
Sbjct: 7   YKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHE-EGAPFTAIREASLLKDLKHANI 65

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           V L D++ T + + LVFEYLD DL  ++   
Sbjct: 66  VTLHDIIHTKKTLTLVFEYLDTDLKQYMDDC 96

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 34/80 (42%), Positives = 51/80 (63%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++ + IG+G FG VYK LNLETG  VAIK I+++   E     ++  + LLK L+H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+ +  + T   +Y++ EY
Sbjct: 61  IVKYIGSIETSDSLYIILEY 80

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 80.5 bits (198), Expect = 4e-18
 Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 59/218 (27%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y+ +EK+G+G +  VYK  +   GK VA+K+I +Q E EG P   I   SLLK L+H N
Sbjct: 6   SYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEE-EGTPFTAIREASLLKGLKHAN 64

Query: 102 IVRLLDVLTTGRYVYLVFE--------YLDLDLG------------------SFIRKHTI 135
           IV L D++ T   + LVFE        Y+D   G                  S+I +  I
Sbjct: 65  IVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYI 124

Query: 136 --TSIRPH---IKEVGSP--------------------------YKAPESRIRSSVYSTP 164
               ++P    I + G                            Y+ P+  + S+ YST 
Sbjct: 125 LHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTC 184

Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL 202
            D+W VGCIF EM+ G   FP G KD    + R F  L
Sbjct: 185 LDMWGVGCIFVEMIQGVAAFP-GMKDIQDQLERIFLVL 221

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 79.2 bits (195), Expect = 1e-17
 Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 8/98 (8%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE---H 99
           Y+ V +IG G +G VYK  +  +G  VA+K + +Q   +G+P   +  V+LLK LE   H
Sbjct: 2   YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDH 61

Query: 100 DNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
            NIVRL+DV  T R      V LVFE++D DL +++ K
Sbjct: 62  PNIVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDK 99

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 78.3 bits (193), Expect = 3e-17
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 12/112 (10%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           + ++ +IG+G +G+VYK  + +TG+ VA+K + + NE EG P   I  + +L++L H NI
Sbjct: 9   FDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNI 68

Query: 103 VRLLDVLT-----------TGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           V L +++T            G + YLVFEY+D DL   +    +     HIK
Sbjct: 69  VNLKEIVTDKQDALDFKKDKGAF-YLVFEYMDHDLMGLLESGLVHFSEDHIK 119

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+V+E IG+G FG V K      GK +  K I+  N  E     L++ V++L+EL+H NI
Sbjct: 2   YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNI 61

Query: 103 VRLLD--VLTTGRYVYLVFEYLDL-DLGSFIRK 132
           VR  D  +  + + +Y+V EY +  DL   I+K
Sbjct: 62  VRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQK 94

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 75.6 bits (187), Expect = 1e-16
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 47  EKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           +K+G+G FGEVYK         T  KVA+K +      E      +   S++K+L H NI
Sbjct: 5   KKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREE-FLEEASIMKKLSHPNI 63

Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           VRLL V T G  +Y+V EY+   DL  F+RKH
Sbjct: 64  VRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKH 95

Length = 258

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 75.0 bits (184), Expect = 3e-16
 Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 9/99 (9%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAGVSLLKEL---E 98
           Y+ V +IG+G +G+V+K  +L+ G + VA+K + +Q   EG+P   I  V++L+ L   E
Sbjct: 3   YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFE 62

Query: 99  HDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
           H N+VRL DV T  R      + LVFE++D DL +++ K
Sbjct: 63  HPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDK 101

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 74.5 bits (184), Expect = 4e-16
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 29/127 (22%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ--------NEPEGVPSYLIAGVSLL 94
           YKV++++G G FG VY   N ETG+ VAIK +  +        N  E V        SL 
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLRE-V-------KSLR 52

Query: 95  KELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           K  EH NIV+L +V      +Y VFEY++ +L   ++                     ES
Sbjct: 53  KLNEHPNIVKLKEVFRENDELYFVFEYMEGNLYQLMKDRKGKPF-------------SES 99

Query: 155 RIRSSVY 161
            IRS +Y
Sbjct: 100 VIRSIIY 106

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 33/95 (34%), Positives = 60/95 (63%), Gaps = 7/95 (7%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI--NIQNEPEGVPSYLIAGVSLLKEL-EH 99
           Y++++K+G+G +G V+K ++  T + VA+K I    +N  +   ++    +  L+EL +H
Sbjct: 9   YEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTF--REIMFLQELGDH 66

Query: 100 DNIVRLLDVL--TTGRYVYLVFEYLDLDLGSFIRK 132
            NIV+LL+V+     + +YLVFEY++ DL + IR 
Sbjct: 67  PNIVKLLNVIKAENDKDIYLVFEYMETDLHAVIRA 101

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 24/115 (20%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAG------VSLL 94
           Y++++ IG G +G V   ++  TG+KVAIK I+    +        LI        + LL
Sbjct: 2   YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDD--------LIDAKRILREIKLL 53

Query: 95  KELEHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIR-KHTITSIRPHIK 143
           + L H+NI+ LLD+L          VY+V E ++ DL   I+    +T    HI+
Sbjct: 54  RHLRHENIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIKSPQPLTDD--HIQ 106

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 71.4 bits (176), Expect = 4e-15
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+++++IG+G FG+VY       GK   +K I++ N  E      +  V +LK+L H N
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN 60

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKE 144
           I++  +       + +V EY D  DL   I+K           E
Sbjct: 61  IIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQ--KKEGKPFPE 102

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 71.5 bits (175), Expect = 7e-15
 Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y  +EK+G+G +  VYK ++   G+ VA+K+I+++ E EGVP   I   SLLK L+H N
Sbjct: 6   SYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTE-EGVPFTAIREASLLKGLKHAN 64

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           IV L D++ T   +  VFEY+  DL  ++ +H
Sbjct: 65  IVLLHDIIHTKETLTFVFEYMHTDLAQYMIQH 96

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 4/92 (4%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            ++ + +IG+G +G VY+  +  +G+ VA+K + + NE +G+P   +  ++LL  L H N
Sbjct: 8   EFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPN 67

Query: 102 IVRLLDVLTTGRY---VYLVFEYLDLDLGSFI 130
           IV L +V+  G++   ++LV EY + DL S +
Sbjct: 68  IVELKEVV-VGKHLDSIFLVMEYCEQDLASLL 98

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 6/105 (5%)

Query: 43  YKVVEKIGQGVFGEVYKC--LNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEH 99
           Y++   IG+G +G VYK    N + GK+ AIK      E   G+       ++LL+EL+H
Sbjct: 2   YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH 61

Query: 100 DNIVRLLDVL--TTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHI 142
           +N+V L++V      + VYL+F+Y + DL   I+ H   + R  I
Sbjct: 62  ENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHR-QAKRVSI 105

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 69.1 bits (170), Expect = 3e-14
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
            + +K+G+G FGEVYK            +VA+K +      + +    +    ++++L+H
Sbjct: 2   TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEE-FLREARIMRKLDH 60

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            NIV+LL V T    + +V EY+   DL  ++RK+
Sbjct: 61  PNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKN 95

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 68.7 bits (169), Expect = 4e-14
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKK----VAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
            + +K+G+G FGEVYK      G K    VA+K +  ++  E      +    ++++L+H
Sbjct: 2   TLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLK-EDASEQQIEEFLREARIMRKLDH 60

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            N+V+LL V T    +Y+V EY++  DL S++RK+
Sbjct: 61  PNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKN 95

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 67/235 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVP--SYLIAGVSLLKELE 98
           N++  + +GQG FG VY C +++TG+++A+K +    + PE     + L   + LLK L+
Sbjct: 3   NWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQ 62

Query: 99  HDNIVRLLDVLT-------------------------------TGRYVYLVFE---YL-- 122
           H+ IV+    L                                T +Y   + E   YL  
Sbjct: 63  HERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHS 122

Query: 123 ------DL----------------DLGSFIRKHTITSIRPHIKEV-GSPY-KAPESRIRS 158
                 D+                D G+  R  TI S    +K V G+PY  +PE  I  
Sbjct: 123 NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEV-ISG 181

Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLS 213
             Y    DVW+VGC   EM++ KP  P  + + ++ I +  T  TN   LP  +S
Sbjct: 182 EGYGRKADVWSVGCTVVEMLTEKP--PWAEFEAMAAIFKIATQPTNP-QLPSHVS 233

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 14/121 (11%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + KIG+G +G V+KC N ETG+ VAIK      +   +    +  + +LK+L+H N+
Sbjct: 3   YEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNL 62

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYS 162
           V L++V    R ++LVFEY D  + + + K+              P   PE  I+  ++ 
Sbjct: 63  VNLIEVFRRKRKLHLVFEYCDHTVLNELEKN--------------PRGVPEHLIKKIIWQ 108

Query: 163 T 163
           T
Sbjct: 109 T 109

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 47  EKIGQGVFGEVYKCL---NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           +K+G+G FGEVYK           +VA+K +  ++  E      +    ++K+L H N+V
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLK-EDASEEERKDFLKEARVMKKLGHPNVV 59

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGS 147
           RLL V T    +YLV EY++  DL  ++RK       P    +  
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSL 104

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 64/210 (30%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ ++++G G +G V   L+  TG KVAIK +    + E         + LLK ++H+N+
Sbjct: 17  YRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENV 76

Query: 103 VRLLDVLTTG--------------------------------RYVYLVFEYL-------- 122
           + LLDV T                                  R  +LV++ L        
Sbjct: 77  IGLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHA 136

Query: 123 ------DLDLGSF--------------IRKHTITSIRPHIKEVGSPYKAPESRIRSSVYS 162
                 DL  G+               + + T + +  ++  V   Y+APE  +    Y+
Sbjct: 137 AGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYV--VTRWYRAPEVILNWMHYT 194

Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKKDHL 192
              D+W+VGCI AEM++GKPLF     DHL
Sbjct: 195 QTVDIWSVGCIMAEMLTGKPLFK--GHDHL 222

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  YSTP D+W+VGCIFAEMV+ KPLFP
Sbjct: 169 YRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFP 205

Length = 294

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAIK +N+Q +P+     +I  + +++E +H NI
Sbjct: 21  YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPK--KELIINEILVMRENKHPNI 78

Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  LD    G  +++V EYL
Sbjct: 79  VNYLDSYLVGDELWVVMEYL 98

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 48/211 (22%), Positives = 76/211 (36%), Gaps = 61/211 (28%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           + V+ +GQG  G VYK  +  TGK  A+K I++  + E     L+  +  L+  E   +V
Sbjct: 4   ERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEE-FRKQLLRELKTLRSCESPYVV 62

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH---------TITS---------------- 137
           +          + +V EY+D   L   ++K           I                  
Sbjct: 63  KCYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHII 122

Query: 138 ---IRPH---------IK-------------------EVGS-PYKAPESRIRSSVYSTPH 165
              I+P          +K                    VG+  Y +PE RI+   YS   
Sbjct: 123 HRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPE-RIQGESYSYAA 181

Query: 166 DVWAVGCIFAEMVSGK-PLFPCGKKDHLSLI 195
           D+W++G    E   GK P  P G+     L+
Sbjct: 182 DIWSLGLTLLECALGKFPFLPPGQPSFFELM 212

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  YSTP D+W++GCIFAEMV+ +PLFP
Sbjct: 165 YRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFP 201

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLI 195
           Y+APE  + S  Y+   D+W+VGCI AEM+S +PLFP GK     L+LI
Sbjct: 175 YRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFP-GKDYLHQLNLI 222

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++++EKIG+G FGEVYK  +  TGK+VAIK+I ++++ +     +I  + +LK+ +H NI
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEK--KEKIINEIQILKKCKHPNI 59

Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           V+          +++V E+  
Sbjct: 60  VKYYGSYLKKDELWIVMEFCS 80

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 21/37 (56%), Positives = 30/37 (81%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  +RS+ YS+P D+WA+GCI AE+ + +PLFP
Sbjct: 164 YRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFP 200

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  + SS Y+   D+W+VGCIFAE+++ KPLFP G+   D L+LIV
Sbjct: 172 YRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFP-GRDYIDQLNLIV 220

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S+ YSTP D+W+VGCIFAEM   +PLFP
Sbjct: 177 YRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFP 213

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 69/204 (33%)

Query: 48  KIGQGVFGEVYKCLNLETGKKVAIKMINIQ-NEPEGVPSYLIAG-VSLLKELEHDNIV-- 103
           KIG G FG+VY  +NL+TG+ +A+K I IQ N+P+ +    IA  + +L+ L+H N+V  
Sbjct: 7   KIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKE--IADEMKVLELLKHPNLVKY 64

Query: 104 -----------------------------RLLDVLTTGRYVYLVFEYLD----------- 123
                                        R+LD      Y   + E L            
Sbjct: 65  YGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRD 124

Query: 124 -------------LDLGSF-----IRKHTITSIRPHIKE-VGSP-YKAPE--SRIRSSVY 161
                        + LG F     ++ +T T++   ++   G+P Y APE  +  +   +
Sbjct: 125 IKPANIFLDHNGVIKLGDFGCAVKLKNNT-TTMGEEVQSLAGTPAYMAPEVITGGKGKGH 183

Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W++GC+  EM +GK  + 
Sbjct: 184 GRAADIWSLGCVVLEMATGKRPWS 207

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAIK +N+Q +P+     +I  + +++E ++ NI
Sbjct: 21  YTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPK--KELIINEILVMRENKNPNI 78

Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  LD    G  +++V EYL
Sbjct: 79  VNYLDSYLVGDELWVVMEYL 98

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 6/88 (6%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           + ++EK+G+G +G VYK ++ ETG+ VAIK++ ++ + +     +I  +S+LK+ +   I
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQE----IIKEISILKQCDSPYI 60

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
           V+          +++V EY     GS  
Sbjct: 61  VKYYGSYFKNTDLWIVMEY--CGAGSVS 86

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
            YK +E IG G +G V   ++  +GKKVAIK I +  + P      L   + +L+  +HD
Sbjct: 6   RYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTL-RELKILRHFKHD 64

Query: 101 NIVRLLDVLTT----GRYVYLVFEYLDLDLGSFIR 131
           NI+ + D+L       + VY+V + ++ DL   I 
Sbjct: 65  NIIAIRDILRPPGADFKDVYVVMDLMESDLHHIIH 99

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 60.6 bits (147), Expect = 4e-11
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           Y+AP+  + S  YST  D+W+VGCI AEM++G+PLFP    +D L  I R
Sbjct: 166 YRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFR 215

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 60.9 bits (147), Expect = 4e-11
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G V+  +++ TG++VAIK IN+Q +P+     +I  + ++KEL++ NI
Sbjct: 21  YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPK--KELIINEILVMKELKNPNI 78

Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  LD    G  +++V EYL
Sbjct: 79  VNFLDSFLVGDELFVVMEYL 98

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 60.4 bits (146), Expect = 5e-11
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 19  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 76

Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 77  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 136

Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 137 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 196

Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 197 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 232

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ NI
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI 79

Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  LD    G  +++V EYL
Sbjct: 80  VNYLDSYLVGDELWVVMEYL 99

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
           Y+ P+  + S+ YST  D+W VGCIF EM +G+PLFP     +D L  I R
Sbjct: 169 YRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFR 219

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           Y+APE  +  + Y  P DVWA+GC+FAE+++G+PL+P GK   D L LI +
Sbjct: 166 YRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWP-GKSDVDQLYLIRK 215

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ-NEPEGVPSYLIAGVSLLKEL-EH 99
           +Y+++ K+G+G FGEVY   +    K VA+K++  +           +  + +L  L   
Sbjct: 1   SYRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHP 57

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
            NIV+L D       +YLV EY+D   L   ++K 
Sbjct: 58  PNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKI 92

Length = 384

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 52/232 (22%), Positives = 83/232 (35%), Gaps = 76/232 (32%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE---PEGVPSYLIAGVSLLKELEHDNIV 103
           E +G G FG VY+ LNL+ G   A+K +++ ++    +     L   ++LL +L+H NIV
Sbjct: 6   ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIV 65

Query: 104 RLLDVLTTGRYVYLVFEYLDL--------DLGSF----IRK------------HTITSIR 139
           + L        +Y+  E +            GSF    IR             H   ++ 
Sbjct: 66  QYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVH 125

Query: 140 PHIK---------------EVGSPYKAPESRIRSSVYSTPH-----------------DV 167
             IK               + G   +  E     S   +P+                 D+
Sbjct: 126 RDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADI 185

Query: 168 WAVGCIFAEMVSGKP----------LFPCGKK-------DHLSLIVRYFTAL 202
           W++GC   EM +GKP          +F  G+        DHLS   + F   
Sbjct: 186 WSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILK 237

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 5/52 (9%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH---LSLIVR 197
           Y+APE  +  S Y+T  DVW+VGCIFAE++  KPLFP   KD+   L LI  
Sbjct: 174 YRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFP--GKDYVHQLKLITE 223

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 13/107 (12%)

Query: 49  IGQGVFGEVYKCLNLETGKKVAIK---MINIQNEPEGVPSY---------LIAGVSLLKE 96
           +G+G +G+V K  +  TGK VAIK   +I I N+                 +  + ++ E
Sbjct: 17  LGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE 76

Query: 97  LEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           ++H+NI+ L+DV   G ++ LV + +  DL   + +    +    +K
Sbjct: 77  IKHENIMGLVDVYVEGDFINLVMDIMASDLKKVVDRKIRLTE-SQVK 122

Length = 335

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP-CGKKDHLSLI 195
           Y+APE  ++SS Y+TP D+W+VGCIFAE+   +PLF    + D L  I
Sbjct: 172 YRAPEVLLQSS-YATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKI 218

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S+ Y+   D+W+VGCI  EM+ GKPLFP
Sbjct: 178 YRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFP 214

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 57.3 bits (138), Expect = 6e-10
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++V+  +G+G +G V KC + ET + VAIK      E E V    +  + +L+ L+ +NI
Sbjct: 3   FEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENI 62

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVY 161
           V L +       +YLVFEY++ ++   + +               P   P  ++RS +Y
Sbjct: 63  VELKEAFRRRGKLYLVFEYVEKNMLELLEEM--------------PNGVPPEKVRSYIY 107

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIV 196
            Y+APE  +    Y+T  D+W+VGCIFAEM+  + LFP GK     L LI+
Sbjct: 176 WYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFP-GKNYVHQLKLIL 225

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 20/88 (22%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---------IQNEPEGVPSYLIAGVSL 93
           Y+++++IG G +G+VYK  ++ TG+ VAIK+I          IQ E           +S+
Sbjct: 5   YELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQE-----------ISM 53

Query: 94  LKELEHDNIVRLLDVLTTGRYVYLVFEY 121
           LKE  H NIV           +++V EY
Sbjct: 54  LKECRHPNIVAYFGSYLRRDKLWIVMEY 81

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 10/97 (10%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G+V    + +TG+KVAIK ++   Q+      +Y    + LLK ++H+
Sbjct: 17  YQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTY--RELRLLKHMDHE 74

Query: 101 NIVRLLDVLTTG------RYVYLVFEYLDLDLGSFIR 131
           N++ LLDV T        + VYLV   +  DL + ++
Sbjct: 75  NVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVK 111

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINI-----QNEPE---GVPSYLIAGVSLLKELE 98
           E IG+G +G VY  LN+ TG+ +A+K + +              +   L + +  LK+L+
Sbjct: 7   ELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLD 66

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NIV+ L   TT  Y+ +  EY+    +GS +R +
Sbjct: 67  HLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY 102

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 2/42 (4%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  ++S+ Y+TP D+W+VGCIFAEM   KPLF CG  +
Sbjct: 173 YRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLF-CGNSE 212

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
             IG+G FG+V   L    G+KVA+K +  +++     ++L A  S++  L H N+V+LL
Sbjct: 12  ATIGKGEFGDVM--LGDYRGQKVAVKCL--KDDSTAAQAFL-AEASVMTTLRHPNLVQLL 66

Query: 107 DVLTTGRYVYLVFEYL 122
            V+  G  +Y+V EY+
Sbjct: 67  GVVLQGNPLYIVTEYM 82

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYL--IAGVSLLKELEHD 100
           Y  ++ IG+G +G V    N ET +KVAIK I   N  +        +  + LL+ L+H+
Sbjct: 7   YVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIA--NAFDNRIDAKRTLREIKLLRHLDHE 64

Query: 101 NIVRLLDVLT-TGRY----VYLVFEYLDLDLGSFIR 131
           N++ + D++    R     VY+V+E +D DL   IR
Sbjct: 65  NVIAIKDIMPPPHREAFNDVYIVYELMDTDLHQIIR 100

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVL 208
           Y+APE  +    Y    D+W+ GCIFAEM+ GKPLFP   KDH    V  F+ +T+ L  
Sbjct: 171 YRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFP--GKDH----VNQFSIITDLLGT 224

Query: 209 P 209
           P
Sbjct: 225 P 225

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 67/236 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVP--SYLIAGVSLLKELE 98
           N+++ + +GQG FG VY C + +TG+++A+K +    E PE     + L   + LLK L 
Sbjct: 3   NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLL 62

Query: 99  HDNIVRLLDVL---------------------------------TTGRYVYLVFE---YL 122
           H+ IV+    L                                  T +Y   + E   YL
Sbjct: 63  HERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYL 122

Query: 123 ---------------------DLDLGSF---IRKHTITSIRPHIKEV-GSPYKAPESRIR 157
                                ++ LG F    R  TI      +K V G+PY      I 
Sbjct: 123 HSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVIS 182

Query: 158 SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLS 213
              Y    D+W+VGC   EM++ KP  P  + + ++ I +  T  TN  VLP  +S
Sbjct: 183 GEGYGRKADIWSVGCTVVEMLTEKP--PWAEFEAMAAIFKIATQPTN-PVLPPHVS 235

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 139 RPHIKEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD--HLSLI 195
           R +  +V +  Y+APE    +  Y    D+WAVGCIFAE+++G PLFP G+ D   L+++
Sbjct: 155 RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFP-GENDIEQLAIV 213

Query: 196 VRYF 199
            R  
Sbjct: 214 FRTL 217

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 53.6 bits (129), Expect = 9e-09
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVPSYLIAGVSLLKELEHD 100
           N+K+ +KIG+G F  VYK + L  G+ VA+K + I +          +  + LLK+L+H 
Sbjct: 3   NFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHP 62

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHT 134
           N+++ L        + +V E  D  DL   I KH 
Sbjct: 63  NVIKYLASFIENNELNIVLELADAGDLSRMI-KHF 96

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+APE  ++SS Y+TP D+W+VGCIFAEM   KPLF
Sbjct: 175 YRAPEVLLQSS-YATPVDLWSVGCIFAEMFRRKPLF 209

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG---VSLLKELE 98
            Y+ +  IG+G +G V    +  TG KVAIK I     P    ++       + +L+  +
Sbjct: 6   RYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKI----SPFEHQTFCQRTLREIKILRRFK 61

Query: 99  HDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIR 131
           H+NI+ +LD++    +     VY+V E ++ DL   I+
Sbjct: 62  HENIIGILDIIRPPSFESFNDVYIVQELMETDLYKLIK 99

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVY 161
           I ++ D     RY Y  +        +  R+  +TS     K V   Y+APE  + +  Y
Sbjct: 157 ICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTS-----KVVTLWYRAPELLMGAEKY 211

Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCIFAE+++GKPLFP
Sbjct: 212 HFAVDMWSVGCIFAELLTGKPLFP 235

Length = 335

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           EKIG+G FG+VYK + L+   +VA+K       P+    +L     +LK+ +H NIV+L+
Sbjct: 1   EKIGKGNFGDVYKGV-LKGNTEVAVKTCRSTLPPDLKRKFL-QEAEILKQYDHPNIVKLI 58

Query: 107 DVLTTGRYVYLVFEYL-DLDLGSFIRK 132
            V    + +Y+V E +    L +F+RK
Sbjct: 59  GVCVQKQPIYIVMELVPGGSLLTFLRK 85

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
            + + IG G FGEV +  L L  GKK   VAIK +   +  +    +L    S++ + +H
Sbjct: 7   TIEKVIGGGEFGEVCRGRLKL-PGKKEIDVAIKTLKAGSSDKQRLDFL-TEASIMGQFDH 64

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            NI+RL  V+T  R V ++ EY++   L  F+R++
Sbjct: 65  PNIIRLEGVVTKSRPVMIITEYMENGSLDKFLREN 99

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  +  + Y+T  D+WAVGCI AE+++ KPL P GK   + L LI+
Sbjct: 174 YRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLP-GKSEIEQLDLII 222

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 66/227 (29%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVP--SYLIAGVSLLKELE 98
           N++  + +GQG FG VY C +++TG+++A K +    E PE     S L   + LLK L+
Sbjct: 3   NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQ 62

Query: 99  HDNIVRLLDVL---------------------------------TTGRYVYLVFE---YL 122
           H+ IV+    L                                  T +Y   + E   YL
Sbjct: 63  HERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYL 122

Query: 123 ---------------------DLDLGSF---IRKHTITSIRPHIKEV-GSPYKAPESRIR 157
                                ++ LG F    R  TI      I+ V G+PY      I 
Sbjct: 123 HSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVIS 182

Query: 158 SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN 204
              Y    DVW++GC   EM++ KP  P  + + ++ I +  T  TN
Sbjct: 183 GEGYGRKADVWSLGCTVVEMLTEKP--PWAEYEAMAAIFKIATQPTN 227

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 46  VEKIGQGVFGEVYK--CLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
             ++G+G FG+V+   C +LE       VA+K +      +    +      LL   +H+
Sbjct: 10  KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFE-REAELLTNFQHE 68

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           NIV+   V T G    +VFEY++  DL  F+R H
Sbjct: 69  NIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSH 102

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           YK+ E IG+G +G V   ++  TG+KVAIK IN   E     + ++  + LL+ L H +I
Sbjct: 2   YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDI 61

Query: 103 VRLLDVL-----TTGRYVYLVFEYLDLDLGSFIR 131
           V +  ++        + +Y+VFE ++ DL   I+
Sbjct: 62  VEIKHIMLPPSRREFKDIYVVFELMESDLHQVIK 95

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 16/42 (38%), Positives = 28/42 (66%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  + +  Y+   D+WA+GCIFAE+++ +P+F   +  
Sbjct: 181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAK 222

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 58/196 (29%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           + ++E IG+G FGEVYK ++  T + VAIK+I+++   + +   +   +  L +     I
Sbjct: 3   FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEI-EDIQQEIQFLSQCRSPYI 61

Query: 103 VRLLDVLTTGRYVYLVFEYLD----LDL---GSFIRKHTITSIRP--------H------ 141
            +       G  ++++ EY      LDL   G     +    +R         H      
Sbjct: 62  TKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIH 121

Query: 142 --IK----------EV----------------------GSPY-KAPESRIRSSVYSTPHD 166
             IK          +V                      G+P+  APE  I+ S Y    D
Sbjct: 122 RDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEV-IKQSGYDEKAD 180

Query: 167 VWAVGCIFAEMVSGKP 182
           +W++G    E+  G+P
Sbjct: 181 IWSLGITAIELAKGEP 196

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 66/227 (29%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ---NEPEGVPSYLIAGVSLLKELE 98
           N+++ + +G+G FGEVY C + +TG+++A+K +       E     + L   + LLK L 
Sbjct: 3   NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLR 62

Query: 99  HDNIVRLLDVL---------------------------------TTGRYVYLVFE---YL 122
           HD IV+    L                                  T RY   + +   YL
Sbjct: 63  HDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYL 122

Query: 123 ---------------------DLDLGSF---IRKHTITSIRPHIKEV-GSPYKAPESRIR 157
                                ++ LG F    R  TI      IK V G+PY      I 
Sbjct: 123 HSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVIS 182

Query: 158 SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN 204
              Y    DVW+V C   EM++ KP  P  + + ++ I +  T  T 
Sbjct: 183 GEGYGRKADVWSVACTVVEMLTEKP--PWAEYEAMAAIFKIATQPTK 227

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 64/201 (31%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ-----NEPEGVPSYLIAGVSLLKEL 97
           ++++ ++GQG +G+V+     +TG+ VA+K +        NE      +++    +L   
Sbjct: 3   FQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNE----VRHVLTERDILTTT 58

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY---------------LDLDLGSFIRKHTITSI---- 138
           + + +V+LL       Y+YL  EY               L  D   F       ++    
Sbjct: 59  KSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALH 118

Query: 139 ---------RP---------HIK----------------EVGSP-YKAPESRIRSSVYST 163
                    +P         HIK                 VGSP Y APE  +R   Y  
Sbjct: 119 ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEV-LRGKGYDF 177

Query: 164 PHDVWAVGCIFAEMVSGKPLF 184
             D W++GC+  E + G P F
Sbjct: 178 TVDYWSLGCMLYEFLCGFPPF 198

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 6/90 (6%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  ++++G G +G V   ++  TG+KVAIK ++   + E         ++LLK ++H+N+
Sbjct: 17  YTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENV 76

Query: 103 VRLLDVLTTG------RYVYLVFEYLDLDL 126
           + LLDV T+       +  YLV  Y+  DL
Sbjct: 77  IGLLDVFTSAVSGDEFQDFYLVMPYMQTDL 106

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS 193
           Y+APE  +    Y+   D+W+VGCI AE+++GK LFP    DH+ 
Sbjct: 181 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFP--GSDHID 223

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVRY 198
           Y+APE  +    Y+   DVW+VGCI AE++  KP+F  GK   D L+ I++ 
Sbjct: 175 YRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFK-GKDYVDQLNQILQV 225

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD-- 100
           Y+ +E IG+G +G VY+  ++ TG+ VA+K+IN+    + V S +   V+LL +L     
Sbjct: 3   YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDV-SDIQREVALLSQLRQSQP 61

Query: 101 -NIVRLLDVLTTGRYVYLVFEY 121
            NI +       G  ++++ EY
Sbjct: 62  PNITKYYGSYLKGPRLWIIMEY 83

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 51.7 bits (123), Expect = 8e-08
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+V++KIG G FGEV+   +  T +    K I+ +   E   S L+  V++++EL+H NI
Sbjct: 15  YEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNI 74

Query: 103 VRLLDVL--TTGRYVYLVFEYLDL-DLGSFIRK 132
           VR +D       + +Y++ E+ D  DL   I+K
Sbjct: 75  VRYIDRFLNKANQKLYILMEFCDAGDLSRNIQK 107

Length = 1021

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+ PE  + ++ Y    D+W+VGCI AE+  GKP+F 
Sbjct: 167 YRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQ 203

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 67/202 (33%)

Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLD 107
           I +G +G V+      TG   AIK+I   +   +     ++    +L + +   +V+L  
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYY 60

Query: 108 VLTTGRYVYLVFEYL---DL-----DLGSF------------------IRKHTIT--SIR 139
                + +YLV EYL   DL     ++GS                   +  + I    ++
Sbjct: 61  SFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLK 120

Query: 140 P---------HIK---------------------------EVGSP-YKAPESRIRSSVYS 162
           P         H+K                            VG+P Y APE  I    +S
Sbjct: 121 PDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEV-ILGQGHS 179

Query: 163 TPHDVWAVGCIFAEMVSGKPLF 184
              D W++GCI  E + G P F
Sbjct: 180 KTVDWWSLGCILYEFLVGIPPF 201

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++++ ++G G FG+VYK  N ETG   A K+I+ ++E E +  Y++  + +L   +H NI
Sbjct: 7   WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEE-LEDYMVE-IDILASCDHPNI 64

Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+LLD       ++++ E+
Sbjct: 65  VKLLDAFYYENNLWILIEF 83

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ--NEPEGVPSYLIAGVSLLKELEH 99
           ++K  + IG+G F  V      ET K+ AIK+++ +   + + V    I    L +   H
Sbjct: 2   DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGH 61

Query: 100 DNIVRLLDVLTTGRYVYLVFEYL-DLDLGSFIRKH 133
             I++L         +Y V EY  + +L  +IRK+
Sbjct: 62  PGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY 96

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 15/83 (18%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMV-SGKPLFPCGK--KDHLSLIVRYF------ 199
           Y+ P+    + +YST  D+W+ GCIFAE+  +G+PLFP G    D L  I R        
Sbjct: 165 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP-GNDVDDQLKRIFRLLGTPTEE 223

Query: 200 -----TALTNYLVLPCFLSIMLL 217
                + L +Y   P + +   L
Sbjct: 224 SWPGVSKLPDYKPYPMYPATTSL 246

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD--HLSLI 195
           Y+ PE  +    Y+T  D+W +GC+FAEM + +P+   GK D   L LI
Sbjct: 192 YRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQ-GKSDIDQLHLI 239

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 6/43 (13%)

Query: 149 YKAPESRIRSSVYS--TPH-DVWAVGCIFAEMVSGKPLFPCGK 188
           Y+APE  +  S +S  TP  D+W++GCIFAE+++GKPLFP GK
Sbjct: 172 YRAPE--LCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFP-GK 211

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 48  KIGQGVFGEVYKCLNLETG--KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           K+G+G +G VYK    +    K+ A+K I    E  G+       ++LL+EL+H N++ L
Sbjct: 8   KVGRGTYGHVYKAKRKDGKDEKEYALKQI----EGTGISMSACREIALLRELKHPNVIAL 63

Query: 106 LDVLT--TGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVY 161
             V    + R V+L+F+Y + DL   I+ H  +      K    P + P S ++S +Y
Sbjct: 64  QKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRAS------KANKKPMQLPRSMVKSLLY 115

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 18/42 (42%), Positives = 31/42 (73%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  + +  Y+   D+WA+GCIFAE+++ +P+F C ++D
Sbjct: 181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQED 222

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y++P   +  + Y+   D+WA GCIFAEM++GKPLF 
Sbjct: 184 YRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFA 220

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 18/106 (16%)

Query: 45  VVEKIGQGVFGEVYKCLNLETGKK----------------VAIKMINIQNEPEGVPSYLI 88
            VEK+G+G FGEV+ C                        VA+K++   +  +      +
Sbjct: 9   FVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLR-PDASDNAREDFL 67

Query: 89  AGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
             V +L  L   NI RLL V T    + ++ EY++  DL  F++KH
Sbjct: 68  KEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKH 113

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+++E IG G    VY  + L   +KVAIK I+++     V   L   V  + +  H N+
Sbjct: 3   YELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDE-LRKEVQAMSQCNHPNV 61

Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V+       G  ++LV  YL
Sbjct: 62  VKYYTSFVVGDELWLVMPYL 81

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           K+   +G G FGE+ + CL L + ++  VAI  +      +    +L A    L + +H 
Sbjct: 8   KIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFL-AEALTLGQFDHS 66

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLD-LGSFIRKH 133
           NIVRL  V+T G  + +V EY+    L SF+RKH
Sbjct: 67  NIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKH 100

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 18/42 (42%), Positives = 31/42 (73%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  + +  Y+   D+WA+GCIFAE+++ +P+F C ++D
Sbjct: 181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQED 222

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+APE  + S  Y++  D+W+VGCIFAE++  + LF
Sbjct: 170 YRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILF 205

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            ++++ ++G G FG+VYK  + ETG   A K+I I++E E +  +++  + +L E +H N
Sbjct: 6   IWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEE-LEDFMVE-IDILSECKHPN 63

Query: 102 IVRLLDV 108
           IV L + 
Sbjct: 64  IVGLYEA 70

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 16/109 (14%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +  +G G  G V+  ++ +  K+VA+K I +  +P+ V    +  + +++ L+HDNI
Sbjct: 7   YMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLT-DPQSVKH-ALREIKIIRRLDHDNI 64

Query: 103 VRLLDVLTTG--------------RYVYLVFEYLDLDLGSFIRKHTITS 137
           V++ +VL                   VY+V EY++ DL + + +  ++ 
Sbjct: 65  VKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGPLSE 113

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPL 183
           LD G      T   + P++  V   Y+APE  I    Y    D+W+VGCI  EM+ G  L
Sbjct: 160 LDFGLARTAGTSFMMTPYV--VTRYYRAPEV-ILGMGYKENVDIWSVGCIMGEMIRGTVL 216

Query: 184 FPCGKKDHL 192
           FP    DH+
Sbjct: 217 FP--GTDHI 223

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 8/99 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           + K ++++G+G FG+V  C    L   TG++VA+K +N   E +   S     + +L+ L
Sbjct: 5   HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQ-HRSDFEREIEILRTL 63

Query: 98  EHDNIVRLLDVLT--TGRYVYLVFEYLDL-DLGSFIRKH 133
           +H+NIV+   V     GR + L+ EYL    L  ++++H
Sbjct: 64  DHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRH 102

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV--PSYLIAGVSLLKELEH 99
             K+V+K+G G FGEV+         KVAIK +      +G   P   +A  +L+K+L+H
Sbjct: 7   TLKLVKKLGAGQFGEVWMGY-YNGHTKVAIKSLK-----QGSMSPEAFLAEANLMKQLQH 60

Query: 100 DNIVRLLDVLTTGRYVYLVFEYL 122
             +VRL  V+T    +Y++ EY+
Sbjct: 61  PRLVRLYAVVTQ-EPIYIITEYM 82

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 58/201 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           ++KV++K+G+G +G VYK   L   +  A+K +++ +  +      +  + +L  + H N
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRK---------------------------H 133
           I+   +    G  + +V EY    DL   I K                           H
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120

Query: 134 TITSIRPHIKE----VGSPY----------KAPESRIRSSVYSTPH-------------- 165
               +   +K     + +            K  +  +  +   TPH              
Sbjct: 121 EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSY 180

Query: 166 --DVWAVGCIFAEMVSGKPLF 184
             D+W++GC+  EM +  P F
Sbjct: 181 KSDIWSLGCLLYEMATFAPPF 201

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 19/102 (18%)

Query: 42  NYKVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMI------NIQNEPEGVPSYLIAG 90
           N + V  IGQG FG V++      L  E    VA+KM+      ++Q + +         
Sbjct: 6   NIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ-------RE 58

Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIR 131
            +L+ E +H NIV+LL V   G+ + L+FEY+   DL  F+R
Sbjct: 59  AALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLR 100

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y++++++G G +G+VYK  NL TG+  A+K+I +  EP    S +   + ++KE +H N
Sbjct: 10  DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKL--EPGDDFSLIQQEIFMVKECKHCN 67

Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV       +   +++  EY
Sbjct: 68  IVAYFGSYLSREKLWICMEY 87

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 49  IGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           +GQG FG VY+      +  E   +VAIK +N +N         +   S++KE    ++V
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVN-ENASMRERIEFLNEASVMKEFNCHHVV 72

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           RLL V++TG+   +V E +   DL S++R  
Sbjct: 73  RLLGVVSTGQPTLVVMELMAKGDLKSYLRSR 103

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 41  WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
             + +  K+G G FGEV++ L      +VAIK++  +++           V  LK L H 
Sbjct: 6   EEFTLERKLGSGYFGEVWEGLWKNR-VRVAIKIL--KSDDLLKQQDFQKEVQALKRLRHK 62

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIR 131
           +++ L  V + G  VY++ E ++   L +F+R
Sbjct: 63  HLISLFAVCSVGEPVYIITELMEKGSLLAFLR 94

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 14/118 (11%)

Query: 48  KIGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           K+G+G +G VYK    +    +  A+K I    E  G+       ++LL+EL+H N++ L
Sbjct: 8   KVGRGTYGHVYKAKRKDGKDDRDYALKQI----EGTGISMSACREIALLRELKHPNVISL 63

Query: 106 LDVLTT--GRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVY 161
             V  +   R V+L+F+Y + DL   I+ H  +      K    P + P   ++S +Y
Sbjct: 64  QKVFLSHADRKVWLLFDYAEHDLWHIIKFHRAS------KANKKPVQLPRGMVKSLLY 115

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++++ ++G G FG+VYK  N ETG   A K+I  ++E E +  Y++  + +L    H  I
Sbjct: 14  WEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE-LEDYMVE-IEILATCNHPYI 71

Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+LL        ++++ E+
Sbjct: 72  VKLLGAFYWDGKLWIMIEF 90

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV--PSYLIAGVSLLKELEHDN 101
           K+  K+G G FGEV+      T  KVA+K +       G   P   +    ++K+L HD 
Sbjct: 9   KLERKLGAGQFGEVWMGTWNGT-TKVAVKTLK-----PGTMSPEAFLQEAQIMKKLRHDK 62

Query: 102 IVRLLDVLTTGRYVYLVFEYL 122
           +V+L  V +    +Y+V EY+
Sbjct: 63  LVQLYAVCSEEEPIYIVTEYM 83

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 48  KIGQGVFGEVY--KCLNL--ETGKK-VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++G+G FG+V+  +C NL  E  K  VA+K +   +E         A   LL  L+H +I
Sbjct: 12  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREA--ELLTVLQHQHI 69

Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           VR   V T GR + +VFEY+   DL  F+R H
Sbjct: 70  VRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSH 101

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 23/82 (28%), Positives = 39/82 (47%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y++++KIG+G FG++Y        +   IK I++   P          V LL +++H N
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN 60

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           IV           +++V EY D
Sbjct: 61  IVTFFASFQENGRLFIVMEYCD 82

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY-LIAGVSLLKELEHD 100
           N+++ +KIG+G F EVY+   L   K VA+K + I    +       +  + LLK+L H 
Sbjct: 3   NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHP 62

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIR 131
           N+++ LD       + +V E  D  DL   I+
Sbjct: 63  NVIKYLDSFIEDNELNIVLELADAGDLSQMIK 94

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 20/125 (16%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSY--------LIAGVS 92
            Y V+E +G G FG VYK      G+  +A+K IN+ N   G            +++ V+
Sbjct: 1   EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVT 60

Query: 93  LLKE-LEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKA 151
           ++KE L H NIVR          +Y+V + ++   G+ + +H  +     +KE    +  
Sbjct: 61  IIKEQLRHPNIVRYYKTFLENDRLYIVMDLIE---GAPLGEHFNS-----LKEKKQRF-- 110

Query: 152 PESRI 156
            E RI
Sbjct: 111 TEERI 115

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 49  IGQGVFGEVYKCLNLETG-----KKVAIKMINIQNEP--EGVPSYLIAGVSLLKELEHDN 101
           IG G FG VY  +N  +G     K+V +  ++  ++     +   L   ++LLKEL+H+N
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67

Query: 102 IVRLLDVLTTGRYVYLVFEYL 122
           IV+ L       ++ +  EY+
Sbjct: 68  IVQYLGSSLDADHLNIFLEYV 88

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 19/80 (23%), Positives = 38/80 (47%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +++++ KIG+G FG V+K +     +  A+K I++           I    +L +L+   
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60

Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           I+R  +       + +V EY
Sbjct: 61  IIRYYESFLDKGKLNIVMEY 80

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 21/80 (26%), Positives = 35/80 (43%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +  +G+G FG V+ C      K V IK I ++   +           +LK L H N
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN 60

Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           I+   +     + + +V EY
Sbjct: 61  IIEYYENFLEDKALMIVMEY 80

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           E +G+G FGEV+K   L+    VA+K    ++ P+ +    ++   +LK+ +H NIV+L+
Sbjct: 1   ELLGKGNFGEVFKG-TLKDKTPVAVKTCK-EDLPQELKIKFLSEARILKQYDHPNIVKLI 58

Query: 107 DVLTTGRYVYLVFEYLD-LDLGSFIRK 132
            V T  + +Y+V E +   D  SF+RK
Sbjct: 59  GVCTQRQPIYIVMELVPGGDFLSFLRK 85

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 66/204 (32%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +   G  VA+K ++   QN+     +Y    + LLK + H 
Sbjct: 23  YQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAY--RELVLLKCVNHK 80

Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLG------------SFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VYLV E +D +L             S++    +  I+ H+
Sbjct: 81  NIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIK-HL 139

Query: 143 KEVG------------------------------------SPY------KAPESRIRSSV 160
              G                                    +PY      +APE  I    
Sbjct: 140 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEV-ILGMG 198

Query: 161 YSTPHDVWAVGCIFAEMVSGKPLF 184
           Y    D+W+VGCI  E+V G  +F
Sbjct: 199 YKENVDIWSVGCIMGELVKGSVIF 222

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 78/235 (33%)

Query: 8   HDLFRTNMKKVKDCCYKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGK 67
           H+ FR  ++ V       V   +    ++     N+    KIG+G  G V    +  TG+
Sbjct: 1   HEQFRAALQLV-------VDPGDPRSYLD-----NFV---KIGEGSTGIVCIATDKSTGR 45

Query: 68  KVAIKMINI--QNEPEGVPSYLIAGVSLLKELEHDNIVR--------------------- 104
           +VA+K +++  Q   E     L   V ++++ +H NIV                      
Sbjct: 46  QVAVKKMDLRKQQRRE----LLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGG 101

Query: 105 -LLDVLTTGR-----------YVYLVFEYL--------DLDLGSFIRKHT---------- 134
            L D++T  R            V     +L        D+   S +              
Sbjct: 102 ALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGF 161

Query: 135 ---ITSIRPHIKE-VGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
              ++   P  K  VG+PY  APE  I    Y T  D+W++G +  EMV G+P +
Sbjct: 162 CAQVSKEVPRRKSLVGTPYWMAPEV-ISRLPYGTEVDIWSLGIMVIEMVDGEPPY 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           K+ E IG G FGEV +      GK+   VAIK +      +    +L +  S++ + +H 
Sbjct: 7   KIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFL-SEASIMGQFDHP 65

Query: 101 NIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIR 131
           NI+ L  V+T  R V ++ E+++   L SF+R
Sbjct: 66  NIIHLEGVVTKSRPVMIITEFMENGALDSFLR 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI--QNEPEGVPSYLIAGVSLLKELEHD 100
           +++VE IG+G +G+VYK  + +TG+ VAIK+++I    E E    Y I    L K   H 
Sbjct: 8   FELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNI----LRKYSNHP 63

Query: 101 NIVR 104
           NI  
Sbjct: 64  NIAT 67

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 17/36 (47%), Positives = 27/36 (75%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+APE  + ++ Y+T  D+W++GCI AEM+ G P+F
Sbjct: 236 YRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIF 271

Length = 440

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 46  VEKIGQGVFGEVYKCLNLETGK-KVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDNI 102
           ++++G G FG V+  L    GK  VAIKMI      EG  S    I    ++ +L H N+
Sbjct: 9   LKELGSGQFGVVH--LGKWRGKIDVAIKMIR-----EGAMSEDDFIEEAKVMMKLSHPNL 61

Query: 103 VRLLDVLTTGRYVYLVFEYLDLD-LGSFIRKH 133
           V+L  V T  R +++V EY+    L +++R+ 
Sbjct: 62  VQLYGVCTKQRPIFIVTEYMANGCLLNYLRER 93

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 56/197 (28%)

Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           I +G FG VY      TG   AIK++   +      V +       ++ + E   + +L 
Sbjct: 4   ISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLY 63

Query: 107 DVLTTGRYVYLVFEYLD-LDLGSFIRKHTITS---------------------------I 138
               +  Y+YLV EYL+  D  S I+                                 I
Sbjct: 64  YSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDI 123

Query: 139 RP---------HIKE---------------VGSP-YKAPESRIRSSVYSTPHDVWAVGCI 173
           +P         H+K                VG+P Y APE+ I         D W++GC+
Sbjct: 124 KPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPET-ILGVGDDKMSDWWSLGCV 182

Query: 174 FAEMVSGKPLFPCGKKD 190
             E + G P F     D
Sbjct: 183 IFEFLFGYPPFHAETPD 199

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 44  KVVEKIGQGVFGEVYK----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           + +E++G+  FG++YK       ++  + VAIK +   N P+    +     SL+ EL H
Sbjct: 8   RFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQ-QEASLMAELHH 66

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFI 130
            NIV LL V+T  + V ++FEYL+  DL  F+
Sbjct: 67  PNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFL 98

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           Y+APE  +    Y+   D+W+VGCI AEM++GK LF  GK   D L+ I++
Sbjct: 180 YRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFK-GKDYLDQLTQILK 229

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  +    Y+   D+W+VGCI AE++ GK LFP
Sbjct: 181 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFP 217

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +++++++IG G +G+VYK  N+ TG+  AIK+I +  EP    + +   + ++K+ +H N
Sbjct: 10  DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKL--EPGEDFAVVQQEIIMMKDCKHSN 67

Query: 102 IV 103
           IV
Sbjct: 68  IV 69

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 56/192 (29%)

Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           +E+IG+G FGEVYK ++  T + VAIK+I+++ E E     +   +++L + +   I R 
Sbjct: 9   LERIGKGSFGEVYKGIDNRTKEVVAIKIIDLE-EAEDEIEDIQQEITVLSQCDSPYITRY 67

Query: 106 LDVLTTGRYVYLVFEYLD----LDL-----------GSFIRK--------HTITSIRPHI 142
                 G  ++++ EYL     LDL            + +R+        H+   I   I
Sbjct: 68  YGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDI 127

Query: 143 KE--------------------------------VGSPYKAPESRIRSSVYSTPHDVWAV 170
           K                                 VG+P+      I+ S Y    D+W++
Sbjct: 128 KAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSL 187

Query: 171 GCIFAEMVSGKP 182
           G    E+  G+P
Sbjct: 188 GITAIELAKGEP 199

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPS---YLIAGVSLLKELEH 99
           Y  ++ +G G FG V    +  TG+ VAIK I    +P   P         + LLK L H
Sbjct: 12  YVDLQPVGMGAFGLVCSARDQLTGQNVAIKKI---MKPFSTPVLAKRTYRELKLLKHLRH 68

Query: 100 DNIVRLLDVLTTGRY-VYLVFEYLDLDLGSFIRKHTITSIRP 140
           +NI+ L D+  +    +Y V E L  DL      H + + RP
Sbjct: 69  ENIISLSDIFISPLEDIYFVTELLGTDL------HRLLTSRP 104

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 38  VKDWNYKVVEKIGQGVFGEVY--KCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGVSLL 94
           +K  N  +  ++G+G FG+V+  +C NL     K+ + +  +++  +           LL
Sbjct: 2   IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELL 61

Query: 95  KELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
             L+H++IV+   V   G  + +VFEY+   DL  F+R H
Sbjct: 62  TNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAH 101

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+V+K+G G FGEV+         KVA+K   ++     V ++L    +L+K L+HD +V
Sbjct: 9   KLVKKLGAGQFGEVWMGY-YNNSTKVAVK--TLKPGTMSVQAFL-EEANLMKTLQHDKLV 64

Query: 104 RLLDVLTTGRYVYLVFEYL 122
           RL  V+T    +Y++ EY+
Sbjct: 65  RLYAVVTKEEPIYIITEYM 83

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 58/196 (29%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVP------------------ 84
           +  +EKIG+G FGEV+K ++  T K VAIK+I+++   + +                   
Sbjct: 6   FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 65

Query: 85  ----SYL-----------IAGVSLLKELEHD------------NIVRLLDVLTTGRYVY- 116
               SYL           + G S L  LE               I++ LD L + + ++ 
Sbjct: 66  KYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHR 125

Query: 117 -------LVFEYLDLDLGSFIRKHTITSIRPHIKE---VGSPYKAPESRIRSSVYSTPHD 166
                  L+ E+ ++ L  F     +T  +  IK    VG+P+      I+ S Y +  D
Sbjct: 126 DIKAANVLLSEHGEVKLADFGVAGQLTDTQ--IKRNTFVGTPFWMAPEVIKQSAYDSKAD 183

Query: 167 VWAVGCIFAEMVSGKP 182
           +W++G    E+  G+P
Sbjct: 184 IWSLGITAIELAKGEP 199

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMINIQ-----NEPEGVPSYLIAGVSLLKELEHDNIV 103
           +G+G FG+V      +TGK  A+K++  +      E E    + +   ++L  + H  IV
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVE----HTLTERNILSRINHPFIV 56

Query: 104 RLLDVLTTGRYVYLVFEYL 122
           +L     T   +YLV EY 
Sbjct: 57  KLHYAFQTEEKLYLVLEYA 75

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+++ IG+G FG+V   L    G KVA+K I    + +      +A  S++ +L H N+V
Sbjct: 9   KLLQTIGKGEFGDVM--LGDYRGNKVAVKCI----KNDATAQAFLAEASVMTQLRHSNLV 62

Query: 104 RLLDVLTTGR-YVYLVFEYL 122
           +LL V+   +  +Y+V EY+
Sbjct: 63  QLLGVIVEEKGGLYIVTEYM 82

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 44  KVVEKIGQGVFGEV-YKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K+ + IG G FGEV    L L  GK+   VAIK +      +    +L +  S++ + +H
Sbjct: 7   KIEKVIGAGEFGEVCSGRLKLP-GKREIPVAIKTLKAGYTEKQRRDFL-SEASIMGQFDH 64

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            NI+ L  V+T  + V +V EY++   L +F+RKH
Sbjct: 65  PNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKH 99

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 48  KIGQGVFGEVY--KCLNLE-TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVR 104
           ++G+G FG+V+  +C NL  T  K+ + +  +++              LL  L+H++IV+
Sbjct: 12  ELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVK 71

Query: 105 LLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
              V   G  + +VFEY+   DL  F+R H
Sbjct: 72  FYGVCGDGDPLIMVFEYMKHGDLNKFLRAH 101

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 42  NYKVVEKIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
             + +E++G+G FG+VYK          +   VAIK +    EP+ V         L+ +
Sbjct: 6   AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPK-VQQEFRQEAELMSD 64

Query: 97  LEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITS 137
           L+H NIV LL V T  +   ++FEYL   DL  F+ +++  S
Sbjct: 65  LQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHS 106

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 66/205 (32%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 19  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 76

Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLG------------SFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VYLV E +D +L             S++    +  I+ H+
Sbjct: 77  NIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIK-HL 135

Query: 143 KEVG------------------------------------SPY------KAPESRIRSSV 160
              G                                    +PY      +APE  I    
Sbjct: 136 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMG 194

Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y    D+W+VGCI  EMV  K LFP
Sbjct: 195 YKENVDIWSVGCIMGEMVRHKILFP 219

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           E+IG+G FGEV+          VA+K       P+    +L     +LK+  H NIVRL+
Sbjct: 1   ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEA-RILKQYSHPNIVRLI 59

Query: 107 DVLTTGRYVYLVFEYLD-LDLGSFIR 131
            V T  + +Y+V E +   D  +F+R
Sbjct: 60  GVCTQKQPIYIVMELVQGGDFLTFLR 85

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 17/88 (19%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI----NIQNEPEGVPSYLIAGVSLLKEL- 97
           ++++E IG+G +G+V+K LN + G K A+K++    +I  E E       A  ++LK L 
Sbjct: 20  WEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIE-------AEYNILKALS 72

Query: 98  EHDNIVRLLDV-----LTTGRYVYLVFE 120
           +H N+V+   +     +  G  ++LV E
Sbjct: 73  DHPNVVKFYGMYYKKDVKNGDQLWLVLE 100

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 24/104 (23%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN------------IQNEPEGVPSYLIA 89
           +++ ++ +G G FG V    +  +GK  A+K+++            + NE          
Sbjct: 2   DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNE---------- 51

Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRK 132
              +L+ + H  +V L         +YLV EY+   +L S +RK
Sbjct: 52  -KRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRK 94

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 56/192 (29%)

Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           +E+IG+G FGEV+K ++  T + VAIK+I+++ E E     +   +++L + +   + + 
Sbjct: 9   LERIGKGSFGEVFKGIDNRTQQVVAIKIIDLE-EAEDEIEDIQQEITVLSQCDSPYVTKY 67

Query: 106 LDVLTTGRYVYLVFEYLD----LDL---GSF-----------IRK-----HTITSIRPHI 142
                 G  ++++ EYL     LDL   G F           I K     H+   I   I
Sbjct: 68  YGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDI 127

Query: 143 KE--------------------------------VGSPYKAPESRIRSSVYSTPHDVWAV 170
           K                                 VG+P+      I+ S Y +  D+W++
Sbjct: 128 KAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSL 187

Query: 171 GCIFAEMVSGKP 182
           G    E+  G+P
Sbjct: 188 GITAIELAKGEP 199

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)

Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 13  ELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFL-NEASVMKEFNCHHV 71

Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP  +   +P +AP S
Sbjct: 72  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRP--EMENNPVQAPPS 117

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 48  KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLD 107
           K+G G +GEVY+ +  +    VA+K +        V  +L    +++KE++H N+V+LL 
Sbjct: 13  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME--VEEFL-KEAAVMKEIKHPNLVQLLG 69

Query: 108 VLTTGRYVYLVFEYL 122
           V T     Y++ E++
Sbjct: 70  VCTREPPFYIITEFM 84

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 145 VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
           VG+PY     ++    Y    D+W++GC+  E+ +  P  P   ++ L L  +
Sbjct: 171 VGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSP--PFTARNQLQLASK 221

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 134 TITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
            ++  +     VG+PY  APE  I    Y    D+W++G    E+  GKP
Sbjct: 147 QLSDTKARNTMVGTPYWMAPE-VINGKPYDYKADIWSLGITAIELAEGKP 195

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLET--GKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-- 97
            Y++++++GQG +G V    N ET   + VAIK I        V S  I     L+EL  
Sbjct: 1   RYELIKELGQGAYGIVCSARNAETSEEETVAIKKIT------NVFSKKILAKRALRELKL 54

Query: 98  -----EHDNIVRL--LDVLTTGRY--VYLVFEYLDLDLGSFIR 131
                 H NI  L  +D++  G +  +YL  E ++ DL   IR
Sbjct: 55  LRHFRGHKNITCLYDMDIVFPGNFNELYLYEELMEADLHQIIR 97

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 24/109 (22%)

Query: 49  IGQGVFGEVYKCLNLETGKKVAI-KMINI-QNEPEGVPSYLIAGVSLLKELE------HD 100
           IG G FG V+   +   GK+VA+ KM N+ QN        L++   + +EL+      HD
Sbjct: 8   IGYGAFGVVWSVTDPRDGKRVALKKMPNVFQN--------LVSCKRVFRELKMLCFFKHD 59

Query: 101 NIVRLLDVLTTG-----RYVYLVFEYLDLDLGSFI-RKHTITSIRPHIK 143
           N++  LD+L          +Y+V E +  DL   I     ++S   H+K
Sbjct: 60  NVLSALDILQPPHIDPFEEIYVVTELMQSDLHKIIVSPQPLSS--DHVK 106

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 11  FRTNMKKVKDCCYKVVKKTNGSEQMEKVKD--------WNYKVVEKIGQGVFGEVYKCLN 62
           F  N KK+ +            E  EK+ D         +YK+   IG G FG VY+ + 
Sbjct: 28  FEMNDKKLDEEERSHNNNAGEDEDEEKMIDNDINRSPNKSYKLGNIIGNGSFGVVYEAIC 87

Query: 63  LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT 111
           ++T +KVAIK + +Q+     P Y    + ++K L H NI+ L D   T
Sbjct: 88  IDTSEKVAIKKV-LQD-----PQYKNRELLIMKNLNHINIIFLKDYYYT 130

Length = 440

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    +    +KVA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 17  YQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTY--RELRLLKHMKHE 74

Query: 101 NIVRLLDVLTTG------RYVYLVFEYLDLDLGSFIRKHTIT 136
           N++ LLDV T          VYLV   +  DL + ++   ++
Sbjct: 75  NVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKCQKLS 116

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 53/200 (26%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           E +G G  G VYK  +L T + +A+K+I +    E +   +++ + +L + +   I+   
Sbjct: 7   EILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVE-LQKQIMSELEILYKCDSPYIIGFY 65

Query: 107 DVLTTGRYVYLVFEYLD---LDLGSFIRKHTITSI------------------------- 138
                   + +  E++D   LD+   I +H +  I                         
Sbjct: 66  GAFFVENRISICTEFMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSN 125

Query: 139 -----RPHIK-----------------EVGS-PYKAPESRIRSSVYSTPHDVWAVGCIFA 175
                R  +K                  VG+  Y APE RI    Y    DVW++G  F 
Sbjct: 126 MLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPE-RISGEQYGIHSDVWSLGISFM 184

Query: 176 EMVSGKPLFPCGKKDHLSLI 195
           E+  G+  +P  +K+  SL+
Sbjct: 185 ELALGRFPYPQIQKNQGSLM 204

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             +VV  +G+G +G VY   +L T  ++AIK I  ++     P  L   ++L   L+H N
Sbjct: 11  GERVV--LGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQP--LHEEIALHSYLKHRN 66

Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IV+ L   +   +  +  E
Sbjct: 67  IVQYLGSDSENGFFKIFME 85

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG-VPSYLIAGVSLLKELEHD 100
           N+++ +KIG+G F EVY+   L  G  VA+K + I +  +    +  I  + LLK+L H 
Sbjct: 3   NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHP 62

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIR 131
           N+++          + +V E  D  DL   I+
Sbjct: 63  NVIKYYASFIEDNELNIVLELADAGDLSRMIK 94

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           V +IG G  G VYK ++  TG+  A+K+I   N  + V   +   + +L+++ H N+V+ 
Sbjct: 79  VNRIGSGAGGTVYKVIHRPTGRLYALKVI-YGNHEDTVRRQICREIEILRDVNHPNVVKC 137

Query: 106 LDVLTTGRYVYLVFEYLD 123
            D+      + ++ E++D
Sbjct: 138 HDMFDHNGEIQVLLEFMD 155

Length = 353

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 53/212 (25%), Positives = 81/212 (38%), Gaps = 68/212 (32%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 83

Query: 101 NIVRLLDVLTTGRY------VYLVFEY------------LDLDLGSFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VY+V E             LD +  S++    +  I+ H+
Sbjct: 84  NIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIK-HL 142

Query: 143 KEVG------------------------------------SP------YKAPESRIRSSV 160
              G                                    +P      Y+APE  I    
Sbjct: 143 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMG 201

Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL 192
           Y    D+W+VGCI  EM+ G  LFP    DH+
Sbjct: 202 YKENVDIWSVGCIMGEMIKGGVLFP--GTDHI 231

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 45  VVEKIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-E 98
           + + +G+G FG+V K       N      VA+KM+   +  E   S L++ + ++K + +
Sbjct: 16  LGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLK-DDATEKDLSDLVSEMEMMKMIGK 74

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           H NI+ LL V T    +Y+V EY    +L  F+R  
Sbjct: 75  HKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRAR 110

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 47  EKIGQGVFGEVYKCL--NLETGK-KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
             IG+G FG+VY+ +  + E  K  VA+K       P     +L     ++++ +H +IV
Sbjct: 12  RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFL-QEAYIMRQFDHPHIV 70

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +L+ V+T    V++V E   L +L S+++ +
Sbjct: 71  KLIGVITENP-VWIVMELAPLGELRSYLQVN 100

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFTALT 203
           + APE  +R   Y    DVW+VGC+  EM + KP +   K  +HL+LI +  +A T
Sbjct: 174 FMAPEV-LRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATT 228

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 146 GSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI 195
           G+PY  APE  I  S Y    D+W++GC   EM +GKP  P    D L+ +
Sbjct: 170 GTPYWMAPEV-INESGYGRKSDIWSIGCTVFEMATGKP--PLASMDRLAAM 217

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 64/202 (31%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV----SLLKEL 97
           + + ++ +G G FG V+   +  +    A+K++ I   PE +       V     +LKE+
Sbjct: 2   DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAI---PEVIRLKQEQHVHNEKRVLKEV 58

Query: 98  EHDNIVRLLDVLTTGRYVYLV---------FEYLDLDLGSF------------------I 130
            H  I+RL       R++Y++         F YL  + G F                  +
Sbjct: 59  SHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLR-NSGRFSNSTGLFYASEIVCALEYL 117

Query: 131 RKHTIT--SIRP---------HI--------KEV--------GSP-YKAPESRIRSSVYS 162
               I    ++P         HI        K++        G+P Y APE  I+S  ++
Sbjct: 118 HSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEV-IQSKGHN 176

Query: 163 TPHDVWAVGCIFAEMVSGKPLF 184
              D WA+G +  EM+ G P F
Sbjct: 177 KAVDWWALGILIYEMLVGYPPF 198

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 44  KVVEKIGQGVFGEV----YKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K +  +G+G FG+V    Y   N  TG+ VA+K +  +   +    +    +++LK L H
Sbjct: 7   KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGW-KKEINILKTLYH 65

Query: 100 DNIVRLLDVLTT--GRYVYLVFEYLDL-DLGSFIRKHTI 135
           +NIV+     +   G+ + L+ EY+ L  L  ++ KH +
Sbjct: 66  ENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKL 104

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 49  IGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           IG G FGEV++ +    G+K   VAIK +      +    +L +  S++ +  H NI+RL
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFL-SEASIMGQFSHHNIIRL 71

Query: 106 LDVLTTGRYVYLVFEYLDLD-LGSFIRKH 133
             V+T  +   ++ EY++   L  ++R H
Sbjct: 72  EGVVTKFKPAMIITEYMENGALDKYLRDH 100

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 145 VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT 203
            G+P Y APE  +    Y    D W++G +  EM++GKP F    +  +     Y   L 
Sbjct: 154 CGTPEYLAPEV-LLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEI-----YEKILK 207

Query: 204 NYLVLPCFLS 213
           + L  P FLS
Sbjct: 208 DPLRFPEFLS 217

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 8/82 (9%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDN 101
            +V++IG G FG V+    LE  +KVAIK I      EG  S    I    ++ +L H  
Sbjct: 7   TLVQEIGSGQFGLVWLGYWLEK-RKVAIKTIR-----EGAMSEEDFIEEAQVMMKLSHPK 60

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           +V+L  V T    + LVFE+++
Sbjct: 61  LVQLYGVCTERSPICLVFEFME 82

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 49  IGQGVFGEVYK-----CLNLETGK-KVAIKMIN----IQNEPEGVPSYLIAGVSLLKELE 98
           +G G FGEVY+      L   +G  +VA+K +      Q + E      +    L+    
Sbjct: 3   LGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKE-----FLKEAHLMSNFN 57

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRP 140
           H NIV+LL V       Y++ E ++  DL S++R   +    P
Sbjct: 58  HPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGP 100

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 123 DLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           DL LG F    T  +   H   VG+PY     RI  + Y+   D+W++GC+  EM + + 
Sbjct: 149 DLGLGRFFSSKTTAA---H-SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQS 204

Query: 183 LFPCGKKDHLSL 194
            F   K +  SL
Sbjct: 205 PFYGDKMNLFSL 216

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 49  IGQGVFGEVYKCL---NLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           +G+G FGEV+        E G +  V +K +    + E + S     + + ++L H N+V
Sbjct: 13  LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD-ENLQSEFRRELDMFRKLSHKNVV 71

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIR 131
           RLL +       Y++ EY DL DL  F+R
Sbjct: 72  RLLGLCREAEPHYMILEYTDLGDLKQFLR 100

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  V+KIG+G FG+     + E GK+  IK INI              V++L  ++H NI
Sbjct: 2   YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNI 61

Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           V+  +       +Y+V +Y +
Sbjct: 62  VQYQESFEENGNLYIVMDYCE 82

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYL----VFEYLDLDLGSFIRKHTITSIRPHIKEVG 146
           V L   LEH +  R++        V++    V +  DL LG F    T  +   H   VG
Sbjct: 113 VQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAA---H-SLVG 168

Query: 147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL 194
           +PY     RI  + Y+   D+W++GC+  EM + +  F   K +  SL
Sbjct: 169 TPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSL 216

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           E IG+G FG V +     TG+KVA+K I      +      +   +++ +L H N+VRLL
Sbjct: 12  EIIGEGEFGAVLQ--GEYTGQKVAVKNIKCDVTAQA----FLEETAVMTKLHHKNLVRLL 65

Query: 107 DV-LTTGRYVYLVFEYLDL-DLGSFIR 131
            V L  G  +Y+V E +   +L +F+R
Sbjct: 66  GVILHNG--LYIVMELMSKGNLVNFLR 90

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 25/152 (16%)

Query: 23  YKVVKKTNGSE-------QMEKVKDW-----NYKVVEKIGQGVFGEVYKCLNLETGK--- 67
           +K+++   G+        Q+   + W     N +  + +G G FG+V +      GK   
Sbjct: 8   WKIIEAAEGNNYTFIDPTQLPYNEKWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDN 67

Query: 68  --KVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL 124
             +VA+KM+      +   + L++ + +L  L +H NIV LL   T G  V ++ EY   
Sbjct: 68  VLRVAVKMLKASAHTDEREA-LMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEYCCY 126

Query: 125 -DLGSFIRKHTITSIR-----PHIKEVGSPYK 150
            DL +F+RK   T +      P I E  S YK
Sbjct: 127 GDLLNFLRKKAETFLNFVMALPEISETSSDYK 158

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
          +++VE +G G +G+VYK  +++TG+  AIK++++  + E     +   +++LK+  H
Sbjct: 18 FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEE---EEIKLEINMLKKYSH 71

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 14/94 (14%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSY--LIAGVSLLKELE 98
           Y+ ++ IG G  G V    +  TG+ VAIK ++   QN      +Y  L+    L+K + 
Sbjct: 18  YQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELV----LMKLVN 73

Query: 99  HDNIVRLLDVLT------TGRYVYLVFEYLDLDL 126
           H NI+ LL+V T        + VYLV E +D +L
Sbjct: 74  HKNIIGLLNVFTPQKSLEEFQDVYLVMELMDANL 107

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI----NIQNEPEGVPSYLIAGVSLLKEL 97
            +   +++G G F   Y+  +++TG  +A+K +    N  +E E V   L   + L+  L
Sbjct: 1   EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARL 60

Query: 98  EHDNIVRLL 106
            H +I+R+L
Sbjct: 61  NHPHIIRML 69

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIAGVSLLKELEHDNIVR 104
           +G G FG V         +  A+K +     ++    G   ++ +   +L+E  H  IV+
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVET---GQQEHIFSEKEILEECNHPFIVK 57

Query: 105 LLDVLTTGRYVYLVFEY-LDLDLGSFIRKH 133
           L       +Y+Y++ EY L  +L + +R  
Sbjct: 58  LYRTFKDKKYIYMLMEYCLGGELWTILRDR 87

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 145 VGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           VG+PY  APE  I+   Y    D+W++G +  EM  G+P
Sbjct: 177 VGTPYWMAPEV-IKRKDYGPKVDIWSLGIMCIEMAEGEP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 145 VGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           VG+PY  APE  I  S  ST  D+W++GC   E+++G P
Sbjct: 160 VGTPYWMAPEV-IEMSGASTASDIWSLGCTVIELLTGNP 197

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 145 VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           VG+P Y +PE   ++  Y+   D+W++GC+  E+ + K  F
Sbjct: 164 VGTPYYLSPE-LCQNKPYNYKSDIWSLGCVLYELCTLKHPF 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 48  KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLD 107
           KIG+G  G V       TGK+VA+K ++++ +       L   V ++++  H+N+V + +
Sbjct: 29  KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQR--RELLFNEVVIMRDYHHENVVDMYN 86

Query: 108 VLTTGRYVYLVFEYLDLDLGSFIRKHT 134
               G  +++V E+L+    + I  HT
Sbjct: 87  SYLVGDELWVVMEFLEGGALTDIVTHT 113

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 113 RYVYLVFEYLDLDLGSFIRKHTITSIRPHIKE--VGSP-YKAPESRIRSSVYSTPHDVWA 169
           R  YL   +  L   + + +      R       VG+P Y APE  +R + Y    D W+
Sbjct: 157 REYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEV-LRGTPYGLECDWWS 215

Query: 170 VGCIFAEMVSGKPLF 184
           +G I  EM+ G P F
Sbjct: 216 LGVILYEMLYGFPPF 230

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 9/82 (10%)

Query: 44  KVVEKIGQGVFGEVYKCL-NLETGKKVAIKMINIQNEPEGV-PSYLIAGVSLLKELEHDN 101
           ++++K+G G FGEV+    N  T  KVA+K +    +P  + P   +    ++K+L HD 
Sbjct: 9   QLIKKLGNGQFGEVWMGTWNGNT--KVAVKTL----KPGTMSPESFLEEAQIMKKLRHDK 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           +V+L  V++    +Y+V EY+ 
Sbjct: 63  LVQLYAVVSE-EPIYIVTEYMS 83

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 18/106 (16%)

Query: 47  EKIGQGVFGEVYKC--------------LNLETGKK--VAIKMINIQNEPEGVPSYLIAG 90
           EK+G+G FGEV+ C               N+  G+   VA+K++   +  +   +  +  
Sbjct: 11  EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILR-PDANKNARNDFLKE 69

Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTI 135
           V +L  L+  NI+RLL V      + ++ EY++  DL  F+  H +
Sbjct: 70  VKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHL 115

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK-PLFPCGKK-----DHLSLIV 196
           S Y APE RI+ + YS   D+W++G    E+ +G+ P  P         + L  IV
Sbjct: 163 SSYMAPE-RIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIV 217

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+ PE  +    Y    DVW+ GCI  E+ + KP+F
Sbjct: 183 YRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIF 218

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 121 YLDLDLGSFIRKHTITSIRPHIK--EVGSP-YKAPE--SRIRSSVYSTPHDVWAVGCIFA 175
            +D  L   +     TS  P +    VG+P Y APE    +  +  S+  D+W++G    
Sbjct: 143 LIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLY 202

Query: 176 EMVSGKPLFP 185
           E+++G P F 
Sbjct: 203 ELLTGLPPFE 212

Length = 384

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 145 VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           VG+  Y +PE  +         D+WA+GCI  +M++GKP F
Sbjct: 183 VGTAEYVSPEL-LNEKPAGKSSDLWALGCIIYQMLTGKPPF 222

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 26/132 (19%)

Query: 23  YKVVKKTNGSE-------QMEKVKDW-----NYKVVEKIGQGVFGEVYKCLNLETGK--- 67
           +KV++  NG+E       Q+     W     N    + +G G FG+V +       K   
Sbjct: 5   WKVIESINGNEYVYIDPTQLPYDLKWEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDA 64

Query: 68  --KVAIKMINIQNEPEGVPSYLIAGVSLLKEL----EHDNIVRLLDVLTTGRYVYLVFEY 121
             KVA+KM+    +P    S   A +S LK +     H+NIV LL   T G  + ++ EY
Sbjct: 65  VMKVAVKML----KPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEY 120

Query: 122 LDL-DLGSFIRK 132
               DL +F+R+
Sbjct: 121 CCYGDLLNFLRR 132

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 64  ETGKKVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDNIVRLLDVLTTG-RYVYLVFE 120
            TG +VAIK++   + PE            +L   L H NIV LLD        ++ VFE
Sbjct: 1   MTGHEVAIKLLRT-DAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFE 59

Query: 121 YL 122
           Y+
Sbjct: 60  YV 61

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 48  KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV-PSYLIAGVSLLKELEHDNIVRLL 106
           K+GQG FGEV+         +VAIK +    +P  + P   +    ++K+L H+ +V+L 
Sbjct: 13  KLGQGCFGEVWMG-TWNGTTRVAIKTL----KPGTMSPEAFLQEAQVMKKLRHEKLVQLY 67

Query: 107 DVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIR-PHIKEVGS 147
            V++    +Y+V EY+    L  F++      +R P + ++ +
Sbjct: 68  AVVSE-EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAA 109

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 47  EKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           +++G G FG V K + L    K   VA+K +  ++   G   +L    S++ +L+H  IV
Sbjct: 1   KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFL-REASVMAQLDHPCIV 59

Query: 104 RLLDVLTTGRYVYLVFEYLDLD-LGSFIRKHTITS 137
           RL+ V   G  + LV E   L  L  +++K     
Sbjct: 60  RLIGV-CKGEPLMLVMELAPLGPLLKYLKKRREIP 93

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 47  EKIGQGVFGEVYKC------------LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVS 92
           EK+G+G FGEV+ C                 G+   VA+KM+           +L   + 
Sbjct: 11  EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFL-KEIK 69

Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITS 137
           ++  L++ NI+RLL V  +   + ++ EY++  DL  F+ +  I S
Sbjct: 70  IMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIES 115

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 139 RPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
           RP ++  GS +  APE  ++ + Y+   D+W++GC+  EM++GK  FP      L  I +
Sbjct: 169 RPSLQ--GSVFWMAPEV-VKQTSYTRKADIWSLGCLVVEMLTGKHPFP--DCTQLQAIFK 223

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 145 VGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           VG+PY  APE  I  + Y T  D+W++G +  EMV G+P
Sbjct: 178 VGTPYWMAPEV-ISRTPYGTEVDIWSLGIMVIEMVDGEP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 20/106 (18%)

Query: 43  YKVVEKIGQGVFGEVYKC-LNLETGKKVAIKMINIQNEPEGVP----------------- 84
           ++V++ +  G FG+++ C L   T +  A + +N  N+  G P                 
Sbjct: 150 FRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQ--GKPKCERLIAKRVKAGSRAA 207

Query: 85  SYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
             L   +  L  L H+NI+++ ++L +    Y++ +  D DL SF+
Sbjct: 208 IQLENEILALGRLNHENILKIEEILRSEANTYMITQKYDFDLYSFM 253

Length = 501

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 19/108 (17%)

Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKK----VAIKMINIQNEPEGVPSYLIAGVSL 93
           +K+   + ++ +G G FG VYK + +  G+K    VAIK++  +  P+       A   +
Sbjct: 4   LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPK-------ANKEI 56

Query: 94  LKE------LEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHT 134
           L E      ++H ++VRLL +  + + V L+ + + L  L  ++R H 
Sbjct: 57  LDEAYVMASVDHPHVVRLLGICLSSQ-VQLITQLMPLGCLLDYVRNHK 103

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKELEH 99
           +++ ++ IG+G FGEV      +TG   A+K +      E E V +++ A   +L E ++
Sbjct: 2   DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQV-AHVRAERDILAEADN 60

Query: 100 DNIVRLLDVLTTGRYVYLVFEYL---DLDLGSFIRKHTIT 136
             +V+L        Y+YL+ EYL   D+ +   ++K T T
Sbjct: 61  PWVVKLYYSFQDENYLYLIMEYLPGGDM-MTLLMKKDTFT 99

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
          +++VE +G G +G+VYK  +++TG+  AIK++++  + E     +   +++LK+  H
Sbjct: 8  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE---EEIKQEINMLKKYSH 61

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 49  IGQGVFGEVYKCLNLETGKK-----VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           +G+G FG+V K        +     VA+KM+        +   L++  +LLK++ H +++
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRD-LLSEFNLLKQVNHPHVI 66

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIR 131
           +L    +    + L+ EY     L SF+R
Sbjct: 67  KLYGACSQDGPLLLIVEYAKYGSLRSFLR 95

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 22/107 (20%)

Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV-------PS 85
           +  E V    Y V++ +  G  G V+          VA K      +P+ V        +
Sbjct: 58  KAREVVASLGYTVIKTLTPGSEGRVF----------VATK----PGQPDPVVLKIGQKGT 103

Query: 86  YLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
            LI  + LL+ + H +++R+ D L +G    +V  +   DL +++ K
Sbjct: 104 TLIEAM-LLQNVNHPSVIRMKDTLVSGAITCMVLPHYSSDLYTYLTK 149

Length = 357

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHD 100
            ++++E IG+G +G+VYK  N + G   A+K+++  ++   V   + A  ++L+ L  H 
Sbjct: 23  TWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD---VDEEIEAEYNILQSLPNHP 79

Query: 101 NIVRLLDVL-----TTGRYVYLVFE 120
           N+V+   +        G  ++LV E
Sbjct: 80  NVVKFYGMFYKADKLVGGQLWLVLE 104

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 44  KVVEKIGQGVFGEVYKCL-NLETGKKVAIKMINIQNEPEGV-PSYLIAGVSLLKELEHDN 101
           +++ K+G G FGEV++ L N  T   VA+K +    +P  + P   +A   ++K+L H  
Sbjct: 9   QLLRKLGAGQFGEVWEGLWNNTT--PVAVKTL----KPGTMDPKDFLAEAQIMKKLRHPK 62

Query: 102 IVRLLDVLTTGRYVYLVFE 120
           +++L  V T    +Y+V E
Sbjct: 63  LIQLYAVCTLEEPIYIVTE 81

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH 191
           Y APE  ++   YS P D +A+GC   EMV+G+  F    KDH
Sbjct: 160 YMAPEI-LKEEPYSYPVDWFAMGCSIYEMVAGRTPF----KDH 197

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.97
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.97
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.97
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.97
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.97
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.96
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.96
KOG0605	550	consensus NDR and related serine/threonine kinases	99.96
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.96
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.96
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.96
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.96
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.95
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.95
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.95
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.95
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.95
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.95
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.95
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.94
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.94
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.94
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.94
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.94
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.94
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.94
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.94
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.94
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.94
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.94
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.94
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.94
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.94
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.93
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.93
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.93
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.93
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.93
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.93
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.93
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.93
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.93
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.93
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.93
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.93
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.93
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.93
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.93
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.93
KOG0610	459	consensus Putative serine/threonine protein kinase	99.93
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.92
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.92
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.92
KOG0589	426	consensus Serine/threonine protein kinase [General	99.92
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.92
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.92
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.92
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.92
PTZ00036	440	glycogen synthase kinase; Provisional	99.92
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.92
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.92
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.92
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.92
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.92
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.92
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.92
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.92
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.92
KOG0578	550	consensus p21-activated serine/threonine protein k	99.92
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.92
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.92
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.92
KOG0586	596	consensus Serine/threonine protein kinase [General	99.92
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.91
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.91
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.91
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.91
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.91
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.91
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.91
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.91
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.91
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.91
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.91
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.91
PTZ00283	496	serine/threonine protein kinase; Provisional	99.91
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.91
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.91
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.91
PHA02988	283	hypothetical protein; Provisional	99.91
KOG0198	313	consensus MEKK and related serine/threonine protei	99.91
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.91
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.91
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.91
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.91
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.91
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.91
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.91
PHA03212	391	serine/threonine kinase US3; Provisional	99.91
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.91
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.91
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.91
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.91
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.91
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.91
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.91
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.91
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.91
PTZ00267	478	NIMA-related protein kinase; Provisional	99.91
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.91
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.91
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.9
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.9
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.9
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.9
PLN00009	294	cyclin-dependent kinase A; Provisional	99.9
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.9
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.9
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.9
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.9
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.9
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.9
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.9
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.9
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.9
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.9
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.9
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.9
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.9
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.9
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.9
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.9
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.9
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.9
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.9
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.9
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.9
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.9
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.9
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.9
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.9
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.9
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.9
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.9
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.9
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.9
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.9
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.9
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.9
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.9
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.9
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.9
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.9
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.9
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.9
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.9
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.9
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.9
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.89
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.89
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.89
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.89
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.89
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.89
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.89
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.89
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.89
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.89
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.89
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.89
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.89
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.89
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.89
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.89
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.89
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.89
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.89
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.89
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.89
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.89
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.89
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.89
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.89
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.89
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.89
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.89
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.89
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.89
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.89
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.89
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.89
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.89
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.89
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.89
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.89
PTZ00284	467	protein kinase; Provisional	99.89
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.89
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.89
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.89
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.89
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.89
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.89
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.89
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.89
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.89
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.89
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.89
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.89
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.89
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.89
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.88
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.88
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.88
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.88
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.88
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.88
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.88
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.88
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.88
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.88
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.88
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.88
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.88
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.88
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.88
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.88
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.88
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.88
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.88
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.88
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.88
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.88
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.88
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.88
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.88
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.88
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.88
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.88
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.88
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.88
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.88
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.88
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.88
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.88
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.88
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.88
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.88
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.88
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.88
PHA03207	392	serine/threonine kinase US3; Provisional	99.87
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.87
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.87
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.87
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.87
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.87
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.87
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.87
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.87
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.87
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.87
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.87
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.87
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.87
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.87
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.87
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.87
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.87
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.87
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.87
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.87
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.87
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.87
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.87
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.87
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.87
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.87
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.87
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.87
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.87
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.87
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.87
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.87
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.87
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.87
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.87
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.87
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.87
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.87
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.87
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.86
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.86
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.86
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.86
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.86
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.86
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.86
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.86
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.86
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.86
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.86
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.86
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.86
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.86
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.86
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.86
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.86
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.86
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.86
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.86
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.86
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.86
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.86
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.86
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.86
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.86
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.86
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.86
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.86
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.86
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.86
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.86
PHA03209	357	serine/threonine kinase US3; Provisional	99.86
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.86
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.85
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.85
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.85
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.85
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.85
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.85
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.85
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.85
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.85
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.85
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.85
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.85
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.85
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.85
PHA03211	461	serine/threonine kinase US3; Provisional	99.85
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.85
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.85
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.85
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.85
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.85
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.84
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.84
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.84
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.84
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.84
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.84
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.84
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.84
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.84
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.84
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.84
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.84
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.84
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.84
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.83
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.83
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.83
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.83
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.83
PHA03210	501	serine/threonine kinase US3; Provisional	99.82
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.82
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.82
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.82
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.82
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.81
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.81
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.81
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.81
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.81
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.81
KOG0584	632	consensus Serine/threonine protein kinase [General	99.8
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.8
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.8
PHA02882	294	putative serine/threonine kinase; Provisional	99.79
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.79
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.78
KOG1152	772	consensus Signal transduction serine/threonine kin	99.78
KOG3653	534	consensus Transforming growth factor beta/activin	99.77
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.77
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.77
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.76
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.75
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.74
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.74
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.72
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.71
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.69
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.68
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.67
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.64
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.62
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.6
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.59
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.58
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.54
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.52
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.5
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.43
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.41
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.36
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.28
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.17
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.16
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.1
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.06
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.05
PRK09188	365	serine/threonine protein kinase; Provisional	99.05
PLN00181	793	protein SPA1-RELATED; Provisional	98.96
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.96
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.9
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.86
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.79
PRK10345	210	hypothetical protein; Provisional	98.74
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.68
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.64
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.6
PRK14879	211	serine/threonine protein kinase; Provisional	98.49
PRK12274	218	serine/threonine protein kinase; Provisional	98.42
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.4
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.37
smart00090	237	RIO RIO-like kinase.	98.3
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.17
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.17
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.1
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.07
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.99
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.99
KOG1243	690	consensus Protein kinase [General function predict	97.97
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	97.93
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.76
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.65
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.49
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.08
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.04
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.93
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.92
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.59
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	96.49
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.03
KOG1266	458	consensus Protein kinase [Signal transduction mech	94.98
KOG3087	229	consensus Serine/threonine protein kinase [General	94.72
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	94.66
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	94.41
PLN02876	822	acyl-CoA dehydrogenase	94.41
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	94.23
PRK09550	401	mtnK methylthioribose kinase; Reviewed	94.16
KOG0576	829	consensus Mitogen-activated protein kinase kinase	93.87
PRK10593	297	hypothetical protein; Provisional	93.79
PF01636	239	APH: Phosphotransferase enzyme family This family	93.44
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	93.41
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	92.56
COG0478	304	RIO-like serine/threonine protein kinase fused to	92.49
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	92.26
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	90.2
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	89.97
PLN02756	418	S-methyl-5-thioribose kinase	89.86
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	89.8
COG4248	637	Uncharacterized protein with protein kinase and he	85.44
KOG1235	538	consensus Predicted unusual protein kinase [Genera	85.41
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	85.29
KOG2270	520	consensus Serine/threonine protein kinase involved	85.07
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	83.97
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	82.69
KOG2137	700	consensus Protein kinase [Signal transduction mech	80.05

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-34  Score=230.29  Aligned_cols=159  Identities=35%  Similarity=0.629  Sum_probs=136.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|.+.+.||+|+||+||+|+++.++..||||.+.+........+.+..|+.+|+.++|||||++++++..++.+|+||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            57899999999999999999999999999999999877666677888999999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccc-----------------cccccCCc------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRP-----------------HIKEVGSP------  148 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------------~~~~~g~~------  148 (218)
                      |||++ +|.+|+..++..                           |.+|                 ++++||.+      
T Consensus        89 EyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~  168 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPG  168 (429)
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCch
Confidence            99996 999999987543                           3333                 34455443      


Q ss_pred             -----------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHh
Q 041487          149 -----------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYF  199 (218)
Q Consensus       149 -----------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~  199 (218)
                                 |||||+ .....|+.++|+||+|+++|++++|+.||+..+...+...++..
T Consensus       169 ~~a~tlcGSplYMAPEV-~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~  229 (429)
T KOG0595|consen  169 SMAETLCGSPLYMAPEV-IMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKG  229 (429)
T ss_pred             hHHHHhhCCccccCHHH-HHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcc
Confidence                       999995 44556999999999999999999999999987777777766654

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.97  E-value=9.7e-32  Score=209.52  Aligned_cols=164  Identities=35%  Similarity=0.625  Sum_probs=141.8

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +.|+.+..+|+|+||.|++|+++++|+.||||.+.....+....+...+|+.+|+.++|+|+|.++++|+....+++|+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            57888999999999999999999999999999997665666777889999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Ccccccc-----------ccCC--------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPHIK-----------EVGS--------------  147 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~~~-----------~~g~--------------  147 (218)
                      ||+.++.+-+...+..                            +++|.+.           +||.              
T Consensus        82 ~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDY  161 (396)
T KOG0593|consen   82 YCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDY  161 (396)
T ss_pred             ecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhh
Confidence            9997776665544332                            6666542           1222              


Q ss_pred             ----cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCc
Q 041487          148 ----PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTN  204 (218)
Q Consensus       148 ----~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~  204 (218)
                          .|.|||.+..+..|+.++||||+||++.||++|++.|++. +.+.+..+++.+|..++
T Consensus       162 VATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~p  223 (396)
T KOG0593|consen  162 VATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIP  223 (396)
T ss_pred             hhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCH
Confidence                2999999898899999999999999999999999999998 89999999999887654

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.6e-30  Score=214.13  Aligned_cols=170  Identities=36%  Similarity=0.704  Sum_probs=146.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RYVY  116 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~  116 (218)
                      ..+.|+-+++||+|.||.||+|++..+|..||+|.++.......-.....+|+.+|++++||||+++.++....  ..+|
T Consensus       115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siY  194 (560)
T KOG0600|consen  115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIY  194 (560)
T ss_pred             chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEE
Confidence            45568889999999999999999999999999999997777777788999999999999999999999998655  7999


Q ss_pred             EEEecCCCChHHHhhhcccC----------------------------Ccc-----------ccccccCCc---------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT----------------------------SIR-----------PHIKEVGSP---------  148 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~----------------------------~~~-----------~~~~~~g~~---------  148 (218)
                      +|+|||+.+|..++......                            |++           .++.+||.+         
T Consensus       195 lVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~  274 (560)
T KOG0600|consen  195 LVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSA  274 (560)
T ss_pred             EEEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCCc
Confidence            99999998888777654332                            222           233455543         


Q ss_pred             ----------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCcccchh
Q 041487          149 ----------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       149 ----------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                |.|||.+.+...|++.+|+||+||+|.||++|++.|.+. +.+++..|.+.+|.|.... |+
T Consensus       275 ~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~-W~  345 (560)
T KOG0600|consen  275 PYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDY-WP  345 (560)
T ss_pred             ccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhc-cc
Confidence                      999998888888999999999999999999999999998 8999999999999998766 44

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.1e-29  Score=213.41  Aligned_cols=176  Identities=22%  Similarity=0.416  Sum_probs=139.6

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..|...+.||+|+|+.||.+++..+|+.||+|++++.. .+....+.+.+|+++++.++|||||+++++|++.+++|+|.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            66999999999999999999999999999999998765 45677889999999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC--------------------------------------Cccccccc----------------
Q 041487          120 EYLDL-DLGSFIRKHTIT--------------------------------------SIRPHIKE----------------  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~--------------------------------------~~~~~~~~----------------  144 (218)
                      |+|.. +|..+.+.....                                      ....++.+                
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~T  177 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKT  177 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCcccccce
Confidence            99986 777776643221                                      22223333                


Q ss_pred             -cCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHh-cccCc--ccchhhhhhhccc
Q 041487          145 -VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYF-TALTN--YLVLPCFLSIMLL  217 (218)
Q Consensus       145 -~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~l~  217 (218)
                       +|++ |.|||++...+ .+..+||||+||++|-|++|++||...+.......++.. ...|.  +....+.+..||+
T Consensus       178 lCGTPNYIAPEVl~k~g-HsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~  254 (592)
T KOG0575|consen  178 LCGTPNYIAPEVLNKSG-HSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLR  254 (592)
T ss_pred             ecCCCcccChhHhccCC-CCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhc
Confidence             4544 99999777444 899999999999999999999999988555555555443 33333  4444567777765

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.97  E-value=7.8e-31  Score=218.80  Aligned_cols=172  Identities=30%  Similarity=0.467  Sum_probs=139.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|.+.+.||+|+||.||+|+.+.+.+.||+|.+.+....+...+.+.+|++++++++||||++++++|.....+|+|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            57999999999999999999999999999999998877777778899999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC---------------------------Ccccccc-----------c-----------------c
Q 041487          121 YLDLDLGSFIRKHTIT---------------------------SIRPHIK-----------E-----------------V  145 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~---------------------------~~~~~~~-----------~-----------------~  145 (218)
                      ||.++|..++...+..                           +++|.+.           +                 -
T Consensus        82 ~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsik  161 (808)
T KOG0597|consen   82 YAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIK  161 (808)
T ss_pred             hhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCceeeeecc
Confidence            9988887777554332                           4444331           1                 1


Q ss_pred             CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCcccchhhhhh
Q 041487          146 GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFLS  213 (218)
Q Consensus       146 g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (218)
                      |++ ||||| +..+++|+..+|.||+||++||+++|++||.......+.+.+..-...+++...++|.+
T Consensus       162 GtPlYmAPE-lv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~n  229 (808)
T KOG0597|consen  162 GTPLYMAPE-LVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVN  229 (808)
T ss_pred             CcccccCHH-HHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcccccHHHHH
Confidence            333 99999 56688899999999999999999999999988766666666554333344444444443

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.97  E-value=9.8e-30  Score=202.80  Aligned_cols=163  Identities=26%  Similarity=0.435  Sum_probs=132.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      ....++|+++++||+|+||+|++++.+++++.+|+|++++... .....++...|..++.+++||+||.++..|++...+
T Consensus        21 ~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kL  100 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKL  100 (357)
T ss_pred             cCChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeE
Confidence            4668999999999999999999999999999999999987763 345678899999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-------------------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-------------------------  142 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-------------------------  142 (218)
                      |+|+||+.| .|.-.+...+.-                           +.+|.+                         
T Consensus       101 ylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~  180 (357)
T KOG0598|consen  101 YLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD  180 (357)
T ss_pred             EEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCC
Confidence            999999987 555444432221                           333332                         


Q ss_pred             ---cccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhc
Q 041487          143 ---KEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFT  200 (218)
Q Consensus       143 ---~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~  200 (218)
                         ..+|++ |||||.+... .|+..+|.||||+++|+|++|.+||.+.+...+...+....
T Consensus       181 ~t~tfcGT~eYmAPEil~~~-gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k  241 (357)
T KOG0598|consen  181 ATRTFCGTPEYMAPEILLGK-GYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGK  241 (357)
T ss_pred             ccccccCCccccChHHHhcC-CCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCc
Confidence               334544 9999966655 59999999999999999999999999987666655555433

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.3e-31  Score=205.67  Aligned_cols=164  Identities=32%  Similarity=0.484  Sum_probs=135.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeee-eEEeCCE-E
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLD-VLTTGRY-V  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~-~~~~~~~-~  115 (218)
                      ....+|+++++||+|+||.||++.+..+|..+|.|.+.-...+....+.+..|+.+|+.++|||||++++ .|.++.. +
T Consensus        16 ~~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evl   95 (375)
T KOG0591|consen   16 KTLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVL   95 (375)
T ss_pred             ccHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhh
Confidence            3456799999999999999999999999999999999866677777889999999999999999999999 5666555 9


Q ss_pred             EEEEecCCC-ChHHHhhhcccC-----------------------------------Ccccccc----------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT-----------------------------------SIRPHIK----------------  143 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~-----------------------------------~~~~~~~----------------  143 (218)
                      +|+||+|+. +|++.++.....                                   +++|.+.                
T Consensus        96 nivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~  175 (375)
T KOG0591|consen   96 NIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLG  175 (375)
T ss_pred             HHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhH
Confidence            999999986 888877542211                                   4444331                


Q ss_pred             ------------ccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc
Q 041487          144 ------------EVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL  202 (218)
Q Consensus       144 ------------~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~  202 (218)
                                  ..|+| ||+|| ++....|+.++||||+||++|||+.-++||.+.+-..+...+....-+
T Consensus       176 r~l~s~~tfA~S~VGTPyYMSPE-~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~  246 (375)
T KOG0591|consen  176 RFLSSKTTFAHSLVGTPYYMSPE-RIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYP  246 (375)
T ss_pred             hHhcchhHHHHhhcCCCcccCHH-HHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCC
Confidence                        13444 89999 566666999999999999999999999999999888888888875443

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.96  E-value=4.5e-29  Score=191.40  Aligned_cols=170  Identities=39%  Similarity=0.674  Sum_probs=145.7

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +.|..++.+|+|.||.||+|++..+|+.||||.++.....+.......+|+..|+.++|+||+.++++|-..+.+.+|+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            46788899999999999999999999999999998776666666788999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Cccccc-----------cccCCc-------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVGSP-------------  148 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~~-------------  148 (218)
                      |++.+|...++.....                            |++|.+           .+||.+             
T Consensus        82 fm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~  161 (318)
T KOG0659|consen   82 FMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQ  161 (318)
T ss_pred             eccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccc
Confidence            9998888887765432                            444432           344332             


Q ss_pred             -----ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCcccchhhh
Q 041487          149 -----YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNYLVLPCF  211 (218)
Q Consensus       149 -----y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~~~~~~~  211 (218)
                           |.|||.+++.+.|+..+|+||.||++.||+.|.+-|++. +.+++..+.+.+|.|.+. .||++
T Consensus       162 V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~-~WP~~  229 (318)
T KOG0659|consen  162 VVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPD-QWPEM  229 (318)
T ss_pred             eeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcc-cCccc
Confidence                 999999999999999999999999999999999999998 899999999998887543 44443

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.96  E-value=8.3e-29  Score=205.40  Aligned_cols=159  Identities=27%  Similarity=0.498  Sum_probs=127.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|.+++.||+|+||.||+|+.+.+|..+|+|++++.. ....+.++...|-.+|...++|+||+++..|++..++
T Consensus       137 r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  137 RLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             cCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCee
Confidence            456789999999999999999999999999999999998776 4567789999999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-------------------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-------------------------  142 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-------------------------  142 (218)
                      |+||||++| ++.-.+......                           +++|.+                         
T Consensus       217 YLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~  296 (550)
T KOG0605|consen  217 YLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHR  296 (550)
T ss_pred             EEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhh
Confidence            999999964 443333322211                           111110                         


Q ss_pred             --------------------------------------------------cccCCc-ccCcccccCCCCCCCcchHHHHH
Q 041487          143 --------------------------------------------------KEVGSP-YKAPESRIRSSVYSTPHDVWAVG  171 (218)
Q Consensus       143 --------------------------------------------------~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG  171 (218)
                                                                        +.+|+| |+|||++...+ |+..+|+||||
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kg-Y~~~cDwWSLG  375 (550)
T KOG0605|consen  297 IESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKG-YGKECDWWSLG  375 (550)
T ss_pred             hhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCC-CCccccHHHHH
Confidence                                                              123444 99999666555 99999999999


Q ss_pred             HHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          172 CIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       172 ~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      |++|||+.|.+||.+.++....+.+
T Consensus       376 ~ImyEmLvGyPPF~s~tp~~T~rkI  400 (550)
T KOG0605|consen  376 CIMYEMLVGYPPFCSETPQETYRKI  400 (550)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9999999999999998655544443

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.3e-29  Score=201.49  Aligned_cols=169  Identities=30%  Similarity=0.494  Sum_probs=132.2

Q ss_pred             CCChhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-----CCchHHHHHHHHHHhhCCCCCee
Q 041487           29 TNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-----EGVPSYLIAGVSLLKELEHDNIV  103 (218)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv  103 (218)
                      .+++-..++...+.|.+.+.||.|+||.|-+|..+.+++.||||++.+....     ........+|+++|++++|||||
T Consensus       160 ~d~~~~~pks~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV  239 (475)
T KOG0615|consen  160 RDSSKVPPKSFNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIV  239 (475)
T ss_pred             chhccCccchhcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEE
Confidence            3334445566788899999999999999999999999999999999764321     12334567999999999999999


Q ss_pred             eeeeeEEeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-------------
Q 041487          104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-------------  142 (218)
Q Consensus       104 ~~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-------------  142 (218)
                      +++++|......|+||||+++ .|-+++..+...                           +++|.+             
T Consensus       240 ~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llK  319 (475)
T KOG0615|consen  240 RIKDFFEVPDSSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLK  319 (475)
T ss_pred             EEeeeeecCCceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEE
Confidence            999999999999999999987 888887665432                           444433             


Q ss_pred             -ccc----------------CCc-ccCcccccCCCC--CCCcchHHHHHHHHHHHHhCCCCCCCCCcch-HHHHHH
Q 041487          143 -KEV----------------GSP-YKAPESRIRSSV--YSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH-LSLIVR  197 (218)
Q Consensus       143 -~~~----------------g~~-y~aPE~~~~~~~--~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~-~~~~~~  197 (218)
                       .+|                |++ |.|||++...+.  +..++|+||+||+||-+++|.+||+....+. +...+.
T Consensus       320 ItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~  395 (475)
T KOG0615|consen  320 ITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQIL  395 (475)
T ss_pred             ecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHh
Confidence             333                433 999998877644  4458999999999999999999999873333 444443

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-29  Score=208.35  Aligned_cols=174  Identities=24%  Similarity=0.387  Sum_probs=137.5

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ....+....++.++.||+|.||.||.|..+ ....||+|.++....   ..+.|.+|+.+|++++|++||++++++..+.
T Consensus       199 d~wei~r~~l~l~~~LG~G~FG~V~~g~~~-~~~~vavk~ik~~~m---~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~  274 (468)
T KOG0197|consen  199 DPWEIPREELKLIRELGSGQFGEVWLGKWN-GSTKVAVKTIKEGSM---SPEAFLREAQIMKKLRHEKLVKLYGVCTKQE  274 (468)
T ss_pred             CCeeecHHHHHHHHHhcCCccceEEEEEEc-CCCcccceEEecccc---ChhHHHHHHHHHHhCcccCeEEEEEEEecCC
Confidence            344466677888999999999999999972 345899999985433   3367889999999999999999999999988


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------------------CccccccccCCc----
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------------------SIRPHIKEVGSP----  148 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------------~~~~~~~~~g~~----  148 (218)
                      .++|||||+.. +|.+|++.....                                        +...++++||.+    
T Consensus       275 piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  275 PIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIG  354 (468)
T ss_pred             ceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccC
Confidence            99999999986 999999973222                                        233355667765    


Q ss_pred             ---------------ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchhhhh
Q 041487          149 ---------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFL  212 (218)
Q Consensus       149 ---------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (218)
                                     |+|||.+..++ ++.++|||||||+|||++| |+.||++.........+.....++.+...|+.+
T Consensus       355 d~~Y~~~~~~kfPIkWtAPEa~~~~~-FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~v  433 (468)
T KOG0197|consen  355 DDEYTASEGGKFPIKWTAPEALNYGK-FSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEV  433 (468)
T ss_pred             CCceeecCCCCCCceecCHHHHhhCC-cccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHH
Confidence                           99999665555 9999999999999999999 999999995555555555556665555555544

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.1e-28  Score=209.07  Aligned_cols=177  Identities=28%  Similarity=0.385  Sum_probs=144.4

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecC-CCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ-NEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .+-|++.+.||.|+-|.|.+|+++.+|+.+|||++.+. ...+.+...+.+|+.+|+-+.|||++++|++|.++..+|+|
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylv   90 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLV   90 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEE
Confidence            46689999999999999999999999999999999876 46677788999999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccc-----------cccccCCc-----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEVGSP-----------  148 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~g~~-----------  148 (218)
                      .||+++ .|-+|+..++..                           +.+|           ++++||.+           
T Consensus        91 lEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeT  170 (786)
T KOG0588|consen   91 LEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLET  170 (786)
T ss_pred             EEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCCccccc
Confidence            999987 888988776554                           2222           23444443           


Q ss_pred             ------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc---ccchhhhhhhcc
Q 041487          149 ------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN---YLVLPCFLSIML  216 (218)
Q Consensus       149 ------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l  216 (218)
                            |.|||.+.+..+-+.++||||+||+||.|+||++||++.+...+...++......+   +....+.|..||
T Consensus       171 SCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml  247 (786)
T KOG0588|consen  171 SCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRRML  247 (786)
T ss_pred             cCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHh
Confidence                  99999666556667889999999999999999999999998888888887443333   223334444444

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.96  E-value=3.2e-28  Score=194.31  Aligned_cols=150  Identities=25%  Similarity=0.428  Sum_probs=125.3

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-E
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-Y  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~  114 (218)
                      ..+..++.+.++.||+|+.|+|+++.++.++..+|+|.+. ...+....+.+.+|+++++.++||+||++|+.|.... .
T Consensus        74 ~~i~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~-~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~  152 (364)
T KOG0581|consen   74 NGISLSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVIL-LNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEE  152 (364)
T ss_pred             cccCHHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeec-ccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCce
Confidence            3455668888999999999999999999999999999994 3345566788999999999999999999999999888 5


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      ++++||||++ +|++++...+..                            |++|.+           .+||        
T Consensus       153 isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS  232 (364)
T KOG0581|consen  153 ISICMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS  232 (364)
T ss_pred             EEeehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh
Confidence            9999999998 999988753221                            445533           2232        


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ..||||| .+++..|+.++||||||++++|+++|+.||...
T Consensus       233 ~a~tfvGT~~YMsPE-Ri~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  233 IANTFVGTSAYMSPE-RISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             hcccccccccccChh-hhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence                    2399999 567777999999999999999999999999874

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.95  E-value=4.3e-28  Score=188.56  Aligned_cols=160  Identities=26%  Similarity=0.411  Sum_probs=132.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|++++.||.|+||.|.+++++.++..+|+|++.+.. ..-.+.++..+|..+|+.+.||+++++++.|.+.+.+|
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~ly  120 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLY  120 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEE
Confidence            66789999999999999999999999999999999998654 34466889999999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc-------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE-------------  144 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~-------------  144 (218)
                      +||||+++ -|-.++++.+.-                           +.+|++           .+             
T Consensus       121 mvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~T  200 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWT  200 (355)
T ss_pred             EEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCcEEE
Confidence            99999987 666666653321                           333332           22             


Q ss_pred             -cCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          145 -VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       145 -~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                       +|++ |+||| +++.+.|+.++|.|||||++|||+.|.+||...+...+...+..
T Consensus       201 lCGTPeYLAPE-ii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~  255 (355)
T KOG0616|consen  201 LCGTPEYLAPE-IIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILE  255 (355)
T ss_pred             ecCCccccChH-HhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHh
Confidence             4544 99999 56677799999999999999999999999998866666555543

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=9.2e-28  Score=204.16  Aligned_cols=161  Identities=22%  Similarity=0.384  Sum_probs=129.7

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~  114 (218)
                      .+..++|.++++||+|+||+|+++..+.+++.+|||.+++.. ..++..+....|..++... +||+++.++.+|+...+
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~  443 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH  443 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe
Confidence            567889999999999999999999999999999999999876 5567788899999998888 59999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhh------------------------hcccC--Cc----------------------------c
Q 041487          115 VYLVFEYLDL-DLGSFIR------------------------KHTIT--SI----------------------------R  139 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~------------------------~~~~~--~~----------------------------~  139 (218)
                      +|+||||+.| ++..+..                        .++..  |.                            .
T Consensus       444 l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~  523 (694)
T KOG0694|consen  444 LFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGD  523 (694)
T ss_pred             EEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCCC
Confidence            9999999965 3222221                        11110  11                            1


Q ss_pred             ccccccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          140 PHIKEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       140 ~~~~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                      .....+|++ |+|||. ..+..|+.++|.|||||++|||+.|+.||++.+-+.+..-+..
T Consensus       524 ~TsTfCGTpey~aPEi-l~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~  582 (694)
T KOG0694|consen  524 RTSTFCGTPEFLAPEV-LTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVN  582 (694)
T ss_pred             ccccccCChhhcChhh-hccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Confidence            112344555 999995 5555699999999999999999999999999987777776664

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-28  Score=205.22  Aligned_cols=210  Identities=20%  Similarity=0.263  Sum_probs=168.7

Q ss_pred             hHHHHHHHHhhhhhhhhcccc-ccCCChhhhhhhhccceeEEEEeeecCceEEEEEEEccCC----cEEEEEEeecC-CC
Q 041487            6 QIHDLFRTNMKKVKDCCYKVV-KKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETG----KKVAIKMINIQ-NE   79 (218)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~----~~vaiK~~~~~-~~   79 (218)
                      .+.+++..++.....+..... ...+-..+..++.+++-.+.++||+|+||.||+|..+..+    ..||+|..+.. ..
T Consensus       121 si~~li~~~~~~~~~~~~~~~~L~~PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~  200 (474)
T KOG0194|consen  121 TISELVNYYKFSKLEITGKNFFLKRPIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSEL  200 (474)
T ss_pred             cHHHHHHHHHhcccceeccceeecccccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccc
Confidence            346677777777776666555 5666668889999999999999999999999999976542    23899998753 35


Q ss_pred             CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-ChHHHhhhcccC----------------------
Q 041487           80 PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------  136 (218)
Q Consensus        80 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------  136 (218)
                      .......+.+|+++++.++|||||++||+...+..+++|||+|.+ +|.+|+++....                      
T Consensus       201 ~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~  280 (474)
T KOG0194|consen  201 TKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHS  280 (474)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence            667788999999999999999999999999999999999999998 999999987631                      


Q ss_pred             -----------------CccccccccCCc------------------ccCcccccCCCCCCCcchHHHHHHHHHHHHh-C
Q 041487          137 -----------------SIRPHIKEVGSP------------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-G  180 (218)
Q Consensus       137 -----------------~~~~~~~~~g~~------------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g  180 (218)
                                       ...+++++||..                  |+|||.+..+ .|+.++|||||||++||+++ |
T Consensus       281 k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~-~~s~kTDV~sfGV~~~Eif~~g  359 (474)
T KOG0194|consen  281 KNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTG-IFSFKTDVWSFGVLLWEIFENG  359 (474)
T ss_pred             CCCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccC-ccccccchhheeeeEEeeeccC
Confidence                             122355666543                  9999965555 79999999999999999999 8


Q ss_pred             CCCCCCCCcchHHHHH-HHhcccCcccchhhhhhhcc
Q 041487          181 KPLFPCGKKDHLSLIV-RYFTALTNYLVLPCFLSIML  216 (218)
Q Consensus       181 ~~Pf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  216 (218)
                      ..||.+.....+...+ ....+.+.+...|..+..++
T Consensus       360 ~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~  396 (474)
T KOG0194|consen  360 AEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVM  396 (474)
T ss_pred             CCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHH
Confidence            9999999666666666 65667777777777776554

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-27  Score=198.61  Aligned_cols=179  Identities=25%  Similarity=0.422  Sum_probs=140.9

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~  114 (218)
                      .....+|.+.+.||+|+|++|++|+++.++..+|||++.+.. ..+...+...+|-.+|..+ .||.|++++..|+++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            556788999999999999999999999999999999998765 3445567788899999999 89999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV----------  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~----------  145 (218)
                      +|+|+||++. +|.++|.+.+.-                           |++|+           +.+|          
T Consensus       149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~  228 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQ  228 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhh
Confidence            9999999986 899988876543                           33332           2333          


Q ss_pred             --------------------CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHh-cccC
Q 041487          146 --------------------GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYF-TALT  203 (218)
Q Consensus       146 --------------------g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~-~~~~  203 (218)
                                          |++ |.+|| +..++..++.+|||+|||++|.|+.|++||-..+...+.+.+..+ ...+
T Consensus       229 ~~~~~~~~~~~a~s~~~SFVGTAeYVSPE-lL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp  307 (604)
T KOG0592|consen  229 KSQENPVDPNQASSRRSSFVGTAEYVSPE-LLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFP  307 (604)
T ss_pred             ccccCccCcccccCcccceeeeecccCHH-HhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCC
Confidence                                332 99999 566666899999999999999999999999988666655555543 3333


Q ss_pred             c--ccchhhhhhhcc
Q 041487          204 N--YLVLPCFLSIML  216 (218)
Q Consensus       204 ~--~~~~~~~~~~~l  216 (218)
                      +  +....+.+.++|
T Consensus       308 ~~fp~~a~dLv~KLL  322 (604)
T KOG0592|consen  308 EGFPEDARDLIKKLL  322 (604)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            3  233344444444

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.95  E-value=1.4e-27  Score=188.45  Aligned_cols=165  Identities=32%  Similarity=0.622  Sum_probs=137.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCCEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGRYVYLV  118 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~lv  118 (218)
                      +.|+.++.|++|+||.||+|+++.+++.||+|.++.........-.-.+|+.+|.+++|||||.+-++..  .-+.+|+|
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            4588899999999999999999999999999999866555555667889999999999999999999875  34569999


Q ss_pred             EecCCCChHHHhhhcccC----------------------------Cccc-----------cccccCCc-----------
Q 041487          119 FEYLDLDLGSFIRKHTIT----------------------------SIRP-----------HIKEVGSP-----------  148 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~~~----------------------------~~~~-----------~~~~~g~~-----------  148 (218)
                      ||||+.+|...+..-...                            |.++           ++.+||.+           
T Consensus       156 Me~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T  235 (419)
T KOG0663|consen  156 MEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYT  235 (419)
T ss_pred             HHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCcccCc
Confidence            999987776665442211                            2222           23445543           


Q ss_pred             -------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCcc
Q 041487          149 -------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       149 -------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~  205 (218)
                             |.|||.+.....|+.+.|+||+||++.|++++++.|++. +.+.+.++.+.+|.|...
T Consensus       236 ~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~  300 (419)
T KOG0663|consen  236 PLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEA  300 (419)
T ss_pred             ceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccc
Confidence                   999998888888999999999999999999999999998 899999999998887654

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-28  Score=201.67  Aligned_cols=168  Identities=35%  Similarity=0.603  Sum_probs=144.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCC-EE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGR-YV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~-~~  115 (218)
                      +..++|+++++||.|.||.||+|+.+.++..||||.+++..-.. ..-.-.||+..|++++ ||||+++.+++.+.+ .+
T Consensus         7 ~~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~-ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L   85 (538)
T KOG0661|consen    7 IFMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSW-EECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRIL   85 (538)
T ss_pred             hHHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccH-HHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceE
Confidence            45688999999999999999999999999999999998665443 2234568999999998 999999999999888 99


Q ss_pred             EEEEecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccCCc--------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVGSP--------  148 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g~~--------  148 (218)
                      |+|||||+..|.+.++.+...                            |.+|+           +++||.+        
T Consensus        86 ~fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpP  165 (538)
T KOG0661|consen   86 YFVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPP  165 (538)
T ss_pred             eeeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccCCC
Confidence            999999999999988776332                            44443           3556654        


Q ss_pred             ---------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCccc
Q 041487          149 ---------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNYL  206 (218)
Q Consensus       149 ---------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~~  206 (218)
                               |.|||++.+...|+.+.|+|++||+++|+++-++.|+|. +.+.+.++.+.+|.|....
T Consensus       166 YTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~  233 (538)
T KOG0661|consen  166 YTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDS  233 (538)
T ss_pred             cchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCcccc
Confidence                     999999999999999999999999999999999999999 8999999999999886643

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=200.58  Aligned_cols=162  Identities=33%  Similarity=0.613  Sum_probs=135.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-C-----CCeeeeeeeEEeCC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-H-----DNIVRLLDVLTTGR  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h-----~~iv~~~~~~~~~~  113 (218)
                      ..+|.+.+.||+|+||+|.+|.+..+++.||||+++.   ..........|+.+|..++ |     -|+|+++++|..++
T Consensus       185 ~~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN---~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~  261 (586)
T KOG0667|consen  185 AYRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKN---KKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN  261 (586)
T ss_pred             EEEEEEEEEecccccceeEEEEecCCCcEEEEEeecc---ChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc
Confidence            3468999999999999999999999999999999973   3334455667888888875 3     37999999999999


Q ss_pred             EEEEEEecCCCChHHHhhhcccC-----------------------------Cccc-------------cccccCCc---
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRP-------------HIKEVGSP---  148 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~-------------~~~~~g~~---  148 (218)
                      ++|||.|..+-+|.+|++...-.                             |.+|             ++.+||++   
T Consensus       262 HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~  341 (586)
T KOG0667|consen  262 HLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFE  341 (586)
T ss_pred             ceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEeccccccc
Confidence            99999999999999999875443                             3333             34567765   


Q ss_pred             ------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCcc
Q 041487          149 ------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       149 ------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~  205 (218)
                                  |.|||++ -+.+|+.+.|+|||||+++||++|.+.|++. +.+.+..+++.+|.|++.
T Consensus       342 ~q~vytYiQSRfYRAPEVI-LGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~  410 (586)
T KOG0667|consen  342 SQRVYTYIQSRFYRAPEVI-LGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPK  410 (586)
T ss_pred             CCcceeeeeccccccchhh-ccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHH
Confidence                        9999954 4666999999999999999999999999998 889999999999977653

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.94  E-value=6.4e-26  Score=183.11  Aligned_cols=159  Identities=40%  Similarity=0.706  Sum_probs=125.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|.+.+.||+|+||.||+|.++.++..||+|.++... .......+.+|+.+++.++||||+++++++......++|
T Consensus         3 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (288)
T cd07871           3 KLETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEH-EEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLV   81 (288)
T ss_pred             ccccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccc-cCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEE
Confidence            3578999999999999999999999999999999987543 223345678999999999999999999999999999999


Q ss_pred             EecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC-------------
Q 041487          119 FEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------------  146 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------------  146 (218)
                      |||++++|.+++......                            +++|.           +.++|             
T Consensus        82 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~  161 (288)
T cd07871          82 FEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYS  161 (288)
T ss_pred             EeCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcccc
Confidence            999999998887653221                            22221           12222             


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHH
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRY  198 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~~  198 (218)
                           ..|+|||.+.+...++.++||||+||++|+|++|+.||.+.+. +.+..+.+.
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~  219 (288)
T cd07871         162 NEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRL  219 (288)
T ss_pred             CceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence                 2399999766666689999999999999999999999987743 333344333

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4.8e-26  Score=189.01  Aligned_cols=181  Identities=28%  Similarity=0.449  Sum_probs=137.4

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC---CCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP---EGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTG  112 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~  112 (218)
                      ....++|.+.+.||+|+||+|+.|.+..++..||+|++.+....   ....+.+.+|+.+++++. ||||+++++++...
T Consensus        13 ~~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~   92 (370)
T KOG0583|consen   13 QLSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATP   92 (370)
T ss_pred             ccccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecC
Confidence            35678999999999999999999999999999999987764221   245677889999999998 99999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccc------------ccccc-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP------------HIKEV-------  145 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~------------~~~~~-------  145 (218)
                      ..+++|||||.+ .|.+++...+..                           |+++            ++.+|       
T Consensus        93 ~~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~  172 (370)
T KOG0583|consen   93 TKIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP  172 (370)
T ss_pred             CeEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccC
Confidence            999999999997 999999874332                           1221            12222       


Q ss_pred             ----------CC-cccCcccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHh-cccCc---ccchh
Q 041487          146 ----------GS-PYKAPESRIRSS-VYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYF-TALTN---YLVLP  209 (218)
Q Consensus       146 ----------g~-~y~aPE~~~~~~-~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~-~~~~~---~~~~~  209 (218)
                                |+ +|+|||.+.... +-+.++||||+||+||.|++|+.||+..+...+...+... ...+.   +...-
T Consensus       173 ~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~S~~~~  252 (370)
T KOG0583|consen  173 GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLLSPEAR  252 (370)
T ss_pred             CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcCCHHHH
Confidence                      32 399999666555 4558899999999999999999999987666666654432 22222   33445


Q ss_pred             hhhhhccc
Q 041487          210 CFLSIMLL  217 (218)
Q Consensus       210 ~~~~~~l~  217 (218)
                      ++++.||.
T Consensus       253 ~Li~~mL~  260 (370)
T KOG0583|consen  253 SLIEKMLV  260 (370)
T ss_pred             HHHHHHcC
Confidence            55666654

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.94  E-value=3.1e-26  Score=188.40  Aligned_cols=182  Identities=22%  Similarity=0.267  Sum_probs=135.1

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ...+..++|++.+.||+|+||.||+|.++.+++.||+|++.... ......+.+.+|+.++++++||||+++++++...+
T Consensus        12 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   91 (329)
T PTZ00263         12 TSSWKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDEN   91 (329)
T ss_pred             cCCCCchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCC
Confidence            34456788999999999999999999999999999999997543 23344677899999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC--------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG--------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g--------  146 (218)
                      ..+++|||+.+ +|.+++......                           +++|.           +.++|        
T Consensus        92 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  171 (329)
T PTZ00263         92 RVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR  171 (329)
T ss_pred             EEEEEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCC
Confidence            99999999987 888887654321                           22222           12222        


Q ss_pred             ------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc-C--cccchhhhhhhcc
Q 041487          147 ------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL-T--NYLVLPCFLSIML  216 (218)
Q Consensus       147 ------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l  216 (218)
                            + .|+|||.+ .+..++.++|||||||++|+|++|+.||...+.......+...... +  .+..+.+++..||
T Consensus       172 ~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L  250 (329)
T PTZ00263        172 TFTLCGTPEYLAPEVI-QSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNWFDGRARDLVKGLL  250 (329)
T ss_pred             cceecCChhhcCHHHH-cCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHh
Confidence                  2 39999954 4555899999999999999999999999876554444443322111 1  1223445666665


Q ss_pred             c
Q 041487          217 L  217 (218)
Q Consensus       217 ~  217 (218)
                      +
T Consensus       251 ~  251 (329)
T PTZ00263        251 Q  251 (329)
T ss_pred             h
Confidence            3

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=2.8e-26  Score=185.57  Aligned_cols=176  Identities=23%  Similarity=0.326  Sum_probs=131.6

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|.++.+++.+|+|.+..... .....+.+.+|+.+++.++||||+++++.+.+...++++|
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            479999999999999999999998999999999875432 2234567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+++ +|.+++......                           +++|.           +.++|              
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~g  160 (291)
T cd05612          81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCG  160 (291)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccC
Confidence            99987 898887654321                           22221           12222              


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc---Ccccchhhhhhhccc
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL---TNYLVLPCFLSIMLL  217 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~  217 (218)
                       ..|+|||. ..+..++.++|||||||++|+|++|+.||...+...+...+......   ..+..+-+++..||+
T Consensus       161 t~~y~aPE~-~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~  234 (291)
T cd05612         161 TPEYLAPEV-IQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLV  234 (291)
T ss_pred             ChhhcCHHH-HcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcC
Confidence             23999995 45555899999999999999999999999887555444443332111   113344456666654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.94  E-value=3.8e-26  Score=188.79  Aligned_cols=184  Identities=20%  Similarity=0.291  Sum_probs=136.0

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCC-cEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~-~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      .....+..++|++.+.||+|+||.||+|.++..+ ..||+|.+.+.. ......+.+.+|+.+++.++||||+++++++.
T Consensus        22 ~~~~~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~  101 (340)
T PTZ00426         22 KRKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFK  101 (340)
T ss_pred             ccCCCCChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEE
Confidence            4445577889999999999999999999876554 689999987543 23345677889999999999999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC-----
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG-----  146 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g-----  146 (218)
                      .....++||||+.+ +|.+++......                           +++|.           +.++|     
T Consensus       102 ~~~~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~  181 (340)
T PTZ00426        102 DESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVV  181 (340)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeec
Confidence            99999999999976 888888654321                           22221           12222     


Q ss_pred             ---------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhc---ccCcccchhhhhh
Q 041487          147 ---------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFT---ALTNYLVLPCFLS  213 (218)
Q Consensus       147 ---------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  213 (218)
                               + .|+|||.+ .+..++.++|||||||++|+|++|+.||...+.......+....   +...+....++++
T Consensus       182 ~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~  260 (340)
T PTZ00426        182 DTRTYTLCGTPEYIAPEIL-LNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKFLDNNCKHLMK  260 (340)
T ss_pred             CCCcceecCChhhcCHHHH-hCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence                     2 39999965 45558899999999999999999999999876554444433221   1112334456666


Q ss_pred             hccc
Q 041487          214 IMLL  217 (218)
Q Consensus       214 ~~l~  217 (218)
                      .||+
T Consensus       261 ~~l~  264 (340)
T PTZ00426        261 KLLS  264 (340)
T ss_pred             HHcc
Confidence            6664

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.5e-27  Score=207.06  Aligned_cols=164  Identities=28%  Similarity=0.467  Sum_probs=127.8

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeee
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLD  107 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~  107 (218)
                      .....+...+....+.||+|+||.||+|+.-     .....||||.++.. .+....+.|.+|++++..++|||||++++
T Consensus       478 ~~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~-a~~~~~~dF~REaeLla~l~H~nIVrLlG  556 (774)
T KOG1026|consen  478 LKVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK-AENQARQDFRREAELLAELQHPNIVRLLG  556 (774)
T ss_pred             cceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccc-ccHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence            3344466677888999999999999999854     24567999998743 23335789999999999999999999999


Q ss_pred             eEEeCCEEEEEEecCCC-ChHHHhhhcccC--------------------------------------------------
Q 041487          108 VLTTGRYVYLVFEYLDL-DLGSFIRKHTIT--------------------------------------------------  136 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~--------------------------------------------------  136 (218)
                      +|..++.+++|+|||.. +|.+|+..+...                                                  
T Consensus       557 VC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLV  636 (774)
T KOG1026|consen  557 VCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLV  636 (774)
T ss_pred             EEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhcee
Confidence            99999999999999986 999999765432                                                  


Q ss_pred             --CccccccccCCc--------------------ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHH
Q 041487          137 --SIRPHIKEVGSP--------------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLS  193 (218)
Q Consensus       137 --~~~~~~~~~g~~--------------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~  193 (218)
                        ....+++++|..                    ||+||.+. .+.++..+|||||||+|||+++ |+.||.+...+..-
T Consensus       637 ge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIl-y~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVI  715 (774)
T KOG1026|consen  637 GENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESIL-YGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVI  715 (774)
T ss_pred             ccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhh-cCcccchhhhhhhhhhhhhhhccccCcccccchHHHH
Confidence              111122334332                    99999655 4559999999999999999999 99999998444444


Q ss_pred             HHHHH
Q 041487          194 LIVRY  198 (218)
Q Consensus       194 ~~~~~  198 (218)
                      ..++.
T Consensus       716 e~i~~  720 (774)
T KOG1026|consen  716 ECIRA  720 (774)
T ss_pred             HHHHc
Confidence            44443

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.94  E-value=1.7e-25  Score=181.82  Aligned_cols=147  Identities=41%  Similarity=0.696  Sum_probs=119.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.++.++..||+|.++.... ......+.+|+.+++.++||||+++++++......++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEE-EGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVF   82 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccc-cccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEE
Confidence            5789999999999999999999988999999999875432 223456778999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+.++|.+++......                            +++|.           +.++|              
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~  162 (303)
T cd07869          83 EYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSN  162 (303)
T ss_pred             ECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCC
Confidence            99998988887654211                            22221           12222              


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                          ..|+|||.+.....++.++||||+||++|+|++|+.||.+.
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  207 (303)
T cd07869         163 EVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGM  207 (303)
T ss_pred             CcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                23999997666666889999999999999999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.94  E-value=9.6e-27  Score=185.54  Aligned_cols=159  Identities=36%  Similarity=0.639  Sum_probs=131.8

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----CEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----RYV  115 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~  115 (218)
                      =.|...+++|.|+||.||+|....+++.+|||..-..   .   +.-.+|+++|+.++|||||++..+|...     -++
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d---~---r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~l   97 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQD---K---RYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYL   97 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCC---C---CcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHH
Confidence            3588899999999999999999999999999986422   1   2344799999999999999999888522     257


Q ss_pred             EEEEecCCCChHHHhhhc-----ccC--------------------------Cccccc------------cccCCc----
Q 041487          116 YLVFEYLDLDLGSFIRKH-----TIT--------------------------SIRPHI------------KEVGSP----  148 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~-----~~~--------------------------~~~~~~------------~~~g~~----  148 (218)
                      .+||||++.+|.++++..     ...                          |++|.+            .+||++    
T Consensus        98 nlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~  177 (364)
T KOG0658|consen   98 NLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLV  177 (364)
T ss_pred             HHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeec
Confidence            899999999999988742     111                          555543            456665    


Q ss_pred             -------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCcc
Q 041487          149 -------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       149 -------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~  205 (218)
                                   |.|||.+++...|+.+.||||.||++.||+-|++.|+|. ..+++..+++.+|.|+..
T Consensus       178 ~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e  248 (364)
T KOG0658|consen  178 KGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTRE  248 (364)
T ss_pred             cCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHH
Confidence                         999998888888999999999999999999999999998 788999999999988753

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.94  E-value=1.7e-25  Score=180.18  Aligned_cols=146  Identities=32%  Similarity=0.623  Sum_probs=117.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|+||.||+|+++.+++.+|+|.+..........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            46999999999999999999999999999999998655445556788899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Ccccc-----------cccc----------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~----------------  145 (218)
                      |+++++.+.+......                            +++|.           +.++                
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~  160 (287)
T cd07848          81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTE  160 (287)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccc
Confidence            9988655544332110                            11111           1111                


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                        | ..|+|||.+. +..++.++|||||||++|+|++|+.||...
T Consensus       161 ~~~~~~y~aPE~~~-~~~~~~~~DiwslGvil~el~~g~~pf~~~  204 (287)
T cd07848         161 YVATRWYRSPELLL-GAPYGKAVDMWSVGCILGELSDGQPLFPGE  204 (287)
T ss_pred             cccccccCCcHHHc-CCCCCCchhHHhHHHHHHHHHhCCCCCCCC
Confidence              1 2399999654 455899999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.94  E-value=1.1e-25  Score=187.57  Aligned_cols=153  Identities=25%  Similarity=0.431  Sum_probs=121.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|.++.+++.||+|++++.. ........+.+|+.++..++|++|+++++.+.+...+|+||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            47999999999999999999999999999999997543 23344567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccc----------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKE----------------  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~----------------  144 (218)
                      ||+++ +|.+++......                           +++|.           +.+                
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~  160 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFY  160 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccccc
Confidence            99987 888887654321                           11111           111                


Q ss_pred             ------------------------------------cCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 ------------------------------------VGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 ------------------------------------~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                                          .|+ .|+|||.+. +..++.++|||||||++|+|++|+.||.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~-~~~~~~~~DvwSlGvil~ell~G~~Pf~~~  239 (363)
T cd05628         161 RNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFM-QTGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (363)
T ss_pred             ccccccccccccccccccccccchhhhccccccccccCCccccCHHHHc-CCCCCCchhhhhhHHHHHHHHhCCCCCCCC
Confidence                                                222 399999654 555899999999999999999999999877


Q ss_pred             CcchHHH
Q 041487          188 KKDHLSL  194 (218)
Q Consensus       188 ~~~~~~~  194 (218)
                      +......
T Consensus       240 ~~~~~~~  246 (363)
T cd05628         240 TPQETYK  246 (363)
T ss_pred             CHHHHHH
Confidence            5544443

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.2e-26  Score=190.94  Aligned_cols=150  Identities=29%  Similarity=0.441  Sum_probs=119.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++++.||+|+||.||++.+..+++.||+|.+.+.. ......+.+.+|+.+++.++||||+++++++.+...+|+||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            47999999999999999999999999999999986543 23345677889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccc----------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKE----------------  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~----------------  144 (218)
                      ||+++ +|.+++......                           +++|.           +.+                
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~  160 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYY  160 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeecccccccccccccccc
Confidence            99976 888877543221                           22221           111                


Q ss_pred             ------------------------------------------------cCC-cccCcccccCCCCCCCcchHHHHHHHHH
Q 041487          145 ------------------------------------------------VGS-PYKAPESRIRSSVYSTPHDVWAVGCIFA  175 (218)
Q Consensus       145 ------------------------------------------------~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~  175 (218)
                                                                      .|+ .|+|||.+ .+..++.++|||||||++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvil~  239 (377)
T cd05629         161 QKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIF-LQQGYGQECDWWSLGAIMF  239 (377)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHH-ccCCCCCceeeEecchhhh
Confidence                                                            132 39999954 4555899999999999999


Q ss_pred             HHHhCCCCCCCCCcch
Q 041487          176 EMVSGKPLFPCGKKDH  191 (218)
Q Consensus       176 ~l~tg~~Pf~~~~~~~  191 (218)
                      +|++|+.||...+...
T Consensus       240 elltG~~Pf~~~~~~~  255 (377)
T cd05629         240 ECLIGWPPFCSENSHE  255 (377)
T ss_pred             hhhcCCCCCCCCCHHH
Confidence            9999999998765433

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.94  E-value=9.4e-26  Score=189.11  Aligned_cols=149  Identities=25%  Similarity=0.456  Sum_probs=120.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|++++.||+|+||.||+|.+..+++.||+|++++.. ......+.+.+|+.+++.++|+||+++++++.+...+++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            5899999999999999999999999999999997643 334456788999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc----------------
Q 041487          121 YLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~----------------  145 (218)
                      |+++ +|.+++......                           +++|.           +.++                
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~  161 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQ  161 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccccccccccccc
Confidence            9976 888877553321                           12111           1122                


Q ss_pred             ------------------------------------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHH
Q 041487          146 ------------------------------------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAE  176 (218)
Q Consensus       146 ------------------------------------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~  176 (218)
                                                                      | ..|+|||.+. +..++.++|||||||++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-~~~~~~~~DiwSlG~il~e  240 (381)
T cd05626         162 KGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLL-RKGYTQLCDWWSVGVILFE  240 (381)
T ss_pred             ccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHc-CCCCCCccceeehhhHHHH
Confidence                                                            2 2499999654 4558999999999999999


Q ss_pred             HHhCCCCCCCCCcch
Q 041487          177 MVSGKPLFPCGKKDH  191 (218)
Q Consensus       177 l~tg~~Pf~~~~~~~  191 (218)
                      |++|+.||...+...
T Consensus       241 lltG~~Pf~~~~~~~  255 (381)
T cd05626         241 MLVGQPPFLAPTPTE  255 (381)
T ss_pred             HHhCCCCCcCCCHHH
Confidence            999999998765443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.4e-25  Score=184.79  Aligned_cols=152  Identities=23%  Similarity=0.487  Sum_probs=122.1

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++++... .......+.+|+.++..++||||+++++++...+..|+||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            469999999999999999999999999999999975432 2244567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+++ +|.+++......                           ++++.           +.++|              
T Consensus        81 e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~g  160 (333)
T cd05600          81 EYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVG  160 (333)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCccc
Confidence            99987 999888654321                           22221           12222              


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                       ..|+|||.+. +..++.++|||||||++|+|++|+.||...+.....
T Consensus       161 t~~y~aPE~~~-~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~  207 (333)
T cd05600         161 SPDYMAPEVLR-GKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETW  207 (333)
T ss_pred             CccccChhHhc-CCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHH
Confidence             2399999554 446899999999999999999999999887554443

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.94  E-value=7.3e-26  Score=186.77  Aligned_cols=179  Identities=25%  Similarity=0.303  Sum_probs=132.1

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcE-EEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~-vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ....++.....+.+.||.|+||+||+|..  .|.. ||+|++..........+.|.+|+.++.+++|||||++++++...
T Consensus        34 ~~~~i~~~~l~~~~~iG~G~~g~V~~~~~--~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~  111 (362)
T KOG0192|consen   34 PEEEIDPDELPIEEVLGSGSFGTVYKGKW--RGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSP  111 (362)
T ss_pred             cceecChHHhhhhhhcccCCceeEEEEEe--CCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            34556677778888899999999999988  5555 99999986554444478999999999999999999999999877


Q ss_pred             C-EEEEEEecCCC-ChHHHhhhc--ccC----------------------C------c------------cccccccCC-
Q 041487          113 R-YVYLVFEYLDL-DLGSFIRKH--TIT----------------------S------I------------RPHIKEVGS-  147 (218)
Q Consensus       113 ~-~~~lv~E~~~~-~L~~~~~~~--~~~----------------------~------~------------~~~~~~~g~-  147 (218)
                      . .+++||||+++ +|.+++...  ...                      .      .            ..++.+||. 
T Consensus       112 ~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGls  191 (362)
T KOG0192|consen  112 PGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLS  191 (362)
T ss_pred             CCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccc
Confidence            7 79999999987 999988662  111                      0      0            112233332 


Q ss_pred             -----------------cccCcccccC-CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH-HHHHHhcccCcccch
Q 041487          148 -----------------PYKAPESRIR-SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS-LIVRYFTALTNYLVL  208 (218)
Q Consensus       148 -----------------~y~aPE~~~~-~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~-~~~~~~~~~~~~~~~  208 (218)
                                       .|||||.+.+ ...|+.++||||||+++|||+||+.||......... .++.....++.+...
T Consensus       192 r~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~  271 (362)
T KOG0192|consen  192 REKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKEC  271 (362)
T ss_pred             eeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccC
Confidence                             3999996554 467999999999999999999999999988553333 333333444434434


Q ss_pred             hhhhhh
Q 041487          209 PCFLSI  214 (218)
Q Consensus       209 ~~~~~~  214 (218)
                      |..+..
T Consensus       272 ~~~l~~  277 (362)
T KOG0192|consen  272 PPHLSS  277 (362)
T ss_pred             CHHHHH
Confidence            444433

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.93  E-value=6.1e-26  Score=189.81  Aligned_cols=151  Identities=26%  Similarity=0.438  Sum_probs=121.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++++.||+|+||.||+|++..+++.||+|++.+.. ......+.+.+|+.+++.++|+||+++++.+...+.+++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            47999999999999999999999999999999986533 22344677889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~---------------  145 (218)
                      ||+++ +|.+++......                           +++|.           +.++               
T Consensus        81 E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~  160 (376)
T cd05598          81 DYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY  160 (376)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcccccccccccc
Confidence            99986 888887654321                           22221           1222               


Q ss_pred             ---------------------------------------------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHh
Q 041487          146 ---------------------------------------------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS  179 (218)
Q Consensus       146 ---------------------------------------------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t  179 (218)
                                                                   |+ .|+|||.+ .+..++.++|||||||++|+|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvilyell~  239 (376)
T cd05598         161 QKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVL-LRTGYTQLCDWWSVGVILYEMLV  239 (376)
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHH-cCCCCCcceeeeeccceeeehhh
Confidence                                                         22 49999954 45558999999999999999999


Q ss_pred             CCCCCCCCCcchH
Q 041487          180 GKPLFPCGKKDHL  192 (218)
Q Consensus       180 g~~Pf~~~~~~~~  192 (218)
                      |+.||...+....
T Consensus       240 G~~Pf~~~~~~~~  252 (376)
T cd05598         240 GQPPFLADTPAET  252 (376)
T ss_pred             CCCCCCCCCHHHH
Confidence            9999988754433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=1.4e-26  Score=187.20  Aligned_cols=160  Identities=23%  Similarity=0.405  Sum_probs=132.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ...+|.+.+.||+|.||.|-+|.....|+.||||.+++.... ..+.-++.+|+++|..++||||+.+|++|.+.+.++|
T Consensus        51 lkHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvi  130 (668)
T KOG0611|consen   51 LKHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVI  130 (668)
T ss_pred             hhhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEE
Confidence            456799999999999999999999899999999999876643 4557789999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC--------------------------------------Cccccccc--------------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT--------------------------------------SIRPHIKE--------------  144 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~--------------------------------------~~~~~~~~--------------  144 (218)
                      ||||..+ .|+||+...+..                                      ....++.+              
T Consensus       131 vMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLq  210 (668)
T KOG0611|consen  131 VMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQ  210 (668)
T ss_pred             EEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhccccHHH
Confidence            9999987 999999876553                                      11112233              


Q ss_pred             --cCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          145 --VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       145 --~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                        +|++ |.+||.+.+..+-++.+|-||||++||-++-|..||++.+...+.+.+..
T Consensus       211 TFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~  267 (668)
T KOG0611|consen  211 TFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISR  267 (668)
T ss_pred             HhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhc
Confidence              3444 77788444444456789999999999999999999999988887776664

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.2e-25  Score=187.28  Aligned_cols=150  Identities=27%  Similarity=0.462  Sum_probs=120.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++++.||+|+||.||+|++..+++.||+|++++.. ........+.+|+.+++.++||||+++++.+.....+++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            47999999999999999999999999999999997543 23345567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV---------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~---------------  145 (218)
                      ||+.+ +|.+++......                           +++|.+           .++               
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  160 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFY  160 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccccccccc
Confidence            99976 888887654321                           222211           111               


Q ss_pred             ----------------------------------------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCC
Q 041487          146 ----------------------------------------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF  184 (218)
Q Consensus       146 ----------------------------------------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf  184 (218)
                                                              |+ .|+|||.+ ....++.++|||||||++|+|++|+.||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlG~il~el~~G~~Pf  239 (364)
T cd05599         161 RILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVF-LQTGYNKECDWWSLGVIMYEMLVGYPPF  239 (364)
T ss_pred             ccccccccccccccccccccccccccchhhcccccccccccCccccCHHHH-cCCCCCCeeeeecchhHHHHhhcCCCCC
Confidence                                                    22 49999955 4555899999999999999999999999


Q ss_pred             CCCCcch
Q 041487          185 PCGKKDH  191 (218)
Q Consensus       185 ~~~~~~~  191 (218)
                      ...+...
T Consensus       240 ~~~~~~~  246 (364)
T cd05599         240 CSDNPQE  246 (364)
T ss_pred             CCCCHHH
Confidence            8765433

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4e-26  Score=181.72  Aligned_cols=165  Identities=38%  Similarity=0.630  Sum_probs=137.2

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-----CCE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-----GRY  114 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~  114 (218)
                      ...|..++.||+|+||.|+.|.++.+|..||||.+..........++..+|+.+++.++|+||+.+.+++..     -..
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~D  100 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFND  100 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccce
Confidence            445666899999999999999999999999999887555566678899999999999999999999999875     346


Q ss_pred             EEEEEecCCCChHHHhhhccc-C--------------------------Ccccc-----------ccccCC---------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTI-T--------------------------SIRPH-----------IKEVGS---------  147 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~-~--------------------------~~~~~-----------~~~~g~---------  147 (218)
                      +|+|+|+|+.+|.+.++.... .                          +.+|.           +-+||.         
T Consensus       101 vYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~  180 (359)
T KOG0660|consen  101 VYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFE  180 (359)
T ss_pred             eEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccccCc
Confidence            999999999888888877652 2                          22332           223332         


Q ss_pred             -----------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCc
Q 041487          148 -----------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTN  204 (218)
Q Consensus       148 -----------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~  204 (218)
                                 .|.|||.+.....|+...||||+||++.||++|++.|+|. ..+++..+...+|.|++
T Consensus       181 ~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~  249 (359)
T KOG0660|consen  181 DGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSE  249 (359)
T ss_pred             ccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCH
Confidence                       2999998888888999999999999999999999999998 67788888888777754

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.93  E-value=2.2e-25  Score=186.87  Aligned_cols=149  Identities=26%  Similarity=0.441  Sum_probs=119.6

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|.+++.||+|+||.||+|.+..+++.+|+|.+.+.. ......+.+.+|+.+++.++|+||+++++.+.+...+|+|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            5899999999999999999999999999999987543 233446788899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc----------------
Q 041487          121 YLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~----------------  145 (218)
                      |+++ +|.+++......                           +++|.           +.++                
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~  161 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQ  161 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccc
Confidence            9987 888877553221                           11211           1222                


Q ss_pred             ------------------------------------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHH
Q 041487          146 ------------------------------------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAE  176 (218)
Q Consensus       146 ------------------------------------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~  176 (218)
                                                                      | ..|+|||.+ .+..++.++|||||||++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~-~~~~~~~~~DiwSlGvil~e  240 (382)
T cd05625         162 SGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVL-LRTGYTQLCDWWSVGVILYE  240 (382)
T ss_pred             cccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHh-cCCCCCCeeeEEechHHHHH
Confidence                                                            2 239999955 45558999999999999999


Q ss_pred             HHhCCCCCCCCCcch
Q 041487          177 MVSGKPLFPCGKKDH  191 (218)
Q Consensus       177 l~tg~~Pf~~~~~~~  191 (218)
                      |++|+.||...+...
T Consensus       241 lltG~~Pf~~~~~~~  255 (382)
T cd05625         241 MLVGQPPFLAQTPLE  255 (382)
T ss_pred             HHhCCCCCCCCCHHH
Confidence            999999998775443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.93  E-value=2e-25  Score=177.69  Aligned_cols=165  Identities=45%  Similarity=0.762  Sum_probs=140.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC-eeeeeeeEEeCC-----
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN-IVRLLDVLTTGR-----  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~-----  113 (218)
                      ...|..++.||+|.||.||+|+.+.+|+.||+|.++.....+.......+|+.+++.++|+| |+++++++....     
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            45677788899999999999999999999999999866554567788899999999999999 999999998766     


Q ss_pred             -EEEEEEecCCCChHHHhhhccc---C----------------------------Cccccc-----------cccCCc--
Q 041487          114 -YVYLVFEYLDLDLGSFIRKHTI---T----------------------------SIRPHI-----------KEVGSP--  148 (218)
Q Consensus       114 -~~~lv~E~~~~~L~~~~~~~~~---~----------------------------~~~~~~-----------~~~g~~--  148 (218)
                       .+++|+||++.+|.+|+.....   .                            |.+|++           ++||.+  
T Consensus        90 ~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra  169 (323)
T KOG0594|consen   90 GKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARA  169 (323)
T ss_pred             ceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHH
Confidence             8999999999999999877552   1                            444443           444433  


Q ss_pred             ----------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCc
Q 041487          149 ----------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTN  204 (218)
Q Consensus       149 ----------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~  204 (218)
                                      |.|||++.+...|+..+||||+||+++||+++++.|++. +.+.+..+.+.++.|..
T Consensus       170 ~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e  242 (323)
T KOG0594|consen  170 FSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNE  242 (323)
T ss_pred             hcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCc
Confidence                            999999999888999999999999999999999999998 78888888888777644

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.93  E-value=1.5e-24  Score=176.68  Aligned_cols=158  Identities=43%  Similarity=0.706  Sum_probs=123.8

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|.+.+.||+|+||.||+|.++.++..+|+|.++.... ......+.+|+.++++++||||+++++++...+..+++
T Consensus         4 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   82 (309)
T cd07872           4 KMETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLV   82 (309)
T ss_pred             CCCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeecccc-CCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEE
Confidence            34779999999999999999999988999999999875432 23345677899999999999999999999999999999


Q ss_pred             EecCCCChHHHhhhcccC----------------------------Ccccc-----------cccc--------------
Q 041487          119 FEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~--------------  145 (218)
                      |||++++|.+++......                            +++|.           +.++              
T Consensus        83 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  162 (309)
T cd07872          83 FEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYS  162 (309)
T ss_pred             EeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCccccc
Confidence            999998888877543221                            22221           1222              


Q ss_pred             ----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHH
Q 041487          146 ----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR  197 (218)
Q Consensus       146 ----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~  197 (218)
                          +..|+|||.+.....++.++|||||||++|+|+||+.||...+. +.+..+.+
T Consensus       163 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~  219 (309)
T cd07872         163 NEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFR  219 (309)
T ss_pred             cccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence                22399999776666689999999999999999999999987743 33333333

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=2.1e-25  Score=199.83  Aligned_cols=176  Identities=26%  Similarity=0.383  Sum_probs=141.1

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCC-----cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETG-----KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~-----~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      .+.+....-+....||+|.||.||.|...+..     ..||+|.+++. .+......|.+|+.+|+.++|||||++++++
T Consensus       686 lp~v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~-~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~  764 (1025)
T KOG1095|consen  686 LPEVPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL-SSEQEVSDFLKEALLMSKFDHPNIVSLIGVC  764 (1025)
T ss_pred             cccCChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEecccc-CCHHHHHHHHHHHHHHhcCCCcceeeEEEee
Confidence            34455777889999999999999999986543     34899988743 3445678899999999999999999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------------------------Ccccccc
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------------------------SIRPHIK  143 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------------------~~~~~~~  143 (218)
                      .+....+|++|||.+ +|..|++.....                                             +...++.
T Consensus       765 l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIa  844 (1025)
T KOG1095|consen  765 LDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIA  844 (1025)
T ss_pred             cCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEc
Confidence            999999999999998 999999886332                                             2233445


Q ss_pred             ccCCc--------------------ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhccc
Q 041487          144 EVGSP--------------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTAL  202 (218)
Q Consensus       144 ~~g~~--------------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~  202 (218)
                      +||.+                    |||||.+.. +.++.++|||||||++||++| |..||...+...+...+...+..
T Consensus       845 DFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d-~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL  923 (1025)
T KOG1095|consen  845 DFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKD-GIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRL  923 (1025)
T ss_pred             ccchhHhhhhchheeccCccccceecCCHHHHhh-cccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCcc
Confidence            56554                    999997766 449999999999999999999 99999998666666656666677


Q ss_pred             Ccccchhhhh
Q 041487          203 TNYLVLPCFL  212 (218)
Q Consensus       203 ~~~~~~~~~~  212 (218)
                      +++...|+-+
T Consensus       924 ~~P~~CP~~l  933 (1025)
T KOG1095|consen  924 DPPSYCPEKL  933 (1025)
T ss_pred             CCCCCCChHH
Confidence            6666666544

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.93  E-value=3.8e-25  Score=184.88  Aligned_cols=160  Identities=24%  Similarity=0.406  Sum_probs=124.9

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..+..++|++.+.||+|+||.||+|.++.+++.+|+|++.+.. ......+.+.+|+.+++.++||||+++++.+..+..
T Consensus        38 ~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~  117 (371)
T cd05622          38 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY  117 (371)
T ss_pred             cCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence            4456689999999999999999999999999999999987533 233445678889999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC--------------------------Cccccc-----------ccc-----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEV-----------  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~-----------  145 (218)
                      +++||||+++ +|.+++......                          +++|.+           .++           
T Consensus       118 ~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~  197 (371)
T cd05622         118 LYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGM  197 (371)
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCc
Confidence            9999999986 888887654321                          222211           111           


Q ss_pred             -------C-CcccCcccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 041487          146 -------G-SPYKAPESRIRS---SVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       146 -------g-~~y~aPE~~~~~---~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~  195 (218)
                             | ..|+|||.+...   ..++.++|||||||++|+|++|+.||...+.......
T Consensus       198 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~  258 (371)
T cd05622         198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK  258 (371)
T ss_pred             ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                   2 239999976543   2378899999999999999999999988755444333

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.93  E-value=2.6e-25  Score=185.00  Aligned_cols=155  Identities=26%  Similarity=0.429  Sum_probs=123.6

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++++.||+|+||.||+|.++.++..||+|+++... ........+.+|+.++..++|++++++++.+.....+|+||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46999999999999999999999999999999997543 33455678889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~---------------  145 (218)
                      ||+++ +|.+++......                           +++|.           +.++               
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~  160 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFY  160 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccc
Confidence            99987 888887654321                           11111           1111               


Q ss_pred             -------------------------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -------------------------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -------------------------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                                           | ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~-~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~  239 (360)
T cd05627         161 RNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVF-MQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (360)
T ss_pred             cccccCCcccccccccccccccccccccccccccccCCCccccCHHHH-cCCCCCCcceeccccceeeecccCCCCCCCC
Confidence                                                 2 239999954 4556899999999999999999999999887


Q ss_pred             CcchHHHHH
Q 041487          188 KKDHLSLIV  196 (218)
Q Consensus       188 ~~~~~~~~~  196 (218)
                      +.......+
T Consensus       240 ~~~~~~~~i  248 (360)
T cd05627         240 TPQETYRKV  248 (360)
T ss_pred             CHHHHHHHH
Confidence            655544433

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.93  E-value=5.5e-25  Score=183.82  Aligned_cols=156  Identities=23%  Similarity=0.441  Sum_probs=123.0

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++.+.||+|+||.||+|.+..++..+|+|.+++.. ......+.+.+|+.+++.++||||+++++++.....+
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~  118 (370)
T cd05596          39 RMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYL  118 (370)
T ss_pred             CCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            356688999999999999999999999999999999997543 2334456688899999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC--------------------------Ccccc-----------cccc------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEV------------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~------------  145 (218)
                      ++||||+++ +|.+++......                          +++|.           +.++            
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~  198 (370)
T cd05596         119 YMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV  198 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcc
Confidence            999999976 888877553221                          12221           1111            


Q ss_pred             ------C-CcccCcccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          146 ------G-SPYKAPESRIRS---SVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       146 ------g-~~y~aPE~~~~~---~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                            | ..|+|||.+...   ..++.++|||||||++|+|++|+.||...+....
T Consensus       199 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~  255 (370)
T cd05596         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT  255 (370)
T ss_pred             cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHH
Confidence                  2 239999966542   3478899999999999999999999988754433

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=8.9e-25  Score=178.18  Aligned_cols=155  Identities=23%  Similarity=0.335  Sum_probs=126.6

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ....-....+|++..+||.|..++||+|.....+..||||++..+....+ .+.+.+|+..++.++||||++++..|..+
T Consensus        18 ~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~-ld~l~kE~~~msl~~HPNIv~~~~sFvv~   96 (516)
T KOG0582|consen   18 EKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNND-LDALRKEVQTMSLIDHPNIVTYHCSFVVD   96 (516)
T ss_pred             cccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhh-HHHHHHHHHHhhhcCCCCcceEEEEEEec
Confidence            33444678899999999999999999999999999999999986554443 78999999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cc-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KE-------  144 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~-------  144 (218)
                      ..+|+||+||.+ ++.+.++.....                             ++++.+           .+       
T Consensus        97 ~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l  176 (516)
T KOG0582|consen   97 SELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASL  176 (516)
T ss_pred             ceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeee
Confidence            999999999986 777777654332                             222221           11       


Q ss_pred             --------------cC-CcccCcccccC-CCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          145 --------------VG-SPYKAPESRIR-SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       145 --------------~g-~~y~aPE~~~~-~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                    .| ..|||||++.+ ..-|+.++||||||++..|+++|..||....
T Consensus       177 ~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~p  236 (516)
T KOG0582|consen  177 FDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYP  236 (516)
T ss_pred             cccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCC
Confidence                          22 34999998555 3449999999999999999999999998763

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.93  E-value=2.3e-24  Score=173.76  Aligned_cols=146  Identities=26%  Similarity=0.431  Sum_probs=115.9

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|+..+.||+|+||.||+|.+..++..||+|.+.+.... ......+.+|+.+++.++|++++++++.+..++..+++||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            488999999999999999999999999999998754322 2334567889999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC-----------------------------Ccccc-----------ccccC-------------
Q 041487          121 YLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEVG-------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~g-------------  146 (218)
                      |+++ +|.+++......                             +++|.           +.++|             
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  160 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRG  160 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecC
Confidence            9987 887766432110                             22221           12222             


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+
T Consensus       161 ~~g~~~y~aPE~~-~~~~~~~~~DvwslGvil~el~~g~~pf~~~~  205 (285)
T cd05631         161 RVGTVGYMAPEVI-NNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRK  205 (285)
T ss_pred             CCCCCCccCHhhh-cCCCCCcccCchhHHHHHHHHHhCCCCCCCCC
Confidence                249999955 45568999999999999999999999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.93  E-value=1.8e-24  Score=178.01  Aligned_cols=147  Identities=36%  Similarity=0.647  Sum_probs=115.2

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----CEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----RYVY  116 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~  116 (218)
                      +|++.+.||+|+||.||+|.++.++..||+|.+............+.+|+.+++.++||||+++++++...     ..+|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            58999999999999999999999999999999875433344456788999999999999999999987532     3589


Q ss_pred             EEEecCCCChHHHhhhcccC---------------------------Ccccc-----------cccc-------------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT---------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-------------  145 (218)
                      ++|||++++|.+++......                           +++|.           +.++             
T Consensus        81 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  160 (338)
T cd07859          81 VVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTA  160 (338)
T ss_pred             EEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccCcc
Confidence            99999998988887653221                           22221           1122             


Q ss_pred             -------C-CcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -------G-SPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -------g-~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             | ..|+|||.+... ..++.++|||||||++|+|++|+.||.+.+
T Consensus       161 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~  212 (338)
T cd07859         161 IFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKN  212 (338)
T ss_pred             ccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence                   1 238999965442 558899999999999999999999998764

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.1e-25  Score=170.53  Aligned_cols=169  Identities=22%  Similarity=0.369  Sum_probs=136.4

Q ss_pred             CCChhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeee
Q 041487           29 TNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLD  107 (218)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~  107 (218)
                      .+.+.....+..++|.+.+.||+|.||.||+|+.+.++-.||+|++-+.+ ........+.+|+++...++||||+++|+
T Consensus        10 ~~~~~~~~~~~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~   89 (281)
T KOG0580|consen   10 PFGSRATKTWTLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYG   89 (281)
T ss_pred             CcccccccccchhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhh
Confidence            34445567788899999999999999999999999999999999997765 34456678899999999999999999999


Q ss_pred             eEEeCCEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC
Q 041487          108 VLTTGRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG  146 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g  146 (218)
                      +|.+...+|+++||... .+.+.+......                             +++|.+           +++|
T Consensus        90 ~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfG  169 (281)
T KOG0580|consen   90 YFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFG  169 (281)
T ss_pred             heeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCC
Confidence            99999999999999975 777776632221                             344432           2222


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                                      ..|.+|| ..++..++..+|+|++|++.||++.|.+||.....+...+.++.
T Consensus       170 wsV~~p~~kR~tlcgt~dyl~pE-mv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k  236 (281)
T KOG0580|consen  170 WSVHAPSNKRKTLCGTLDYLPPE-MVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRK  236 (281)
T ss_pred             ceeecCCCCceeeecccccCCHh-hcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHH
Confidence                            2399999 66777799999999999999999999999998855555554444

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.93  E-value=1.8e-24  Score=178.06  Aligned_cols=155  Identities=21%  Similarity=0.401  Sum_probs=123.5

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++++.||+|+||.||++++..++..+|+|.+.... .....+.+.+|+.+++.++||||+++++++...+.+++
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc-CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            45688999999999999999999999999999999987532 22345679999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-----------  146 (218)
                      +|||+++ +|.+++......                            ++++.           +.++|           
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  160 (331)
T cd06649          81 CMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN  160 (331)
T ss_pred             EeecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccccc
Confidence            9999987 888887543211                            22221           12222           


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                           ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+..
T Consensus       161 ~~~g~~~y~aPE~~-~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~  212 (331)
T cd06649         161 SFVGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEA  212 (331)
T ss_pred             cCCCCcCcCCHhHh-cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                 249999954 45568999999999999999999999998765544433

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=2.2e-25  Score=180.20  Aligned_cols=102  Identities=22%  Similarity=0.268  Sum_probs=87.9

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +...+..++|++++.||.|.-|+||+|+.+.+++.+|+|++.+... ......+...|.+||+.++||.++++|..|+.+
T Consensus        70 ~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~  149 (459)
T KOG0610|consen   70 KDGSLGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETD  149 (459)
T ss_pred             CCCccCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeecc
Confidence            3455677889999999999999999999999999999999987763 356678899999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI  135 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~  135 (218)
                      ...|++||||+| +|.-..+++..
T Consensus       150 ~~~cl~meyCpGGdL~~LrqkQp~  173 (459)
T KOG0610|consen  150 KYSCLVMEYCPGGDLHSLRQKQPG  173 (459)
T ss_pred             ceeEEEEecCCCccHHHHHhhCCC
Confidence            999999999976 66555555433

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.92  E-value=3.9e-24  Score=173.58  Aligned_cols=150  Identities=40%  Similarity=0.687  Sum_probs=120.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|.+.+.||+|+||.||+|.++.++..||+|.++... .......+.+|+.+++.++||||+++++++......+++
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv   82 (301)
T cd07873           4 KLETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEH-EEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             cccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEeccc-ccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEE
Confidence            3578999999999999999999998899999999987443 223345677899999999999999999999999999999


Q ss_pred             EecCCCChHHHhhhcccC----------------------------Ccccc-----------cccc--------------
Q 041487          119 FEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~--------------  145 (218)
                      |||++++|.+++......                            ++++.           +.++              
T Consensus        83 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~  162 (301)
T cd07873          83 FEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYS  162 (301)
T ss_pred             EeccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCccc
Confidence            999998888877653211                            11111           1122              


Q ss_pred             ----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 ----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 ----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                          +..|+|||.+.....++.++|||||||++|+|++|++||...+.
T Consensus       163 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~  210 (301)
T cd07873         163 NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTV  210 (301)
T ss_pred             ccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                22389999766666688899999999999999999999987644

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.92  E-value=5e-25  Score=180.79  Aligned_cols=170  Identities=21%  Similarity=0.317  Sum_probs=125.9

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      +.||+|+||.||+|.++.+++.||+|++++... .......+.+|+.++++++||||+++++.+...+.+|+||||+++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            469999999999999999999999999975432 334456788899999999999999999999999999999999987 


Q ss_pred             ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------Cc
Q 041487          125 DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------SP  148 (218)
Q Consensus       125 ~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~~  148 (218)
                      +|.+++......                           +++|.           +.++|                  ..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~  160 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPE  160 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCcc
Confidence            887777553321                           22221           12222                  23


Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc---Ccccchhhhhhhccc
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL---TNYLVLPCFLSIMLL  217 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~  217 (218)
                      |+|||. ..+..++.++|||||||++|+|++|+.||...+...+...+......   ..+..+.+++..||.
T Consensus       161 y~aPE~-~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~  231 (323)
T cd05571         161 YLAPEV-LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLK  231 (323)
T ss_pred             ccChhh-hcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcc
Confidence            999995 45556899999999999999999999999877665555544322111   123344555665553

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-26  Score=188.50  Aligned_cols=148  Identities=29%  Similarity=0.490  Sum_probs=122.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ...|+.++.||+|+||.||+|.+..+++.||+|++.... .....+.+.+|+.++..++++||.++|+.+..+..+|++|
T Consensus        12 ~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~-~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiM   90 (467)
T KOG0201|consen   12 ELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEE-AEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIM   90 (467)
T ss_pred             ccccccchhccccccceeeeeeeccccceEEEEEechhh-cchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHH
Confidence            345777899999999999999999999999999998543 3345678899999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc----------------------------cc
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH----------------------------IK  143 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~----------------------------~~  143 (218)
                      |||.+ ++.+.+......                           ++++.                            ..
T Consensus        91 ey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~t  170 (467)
T KOG0201|consen   91 EYCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKT  170 (467)
T ss_pred             HHhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhcccc
Confidence            99987 777777665441                           22221                            13


Q ss_pred             ccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          144 EVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       144 ~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                      .+|++ |||||++. ...|+.++||||||++++||++|.+||....+
T Consensus       171 fvGTPfwMAPEVI~-~~~Y~~KADIWSLGITaiEla~GePP~s~~hP  216 (467)
T KOG0201|consen  171 FVGTPFWMAPEVIK-QSGYDTKADIWSLGITAIELAKGEPPHSKLHP  216 (467)
T ss_pred             ccccccccchhhhc-cccccchhhhhhhhHHHHHHhcCCCCCcccCc
Confidence            34555 89999655 55699999999999999999999999987644

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.92  E-value=1.6e-25  Score=185.05  Aligned_cols=158  Identities=28%  Similarity=0.491  Sum_probs=132.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE-EEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY-VYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-~~lv  118 (218)
                      .++|..++++|+|+||.+++++++..+..+++|.+..........+...+|+.+++++.|||||.+.+.|..++. ++|+
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence            478999999999999999999999999999999998777777777789999999999999999999999998887 9999


Q ss_pred             EecCCC-ChHHHhhhcccC-----------------------------Cccc-----------cc---------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT-----------------------------SIRP-----------HI---------------  142 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~-----------------------------~~~~-----------~~---------------  142 (218)
                      |+||++ ++++.+.++...                             +++.           ..               
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~  162 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSL  162 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCchhh
Confidence            999998 999998876521                             1111           11               


Q ss_pred             --cccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          143 --KEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       143 --~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                        ...|++ |+.|| +..+.+|+.++|||||||++|||++-+++|...+...+...+..
T Consensus       163 a~tvvGTp~YmcPE-il~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~  220 (426)
T KOG0589|consen  163 ASTVVGTPYYMCPE-ILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINR  220 (426)
T ss_pred             hheecCCCcccCHH-HhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhh
Confidence              123444 77788 77788899999999999999999999999998866655554444

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.92  E-value=9.4e-25  Score=182.41  Aligned_cols=154  Identities=24%  Similarity=0.429  Sum_probs=122.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|++.+.||+|+||.||++.++.+++.+|+|++.+.. ......+.+.+|+.+++.++||||+++++.+..+..+|
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~  119 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY  119 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE
Confidence            45678999999999999999999999999999999987532 23344567889999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC--------------------------Cccccc-----------ccc-------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEV-------------  145 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~-------------  145 (218)
                      +||||+++ +|.+++......                          +++|.+           .++             
T Consensus       120 lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~  199 (370)
T cd05621         120 MVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVR  199 (370)
T ss_pred             EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCcee
Confidence            99999986 888887654321                          222211           111             


Q ss_pred             -----C-CcccCcccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          146 -----G-SPYKAPESRIRS---SVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       146 -----g-~~y~aPE~~~~~---~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                           | ..|+|||.+...   ..++.++||||+||++|+|++|+.||...+...
T Consensus       200 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~  254 (370)
T cd05621         200 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVG  254 (370)
T ss_pred             cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHH
Confidence                 2 239999976543   237889999999999999999999998775433

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.92  E-value=1.4e-24  Score=173.22  Aligned_cols=158  Identities=27%  Similarity=0.396  Sum_probs=120.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      +...+|++.+.||+|+||.||+|..+   ..+..+|+|.++... .......+.+|+.+++.++||||+++++++..++.
T Consensus         2 i~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   80 (266)
T cd05064           2 LDNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGC-SDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNT   80 (266)
T ss_pred             CchHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCC-CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCC
Confidence            45678999999999999999999765   356789999987432 22334678899999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      .++||||+++ +|.+++......                            +++|.+           .++|        
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~  160 (266)
T cd05064          81 MMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSE  160 (266)
T ss_pred             cEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCccccccccc
Confidence            9999999987 888887653211                            222211           1111        


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                 ..|+|||.+ .+..++.++|||||||++|++++ |+.||.......+...+.
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~  222 (266)
T cd05064         161 AIYTTMSGKSPVLWAAPEAI-QYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVE  222 (266)
T ss_pred             chhcccCCCCceeecCHHHH-hhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHH
Confidence                       248999954 45668999999999999999876 999998775544444433

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.92  E-value=2.7e-24  Score=176.45  Aligned_cols=153  Identities=24%  Similarity=0.415  Sum_probs=116.1

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHH---hhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLL---KELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l---~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      |++++.||+|+||.||+|.++.+++.||+|.+++.. ......+.+.+|+.++   +.++||||+++++++...+.+|+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            688999999999999999999999999999997543 2233456677776654   566899999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC--------------------------Ccccc-----------ccccC--------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g--------------  146 (218)
                      |||+++ +|..++......                          ++++.           +.++|              
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~  160 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTST  160 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccc
Confidence            999987 777666442211                          12211           12222              


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                          ..|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+.......+
T Consensus       161 ~~g~~~y~aPE~~-~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i  213 (324)
T cd05589         161 FCGTPEFLAPEVL-TETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSI  213 (324)
T ss_pred             cccCccccCHhHh-cCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                239999954 4556899999999999999999999999887554444433

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.92  E-value=1.9e-24  Score=177.41  Aligned_cols=149  Identities=21%  Similarity=0.361  Sum_probs=116.2

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      +.||+|+||.||++.++.++..||+|.++.... .......+.+|+.+++.++||||+++++.+.....+|+||||+++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            469999999999999999999999999975432 234456778899999999999999999999999999999999987 


Q ss_pred             ChHHHhhhcccC---------------------------Cccccc-----------ccc-----------------C-Cc
Q 041487          125 DLGSFIRKHTIT---------------------------SIRPHI-----------KEV-----------------G-SP  148 (218)
Q Consensus       125 ~L~~~~~~~~~~---------------------------~~~~~~-----------~~~-----------------g-~~  148 (218)
                      +|.+++......                           +++|.+           .++                 | ..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~  160 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPE  160 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcC
Confidence            887776543221                           222211           111                 2 24


Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      |+|||.+ .+..++.++|||||||++|+|++|+.||...+.......+
T Consensus       161 y~aPE~~-~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~  207 (323)
T cd05595         161 YLAPEVL-EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI  207 (323)
T ss_pred             cCCcccc-cCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9999955 4556899999999999999999999999877655544443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.92  E-value=3.8e-24  Score=182.51  Aligned_cols=157  Identities=31%  Similarity=0.596  Sum_probs=118.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-------  111 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------  111 (218)
                      ...+|++.+.||+|+||.||+|.+..+++.||+|.+...      .....+|+.+++.++||||+++++++..       
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~------~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~  137 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD------PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNE  137 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC------cchHHHHHHHHHhcCCCCCcceeeeEeecccccCC
Confidence            346799999999999999999999999999999987532      1234579999999999999999888643       


Q ss_pred             -CCEEEEEEecCCCChHHHhhhccc----C---------------------------Cccc------------cccccC-
Q 041487          112 -GRYVYLVFEYLDLDLGSFIRKHTI----T---------------------------SIRP------------HIKEVG-  146 (218)
Q Consensus       112 -~~~~~lv~E~~~~~L~~~~~~~~~----~---------------------------~~~~------------~~~~~g-  146 (218)
                       ...+++||||+++++.+++.....    .                           +++|            ++.++| 
T Consensus       138 ~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGl  217 (440)
T PTZ00036        138 KNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGS  217 (440)
T ss_pred             CceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeecccc
Confidence             235789999999988776643110    0                           2222            222333 


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcc
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTA  201 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~  201 (218)
                                      ..|+|||.+.....++.++|||||||++|+|++|++||.+. ..+.+..+++.++.
T Consensus       218 a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~  289 (440)
T PTZ00036        218 AKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGT  289 (440)
T ss_pred             chhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence                            22899997666666899999999999999999999999876 44555666555443

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.1e-24  Score=177.77  Aligned_cols=149  Identities=24%  Similarity=0.381  Sum_probs=118.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||++.++.+++.||+|++.+.. ......+.+.+|..++..++|++|+++++.+...+.+|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            47999999999999999999999999999999997532 23344567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-----------cccc--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~--------------  145 (218)
                      ||+++ +|.+++......                            ++++.           +.++              
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  160 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQS  160 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccc
Confidence            99976 998888653211                            11111           1111              


Q ss_pred             ----C-CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 ----G-SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 ----g-~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                          | ..|+|||.+..    ...++.++|||||||++|+|++|+.||...+.
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~  213 (331)
T cd05597         161 NVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL  213 (331)
T ss_pred             cceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCH
Confidence                2 24999997653    24478899999999999999999999987643

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=6.1e-26  Score=179.07  Aligned_cols=163  Identities=25%  Similarity=0.401  Sum_probs=130.6

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ...+..++|..+++||+|.||+|-+++.+.+++.+|+|++++.. ...+...+-..|-++|+..+||.+..+...|+.++
T Consensus       162 ~~kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~d  241 (516)
T KOG0690|consen  162 KNKVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQD  241 (516)
T ss_pred             cceeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCc
Confidence            34457788999999999999999999999999999999999876 33455678888999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHh-------------------------hhcccC--Ccc-----------ccc------------
Q 041487          114 YVYLVFEYLDL-DLGSFI-------------------------RKHTIT--SIR-----------PHI------------  142 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~-------------------------~~~~~~--~~~-----------~~~------------  142 (218)
                      .+|+||||++| .|.-.+                         ..+...  +.+           -++            
T Consensus       242 rlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~  321 (516)
T KOG0690|consen  242 RLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKY  321 (516)
T ss_pred             eEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcccc
Confidence            99999999964 222111                         111100  111           111            


Q ss_pred             -----cccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          143 -----KEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       143 -----~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                           ..+|++ |+||| +.++..|+.++|.|.+||++|||++|++||...+++.+..++..
T Consensus       322 g~t~kTFCGTPEYLAPE-VleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~  382 (516)
T KOG0690|consen  322 GDTTKTFCGTPEYLAPE-VLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILM  382 (516)
T ss_pred             cceeccccCChhhcCch-hhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHh
Confidence                 334555 99999 56677799999999999999999999999999999999888764

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.92  E-value=5.3e-24  Score=174.75  Aligned_cols=153  Identities=24%  Similarity=0.366  Sum_probs=118.9

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCC-CCeeeeeeeEEeCCEEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEH-DNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~  119 (218)
                      +|++++.||+|+||.||+|.+..+++.||+|++++... .....+.+..|..++..++| ++|+++++++...+.+|+||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            58999999999999999999999999999999975432 33456678889999999976 46889999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+++ +|.+++......                           +++|.           +.++|              
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~  160 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRT  160 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceee
Confidence            99986 888777543221                           22221           12222              


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~  195 (218)
                          ..|+|||.+ .+..++.++||||+||++|+|+||+.||.+.+...+...
T Consensus       161 ~~gt~~y~aPE~~-~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~  212 (324)
T cd05587         161 FCGTPDYIAPEII-AYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQS  212 (324)
T ss_pred             ecCCccccChhhh-cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                239999954 455689999999999999999999999987754444433

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.92  E-value=5.5e-24  Score=174.59  Aligned_cols=155  Identities=23%  Similarity=0.348  Sum_probs=119.5

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      +|++.+.||+|+||.||+|.++.++..||+|.+++... .....+.+..|..++..+ .|++++++++++...+.+++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            58899999999999999999999999999999986432 233445667788888777 5899999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~---------------  145 (218)
                      ||+++ +|.+++......                           +++|.           +.++               
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~  160 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKT  160 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCcccc
Confidence            99986 888777543221                           22221           1222               


Q ss_pred             --CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          146 --GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 --g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                        |+ .|+|||.+ .+..++.++|||||||++|+|+||+.||...+...+...+.
T Consensus       161 ~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~  214 (323)
T cd05616         161 FCGTPDYIAPEII-AYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM  214 (323)
T ss_pred             CCCChhhcCHHHh-cCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence              22 39999954 55668999999999999999999999999876555544443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.92  E-value=1.9e-24  Score=180.59  Aligned_cols=147  Identities=31%  Similarity=0.515  Sum_probs=117.1

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-----EEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-----YVY  116 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~  116 (218)
                      +|++++.||+|+||.||++.+..++..||+|.+..........+++.+|+.+++.++|+||+++++++....     ..|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            478899999999999999999889999999998654333334567889999999999999999999998766     799


Q ss_pred             EEEecCCCChHHHhhhcccC---------------------------Ccccc-----------ccccC------------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------  146 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------  146 (218)
                      +||||+.++|.+++......                           +++|.           +.++|            
T Consensus        81 lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~  160 (372)
T cd07853          81 VVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKH  160 (372)
T ss_pred             EEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCcccc
Confidence            99999988887776543221                           22221           11222            


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             ..|+|||.+.....++.++||||+||++|+|++|+.||.+.+
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  209 (372)
T cd07853         161 MTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQS  209 (372)
T ss_pred             CCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCC
Confidence                   238999976665668999999999999999999999998764

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.92  E-value=6.6e-24  Score=176.52  Aligned_cols=149  Identities=31%  Similarity=0.498  Sum_probs=117.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++.+.||+|+||.||++.+..++..+|+|.+............+.+|+.+++.++||||+++++++...      
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            45889999999999999999999999999999999976544445567788999999999999999999998644      


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC-------------------------Ccccc-----------ccccC----------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT-------------------------SIRPH-----------IKEVG----------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~-------------------------~~~~~-----------~~~~g----------  146 (218)
                      ...|++|||+++++.+++......                         +++|.           +.++|          
T Consensus        99 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~  178 (359)
T cd07876          99 QDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFM  178 (359)
T ss_pred             ceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccCcc
Confidence            357999999998877655321110                         22222           22222          


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             ..|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+
T Consensus       179 ~~~~~~t~~y~aPE~~-~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~  226 (359)
T cd07876         179 MTPYVVTRYYRAPEVI-LGMGYKENVDIWSVGCIMGELVKGSVIFQGTD  226 (359)
T ss_pred             CCCCcccCCCCCchhc-cCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence                   239999955 45568999999999999999999999998763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=5.3e-25  Score=182.62  Aligned_cols=179  Identities=28%  Similarity=0.429  Sum_probs=145.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..+=|.+.+.||+|-|+.|-+|++--+|..||||++.+.-.+.....++.+|+.+|+-++|||||++|++...+..+|+|
T Consensus        16 IAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLi   95 (864)
T KOG4717|consen   16 IAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLI   95 (864)
T ss_pred             eeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEE
Confidence            35668999999999999999999888999999999998777776677899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Cccccc------------ccc------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPHI------------KEV------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~------------~~~------------  145 (218)
                      +|.-++ +|.|||.++...                            +.+|.+            .+|            
T Consensus        96 LELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL  175 (864)
T KOG4717|consen   96 LELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKL  175 (864)
T ss_pred             EEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcchh
Confidence            999998 999999887554                            334432            222            


Q ss_pred             ----C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCc--ccchhhhhhhccc
Q 041487          146 ----G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTN--YLVLPCFLSIMLL  217 (218)
Q Consensus       146 ----g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  217 (218)
                          | .+|-|||.+.++.+-.+++|||||||+||-+++|++||.-. +.+.+..+.......|-  +-..-+.+..||.
T Consensus       176 ~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPshvS~eCrdLI~sMLv  255 (864)
T KOG4717|consen  176 TTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLV  255 (864)
T ss_pred             hcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchhhhHHHHHHHHHHHh
Confidence                2 35999998888886678899999999999999999999876 67777777665444432  3344455555553

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.5e-24  Score=175.86  Aligned_cols=145  Identities=23%  Similarity=0.394  Sum_probs=114.5

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-Ch
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DL  126 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L  126 (218)
                      ||+|+||.||+|.+..++..||+|.++... ........+.+|+.+++.++||||+++++.+...+..++||||+++ +|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            699999999999999999999999987543 2334456788999999999999999999999999999999999987 88


Q ss_pred             HHHhhhcccC---------------------------Ccccc-----------cccc-----------------C-Cccc
Q 041487          127 GSFIRKHTIT---------------------------SIRPH-----------IKEV-----------------G-SPYK  150 (218)
Q Consensus       127 ~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------------g-~~y~  150 (218)
                      .+++......                           +++|.           +.++                 | ..|+
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~  160 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYL  160 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccC
Confidence            8887654321                           22221           1122                 2 2399


Q ss_pred             CcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          151 APESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       151 aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                      |||.+ .+..++.++|||||||++|+|++|+.||...+...+..
T Consensus       161 aPE~~-~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~  203 (312)
T cd05585         161 APELL-LGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYR  203 (312)
T ss_pred             CHHHH-cCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHH
Confidence            99954 45568999999999999999999999998765444433

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.7e-24  Score=179.18  Aligned_cols=150  Identities=29%  Similarity=0.491  Sum_probs=120.8

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++++... .......+.+|+.++..++|+||+++++.+.+.+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            469999999999999999999998999999999976542 3355678889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc----------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE----------------  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~----------------  144 (218)
                      ||+.+ +|.+++......                           +++|.+           .+                
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  160 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYY  160 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccc
Confidence            99976 888887664221                           111110           11                


Q ss_pred             ------------------------------cC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          145 ------------------------------VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       145 ------------------------------~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                                                    .| ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~  237 (350)
T cd05573         161 LNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVL-RGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQE  237 (350)
T ss_pred             ccccccccccccccccccccccccccccccccCccccCHHHH-cCCCCCCceeeEecchhhhhhccCCCCCCCCCHHH
Confidence                                          12 249999954 45568999999999999999999999998775433

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=4.6e-25  Score=184.26  Aligned_cols=159  Identities=29%  Similarity=0.552  Sum_probs=124.5

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ..|....+||+|+.|.||.|....+++.||||.+.......  .+.+.+|+.+|+..+|+|||.+++.|...+.+|+|||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~--keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPK--KELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCc--hhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            44788899999999999999999999999999997544333  4678999999999999999999999998999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Cccc-----------ccc-----------------cc
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRP-----------HIK-----------------EV  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~-----------~~~-----------------~~  145 (218)
                      |+++ +|.|.+......                          +++.           ++.                 .+
T Consensus       351 ym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmV  430 (550)
T KOG0578|consen  351 YMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMV  430 (550)
T ss_pred             ecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccCcccccc
Confidence            9998 888877654322                          1111           112                 23


Q ss_pred             CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc
Q 041487          146 GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL  202 (218)
Q Consensus       146 g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~  202 (218)
                      |++ |||||+ ...+.|++++||||||++++||+-|++||-..++-.-...+...+.|
T Consensus       431 GTPYWMAPEV-vtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P  487 (550)
T KOG0578|consen  431 GTPYWMAPEV-VTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTP  487 (550)
T ss_pred             CCCCccchhh-hhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCC
Confidence            444 899995 45555999999999999999999999999865444444444443433

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.92  E-value=1.5e-23  Score=168.53  Aligned_cols=146  Identities=46%  Similarity=0.783  Sum_probs=118.9

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||+|++..++..||+|.++...........+.+|+.++++++|||++++++++..+...++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            58899999999999999999988999999999876544445567788999999999999999999999999999999999


Q ss_pred             CCCChHHHhhhccc----C--------------------------Ccccc-----------cccc---------------
Q 041487          122 LDLDLGSFIRKHTI----T--------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       122 ~~~~L~~~~~~~~~----~--------------------------~~~~~-----------~~~~---------------  145 (218)
                      +.++|.+++.....    .                          ++++.           +.++               
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  160 (285)
T cd07861          81 LSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTH  160 (285)
T ss_pred             CCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccC
Confidence            99888888754221    0                          11111           1122               


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                         ...|+|||.+.....++.++|||||||++|+|+||+.||.+.
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         161 EVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             CcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence               224899997665566789999999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.92  E-value=2.6e-24  Score=177.17  Aligned_cols=150  Identities=24%  Similarity=0.375  Sum_probs=118.5

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||++.++.+++.+|+|++.+.. ........+.+|..++..++|++|+++++++...+..|+||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            47999999999999999999999999999999987532 23334566888999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-----------cccc--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~--------------  145 (218)
                      ||+.+ +|.+++......                            ++++.           +.++              
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  160 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQS  160 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceee
Confidence            99986 898888653211                            12221           1122              


Q ss_pred             ----C-CcccCcccccCC----CCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          146 ----G-SPYKAPESRIRS----SVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       146 ----g-~~y~aPE~~~~~----~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                          | ..|+|||.+...    +.++.++|||||||++|+|++|+.||...+..
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~  214 (331)
T cd05624         161 SVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV  214 (331)
T ss_pred             ccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHH
Confidence                2 249999965432    45788999999999999999999999876443

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.92  E-value=5.2e-24  Score=175.19  Aligned_cols=148  Identities=22%  Similarity=0.378  Sum_probs=115.9

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      +.||+|+||.||++.++.++..||+|++.+.. ........+.+|+.+++.++||||+++++.+...+.+++||||+++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999999999999999997543 2334456788999999999999999999999999999999999987 


Q ss_pred             ChHHHhhhcccC---------------------------Ccccc-----------cccc-----------------C-Cc
Q 041487          125 DLGSFIRKHTIT---------------------------SIRPH-----------IKEV-----------------G-SP  148 (218)
Q Consensus       125 ~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------------g-~~  148 (218)
                      +|.+++......                           +++|.           +.++                 | ..
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~  160 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPE  160 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcC
Confidence            787776543221                           22221           1122                 2 24


Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~  195 (218)
                      |+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...
T Consensus       161 y~aPE~~-~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~  206 (328)
T cd05593         161 YLAPEVL-EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFEL  206 (328)
T ss_pred             ccChhhh-cCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHH
Confidence            9999954 455589999999999999999999999987655544443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.92  E-value=1.4e-24  Score=182.82  Aligned_cols=160  Identities=29%  Similarity=0.440  Sum_probs=132.4

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...-....|.+++.||+|.|+.|.+|++..++..||||++.+........+.+-+|+.+++.++|||||+++.+......
T Consensus        50 ~~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~  129 (596)
T KOG0586|consen   50 DDSNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEAT  129 (596)
T ss_pred             cccccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecce
Confidence            33445677999999999999999999999999999999999888777777779999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC--------------------------------------Ccccccccc----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT--------------------------------------SIRPHIKEV----------  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~--------------------------------------~~~~~~~~~----------  145 (218)
                      +|+||||+.+ .+.+|+.+++..                                      +..-++.+|          
T Consensus       130 lylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~  209 (596)
T KOG0586|consen  130 LYLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGL  209 (596)
T ss_pred             eEEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeecccc
Confidence            9999999977 888888776543                                      111122333          


Q ss_pred             ------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          146 ------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       146 ------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                            |+ +|.|||.+.+.++.++.+|+||+|+++|.++.|.+||++.+-..+..
T Consensus       210 ~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~  265 (596)
T KOG0586|consen  210 MLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRP  265 (596)
T ss_pred             cccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccc
Confidence                  22 39999966666667789999999999999999999999885444433

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.91  E-value=1.1e-23  Score=169.28  Aligned_cols=157  Identities=47%  Similarity=0.793  Sum_probs=122.3

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++++.||.|++|.||+|++..++..+|+|.++.........+.+.+|+.++++++|||++++++++...+..+++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            58999999999999999999988999999999876554445557889999999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC-----------------------------Ccccc-----------cccc----------------
Q 041487          122 LDLDLGSFIRKHTIT-----------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~----------------  145 (218)
                      +.++|.+++......                             ++.+.           ..++                
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  160 (284)
T cd07860          81 LHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHE  160 (284)
T ss_pred             cccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccc
Confidence            988888776542211                             11111           1111                


Q ss_pred             --CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHH
Q 041487          146 --GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRY  198 (218)
Q Consensus       146 --g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~  198 (218)
                        ...|+|||.+.....++.++||||||+++|+|+||+.||...+ .+...+..+.
T Consensus       161 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~  216 (284)
T cd07860         161 VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT  216 (284)
T ss_pred             cccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence              1238999976665657889999999999999999999998763 3334444433

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.91  E-value=1.8e-23  Score=168.56  Aligned_cols=158  Identities=41%  Similarity=0.721  Sum_probs=117.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEcc-CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC---CCCCeeeeeeeEE-----e
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLE-TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---EHDNIVRLLDVLT-----T  111 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~-----~  111 (218)
                      .+|++.+.||+|+||.||+|.+.. .+..||+|.++...........+.+|+.+++.+   +||||+++++++.     .
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            369999999999999999999854 467899999876544444445666777777665   6999999999885     3


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC-----------------------------Ccccc-----------ccccC-----
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPH-----------IKEVG-----  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~g-----  146 (218)
                      ...++++|||++++|.+++......                             +++|.           +.++|     
T Consensus        81 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T cd07862          81 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY  160 (290)
T ss_pred             CCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEec
Confidence            4569999999999998887643211                             22221           12222     


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHh
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYF  199 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~  199 (218)
                                  ..|+|||.+ .+..++.++|||||||++|+|++|++||.+. +.+.+..+....
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~  225 (290)
T cd07862         161 SFQMALTSVVVTLWYRAPEVL-LQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI  225 (290)
T ss_pred             cCCcccccccccccccChHHH-hCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHh
Confidence                        238999965 4455899999999999999999999999877 344555555443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.91  E-value=7.8e-24  Score=176.40  Aligned_cols=149  Identities=31%  Similarity=0.501  Sum_probs=117.9

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++.+.||+|+||.||+|.+...++.+|+|.+..........+.+.+|+.+++.++||||+++++++...      
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            46789999999999999999999999999999999876544455567788999999999999999999987543      


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC-------------------------Ccccc-----------ccccC----------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT-------------------------SIRPH-----------IKEVG----------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~-------------------------~~~~~-----------~~~~g----------  146 (218)
                      ..+|+||||++++|.+++......                         +++|.           +.++|          
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~  181 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  181 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCc
Confidence            358999999998887766432110                         22222           12222          


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             ..|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+
T Consensus       182 ~~~~~~t~~y~aPE~~-~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  229 (364)
T cd07875         182 MTPYVVTRYYRAPEVI-LGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD  229 (364)
T ss_pred             ccCCcccCCcCCHHHH-hCCCCCchhhHHhHHHHHHHHHhCCCCCCCCC
Confidence                   238999954 45568999999999999999999999998763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.91  E-value=4.8e-24  Score=175.62  Aligned_cols=152  Identities=23%  Similarity=0.357  Sum_probs=119.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||++..+.++..+|+|++.+.. ......+.+.+|+.++..++|++|+++++.+.....+++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            47999999999999999999999999999999986532 23334556888999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-----------cccc--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~--------------  145 (218)
                      ||+.+ +|.+++......                            ++++.           +.++              
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~  160 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQS  160 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCccee
Confidence            99976 899888653211                            12221           1122              


Q ss_pred             ----C-CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          146 ----G-SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       146 ----g-~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                          | ..|+|||.+..    ...++.++|||||||++|+|++|+.||...+....
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~  216 (332)
T cd05623         161 SVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET  216 (332)
T ss_pred             cccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHH
Confidence                2 24999996642    34578999999999999999999999987644333

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=1.7e-23  Score=168.78  Aligned_cols=147  Identities=27%  Similarity=0.444  Sum_probs=115.6

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|++.+.||+|+||.||++.+..++..||+|.+...... ......+.+|+.+++.++||+|+++++.+..+..++++||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            488999999999999999999889999999998754322 2234567789999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC-----------------------------Ccccc-----------cccc--------------
Q 041487          121 YLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~--------------  145 (218)
                      |+.+ +|.+++......                             ++++.           +.++              
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  160 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRG  160 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCcccc
Confidence            9986 887776442211                             11111           1122              


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                        | ..|+|||.+ .+..++.++||||+||++|++++|+.||.+.+.
T Consensus       161 ~~~~~~y~aPE~~-~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~  206 (285)
T cd05605         161 RVGTVGYMAPEVV-KNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKE  206 (285)
T ss_pred             ccCCCCccCcHHh-cCCCCCccccchhHHHHHHHHHHCCCCCCCCch
Confidence              1 249999955 455689999999999999999999999987643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.91  E-value=1.6e-23  Score=165.62  Aligned_cols=149  Identities=24%  Similarity=0.457  Sum_probs=120.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|.+.+.||+|++|.||+|..+.++..|++|.+..........+.+.+|+.+++.++|||++++++.+...+..+++|||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            58899999999999999999999999999999876544555677889999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC--------------
Q 041487          122 LDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG--------------  146 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g--------------  146 (218)
                      +++ +|.+++......                             ++++.+           .++|              
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~  160 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANT  160 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhc
Confidence            976 999988664211                             111111           1111              


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                          ..|+|||.. ....++.++|+|||||++|+|++|+.||...+...
T Consensus       161 ~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  208 (256)
T cd08529         161 IVGTPYYLSPELC-EDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA  208 (256)
T ss_pred             cccCccccCHHHh-cCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                238899954 44558899999999999999999999998775443

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.91  E-value=1.1e-23  Score=172.31  Aligned_cols=170  Identities=23%  Similarity=0.304  Sum_probs=122.9

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.+..++..||+|.++.... .....+....|..++... +||||+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            469999999999999999999999999975432 223345566777777765 999999999999999999999999986


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           ++++.           +.++|                  .
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  160 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTP  160 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCc
Confidence             888887653221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccC---cccchhhhhhhccc
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT---NYLVLPCFLSIMLL  217 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~  217 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+....+..   .+..+.+++..||.
T Consensus       161 ~y~aPE~~-~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~  232 (316)
T cd05619         161 DYIAPEIL-LGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPRWLTREAKDILVKLFV  232 (316)
T ss_pred             cccCHHHH-cCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhc
Confidence            39999954 45568999999999999999999999998876655555544322211   12233456666553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.91  E-value=1.4e-23  Score=172.25  Aligned_cols=154  Identities=25%  Similarity=0.389  Sum_probs=118.8

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      +|+..+.||+|+||.||+|.++.++..||+|++++... .....+.+..|..++..+. |++++++++++...+.+|+||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            47889999999999999999999999999999975432 2344567788888888885 577888999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~---------------  145 (218)
                      ||+++ +|.+++......                           +++|.           +.++               
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~  160 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRT  160 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCccccC
Confidence            99986 888887653321                           22221           1222               


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                        | ..|+|||. ..+..++.++|||||||++|+|++|+.||...+...+...+
T Consensus       161 ~~gt~~y~aPE~-~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i  213 (323)
T cd05615         161 FCGTPDYIAPEI-IAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSI  213 (323)
T ss_pred             ccCCccccCHHH-HcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence              2 24999995 45566899999999999999999999999887555444433

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.91  E-value=1.8e-24  Score=177.81  Aligned_cols=151  Identities=26%  Similarity=0.406  Sum_probs=120.7

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|.++.++..+|+|.++.... .....+.+.+|+.+++.++|++|+++++.+.....+++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            469999999999999999999999999999999986432 3345677889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-------------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------------  146 (218)
                      ||+++ +|.+++......                            +++|.           +.++|             
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~  160 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNS  160 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceee
Confidence            99976 999888664211                            22221           11222             


Q ss_pred             ------CcccCcccccC-----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 ------SPYKAPESRIR-----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 ------~~y~aPE~~~~-----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                            ..|+|||.+..     ...++.++|||||||++|+|++|+.||.......
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~  216 (330)
T cd05601         161 KLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK  216 (330)
T ss_pred             ecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH
Confidence                  23999996542     4457889999999999999999999998764433

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.91  E-value=2e-26  Score=180.20  Aligned_cols=142  Identities=24%  Similarity=0.474  Sum_probs=117.8

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +-|.++++||+|+||.||+|.++.+|+.+|||.++    -+.+.+.+..|+.+++.++.|++|++|+.+.....+|+|||
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VP----V~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME  108 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVP----VDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME  108 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecC----ccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence            34889999999999999999999999999999876    34567889999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC----------------------------Cccccc-----------cc----------------
Q 041487          121 YLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KE----------------  144 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~----------------  144 (218)
                      ||.. ++.|.++.....                            +++..+           .+                
T Consensus       109 YCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNT  188 (502)
T KOG0574|consen  109 YCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNT  188 (502)
T ss_pred             hcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCc
Confidence            9975 787777644322                            222221           22                


Q ss_pred             -cCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 -VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 -~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                       .|++ |||||++.+-+ |+..+||||||++..||+.|++||...
T Consensus       189 VIGTPFWMAPEVI~EIG-Y~~~ADIWSLGITaIEMAEG~PPYsDI  232 (502)
T KOG0574|consen  189 VIGTPFWMAPEVIEEIG-YDTKADIWSLGITAIEMAEGRPPYSDI  232 (502)
T ss_pred             cccCcccccHHHHHHhc-cchhhhHhhhcchhhhhhcCCCCcccc
Confidence             3444 89999655555 899999999999999999999999865

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.91  E-value=1.1e-23  Score=173.53  Aligned_cols=152  Identities=22%  Similarity=0.422  Sum_probs=121.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++.+.||+|+||.||++.+..++..+|+|.+.... .....+.+.+|+.+++.++|+||+++++++..++.+++
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc-CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEE
Confidence            45688999999999999999999999899999999887532 23345678899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-----------  146 (218)
                      +|||+.+ +|.+++......                            ++++.           ..++|           
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~  160 (333)
T cd06650          81 CMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN  160 (333)
T ss_pred             EEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccc
Confidence            9999987 898887543221                            12221           12222           


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                           ..|+|||.+ .+..++.++|||||||++|++++|+.||.......
T Consensus       161 ~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~  209 (333)
T cd06650         161 SFVGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKE  209 (333)
T ss_pred             cCCCCccccCHHHh-cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhH
Confidence                 249999954 55568999999999999999999999998654433

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.91  E-value=1.3e-23  Score=189.78  Aligned_cols=153  Identities=33%  Similarity=0.573  Sum_probs=120.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--C
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--G  112 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~  112 (218)
                      ......++|++++.||+|+||.||+|.+..++..+|+|.+............+..|+.+++.++||||++++++|..  .
T Consensus         7 ~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~   86 (1021)
T PTZ00266          7 DGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKAN   86 (1021)
T ss_pred             CCccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCC
Confidence            34456789999999999999999999999999999999997655555566788999999999999999999998854  4


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcc-----cC---------------------------------Cccc-------------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHT-----IT---------------------------------SIRP-------------  140 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~-----~~---------------------------------~~~~-------------  140 (218)
                      ..+|+||||+++ +|.+++....     ..                                 +++|             
T Consensus        87 ~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg  166 (1021)
T PTZ00266         87 QKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIG  166 (1021)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccc
Confidence            679999999986 8877764310     00                                 1111             


Q ss_pred             ---------------cccccC-----------------CcccCcccccC-CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          141 ---------------HIKEVG-----------------SPYKAPESRIR-SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       141 ---------------~~~~~g-----------------~~y~aPE~~~~-~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                     ++.+||                 ..|+|||.+.. ...++.++|||||||++|+|+||+.||...
T Consensus       167 ~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~  246 (1021)
T PTZ00266        167 KITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA  246 (1021)
T ss_pred             cccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC
Confidence                           122232                 23999997654 345889999999999999999999999765

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.91  E-value=1.4e-23  Score=181.26  Aligned_cols=161  Identities=23%  Similarity=0.356  Sum_probs=123.5

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +.......++|++.+.||+|+||.||+|.+..+++.||+|.+............+.+|+.++..++|++++++++.+...
T Consensus        24 ~~~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~  103 (496)
T PTZ00283         24 EATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKK  103 (496)
T ss_pred             cccccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecc
Confidence            34444566899999999999999999999999999999999976555555567788999999999999999998877532


Q ss_pred             C--------EEEEEEecCCC-ChHHHhhhcccC-------------------------------Ccccc-----------
Q 041487          113 R--------YVYLVFEYLDL-DLGSFIRKHTIT-------------------------------SIRPH-----------  141 (218)
Q Consensus       113 ~--------~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------~~~~~-----------  141 (218)
                      .        .+++||||+++ +|.+++......                               +++|.           
T Consensus       104 ~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vk  183 (496)
T PTZ00283        104 DPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVK  183 (496)
T ss_pred             cccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEE
Confidence            2        47899999987 898887542110                               22221           


Q ss_pred             ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          142 IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       142 ~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                      +.+||                    ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+..
T Consensus       184 L~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~-~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~  255 (496)
T PTZ00283        184 LGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW-RRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMH  255 (496)
T ss_pred             EEecccCeeccccccccccccccCCcceeCHHHh-CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            12222                    239999954 55668999999999999999999999998765444333

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.91  E-value=5.8e-24  Score=174.31  Aligned_cols=149  Identities=24%  Similarity=0.391  Sum_probs=114.6

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|+++.+++.||+|++++... .....+.+..|..++..+ +||+|+++++++...+.+|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            368999999999999999999999999975432 234456677888888866 899999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           +++|.           +.++|                  .
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~  160 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTP  160 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCc
Confidence             887776543221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      .|+|||. ..+..++.++|||||||++|+|++|+.||...+.......+
T Consensus       161 ~y~aPE~-~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i  208 (321)
T cd05591         161 DYIAPEI-LQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESI  208 (321)
T ss_pred             cccCHHH-HcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence            3999995 44556899999999999999999999999887555444433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.91  E-value=9.9e-24  Score=172.94  Aligned_cols=170  Identities=21%  Similarity=0.319  Sum_probs=123.4

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.++.++..||+|++++.. ......+.+..|..++..+ +||||+++++++...+.+|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999999999999999997543 2334456777888888776 799999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           +++|.           +.++|                  .
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~  160 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTP  160 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCc
Confidence             888877654321                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccC---cccchhhhhhhccc
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT---NYLVLPCFLSIMLL  217 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~  217 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+.......   .+..+.++++.||+
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~  232 (320)
T cd05590         161 DYIAPEIL-QEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLSQDAVDILKAFMT  232 (320)
T ss_pred             cccCHHHH-cCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcc
Confidence            39999954 55568999999999999999999999998876555444443211111   12334455666653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.91  E-value=1.4e-23  Score=171.74  Aligned_cols=149  Identities=25%  Similarity=0.360  Sum_probs=112.7

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.+..++..||+|.++... ......+.+..|..++... +||||+++++++.....+++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999999999999999997543 2233345556666666654 899999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           ++++.           +.++|                  .
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~  160 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTP  160 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCc
Confidence             888877553321                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+...+...+
T Consensus       161 ~y~aPE~~-~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i  208 (316)
T cd05592         161 DYIAPEIL-KGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSI  208 (316)
T ss_pred             cccCHHHH-cCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            39999954 4556899999999999999999999999887655544443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>PHA02988 hypothetical protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=169.41  Aligned_cols=148  Identities=17%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEe----CCEEEEEEec
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTT----GRYVYLVFEY  121 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~E~  121 (218)
                      ..|++|+++.||+|..  ++..||+|.++...... ...+.+.+|+.++++++||||+++++++.+    ...++++|||
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            5799999999999987  78999999987543222 235778899999999999999999999876    4579999999


Q ss_pred             CCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC---------------
Q 041487          122 LDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG---------------  146 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g---------------  146 (218)
                      +++ +|.+++......                            ++++.           +.++|               
T Consensus       104 ~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  183 (283)
T PHA02988        104 CTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNF  183 (283)
T ss_pred             CCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhccccccccCc
Confidence            997 888887653221                            12221           11222               


Q ss_pred             CcccCcccccC-CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          147 SPYKAPESRIR-SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ~~y~aPE~~~~-~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      ..|+|||.+.. ...++.++|||||||++|+|++|+.||...+...+...+
T Consensus       184 ~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i  234 (283)
T PHA02988        184 MVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLI  234 (283)
T ss_pred             ccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence            34999996544 256899999999999999999999999987655544443

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-24  Score=174.84  Aligned_cols=146  Identities=27%  Similarity=0.483  Sum_probs=117.2

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC--EEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR--YVYL  117 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~l  117 (218)
                      ..++...+.||+|+||.||++.+.+++..+|+|.+.......  .+.+.+|+.+|++++||+||++++......  .+++
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~--~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i   93 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPT--SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNI   93 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchh--HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEe
Confidence            456788899999999999999998889999999987653222  677999999999999999999999854443  7999


Q ss_pred             EEecCCC-ChHHHhhhccc--C--------------------------Ccc------------ccccccCC---------
Q 041487          118 VFEYLDL-DLGSFIRKHTI--T--------------------------SIR------------PHIKEVGS---------  147 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~--~--------------------------~~~------------~~~~~~g~---------  147 (218)
                      .|||+++ +|.+++...+.  .                          +++            .++.+||.         
T Consensus        94 ~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~  173 (313)
T KOG0198|consen   94 FMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGT  173 (313)
T ss_pred             eeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccccc
Confidence            9999997 99999987652  1                          222            22334442         


Q ss_pred             ------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 ------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 ------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                  .|||||++..+...+..+|||||||++.||+||+.||...
T Consensus       174 ~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~  225 (313)
T KOG0198|consen  174 KSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF  225 (313)
T ss_pred             cccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh
Confidence                        2999997665433446999999999999999999999874

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-26  Score=175.03  Aligned_cols=160  Identities=31%  Similarity=0.484  Sum_probs=126.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..+.|.+-++||+|.|+.|+++.++.+|+.+|+|++..........+.+.+|+.+.+.++||||+++++.+......|+
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~yl   87 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL   87 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEE
Confidence            34567899999999999999999999999999999998766677788999999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhc----------cc-----------------CCccccc---------------------------
Q 041487          118 VFEYLDL-DLGSFIRKH----------TI-----------------TSIRPHI---------------------------  142 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~----------~~-----------------~~~~~~~---------------------------  142 (218)
                      |+|+++| .|-.-|-..          ..                 .+.+|++                           
T Consensus        88 vFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~  167 (355)
T KOG0033|consen   88 VFDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGE  167 (355)
T ss_pred             EEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCcc
Confidence            9999986 443222110          00                 1333332                           


Q ss_pred             ---cccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH-HHHHH
Q 041487          143 ---KEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS-LIVRY  198 (218)
Q Consensus       143 ---~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~-~~~~~  198 (218)
                         ...|++ |+||| +....+|+.++|||++||+||-++.|++||.+.+...+. ++.+.
T Consensus       168 ~~~G~~GtP~fmaPE-vvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g  227 (355)
T KOG0033|consen  168 AWHGFAGTPGYLSPE-VLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAG  227 (355)
T ss_pred             ccccccCCCcccCHH-HhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhcc
Confidence               112333 99999 556666999999999999999999999999995444444 44443

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.91  E-value=1.7e-23  Score=168.15  Aligned_cols=144  Identities=39%  Similarity=0.702  Sum_probs=116.3

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||+|.++.+|..+++|.++...........+.+|+.++++++|+|++++++++.+....++++||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            48899999999999999999999999999999976544444556778899999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC----------------------------Ccccc-----------cccc-----------------
Q 041487          122 LDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV-----------------  145 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~-----------------  145 (218)
                      ++++|.+++......                            ++++.           +.++                 
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  160 (284)
T cd07839          81 CDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEV  160 (284)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCc
Confidence            999988887643211                            11111           1111                 


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                       ...|+|||.+.....++.++|||||||++|+|+||+.||.
T Consensus       161 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~  201 (284)
T cd07839         161 VTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  201 (284)
T ss_pred             cccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCc
Confidence             1248999976666668999999999999999999988754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=176.76  Aligned_cols=160  Identities=26%  Similarity=0.398  Sum_probs=125.5

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~  114 (218)
                      -+...+|.++.+||+|+||.|.+|..+.+.+.+|||++++... ..++.+.-..|..+|.-. +-|.++.++.+|+.-++
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDR  424 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDR  424 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhh
Confidence            4677889999999999999999999999999999999987753 234456666777777766 57899999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhccc----C-----------------------Cccc-----------cc-------------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTI----T-----------------------SIRP-----------HI-------------  142 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~----~-----------------------~~~~-----------~~-------------  142 (218)
                      +|+||||+.+ +|--.++..+.    .                       +.+.           ++             
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~  504 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDG  504 (683)
T ss_pred             eeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCC
Confidence            9999999986 55433332111    0                       0100           11             


Q ss_pred             ----cccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          143 ----KEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       143 ----~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                          ..+|++ |+||| ++.+.+|+.++|.||+||+||||+.|++||++.+.+.+.+.+.
T Consensus       505 ~TTkTFCGTPdYiAPE-Ii~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~  563 (683)
T KOG0696|consen  505 VTTKTFCGTPDYIAPE-IIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIM  563 (683)
T ss_pred             cceeeecCCCcccccc-eEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence                234544 99999 7778889999999999999999999999999997777766544

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.91  E-value=2.2e-24  Score=157.70  Aligned_cols=164  Identities=41%  Similarity=0.745  Sum_probs=137.1

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|.-.++||+|.||+||+|+.+.+++.||+|.++....++.+.....+|+.+++.++|.|||+++++...++.+-+|.||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            45556789999999999999999999999999998777888889999999999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC----------------------------Cccccc-----------cccCC------c--------
Q 041487          122 LDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS------P--------  148 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~------~--------  148 (218)
                      |+.+|..|..+....                            +.+|++           .++|.      +        
T Consensus        83 cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvrcysaev  162 (292)
T KOG0662|consen   83 CDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEV  162 (292)
T ss_pred             hhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeecee
Confidence            998887777654321                            233322           22332      2        


Q ss_pred             ----ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCC-CcchHHHHHHHhcccCcc
Q 041487          149 ----YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCG-KKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       149 ----y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~-~~~~~~~~~~~~~~~~~~  205 (218)
                          |.+|.++++.+-|+.+.|+||-||++.|+.. |++.|+++ ..+.+.++.+.+|.|...
T Consensus       163 vtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed  225 (292)
T KOG0662|consen  163 VTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED  225 (292)
T ss_pred             eeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence                7777778888889999999999999999998 89999998 567888888888877653

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.91  E-value=6.8e-23  Score=165.01  Aligned_cols=155  Identities=42%  Similarity=0.721  Sum_probs=115.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC---CCCCeeeeeeeEEe-----CC
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---EHDNIVRLLDVLTT-----GR  113 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~~-----~~  113 (218)
                      +|++.+.||+|+||.||+|.++.+++.||+|.++...........+.+|+.+++.+   +||||+++++++..     ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            58899999999999999999999999999999876543443344566777777665   79999999998753     35


Q ss_pred             EEEEEEecCCCChHHHhhhcccC-----------------------------Ccccc-----------cccc--------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPH-----------IKEV--------  145 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~--------  145 (218)
                      .++++||++.++|.+++......                             +++|.           ..++        
T Consensus        81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~  160 (288)
T cd07863          81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSC  160 (288)
T ss_pred             eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccccC
Confidence            68999999998888887653211                             22221           1122        


Q ss_pred             ---------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHH
Q 041487          146 ---------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVR  197 (218)
Q Consensus       146 ---------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~  197 (218)
                               ...|+|||.+. +..++.++||||+||++|+|++|++||.... .+.+..+..
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~  221 (288)
T cd07863         161 QMALTPVVVTLWYRAPEVLL-QSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFD  221 (288)
T ss_pred             cccCCCccccccccCchHhh-CCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHH
Confidence                     12399999654 4558999999999999999999999998763 333444443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.91  E-value=2.7e-23  Score=170.09  Aligned_cols=151  Identities=23%  Similarity=0.346  Sum_probs=115.9

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.++.++..||+|.+++... .....+.+..|..++... +||+|+++++.+...+.+|+||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            469999999999999999999999999975432 233455667777777765 899999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           +++|.           +.++|                  .
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  160 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTP  160 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCc
Confidence             888777654221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+..
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~  210 (316)
T cd05620         161 DYIAPEIL-QGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRV  210 (316)
T ss_pred             CccCHHHH-cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence            39999954 455689999999999999999999999988766555555443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.91  E-value=9.3e-24  Score=174.51  Aligned_cols=150  Identities=31%  Similarity=0.574  Sum_probs=118.3

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++++.||+|+||.||+|.+..++..||+|.+..........+.+.+|+.+++.++||||+++++++...      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            35789999999999999999999999999999999875433334456678899999999999999999987533      


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC--------------------------Ccccc-----------ccccC---------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH-----------IKEVG---------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g---------  146 (218)
                      ...++++|++.++|.+++......                          +++|.           +.++|         
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  172 (343)
T cd07878          93 NEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEM  172 (343)
T ss_pred             CcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecCCCc
Confidence            457999999988888776543221                          22222           22222         


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                            ..|+|||.+.....++.++|||||||++|+|++|+.||...+
T Consensus       173 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  220 (343)
T cd07878         173 TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGND  220 (343)
T ss_pred             CCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCC
Confidence                  238999977665678999999999999999999999998763

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=2.9e-23  Score=174.60  Aligned_cols=140  Identities=19%  Similarity=0.366  Sum_probs=113.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +...+|++++.||+|+||.||+|.+..+++.||+|...        ...+.+|+.++++++||||+++++++......++
T Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~--------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~l  160 (391)
T PHA03212         89 IEKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ--------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCL  160 (391)
T ss_pred             cccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh--------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEE
Confidence            45578999999999999999999999999999999643        2346789999999999999999999999999999


Q ss_pred             EEecCCCChHHHhhhcccC---------------------------Cccccc-----------cccC-------------
Q 041487          118 VFEYLDLDLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------------  146 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------------  146 (218)
                      ++|++.++|..++......                           +++|.+           .++|             
T Consensus       161 v~e~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~  240 (391)
T PHA03212        161 ILPRYKTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKY  240 (391)
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCccccccccccccc
Confidence            9999988888776543221                           222221           2222             


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                            ..|+|||.+ .+..++.++|||||||++|+|++|+.||..
T Consensus       241 ~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvil~elltg~~p~~~  285 (391)
T PHA03212        241 YGWAGTIATNAPELL-ARDPYGPAVDIWSAGIVLFEMATCHDSLFE  285 (391)
T ss_pred             ccccCccCCCChhhh-cCCCCCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence                  238899954 455689999999999999999999987753

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.91  E-value=1.9e-23  Score=173.47  Aligned_cols=149  Identities=32%  Similarity=0.500  Sum_probs=117.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++.+.||+|+||.||+|.+...++.+|+|.+..........+.+.+|+.+++.++||||+++++++...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            45789999999999999999999988999999999875544445567788999999999999999999998643      


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC-------------------------Ccccc-----------ccccC----------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT-------------------------SIRPH-----------IKEVG----------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~-------------------------~~~~~-----------~~~~g----------  146 (218)
                      ...+++|||+++++.+++......                         +++|.           +.++|          
T Consensus        95 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~  174 (355)
T cd07874          95 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  174 (355)
T ss_pred             ceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCCccc
Confidence            357999999998887765432110                         22222           12222          


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             ..|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+
T Consensus       175 ~~~~~~t~~y~aPE~~-~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  222 (355)
T cd07874         175 MTPYVVTRYYRAPEVI-LGMGYKENVDIWSVGCIMGEMVRHKILFPGRD  222 (355)
T ss_pred             cCCccccCCccCHHHH-cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                   239999954 45568999999999999999999999998763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.91  E-value=5.7e-23  Score=165.94  Aligned_cols=153  Identities=26%  Similarity=0.434  Sum_probs=121.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|++|.||++.+..+++.+|+|.++.... .....+.+.+|+.++++++||||+++++++.....++++|
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            479999999999999999999998999999999875432 3345678899999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccc-----------ccccc--------------C
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEV--------------G  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~--------------g  146 (218)
                      ||+++ +|.+++......                           ++.+           .+.++              +
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  160 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCG  160 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCC
Confidence            99965 898887654321                           1111           11111              1


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                       ..|+|||.+. +...+.++||||||+++|+|++|+.||...+......
T Consensus       161 ~~~y~aPE~~~-~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~  208 (290)
T cd05580         161 TPEYLAPEIIL-SKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYE  208 (290)
T ss_pred             CccccChhhhc-CCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence             2399999654 4457889999999999999999999998765444333

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.91  E-value=7.4e-23  Score=166.70  Aligned_cols=150  Identities=33%  Similarity=0.649  Sum_probs=118.5

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RYVYL  117 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~l  117 (218)
                      .++|++.+.||+|+||.||+|.++.++..||+|.++...........+.+|+.++++++|+|++++++++...  +.+++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            5789999999999999999999999999999999976544444444567899999999999999999998654  57999


Q ss_pred             EEecCCCChHHHhhhcccC----------------------------Ccccc-----------cccc-------------
Q 041487          118 VFEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~-------------  145 (218)
                      ||||+.++|.+++......                            ++++.           +.++             
T Consensus        86 v~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~  165 (309)
T cd07845          86 VMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPM  165 (309)
T ss_pred             EEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCccCCC
Confidence            9999998888776643111                            11111           1111             


Q ss_pred             -----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 -----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 -----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                           ...|+|||.+.....++.++|||||||++|+|++|++||...+.
T Consensus       166 ~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~  214 (309)
T cd07845         166 TPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSE  214 (309)
T ss_pred             CcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                 12399999766666689999999999999999999999987643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.91  E-value=2.6e-23  Score=170.29  Aligned_cols=149  Identities=23%  Similarity=0.371  Sum_probs=115.3

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.++.++..||+|.+++.. ........+.+|..++..+ +||||+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999999999999999998643 2234456677888888888 799999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           ++++.           +.++|                  .
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~  160 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTP  160 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCc
Confidence             888777654221                           11111           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i  208 (318)
T cd05570         161 DYIAPEIL-SYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSI  208 (318)
T ss_pred             cccCHHHh-cCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHH
Confidence            39999954 5556899999999999999999999999877655544433

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.91  E-value=1.6e-23  Score=171.97  Aligned_cols=170  Identities=22%  Similarity=0.336  Sum_probs=119.5

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHH-HHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVS-LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.+..+++.+|+|++.+... .......+..|.. +++.++||||+++++.+...+.+++||||+.+
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            469999999999999999999999999975432 2222334444443 56778999999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           ++++.           +.++|                  .
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~  160 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTP  160 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCc
Confidence             887777543221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHh-c--ccCcccchhhhhhhccc
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYF-T--ALTNYLVLPCFLSIMLL  217 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~  217 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+... .  .+..+..+.+++..||+
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~  232 (325)
T cd05602         161 EYLAPEVL-HKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQ  232 (325)
T ss_pred             cccCHHHH-cCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcc
Confidence            39999954 4566899999999999999999999999876544443333221 1  11223445556666664

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.91  E-value=5.7e-24  Score=174.64  Aligned_cols=170  Identities=21%  Similarity=0.291  Sum_probs=124.4

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      +.||+|+||.||++.++.++..||+|++++... .......+.+|+.+++.++||||+++++.+...+.+++||||+++ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            469999999999999999999999999986432 233456778899999999999999999999999999999999987 


Q ss_pred             ChHHHhhhcccC----------------------------Cccccc-----------cccC------------------C
Q 041487          125 DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG------------------S  147 (218)
Q Consensus       125 ~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g------------------~  147 (218)
                      +|.+++......                            +++|.+           .++|                  .
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~  160 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTP  160 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCc
Confidence            777666443211                            222221           2222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc---Ccccchhhhhhhccc
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL---TNYLVLPCFLSIMLL  217 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~  217 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+.+.+...+......   ..+..+.+++..||+
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~  232 (325)
T cd05594         161 EYLAPEVL-EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLK  232 (325)
T ss_pred             ccCCHHHH-ccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhh
Confidence            39999954 4556899999999999999999999999877665555444321111   123344555555553

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.91  E-value=1.1e-22  Score=163.54  Aligned_cols=147  Identities=35%  Similarity=0.673  Sum_probs=115.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|++|.||+|.++.+++.+|+|.+..........+.+.+|+.+++.++|+|++++++.+......+++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            47999999999999999999998899999999987544334445678899999999999999999999999999999999


Q ss_pred             cCCCChHH-HhhhcccC---------------------------Ccccc-----------cccc----------------
Q 041487          121 YLDLDLGS-FIRKHTIT---------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       121 ~~~~~L~~-~~~~~~~~---------------------------~~~~~-----------~~~~----------------  145 (218)
                      |+++++.+ +.......                           ++++.           +.++                
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  160 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDY  160 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcccccCc
Confidence            99874433 33221111                           11111           1111                


Q ss_pred             --CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                        ...|+|||.+.....++.++||||||+++|+|++|+.||.+.
T Consensus       161 ~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~  204 (286)
T cd07847         161 VATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGK  204 (286)
T ss_pred             ccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence              123899997655566889999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.91  E-value=2e-23  Score=171.33  Aligned_cols=145  Identities=26%  Similarity=0.503  Sum_probs=112.2

Q ss_pred             EEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCC--CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           46 VEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNE--PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++.||+|+||.||++...   ..++.||+|+++....  .......+.+|+.+++.++||||+++++.+..++.+|++||
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEe
Confidence            368999999999999863   4688999999975432  22345677889999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC---------------------------Cccc-----------cccccC---------------
Q 041487          121 YLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEVG---------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~g---------------  146 (218)
                      |+++ +|.+++......                           ++++           .+.++|               
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  160 (323)
T cd05584          81 YLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTF  160 (323)
T ss_pred             CCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCccccc
Confidence            9987 888877544321                           1222           112222               


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                         ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...
T Consensus       161 ~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~  207 (323)
T cd05584         161 CGTIEYMAPEIL-MRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK  207 (323)
T ss_pred             CCCccccChhhc-cCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH
Confidence               239999955 44557899999999999999999999998765443

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.91  E-value=3e-23  Score=170.75  Aligned_cols=139  Identities=22%  Similarity=0.380  Sum_probs=110.7

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.++.+++.||+|++++... .....+.+.+|..++..+ +||||+++++++.....+|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            368999999999999999999999999986542 234456788899999988 799999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           +++|.           +.++|                  .
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~  160 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTP  160 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCc
Confidence             888777543221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                      .|+|||.+ .+..++.++|+|||||++|+|++|+.||+.
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         161 NYIAPEIL-RGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             cccCHHHH-cCCCCCCccceechHHHHHHHHHCCCCccc
Confidence            39999954 455689999999999999999999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.91  E-value=5.1e-23  Score=177.30  Aligned_cols=152  Identities=20%  Similarity=0.326  Sum_probs=116.8

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccC-CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLET-GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ...|.+.+.||+|++|.||+|....+ +..||+|.+...  .......+.+|+.+++.++||||+++++++...+..|+|
T Consensus        66 ~~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~--~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv  143 (478)
T PTZ00267         66 EHMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN--DERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLI  143 (478)
T ss_pred             ceeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEE
Confidence            34599999999999999999998777 788999976432  233345778899999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcc----cC---------------------------Cccccc-----------ccc----------
Q 041487          119 FEYLDL-DLGSFIRKHT----IT---------------------------SIRPHI-----------KEV----------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~----~~---------------------------~~~~~~-----------~~~----------  145 (218)
                      |||+++ +|.+++....    ..                           +++|.+           .++          
T Consensus       144 ~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~  223 (478)
T PTZ00267        144 MEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             EECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCcc
Confidence            999986 8987764311    00                           222211           111          


Q ss_pred             ---------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          146 ---------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       146 ---------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                               |+ .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+..
T Consensus       224 ~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~  281 (478)
T PTZ00267        224 SLDVASSFCGTPYYLAPELW-ERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQ  281 (478)
T ss_pred             ccccccccCCCccccCHhHh-CCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                     22 39999954 45568999999999999999999999998765444333

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.91  E-value=1.2e-23  Score=172.65  Aligned_cols=170  Identities=24%  Similarity=0.373  Sum_probs=120.4

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHH-HHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVS-LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.++.+++.+|+|++.+... .......+..|.. +++.++||||+++++.+...+..++||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            468999999999999999999999999975432 2333445555554 46778999999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           ++++.           +.++|                  .
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~  160 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTP  160 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCCh
Confidence             777776543221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhc---ccCcccchhhhhhhccc
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFT---ALTNYLVLPCFLSIMLL  217 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~  217 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+....   .+..+..+.+++..||.
T Consensus       161 ~y~aPE~~-~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  232 (325)
T cd05604         161 EYLAPEVI-RKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLRPGASLTAWSILEELLE  232 (325)
T ss_pred             hhCCHHHH-cCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhc
Confidence            39999954 45568999999999999999999999998875555444333211   11223344456666653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.91  E-value=1.8e-23  Score=171.37  Aligned_cols=149  Identities=26%  Similarity=0.448  Sum_probs=111.6

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHH-HHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVS-LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|++..+++.+|+|++.+... .......+.+|.. +++.++||||+++++.+...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            469999999999999999999999999975432 2233345555554 67888999999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           ++++.           +.++|                  .
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  160 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTP  160 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCc
Confidence             787766543211                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i  208 (321)
T cd05603         161 EYLAPEVL-RKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNI  208 (321)
T ss_pred             ccCCHHHh-cCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHH
Confidence            39999954 4556899999999999999999999999887654444433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.90  E-value=5.3e-23  Score=171.07  Aligned_cols=161  Identities=31%  Similarity=0.483  Sum_probs=129.7

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRY  114 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~  114 (218)
                      .-....|.+.+.||+|.||.||.|+.+.+|..+|+|++++.... ......+.+|+.+|+.+. ||||+.+++.|.....
T Consensus        31 ~~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~  110 (382)
T KOG0032|consen   31 EDIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDS  110 (382)
T ss_pred             ccccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCe
Confidence            34566799999999999999999999999999999999876543 234678999999999997 9999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhc-ccC-------------------------Cccc---------------ccccc-------
Q 041487          115 VYLVFEYLDL-DLGSFIRKH-TIT-------------------------SIRP---------------HIKEV-------  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~-~~~-------------------------~~~~---------------~~~~~-------  145 (218)
                      +++|||+|.+ .|.+.+... -..                         +.+|               +..+|       
T Consensus       111 ~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  111 VYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             EEEEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence            9999999997 888888775 111                         2222               12233       


Q ss_pred             ---------CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          146 ---------GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 ---------g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                               |++ |+|||+ .....|+..+|+||+|+++|.|++|.+||.+.........+..
T Consensus       191 ~~~~~~~~~Gtp~y~APEv-l~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~  252 (382)
T KOG0032|consen  191 PGERLHTIVGTPEYVAPEV-LGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILR  252 (382)
T ss_pred             CCceEeeecCCccccCchh-hcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHc
Confidence                     322 999995 4445699999999999999999999999998865555554444

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.90  E-value=1e-22  Score=163.61  Aligned_cols=146  Identities=36%  Similarity=0.678  Sum_probs=119.0

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||+|.+..++..+++|.+............+.+|+.++++++|||++++++++..+...++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            58999999999999999999988999999999986554455567899999999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC----------------------------Cccccc-----------cc------------------
Q 041487          122 LDLDLGSFIRKHTIT----------------------------SIRPHI-----------KE------------------  144 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~------------------  144 (218)
                      +.++|.+++......                            ++++.+           .+                  
T Consensus        81 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  160 (286)
T cd07832          81 MPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQ  160 (286)
T ss_pred             cCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccc
Confidence            966998887543211                            111111           11                  


Q ss_pred             -cCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 -VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 -~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                       ....|+|||.+.....++.++||||+||++|+|++|++||.+.
T Consensus       161 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~  204 (286)
T cd07832         161 VATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGE  204 (286)
T ss_pred             cCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCC
Confidence             1224899997766666789999999999999999999999766

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.90  E-value=1.9e-23  Score=171.33  Aligned_cols=170  Identities=24%  Similarity=0.372  Sum_probs=119.8

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHH-HHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVS-LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.++.+++.||+|++.+... .......+..|.. +++.++||||+++++.+......++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            469999999999999999999999999975432 2233344555554 56778999999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           ++++.           +.++|                  .
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  160 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTP  160 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCCh
Confidence             887777543221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhc---ccCcccchhhhhhhccc
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFT---ALTNYLVLPCFLSIMLL  217 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~  217 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+...+...+....   ++..+..+.+++..||+
T Consensus       161 ~y~aPE~~-~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~  232 (323)
T cd05575         161 EYLAPEVL-RKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQ  232 (323)
T ss_pred             hhcChhhh-cCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhh
Confidence            39999954 45568999999999999999999999998875544443332211   11123344455555553

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.90  E-value=4.3e-23  Score=169.83  Aligned_cols=146  Identities=19%  Similarity=0.365  Sum_probs=114.6

Q ss_pred             ceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCC--CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      +|++.+.||+|+||.||+++..   .++..+|+|++.+..  ......+.+.+|+.+++.+ +|++|+++++++...+.+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            5899999999999999999864   468899999997543  2234456788899999999 599999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG----------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g----------  146 (218)
                      +++|||+++ +|.+++......                           ++++.           +.++|          
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~  160 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK  160 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCC
Confidence            999999987 888887553321                           22221           12222          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               ..|+|||.+.....++.++|||||||++|+|+||+.||...
T Consensus       161 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  210 (332)
T cd05614         161 ERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLE  210 (332)
T ss_pred             CccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCC
Confidence                     23999997655455788999999999999999999999754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.90  E-value=8.7e-23  Score=165.01  Aligned_cols=147  Identities=50%  Similarity=0.838  Sum_probs=118.7

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|++|.||+|.++.+++.+|+|.+..........+.+.+|+.++++++|||++++++++......++|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            57999999999999999999998899999999987554444555678899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC-----------------------------Cccc------------cccccC-------------
Q 041487          121 YLDLDLGSFIRKHTIT-----------------------------SIRP------------HIKEVG-------------  146 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~-----------------------------~~~~------------~~~~~g-------------  146 (218)
                      |++++|.+++......                             ++++            .+.++|             
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~  161 (294)
T PLN00009         82 YLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFT  161 (294)
T ss_pred             cccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccccc
Confidence            9988887776432211                             1111            111221             


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                           ..|+|||.+.....++.++|||||||++|+|+||+.||...
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~  207 (294)
T PLN00009        162 HEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGD  207 (294)
T ss_pred             cCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                 23899997655566889999999999999999999999865

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.90  E-value=4.9e-23  Score=163.94  Aligned_cols=156  Identities=24%  Similarity=0.441  Sum_probs=123.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +...+|.+.+.||+|++|.||+|..+.++..+++|.+...   ......+.+|+.++++++|++++++++++..++.+++
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   79 (263)
T cd05052           3 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI   79 (263)
T ss_pred             CchHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC---chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEE
Confidence            4567799999999999999999999989999999998632   2234678899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +|||+++ +|.+++......                             +++|.+           .++|          
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~  159 (263)
T cd05052          80 ITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  159 (263)
T ss_pred             EEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCcccccccccee
Confidence            9999976 899888653211                             222221           1211          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                               ..|+|||. ..+..++.++|||||||++|+|++ |..||++.+.+.....+.
T Consensus       160 ~~~~~~~~~~~y~aPE~-~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~  219 (263)
T cd05052         160 TAHAGAKFPIKWTAPES-LAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE  219 (263)
T ss_pred             eccCCCCCccccCCHHH-hccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence                     23999995 455668999999999999999999 999998876666555544

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.90  E-value=1.4e-22  Score=160.43  Aligned_cols=153  Identities=22%  Similarity=0.357  Sum_probs=122.0

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|+..+.||+|+||.|+.+.+..++..+++|.+..........+.+.+|+.++++++|+|++++++++.....++++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            58999999999999999999999999999999876555555667888999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC-----------------------------Ccccc-----------cccc---------------
Q 041487          122 LDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~---------------  145 (218)
                      +++ +|.+++......                             ++++.           +.++               
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~  160 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAET  160 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccccccc
Confidence            986 999888654111                             11111           1111               


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~  195 (218)
                         ...|.|||.+. +..++.++|+||||+++|+|++|+.||...+.......
T Consensus       161 ~~~~~~y~ape~~~-~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~  212 (256)
T cd08221         161 VVGTPYYMSPELCQ-GVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVK  212 (256)
T ss_pred             cCCCccccCHhhcC-CCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence               22388999554 44478899999999999999999999987654444333

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.90  E-value=4.2e-23  Score=163.69  Aligned_cols=147  Identities=27%  Similarity=0.418  Sum_probs=119.0

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +|++.+.||.|+||.||+|.+..++..+++|.+...... ....+.+.+|+.++++++||||+++++.+......++++|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            589999999999999999999888999999999765432 2557789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc----------------
Q 041487          121 YLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~----------------  145 (218)
                      |+.+ +|.+++......                           ++.+.           ..++                
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~  160 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTS  160 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccC
Confidence            9987 888888665221                           11111           1111                


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                       ...|+|||.+ ....++.++|+||||+++|++++|+.||...+.
T Consensus       161 ~~~~y~~PE~~-~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  204 (258)
T cd05578         161 GTPGYMAPEVL-CRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSR  204 (258)
T ss_pred             CChhhcCHHHH-cccCCCCcccchhhHHHHHHHHhCCCCCCCCCc
Confidence             1238999954 444489999999999999999999999997753

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=8.4e-23  Score=162.21  Aligned_cols=147  Identities=27%  Similarity=0.515  Sum_probs=116.8

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC---CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE---GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ++|++.+.||+|++|.||+|.+..++..+++|.++......   ...+.+.+|+.++++++||||+++++++.....+++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            57999999999999999999998899999999987543222   234578899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------  146 (218)
                      ++||+++ +|.+++......                           ++.+.           +.++|            
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~  161 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSG  161 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecccccccc
Confidence            9999987 888877643221                           11111           11111            


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                               ..|+|||.+ .+..++.++||||||+++|++++|+.||...+
T Consensus       162 ~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  211 (263)
T cd06625         162 TGMKSVTGTPYWMSPEVI-SGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE  211 (263)
T ss_pred             ccccCCCcCccccCccee-ccCCCCchhhhHHHHHHHHHHHhCCCCccccc
Confidence                     248999954 44558999999999999999999999997653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.90  E-value=1.3e-22  Score=163.76  Aligned_cols=148  Identities=42%  Similarity=0.729  Sum_probs=118.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|++|.||+|.++.++..||+|.+..... ......+.+|+.+++.++|+||+++++++......++||
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHE-EGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVF   82 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccc-cCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEE
Confidence            5789999999999999999999988899999999875432 223345678999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Cccc-----------cccccC--------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRP-----------HIKEVG--------------  146 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~-----------~~~~~g--------------  146 (218)
                      ||+.++|.+++......                            ++++           ...++|              
T Consensus        83 e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  162 (291)
T cd07844          83 EYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSN  162 (291)
T ss_pred             ecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCccccc
Confidence            99999998887653221                            1111           112222              


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ..|+|||.+.....++.++||||+|+++|+|++|+.||....
T Consensus       163 ~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  208 (291)
T cd07844         163 EVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGST  208 (291)
T ss_pred             cccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence                238999976655668899999999999999999999997653

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.90  E-value=2.6e-23  Score=172.61  Aligned_cols=150  Identities=25%  Similarity=0.442  Sum_probs=113.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ...++|+.++.||+|+||.||+|.+..+++.||+|++.... .....+.+.+|+.+++.++|+||+++++++...+.+++
T Consensus        71 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  149 (353)
T PLN00034         71 KSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH-EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQV  149 (353)
T ss_pred             CCHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC-cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEE
Confidence            34567899999999999999999999899999999986432 23345678899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhh---------------------hccc--CCccc-----------ccccc-----------------
Q 041487          118 VFEYLDL-DLGSFIR---------------------KHTI--TSIRP-----------HIKEV-----------------  145 (218)
Q Consensus       118 v~E~~~~-~L~~~~~---------------------~~~~--~~~~~-----------~~~~~-----------------  145 (218)
                      ||||+++ +|.+...                     ..+.  .++++           ++.++                 
T Consensus       150 v~e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~  229 (353)
T PLN00034        150 LLEFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSV  229 (353)
T ss_pred             EEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccc
Confidence            9999976 5533211                     0000  01111           11222                 


Q ss_pred             C-CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 G-SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 g-~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                      | ..|+|||.+..    +...+.++|||||||++|+|++|+.||....
T Consensus       230 gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~  277 (353)
T PLN00034        230 GTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGR  277 (353)
T ss_pred             cCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCC
Confidence            2 24999996532    3345678999999999999999999998543

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.90  E-value=1.4e-22  Score=161.35  Aligned_cols=146  Identities=27%  Similarity=0.502  Sum_probs=115.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC---CCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--CCEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP---EGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--GRYV  115 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~  115 (218)
                      .+|++.+.||+|+||.||.+.+..++..|++|.+......   ....+.+.+|+.+++++.||||+++++++.+  ...+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            5799999999999999999999999999999998643322   1235678899999999999999999998865  4578


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccc-----------cccccC----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEVG----------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~g----------  146 (218)
                      +++|||+++ +|.+++......                           ++++           .+.++|          
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~  161 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICL  161 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccc
Confidence            999999986 899887654321                           1111           112222          


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                 ..|+|||.+. +..++.++|||||||++|++++|+.||...
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~il~el~~g~~p~~~~  212 (265)
T cd06652         162 SGTGMKSVTGTPYWMSPEVIS-GEGYGRKADIWSVGCTVVEMLTEKPPWAEF  212 (265)
T ss_pred             cccccccCCCCccccChhhhc-CCCCCcchhHHHHHHHHHHHhhCCCCCCcc
Confidence                       2399999654 455889999999999999999999999765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.90  E-value=1.5e-22  Score=164.71  Aligned_cols=156  Identities=26%  Similarity=0.417  Sum_probs=122.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||++.++.+++.|++|.+..... .....+.+.+|+.+++.++||||+++++.+..++.++++|
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            479999999999999999999999999999999875432 2334567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+++ +|.+++......                           +++|.           ..++|              
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~  160 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLY  160 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCcccccc
Confidence            99987 888887653321                           11111           11222              


Q ss_pred             -------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 -------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                         ..|+|||.+.. ..++.++|+|||||++|++++|+.||.+.....+.....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~  229 (305)
T cd05609         161 EGHIEKDTREFLDKQVCGTPEYIAPEVILR-QGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVI  229 (305)
T ss_pred             ccccccchhhccccCCccCccccCchhccC-CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence                               13899996544 458999999999999999999999998775555444433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.90  E-value=1.9e-22  Score=159.48  Aligned_cols=154  Identities=27%  Similarity=0.464  Sum_probs=122.7

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||++.+..++..+++|.+............+.+|+.++++++|||++++++.+...+..++||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            58999999999999999999989999999999986554555567899999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC-----------------------------Cccc------------ccccc--------------
Q 041487          122 LDL-DLGSFIRKHTIT-----------------------------SIRP------------HIKEV--------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~-----------------------------~~~~------------~~~~~--------------  145 (218)
                      +++ +|.+++......                             ++++            ...++              
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~  160 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYT  160 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccc
Confidence            987 898888653211                             1111            11111              


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                        + ..|+|||.+ .+..++.++||||||+++|++++|+.||...+.......+
T Consensus       161 ~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~  213 (256)
T cd08220         161 VVGTPCYISPELC-EGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKI  213 (256)
T ss_pred             cccCCcccCchhc-cCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHH
Confidence              1 239999955 4455789999999999999999999999877554444333

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.90  E-value=1.2e-22  Score=163.79  Aligned_cols=145  Identities=27%  Similarity=0.453  Sum_probs=115.1

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|+..+.||+|+||.||++.+..+++.+|+|.+....... .....+.+|+.++++++|++++.+++.+...+..+++||
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            3788899999999999999999999999999987543322 234567789999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC-----------------------------Ccccc-----------cccc--------------
Q 041487          121 YLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~--------------  145 (218)
                      |+.+ +|.+++......                             ++++.           +.++              
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  160 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG  160 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccC
Confidence            9986 888877433211                             12221           1122              


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                        | ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       161 ~~g~~~y~aPE~~-~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~  204 (285)
T cd05630         161 RVGTVGYMAPEVV-KNERYTFSPDWWALGCLLYEMIAGQSPFQQR  204 (285)
T ss_pred             CCCCccccChHHH-cCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence              1 248999954 4556899999999999999999999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1e-22  Score=163.00  Aligned_cols=149  Identities=23%  Similarity=0.435  Sum_probs=118.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||.|++|.||+|.+..++..+++|.+.... .......+.+|+.+++.++|+|++++++.+..+..+++++|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE-AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIME   79 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccc-cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEE
Confidence            36888999999999999999999899999999987543 23445678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Ccccc-----------ccccC----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEVG----------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g----------------  146 (218)
                      |+.+ +|.+++......                          ++++.           ..++|                
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (274)
T cd06609          80 YCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFV  159 (274)
T ss_pred             eeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeeccccccccccc
Confidence            9987 888887764221                          11111           11111                


Q ss_pred             --CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 --SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 --~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                        ..|+|||.+.. ..++.++||||||+++|+|+||+.||...+...
T Consensus       160 ~~~~y~~PE~~~~-~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~  205 (274)
T cd06609         160 GTPFWMAPEVIKQ-SGYDEKADIWSLGITAIELAKGEPPLSDLHPMR  205 (274)
T ss_pred             CCccccChhhhcc-CCCCchhhHHHHHHHHHHHHhCCCCcccCchHH
Confidence              13899996554 448999999999999999999999998764333

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.90  E-value=1.4e-22  Score=161.44  Aligned_cols=146  Identities=29%  Similarity=0.529  Sum_probs=116.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|....++..||+|.++... ........+.+|+.+++.++|||++++++.+...+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            57999999999999999999998899999999887543 23344567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhccc----C---------------------------Ccccc-----------ccccC----------
Q 041487          120 EYLDL-DLGSFIRKHTI----T---------------------------SIRPH-----------IKEVG----------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~----~---------------------------~~~~~-----------~~~~g----------  146 (218)
                      ||+++ +|.+++.....    .                           ++++.           +.++|          
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~  161 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhH
Confidence            99997 88877643111    0                           11111           11222          


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ..|+|||.+. +..++.++|+||||+++|+|++|+.||...
T Consensus       162 ~~~~~~~~~~~~aPE~~~-~~~~~~~~Di~slG~~l~el~~g~~p~~~~  209 (267)
T cd08228         162 AAHSLVGTPYYMSPERIH-ENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             HHhcCCCCccccChhhhc-cCCCCchhhHHHHHHHHHHHhcCCCCCccc
Confidence                    2389999654 445789999999999999999999999765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.90  E-value=1.8e-22  Score=164.05  Aligned_cols=153  Identities=33%  Similarity=0.645  Sum_probs=118.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++.+.||+|+||.||+|.+..++..||+|.+............+.+|+.++++++||||+++++++...      
T Consensus        10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            34679999999999999999999999999999999875544444445667899999999999999999998654      


Q ss_pred             --CEEEEEEecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC-----
Q 041487          113 --RYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-----  146 (218)
Q Consensus       113 --~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-----  146 (218)
                        ...+++|||+.++|.+++......                            ++++.           +.++|     
T Consensus        90 ~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  169 (310)
T cd07865          90 YKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAF  169 (310)
T ss_pred             CCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccc
Confidence              346999999998888776543211                            11111           11111     


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                                       ..|+|||.+.....++.++||||||+++|+|++|+.||.+.+...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~  231 (310)
T cd07865         170 SLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQH  231 (310)
T ss_pred             cCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                             238999976655557889999999999999999999998775443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.90  E-value=8.6e-23  Score=161.84  Aligned_cols=153  Identities=25%  Similarity=0.385  Sum_probs=116.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      +.++|++.+.||+|+||.||++..+ .+..+|+|.+....   ...+.+.+|+.++++++||||+++++++......+++
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~-~~~~~a~K~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   77 (256)
T cd05114           2 NPSELTFMKELGSGQFGVVHLGKWR-AQIKVAIKAINEGA---MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIV   77 (256)
T ss_pred             CHHHcEEeeEecCCcCceEEEEEec-cCceEEEEecccCC---ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEE
Confidence            3467999999999999999999864 45689999876332   2246788899999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG------------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g------------  146 (218)
                      |||+++ +|.+++......                            ++++.           +.++|            
T Consensus        78 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~  157 (256)
T cd05114          78 TEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTS  157 (256)
T ss_pred             EEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCceec
Confidence            999986 888887643211                            11111           11211            


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                             ..|+|||.+ .+..++.++||||||+++|++++ |+.||...+.......+
T Consensus       158 ~~~~~~~~~y~aPE~~-~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i  214 (256)
T cd05114         158 SSGAKFPVKWSPPEVF-NFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMI  214 (256)
T ss_pred             cCCCCCchhhCChhhc-ccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence                   248999954 45568899999999999999999 99999877544443333

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.90  E-value=2.6e-22  Score=161.98  Aligned_cols=147  Identities=38%  Similarity=0.712  Sum_probs=117.1

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..+|++.+.||+|+||.||+|.+..++..+++|.++.... ......+.+|+.+++.++|+||+++++++......+++|
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTE-EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCc-CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            4689999999999999999999988999999999875432 233446778999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+.+++.+++......                            ++++.           ..++|              
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  162 (291)
T cd07870          83 EYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSS  162 (291)
T ss_pred             ecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCC
Confidence            99988887776542211                            12111           12222              


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                          ..|+|||.+.....++.++|||||||++|++++|+.||...
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~  207 (291)
T cd07870         163 EVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGV  207 (291)
T ss_pred             ccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCc
Confidence                23899997655555788999999999999999999999865

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.90  E-value=5.3e-23  Score=169.27  Aligned_cols=138  Identities=22%  Similarity=0.400  Sum_probs=109.2

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.++.+++.+|+|++++... .....+.+.+|+.++.++ +||||+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            369999999999999999999999999986532 334456778888888777 899999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           +++|.           +.++|                  .
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~  160 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTP  160 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCc
Confidence             887776543221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||.
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslG~il~el~~g~~Pf~  197 (329)
T cd05618         161 NYIAPEIL-RGEDYGFSVDWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             cccCHHHH-cCCCCCCccceecccHHHHHHhhCCCCCc
Confidence            38999954 45668999999999999999999999996

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.90  E-value=1.5e-22  Score=160.29  Aligned_cols=150  Identities=27%  Similarity=0.447  Sum_probs=117.6

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE-eCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT-TGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~lv~E  120 (218)
                      +|++.+.||+|++|.||++.++.+++.+|+|.+..........+.+.+|+.++++++|+|++++++.+. .+..++++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            589999999999999999999888999999998765444455677889999999999999999999876 4557899999


Q ss_pred             cCCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc--------------
Q 041487          121 YLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV--------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~--------------  145 (218)
                      |+++ +|.+++......                             ++++.+           .++              
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~  160 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMAS  160 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCCccc
Confidence            9986 888887652110                             222211           111              


Q ss_pred             ---C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          146 ---G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       146 ---g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                         + ..|+|||. ..+..++.++||||||+++|++++|+.||...+....
T Consensus       161 ~~~~~~~y~aPE~-~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~  210 (257)
T cd08223         161 TLIGTPYYMSPEL-FSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSL  210 (257)
T ss_pred             cccCCcCccChhH-hcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence               1 23899995 4555688999999999999999999999987654433

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=4.8e-23  Score=165.32  Aligned_cols=150  Identities=24%  Similarity=0.424  Sum_probs=118.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||.|++|.||++....++..+++|.+...  .....+.+.+|+.++++++|+|++++++.+..+...++|||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE--SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC--CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            5699999999999999999999888999999998643  33345678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC--------------
Q 041487          121 YLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------  146 (218)
                      |+++ +|.+++......                            ++++.           +.++|              
T Consensus        83 ~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~  162 (280)
T cd06611          83 FCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDT  162 (280)
T ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhcccccccce
Confidence            9988 888877553211                            12221           11222              


Q ss_pred             ----CcccCccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          147 ----SPYKAPESRI----RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       147 ----~~y~aPE~~~----~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                          ..|++||.+.    ....++.++|+||||+++|+|++|+.||...+....
T Consensus       163 ~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~  216 (280)
T cd06611         163 FIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRV  216 (280)
T ss_pred             eecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHH
Confidence                2389999654    234578899999999999999999999987654443

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.90  E-value=3.5e-23  Score=165.95  Aligned_cols=157  Identities=24%  Similarity=0.422  Sum_probs=121.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ...+|.+.+.||+|+||.||+|....     .+..+|+|.++... .....+.+.+|+.+++.++|+|++++++++....
T Consensus         3 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           3 QRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETA-SNDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             ChHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccC-CHHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            45679999999999999999998743     35789999986432 2234578999999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-----------------------------------------Cccccc---------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-----------------------------------------SIRPHI---------  142 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------------------~~~~~~---------  142 (218)
                      ..+++|||+++ +|.+++......                                         +++|.+         
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~  161 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVV  161 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeE
Confidence            99999999987 998888653210                                         112211         


Q ss_pred             --cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          143 --KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       143 --~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                        .++|                    ..|+|||.+ .+..++.++|||||||++|+|++ |..||...+.......+.
T Consensus       162 kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~  238 (280)
T cd05049         162 KIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI-MYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECIT  238 (280)
T ss_pred             EECCcccceecccCcceecCCCCcccceecChhhh-ccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence              1111                    238999954 45568999999999999999999 999998775555555444

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.90  E-value=1.1e-22  Score=163.51  Aligned_cols=138  Identities=26%  Similarity=0.370  Sum_probs=107.9

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-Ch
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DL  126 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L  126 (218)
                      ||+|+||.||++.++.+++.+|+|.+...... ....+.+..|+.+++.++|++++++.+++......+++|||+++ +|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            69999999999999999999999998754322 23345678899999999999999999999999999999999987 88


Q ss_pred             HHHhhhcc-----cC--------------------------Ccccc-----------cccc-----------------C-
Q 041487          127 GSFIRKHT-----IT--------------------------SIRPH-----------IKEV-----------------G-  146 (218)
Q Consensus       127 ~~~~~~~~-----~~--------------------------~~~~~-----------~~~~-----------------g-  146 (218)
                      .+++....     ..                          ++++.           +.++                 | 
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~  160 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGT  160 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCC
Confidence            77653211     00                          22221           1112                 2 


Q ss_pred             CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       161 ~~y~aPE~~-~~~~~~~~~DvwslG~il~el~~g~~pf~~~  200 (280)
T cd05608         161 PGFMAPELL-QGEEYDFSVDYFALGVTLYEMIAARGPFRAR  200 (280)
T ss_pred             cCccCHHHh-cCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            249999955 4556899999999999999999999999865

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.90  E-value=2.5e-22  Score=161.90  Aligned_cols=146  Identities=27%  Similarity=0.448  Sum_probs=115.1

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|+..+.||+|+||.||++.+..+++.+|+|.+....... .....+.+|+.+++.++|++++.+++.+..++..+++||
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEE
Confidence            3788899999999999999999999999999987543322 234567889999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC-----------------------------Cccc-----------cccccC-------------
Q 041487          121 YLDL-DLGSFIRKHTIT-----------------------------SIRP-----------HIKEVG-------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~-----------------------------~~~~-----------~~~~~g-------------  146 (218)
                      |+.+ +|.+++......                             ++++           .+.++|             
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  160 (285)
T cd05632          81 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRG  160 (285)
T ss_pred             eccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccC
Confidence            9987 787776432210                             1111           112222             


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ..|+|||.+ .+..++.++|+|||||++|++++|+.||....
T Consensus       161 ~~g~~~~~aPE~~-~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~  205 (285)
T cd05632         161 RVGTVGYMAPEVL-NNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRK  205 (285)
T ss_pred             CCCCcCccChHHh-cCCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence                349999965 45568999999999999999999999998763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.90  E-value=6.7e-23  Score=164.42  Aligned_cols=158  Identities=26%  Similarity=0.454  Sum_probs=121.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +..++|++.+.||+|++|.||+|.+..     .+..|++|.++.. ........+.+|+.+++.++|+||+++++++...
T Consensus         3 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (277)
T cd05036           3 VPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPES-CSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER   81 (277)
T ss_pred             CCHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCC-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            345779999999999999999999876     6788999987633 2222345688899999999999999999999988


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------------Cccc--------------ccc
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRP--------------HIK  143 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~--------------~~~  143 (218)
                      ...+++|||+.+ +|.+++......                                  ++++              ...
T Consensus        82 ~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~  161 (277)
T cd05036          82 LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIA  161 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEec
Confidence            899999999976 999887654210                                  1111              112


Q ss_pred             ccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          144 EVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       144 ~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                      ++|                    ..|+|||.+. +..++.++|||||||++|+|++ |..||+..+...+...+.
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~  235 (277)
T cd05036         162 DFGMARDIYRASYYRKGGRAMLPIKWMPPEAFL-DGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVT  235 (277)
T ss_pred             cCccccccCCccceecCCCCCccHhhCCHHHHh-cCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence            222                    1389999654 4558999999999999999997 999998876555555444

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.90  E-value=1.3e-22  Score=160.68  Aligned_cols=153  Identities=27%  Similarity=0.457  Sum_probs=119.5

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|+||.||++++..++..+++|.++... .....+.+.+|+.+++.++|+|++++++.+..+..++++|||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPK-SSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCc-chHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEee
Confidence            5889999999999999999999999999999986432 233456788899999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc---------------
Q 041487          122 LDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV---------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~---------------  145 (218)
                      +++ +|.+++......                             ++++.+           .++               
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~  159 (255)
T cd08219          80 CDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACT  159 (255)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccccccccc
Confidence            986 888877542211                             222211           111               


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                        | ..|+|||. ..+..++.++|+||||+++|+|++|+.||...+.......+
T Consensus       160 ~~~~~~~~aPE~-~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~  212 (255)
T cd08219         160 YVGTPYYVPPEI-WENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKV  212 (255)
T ss_pred             ccCCccccCHHH-HccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHH
Confidence              1 12899995 45555899999999999999999999999876544443333

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.90  E-value=1.4e-23  Score=171.80  Aligned_cols=144  Identities=24%  Similarity=0.415  Sum_probs=112.0

Q ss_pred             EEeeecCceEEEEEEE---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           47 EKIGQGVFGEVYKCLN---LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~---~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      +.||+|+||.||++.+   +.++..+|+|+++...........+.+|+.++++++||||+++++.+...+.+|+||||+.
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            6799999999999876   3578999999998654333445667889999999999999999999999999999999998


Q ss_pred             C-ChHHHhhhcccC---------------------------Ccccc-----------cccc-----------------C-
Q 041487          124 L-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV-----------------G-  146 (218)
Q Consensus       124 ~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------------g-  146 (218)
                      + +|.+++......                           ++++.           +.++                 | 
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~  161 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGT  161 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCC
Confidence            6 888887553221                           11111           1122                 2 


Q ss_pred             CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 ~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                      ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...
T Consensus       162 ~~y~aPE~~-~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~  205 (318)
T cd05582         162 VEYMAPEVV-NRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE  205 (318)
T ss_pred             hhhcCHHHH-cCCCCCCccceeccceEeeeeccCCCCCCCCCHHH
Confidence            239999954 44557899999999999999999999998765433

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.90  E-value=7.6e-23  Score=162.48  Aligned_cols=155  Identities=26%  Similarity=0.469  Sum_probs=119.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++.+.||+|++|.||+|.. ..+..+++|.+...   ....+.+.+|+.++++++|+|++++++.+......++
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~-~~~~~v~iK~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   78 (261)
T cd05072           3 IPRESIKLVKKLGAGQFGEVWMGYY-NNSTKVAVKTLKPG---TMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYI   78 (261)
T ss_pred             CchHHeEEeeecCCcCCceEEEEEe-cCCceEEEEEccCC---chhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEE
Confidence            5678899999999999999999986 45678999987632   2235788999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV-----------  145 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~-----------  145 (218)
                      +|||+.+ +|.+++......                             +++|.+           .++           
T Consensus        79 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  158 (261)
T cd05072          79 ITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY  158 (261)
T ss_pred             EEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCce
Confidence            9999976 998887653211                             122211           111           


Q ss_pred             --------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          146 --------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 --------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                              ...|+|||.+ ....++.++|||||||++|+|+| |+.||...........+.
T Consensus       159 ~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~  218 (261)
T cd05072         159 TAREGAKFPIKWTAPEAI-NFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQ  218 (261)
T ss_pred             eccCCCccceecCCHHHh-ccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHH
Confidence                    1249999954 45558889999999999999999 999998765444444333

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.90  E-value=2e-22  Score=162.07  Aligned_cols=147  Identities=37%  Similarity=0.682  Sum_probs=117.6

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|++|.||+|.++.+++.|++|.++.........+.+.+|+.++++++|+|++++++++..++..+++||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            46999999999999999999999899999999987655555566789999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Cccc-----------ccccc----------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRP-----------HIKEV----------------  145 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~-----------~~~~~----------------  145 (218)
                      |+++++.+.+......                            ++.+           .+.++                
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~  160 (288)
T cd07833          81 YVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTD  160 (288)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccC
Confidence            9998665543332111                            1111           01111                


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                         ...|+|||.+.....++.++||||||+++|++++|++||...
T Consensus       161 ~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  205 (288)
T cd07833         161 YVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD  205 (288)
T ss_pred             cccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence               123899997665546899999999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.90  E-value=1.5e-22  Score=163.62  Aligned_cols=149  Identities=22%  Similarity=0.404  Sum_probs=116.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .+.|++++.||.|+||.||+|++..++..+++|.+...  .....+.+.+|+.+++.++|+|++++++.+..++..++||
T Consensus        11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   88 (292)
T cd06644          11 NEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK--SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMI   88 (292)
T ss_pred             chhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEE
Confidence            46799999999999999999999999999999998643  3334677888999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-------------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------------  146 (218)
                      ||+++ +|..++......                            ++++.           +.++|             
T Consensus        89 e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~  168 (292)
T cd06644          89 EFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRD  168 (292)
T ss_pred             ecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccccccccc
Confidence            99987 666665432110                            22221           12222             


Q ss_pred             -----CcccCccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          147 -----SPYKAPESRI----RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       147 -----~~y~aPE~~~----~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                           ..|+|||.+.    ....++.++|||||||++|+|++|.+||...+..
T Consensus       169 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~  221 (292)
T cd06644         169 SFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM  221 (292)
T ss_pred             eecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHH
Confidence                 2389999654    2344788999999999999999999999876433

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.90  E-value=1.4e-22  Score=182.31  Aligned_cols=148  Identities=24%  Similarity=0.403  Sum_probs=118.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++..... ....+++.+|+.++++++|||++++++++.+.+..+++|
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            6799999999999999999999999999999998754322 234567899999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhccc--------------------------------------CCccccc-----------cc-----
Q 041487          120 EYLDL-DLGSFIRKHTI--------------------------------------TSIRPHI-----------KE-----  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~--------------------------------------~~~~~~~-----------~~-----  144 (218)
                      ||+++ +|.+++.....                                      .+++|.+           .+     
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcce
Confidence            99987 88887653100                                      0222211           01     


Q ss_pred             ------------------------------cC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          145 ------------------------------VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       145 ------------------------------~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                                                    .| ..|+|||. ..+..++.++|||||||++|+|+||+.||...+.
T Consensus       162 ~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~-l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~  236 (932)
T PRK13184        162 FKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPER-LLGVPASESTDIYALGVILYQMLTLSFPYRRKKG  236 (932)
T ss_pred             ecccccccccccccccccccccccccCCCCCCCCCCCCHHH-hcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcch
Confidence                                          12 24999995 4555689999999999999999999999987543

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.90  E-value=4e-24  Score=182.67  Aligned_cols=146  Identities=30%  Similarity=0.497  Sum_probs=119.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------CE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------RY  114 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~  114 (218)
                      ..+..-+.||+|+||.||+++++.+|+.||||.++... .....++.-+|++++++++|+|||+++++-.+.      ..
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~-~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~   91 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKES-SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRL   91 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhc-ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCccccc
Confidence            33455678999999999999999999999999997543 445678899999999999999999999997644      36


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC------------------------------Cccccc---------------ccc---
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT------------------------------SIRPHI---------------KEV---  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~------------------------------~~~~~~---------------~~~---  145 (218)
                      ..++||||.+ +|...+.+....                              |++|.+               .++   
T Consensus        92 ~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             ceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeeccccc
Confidence            8999999987 888888765443                              455543               122   


Q ss_pred             -------------CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -------------GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -------------g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                   |+. |++||...+.++|+.-+|.|||||++|+++||..||-..
T Consensus       172 rel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~  227 (732)
T KOG4250|consen  172 RELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPF  227 (732)
T ss_pred             ccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcC
Confidence                         222 999996555688999999999999999999999999755

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=5e-24  Score=182.05  Aligned_cols=139  Identities=29%  Similarity=0.502  Sum_probs=115.0

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-C
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-D  125 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~  125 (218)
                      -+||+|.||+||.|+++.+....|||.++..  ..+..+-+..|+.++++++|.|||++.+.+-.++.+-|.||-++| +
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpek--dsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGS  658 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEK--DSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGS  658 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccc--cchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCc
Confidence            4699999999999999999999999999743  445567899999999999999999999999999999999999988 9


Q ss_pred             hHHHhhhc-ccC-----------------------------Cc------------cccccccCCc---------------
Q 041487          126 LGSFIRKH-TIT-----------------------------SI------------RPHIKEVGSP---------------  148 (218)
Q Consensus       126 L~~~~~~~-~~~-----------------------------~~------------~~~~~~~g~~---------------  148 (218)
                      |...+... +..                             ++            -.++++||+.               
T Consensus       659 LSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTG  738 (1226)
T KOG4279|consen  659 LSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTG  738 (1226)
T ss_pred             HHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCcccccccc
Confidence            98887653 221                             11            1123455543               


Q ss_pred             ---ccCcccccCCCC-CCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          149 ---YKAPESRIRSSV-YSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       149 ---y~aPE~~~~~~~-~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                         |||||.+-++.. |+.++|||||||++.||+||++||.-.
T Consensus       739 TLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~El  781 (1226)
T KOG4279|consen  739 TLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVEL  781 (1226)
T ss_pred             chhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeec
Confidence               999996555533 999999999999999999999999754

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.90  E-value=1.7e-22  Score=162.27  Aligned_cols=138  Identities=27%  Similarity=0.374  Sum_probs=107.6

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-Ch
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DL  126 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L  126 (218)
                      ||+|+||.||++..+.+++.+|+|.+....... .....+..|++++++++||||+++++.+..+...+++|||+++ +|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999999999999999987543322 2234556799999999999999999999999999999999986 88


Q ss_pred             HHHhhhcccC-----------------------------Cccccc-----------ccc-----------------CCcc
Q 041487          127 GSFIRKHTIT-----------------------------SIRPHI-----------KEV-----------------GSPY  149 (218)
Q Consensus       127 ~~~~~~~~~~-----------------------------~~~~~~-----------~~~-----------------g~~y  149 (218)
                      .+++......                             +++|.+           .++                 ...|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y  160 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGY  160 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCc
Confidence            7776432211                             222211           111                 2349


Q ss_pred             cCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          150 KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       150 ~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      +|||.+. +..++.++||||+||++|+|++|+.||...
T Consensus       161 ~aPE~~~-~~~~~~~~DvwslGv~l~el~~g~~p~~~~  197 (277)
T cd05607         161 MAPEILK-EEPYSYPVDWFAMGCSIYEMVAGRTPFKDH  197 (277)
T ss_pred             cCHHHHc-cCCCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999654 445899999999999999999999999865

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.90  E-value=3.3e-22  Score=159.02  Aligned_cols=147  Identities=30%  Similarity=0.540  Sum_probs=117.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|++|.||+|....+++.+++|.++... ......+.+.+|+.++++++|++++++++.+...+..+++|
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            57999999999999999999998899999999987543 23344678999999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC-------------------------------Cccccc-----------ccc-----------
Q 041487          120 EYLDL-DLGSFIRKHTIT-------------------------------SIRPHI-----------KEV-----------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~-------------------------------~~~~~~-----------~~~-----------  145 (218)
                      ||+++ +|.+++......                               ++.|.+           .++           
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~  161 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCc
Confidence            99987 998887532110                               111111           111           


Q ss_pred             ------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                            + ..|.|||.+ .+..++.++|+|||||++|++++|+.||....
T Consensus       162 ~~~~~~~~~~y~apE~~-~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  210 (267)
T cd08224         162 AAHSLVGTPYYMSPERI-HENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  210 (267)
T ss_pred             ccceecCCccccCHHHh-ccCCCCchhcHHHHHHHHHHHHHCCCCcccCC
Confidence                  1 238899955 45558899999999999999999999997653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.90  E-value=1.1e-22  Score=163.25  Aligned_cols=151  Identities=23%  Similarity=0.428  Sum_probs=118.6

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ..|+.++.||.|+||.||+|.+..++..+|+|.++... .....+.+.+|+.+++.++|+|++++++.+......++|||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEE-AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccc-cHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEe
Confidence            35778899999999999999998899999999987542 23345788899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Cccccc-----------cccC----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEVG----------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g----------------  146 (218)
                      |+++ +|.+++......                          ++.+.+           .++|                
T Consensus        83 ~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06640          83 YLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             cCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCcccccccc
Confidence            9987 888887653321                          111111           1111                


Q ss_pred             --CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          147 --SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       147 --~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                        ..|.|||.+ .+..++.++|+|||||++|+|++|+.||...+.....
T Consensus       163 ~~~~y~apE~~-~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~  210 (277)
T cd06640         163 GTPFWMAPEVI-QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVL  210 (277)
T ss_pred             CcccccCHhHh-ccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHh
Confidence              238999954 4555899999999999999999999999876544333

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.90  E-value=1.1e-22  Score=167.29  Aligned_cols=139  Identities=22%  Similarity=0.383  Sum_probs=110.2

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|.+..+++.+|+|++++... .....+.+.+|+.++.++ .||+|+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            369999999999999999999999999986542 234466788999998888 699999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------cccc-----------------C-C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEV-----------------G-S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------------g-~  147 (218)
                       +|.+++......                           +++|.           +.++                 | .
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  160 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTP  160 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCc
Confidence             887776543221                           22221           1122                 2 2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                      .|+|||.+ .+..++.++|||||||++|+|++|+.||..
T Consensus       161 ~y~aPE~~-~~~~~~~~~DiwslGvil~ell~g~~pf~~  198 (327)
T cd05617         161 NYIAPEIL-RGEEYGFSVDWWALGVLMFEMMAGRSPFDI  198 (327)
T ss_pred             ccCCHHHH-CCCCCCchheeehhHHHHHHHHhCCCCCCc
Confidence            38999954 456689999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.90  E-value=1.4e-22  Score=162.73  Aligned_cols=145  Identities=50%  Similarity=0.866  Sum_probs=118.3

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      |++.+.||.|++|.||+|.++.++..||+|.+............+.+|+.+++.++|+|++++++++...+..+++|||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            67889999999999999999889999999999765544455567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhhcc--c-C--------------------------Ccccc-----------cccc-----------------
Q 041487          123 DLDLGSFIRKHT--I-T--------------------------SIRPH-----------IKEV-----------------  145 (218)
Q Consensus       123 ~~~L~~~~~~~~--~-~--------------------------~~~~~-----------~~~~-----------------  145 (218)
                      +++|.+++....  . .                          ++.+.           ..++                 
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~  160 (283)
T cd07835          81 DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEV  160 (283)
T ss_pred             CcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccc
Confidence            889998876544  1 0                          11111           1111                 


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                       ...|+|||.+.....++.++|+||||+++|+|++|+.||...
T Consensus       161 ~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  203 (283)
T cd07835         161 VTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGD  203 (283)
T ss_pred             cccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence             223899997666566789999999999999999999999866

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.90  E-value=8.6e-23  Score=167.74  Aligned_cols=143  Identities=20%  Similarity=0.325  Sum_probs=114.3

Q ss_pred             EEEEeeec--CceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           45 VVEKIGQG--VFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        45 ~~~~ig~G--~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      ++++||+|  +|++||++.++.+++.||+|.++.........+.+.+|+.+++.++||||+++++++..++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            56789999  7899999999999999999998765444455667888999999999999999999999999999999999


Q ss_pred             CC-ChHHHhhhcccC-----------------------------Cccccc-----------cc-----------------
Q 041487          123 DL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KE-----------------  144 (218)
Q Consensus       123 ~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~-----------------  144 (218)
                      ++ +|.+++..+...                             ++++.+           .+                 
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~  161 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVV  161 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhcccccccccccc
Confidence            86 888887543211                             222211           00                 


Q ss_pred             --------cCCcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 --------VGSPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 --------~g~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ....|+|||.+... ..++.++|||||||++|+|++|+.||...
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         162 HDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             ccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence                    11238999976543 45889999999999999999999999865

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.90  E-value=2.4e-22  Score=159.06  Aligned_cols=150  Identities=30%  Similarity=0.506  Sum_probs=118.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|+||.+|++.+..+++.+++|.+............+.+|+.++++++|+|++++++.+...+..++++||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            58999999999999999999988999999999875444444456788999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC-----------------------------Cccc-----------ccccc---------------
Q 041487          122 LDL-DLGSFIRKHTIT-----------------------------SIRP-----------HIKEV---------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~-----------------------------~~~~-----------~~~~~---------------  145 (218)
                      +.+ +|.+++......                             ++++           .+.++               
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~  160 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELART  160 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhh
Confidence            986 888887653210                             1111           11111               


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                        | ..|+|||.+ .+..++.++|+|||||+++++++|+.||...+....
T Consensus       161 ~~~~~~~~~pe~~-~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~  209 (256)
T cd08218         161 CIGTPYYLSPEIC-ENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNL  209 (256)
T ss_pred             ccCCccccCHHHh-CCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHH
Confidence              1 238899954 455588899999999999999999999986644333

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=3.8e-22  Score=158.26  Aligned_cols=146  Identities=27%  Similarity=0.442  Sum_probs=117.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||.|++|.||+|.+..++..+++|.+.....  ...+.+.+|+.+++.++|||++++++.+.....++++||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG--DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch--hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            679999999999999999999988899999999975432  246789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhc-ccC---------------------------Ccccc-----------ccccC--------------
Q 041487          121 YLDL-DLGSFIRKH-TIT---------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~-~~~---------------------------~~~~~-----------~~~~g--------------  146 (218)
                      |+++ +|.+++... ...                           ++++.           +.++|              
T Consensus        81 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~  160 (262)
T cd06613          81 YCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKS  160 (262)
T ss_pred             CCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhhcccc
Confidence            9987 888877654 111                           12221           12221              


Q ss_pred             ----CcccCcccccCC--CCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ----SPYKAPESRIRS--SVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ----~~y~aPE~~~~~--~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ..|+|||.+...  ..++.++|+||||+++|+|++|+.||....
T Consensus       161 ~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~  208 (262)
T cd06613         161 FIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH  208 (262)
T ss_pred             ccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence                138999965433  257889999999999999999999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.90  E-value=7.1e-23  Score=164.52  Aligned_cols=159  Identities=26%  Similarity=0.451  Sum_probs=121.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCC-----cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETG-----KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~-----~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +..++|++.+.||+|+||.||+|.....+     ..+++|.+... ........+.+|+.+++.++||||+++++++...
T Consensus         2 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~-~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~   80 (283)
T cd05048           2 IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKEN-AEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE   80 (283)
T ss_pred             CChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccC-CCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC
Confidence            34568999999999999999999876544     67999988633 2233456788999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC-------------------------------------------Ccccc-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRPH-------  141 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~~-------  141 (218)
                      ...+++|||+++ +|.+++......                                           +++|.       
T Consensus        81 ~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~  160 (283)
T cd05048          81 QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEG  160 (283)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCC
Confidence            999999999986 998888653110                                           22221       


Q ss_pred             ----ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          142 ----IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       142 ----~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                          +.++|                    ..|+|||.+. +..++.++|||||||++|+|++ |..||.+.....+...+
T Consensus       161 ~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i  239 (283)
T cd05048         161 LTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAIL-YGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMI  239 (283)
T ss_pred             CcEEECCCcceeeccccccccccCCCcccccccCHHHhc-cCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence                12222                    2399999654 4458999999999999999998 99999887655555544


Q ss_pred             HH
Q 041487          197 RY  198 (218)
Q Consensus       197 ~~  198 (218)
                      ..
T Consensus       240 ~~  241 (283)
T cd05048         240 RS  241 (283)
T ss_pred             Hc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.90  E-value=6.8e-23  Score=168.95  Aligned_cols=94  Identities=22%  Similarity=0.408  Sum_probs=76.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~  111 (218)
                      +..++|++.+.||+|+||.||+|.+.     ..+..||+|.++.. ......+.+.+|+.++..+ +||||+++++++..
T Consensus         4 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~   82 (338)
T cd05102           4 FPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEG-ATASEHKALMSELKILIHIGNHLNVVNLLGACTK   82 (338)
T ss_pred             cchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccc-cchHHHHHHHHHHHHHHHhccCcceeeEEeEecC
Confidence            44578999999999999999999752     34568999998643 2233456788999999999 89999999998864


Q ss_pred             -CCEEEEEEecCCC-ChHHHhhh
Q 041487          112 -GRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus       112 -~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                       ...++++|||+++ +|.+++..
T Consensus        83 ~~~~~~lv~ey~~~g~L~~~l~~  105 (338)
T cd05102          83 PNGPLMVIVEFCKYGNLSNFLRA  105 (338)
T ss_pred             CCCceEEEEecCCCCcHHHHHHh
Confidence             4568999999987 99888764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.90  E-value=4.1e-24  Score=184.18  Aligned_cols=181  Identities=25%  Similarity=0.397  Sum_probs=141.9

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCC---cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETG---KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~---~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      -..+++..+.+|.++||.|.||.|++|+.+..+   ..||||.++.. ..+.+...|+.|+.+|.+++||||+++.++-.
T Consensus       622 FakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~G-ytekqrrdFL~EAsIMGQFdHPNIIrLEGVVT  700 (996)
T KOG0196|consen  622 FAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAG-YTEKQRRDFLSEASIMGQFDHPNIIRLEGVVT  700 (996)
T ss_pred             hhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccC-ccHHHHhhhhhhhhhcccCCCCcEEEEEEEEe
Confidence            345678888999999999999999999987555   57999999854 34556788999999999999999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC---------------------------------------CccccccccCC---
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------------------SIRPHIKEVGS---  147 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------------~~~~~~~~~g~---  147 (218)
                      ....+.||+|||+. +|+.|++.+-..                                       ...-++++||.   
T Consensus       701 ks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRv  780 (996)
T KOG0196|consen  701 KSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  780 (996)
T ss_pred             cCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceee
Confidence            99999999999976 999998875332                                       11112344443   


Q ss_pred             ------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCC-CCcchHHHHHHHhcccCcccc
Q 041487          148 ------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPC-GKKDHLSLIVRYFTALTNYLV  207 (218)
Q Consensus       148 ------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~-~~~~~~~~~~~~~~~~~~~~~  207 (218)
                                        .|.|||. +....++.++||||+|+++||.++ |..||=. .+.+.+..+.+...-|++-.=
T Consensus       781 ledd~~~~ytt~GGKIPiRWTAPEA-Ia~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDC  859 (996)
T KOG0196|consen  781 LEDDPEAAYTTLGGKIPIRWTAPEA-IAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDC  859 (996)
T ss_pred             cccCCCccccccCCccceeecChhH-hhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCC
Confidence                              2999995 556669999999999999999999 9888754 488888888887665555444


Q ss_pred             hhhhhhhcc
Q 041487          208 LPCFLSIML  216 (218)
Q Consensus       208 ~~~~~~~~l  216 (218)
                      +......||
T Consensus       860 P~aL~qLMl  868 (996)
T KOG0196|consen  860 PAALYQLML  868 (996)
T ss_pred             cHHHHHHHH
Confidence            444455554

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.90  E-value=6.7e-22  Score=160.30  Aligned_cols=147  Identities=29%  Similarity=0.565  Sum_probs=117.8

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..+|++.+.||+|++|.||+|.+..++..+++|.+.....  ...+.+.+|+.+++.+.|+|++++++.+......++||
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~--~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~   96 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc--chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEee
Confidence            4579999999999999999999988999999999875432  23467889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC--------------------------Cccc-----------cccccC---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT--------------------------SIRP-----------HIKEVG---------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~--------------------------~~~~-----------~~~~~g---------------  146 (218)
                      ||+++ +|.+++......                          +++|           .+.++|               
T Consensus        97 e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  176 (296)
T cd06654          97 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM  176 (296)
T ss_pred             cccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcc
Confidence            99987 898887643211                          1111           112222               


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                         ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+.
T Consensus       177 ~~~~~y~aPE~~-~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~  221 (296)
T cd06654         177 VGTPYWMAPEVV-TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP  221 (296)
T ss_pred             cCCccccCHHHH-cCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH
Confidence               248999954 455578999999999999999999999987643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.89  E-value=1.5e-22  Score=162.71  Aligned_cols=159  Identities=28%  Similarity=0.432  Sum_probs=120.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +..++|++.+.||+|+||.||+|...    ..+..+++|.++... .......+.+|+.++++++||||+++++++....
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   80 (283)
T cd05090           2 LPLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN-NPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ   80 (283)
T ss_pred             CChhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC-CHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC
Confidence            34578999999999999999999853    356789999987432 2333467889999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhccc--------------------------------------------CCcccc-------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTI--------------------------------------------TSIRPH-------  141 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~--------------------------------------------~~~~~~-------  141 (218)
                      ..|++|||+++ +|.+++.....                                            .+++|.       
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~  160 (283)
T cd05090          81 PVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQ  160 (283)
T ss_pred             ceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCC
Confidence            99999999987 89888742210                                            012221       


Q ss_pred             ----ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          142 ----IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       142 ----~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                          ..++|                    ..|+|||.+. +..++.++|||||||++|+|++ |..||.+.....+...+
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~  239 (283)
T cd05090         161 LHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIM-YGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMV  239 (283)
T ss_pred             CcEEeccccccccccCCcceecccCCCccceecChHHhc-cCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence                12222                    1399999554 4558999999999999999999 99999876555555544


Q ss_pred             HH
Q 041487          197 RY  198 (218)
Q Consensus       197 ~~  198 (218)
                      ..
T Consensus       240 ~~  241 (283)
T cd05090         240 RK  241 (283)
T ss_pred             Hc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.89  E-value=7.8e-24  Score=178.18  Aligned_cols=155  Identities=21%  Similarity=0.356  Sum_probs=128.6

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ...+++..+...+...||+|+||+||+|.+   ...||||.+.......+..+.|..|+.++++-+|.||+-+-+++...
T Consensus       384 ~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~w---hGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  384 LEEWEIPPEEVLLGERIGSGSFGTVYRGRW---HGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             ccccccCHHHhhccceeccccccceeeccc---ccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            356667777888999999999999999985   56799999998877778899999999999999999999999999877


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------------------CccccccccCCc----
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------------------SIRPHIKEVGSP----  148 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------------~~~~~~~~~g~~----  148 (218)
                      .. .||+-+|++ +|+.++.-....                                       +.+.++.+||..    
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~  539 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKT  539 (678)
T ss_pred             ce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeee
Confidence            66 999999998 898887654332                                       244455666654    


Q ss_pred             ----------------ccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          149 ----------------YKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       149 ----------------y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                                      |||||++..  ..+|+..+||||||+++|||+||.+||.....+.
T Consensus       540 ~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dq  600 (678)
T KOG0193|consen  540 RWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQ  600 (678)
T ss_pred             eeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhh
Confidence                            999996433  4669999999999999999999999999664443

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.89  E-value=2.6e-22  Score=160.94  Aligned_cols=145  Identities=36%  Similarity=0.619  Sum_probs=113.2

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC--CEEEEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG--RYVYLVF  119 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~--~~~~lv~  119 (218)
                      |++.+.||+|+||.||+|++..++..+|+|.++....... .....+|+.+++++ +|+|++++++++.+.  +.++++|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~-~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLE-QVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCch-hhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEE
Confidence            6789999999999999999998999999999875432222 23345788888888 599999999999877  8999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Ccccc----------cccc----------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRPH----------IKEV----------------  145 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~~----------~~~~----------------  145 (218)
                      ||+++++.+++......                            ++++.          +.++                
T Consensus        80 e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~~~~kl~dfg~~~~~~~~~~~~~~~  159 (282)
T cd07831          80 ELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKDDILKLADFGSCRGIYSKPPYTEYI  159 (282)
T ss_pred             ecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcCCCeEEEecccccccccCCCcCCCC
Confidence            99998888887653211                            11111          1111                


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                       ...|+|||.+..++.++.++|||||||++|+|++|+.||++.+
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~  203 (282)
T cd07831         160 STRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTN  203 (282)
T ss_pred             CCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCC
Confidence             1238999976666668899999999999999999999998764

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=1.3e-22  Score=163.38  Aligned_cols=149  Identities=22%  Similarity=0.419  Sum_probs=118.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++++.||+|+||.||++.+..++..+|+|++.... .......+.+|+++++.++||||+++++.+......++
T Consensus         2 l~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   80 (284)
T cd06620           2 LRNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA-KSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICM   80 (284)
T ss_pred             ccHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC-cchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEE
Confidence            44678999999999999999999998899999999987432 33446788999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC----------------------------Cccc-----------ccccc------------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT----------------------------SIRP-----------HIKEV------------  145 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~----------------------------~~~~-----------~~~~~------------  145 (218)
                      ||||+++ +|.+++......                            ++++           .+.++            
T Consensus        81 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~  160 (284)
T cd06620          81 CMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIAD  160 (284)
T ss_pred             EEecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhccC
Confidence            9999987 887776543211                            1111           11122            


Q ss_pred             ----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ...|+|||.+. +..++.++|||||||++|++++|+.||....
T Consensus       161 ~~~~~~~~~aPE~~~-~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~  206 (284)
T cd06620         161 TFVGTSTYMSPERIQ-GGKYTVKSDVWSLGISIIELALGKFPFAFSN  206 (284)
T ss_pred             ccccCcccCCHHHHc-cCCCCccchHHHHHHHHHHHHhCCCCCcccc
Confidence                22489999654 4468899999999999999999999998653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.89  E-value=3e-22  Score=163.24  Aligned_cols=149  Identities=21%  Similarity=0.413  Sum_probs=118.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|+||.||++.+..++..+|+|.+.... .......+.+|+.++++++||||+++++.+..++.++++||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   79 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI-KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICME   79 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEee
Confidence            46999999999999999999999999999999986432 22344568899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC----------------------------Cccc-----------cccccC--------------
Q 041487          121 YLDL-DLGSFIRKHTIT----------------------------SIRP-----------HIKEVG--------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~----------------------------~~~~-----------~~~~~g--------------  146 (218)
                      |+++ +|.+++......                            ++++           .+.++|              
T Consensus        80 y~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  159 (308)
T cd06615          80 HMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV  159 (308)
T ss_pred             ccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccccccccCC
Confidence            9987 898887543211                            1111           112222              


Q ss_pred             --CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 --SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 --~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                        ..|+|||. ..+..++.++|+|||||++|++++|+.||...+...
T Consensus       160 ~~~~~~aPE~-~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~  205 (308)
T cd06615         160 GTRSYMSPER-LQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKE  205 (308)
T ss_pred             CCcCccChhH-hcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhh
Confidence              24999995 455568899999999999999999999997654333

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.2e-23  Score=166.97  Aligned_cols=183  Identities=20%  Similarity=0.320  Sum_probs=137.2

Q ss_pred             CChhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeee
Q 041487           30 NGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLD  107 (218)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~  107 (218)
                      ++......+...+|.++.+||+|+|++|.++..+++.+.+|+|+++++. ...++.+....|..+.... +||.+|.++.
T Consensus       239 ~g~~~~~~l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhs  318 (593)
T KOG0695|consen  239 DGIKISQGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHS  318 (593)
T ss_pred             cccccccccccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhh
Confidence            3334556677889999999999999999999999999999999999876 4556678888888888887 7999999999


Q ss_pred             eEEeCCEEEEEEecCCC-ChHHHhhhcccC--------------------------------------------------
Q 041487          108 VLTTGRYVYLVFEYLDL-DLGSFIRKHTIT--------------------------------------------------  136 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~--------------------------------------------------  136 (218)
                      +|+....+++|.||+++ +|--.++.+...                                                  
T Consensus       319 cfqtesrlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmc  398 (593)
T KOG0695|consen  319 CFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMC  398 (593)
T ss_pred             hhcccceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchh
Confidence            99999999999999975 443333322111                                                  


Q ss_pred             -----CccccccccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC---CcchHHHHHHHhcccCcccc
Q 041487          137 -----SIRPHIKEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG---KKDHLSLIVRYFTALTNYLV  207 (218)
Q Consensus       137 -----~~~~~~~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~---~~~~~~~~~~~~~~~~~~~~  207 (218)
                           ........+|++ |.||| +.++..|+.++|.|+||++++||+.|+.||+-.   +++...............++
T Consensus       399 ke~l~~gd~tstfcgtpnyiape-ilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqir  477 (593)
T KOG0695|consen  399 KEGLGPGDTTSTFCGTPNYIAPE-ILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIR  477 (593)
T ss_pred             hcCCCCCcccccccCCCcccchh-hhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhccc
Confidence                 111112345655 99999 677878999999999999999999999999732   44444333333333344555


Q ss_pred             hhhhhh
Q 041487          208 LPCFLS  213 (218)
Q Consensus       208 ~~~~~~  213 (218)
                      +|+.+|
T Consensus       478 iprsls  483 (593)
T KOG0695|consen  478 IPRSLS  483 (593)
T ss_pred             ccceee
Confidence            555544

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.89  E-value=2.4e-22  Score=163.56  Aligned_cols=149  Identities=24%  Similarity=0.384  Sum_probs=117.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..|.+.+.||+|+||.||+|+...+++.|++|.+.... ......+.+.+|+.+++.++|||++++++++......++|+
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            45899999999999999999998899999999986433 22334467889999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+.+++.+++......                            ++.+.           +.++|              
T Consensus        95 e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~  174 (307)
T cd06607          95 EYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGT  174 (307)
T ss_pred             HhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCCCCccCC
Confidence            99998887776532111                            12221           12222              


Q ss_pred             CcccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 SPYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 ~~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                      ..|+|||.+..  ...++.++||||||+++|++++|+.||...+.
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~  219 (307)
T cd06607         175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA  219 (307)
T ss_pred             ccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccH
Confidence            23899996642  35588899999999999999999999987643

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.89  E-value=6.8e-24  Score=177.74  Aligned_cols=138  Identities=22%  Similarity=0.352  Sum_probs=107.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +-.+...-++=||.|+-|.||+|+.  .++.||||.++         +.-..++.-|++++||||+.+.++|.....+||
T Consensus       121 iPFe~IsELeWlGSGaQGAVF~Grl--~netVAVKKV~---------elkETdIKHLRkLkH~NII~FkGVCtqsPcyCI  189 (904)
T KOG4721|consen  121 IPFEEISELEWLGSGAQGAVFLGRL--HNETVAVKKVR---------ELKETDIKHLRKLKHPNIITFKGVCTQSPCYCI  189 (904)
T ss_pred             CCHHHhhhhhhhccCcccceeeeec--cCceehhHHHh---------hhhhhhHHHHHhccCcceeeEeeeecCCceeEE
Confidence            3334444567799999999999986  88999999764         222356777999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC--------------------------------------CccccccccCC-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT--------------------------------------SIRPHIKEVGS-----------  147 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~--------------------------------------~~~~~~~~~g~-----------  147 (218)
                      |||||.. .|...++.....                                      +-..++.+||+           
T Consensus       190 iMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkM  269 (904)
T KOG4721|consen  190 IMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKM  269 (904)
T ss_pred             eeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhhhhhh
Confidence            9999975 666666553322                                      11122344444           


Q ss_pred             ------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 ------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 ------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                            +||||| ++.+.+.+.++||||||||||||+||..||-..
T Consensus       270 SFaGTVaWMAPE-vIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV  314 (904)
T KOG4721|consen  270 SFAGTVAWMAPE-VIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV  314 (904)
T ss_pred             hhhhhHhhhCHH-HhhcCCcccccceehhHHHHHHHHhcCCCcccc
Confidence                  399999 788888999999999999999999999999643

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=2.3e-23  Score=176.25  Aligned_cols=172  Identities=22%  Similarity=0.353  Sum_probs=139.7

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ..++++..+.....+||-|-||.||.|..++....||||.++.   +....+.|+.|+.+|+.++|||+|+++++|....
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKE---DtMeveEFLkEAAvMKeikHpNLVqLLGVCT~Ep  336 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEP  336 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhh---cchhHHHHHHHHHHHHhhcCccHHHHhhhhccCC
Confidence            4556777778889999999999999999999999999999873   4455789999999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccCC----------------------------------------ccccccccCCc----
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTITS----------------------------------------IRPHIKEVGSP----  148 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~~----------------------------------------~~~~~~~~g~~----  148 (218)
                      .+|||+|||.- .|.||++.+....                                        .-.++.+||..    
T Consensus       337 PFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMt  416 (1157)
T KOG4278|consen  337 PFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMT  416 (1157)
T ss_pred             CeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhc
Confidence            99999999975 9999998765431                                        11122344432    


Q ss_pred             ---------------ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchh
Q 041487          149 ---------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       149 ---------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                     |.|||-+. .+.++.++|||+|||+|||++| |--||++.+......+.+....+..+-..|
T Consensus       417 gDTYTAHAGAKFPIKWTAPEsLA-yNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCP  492 (1157)
T KOG4278|consen  417 GDTYTAHAGAKFPIKWTAPESLA-YNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCP  492 (1157)
T ss_pred             CCceecccCccCcccccCccccc-ccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCC
Confidence                           99999654 5558999999999999999999 999999988777777666655554444443

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.89  E-value=2.4e-22  Score=160.09  Aligned_cols=147  Identities=25%  Similarity=0.444  Sum_probs=115.3

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++.+.||+|+||.||+|++..++..+|+|.+....  ......+.+|+.+++.++|||++++++.+......+++
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~--~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv   84 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEP--GDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWIC   84 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCc--cchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEE
Confidence            3467999999999999999999998899999999986432  23345688999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccc-----------ccccc--------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEV--------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~--------------  145 (218)
                      |||+++ +|.+++......                           ++++           .+.++              
T Consensus        85 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~  164 (267)
T cd06646          85 MEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRK  164 (267)
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecccccccC
Confidence            999987 888877543221                           1111           11111              


Q ss_pred             ---C-CcccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ---G-SPYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ---g-~~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                         | ..|+|||.+.  ....++.++|+|||||++|+|++|+.||...
T Consensus       165 ~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~  212 (267)
T cd06646         165 SFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             ccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence               1 2389999653  2344778999999999999999999999654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.89  E-value=6.2e-22  Score=159.03  Aligned_cols=146  Identities=46%  Similarity=0.821  Sum_probs=118.0

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||.|++|.||+|++..++..||+|.++.... ....+.+.+|+.+++.++|+|++++++.+...+..+++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAE-EGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEY   79 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEeccccc-ccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEec
Confidence            58999999999999999999988999999999875432 23346677899999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC------------------------------Cccccc-----------ccc---------------
Q 041487          122 LDLDLGSFIRKHTIT------------------------------SIRPHI-----------KEV---------------  145 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~------------------------------~~~~~~-----------~~~---------------  145 (218)
                      ++++|.+++......                              ++++.+           .++               
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~  159 (284)
T cd07836          80 MDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSN  159 (284)
T ss_pred             CCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcccccc
Confidence            999998887654310                              111111           111               


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                         ...|++||.+.....++.++|||||||++|++++|+.||...+
T Consensus       160 ~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~  205 (284)
T cd07836         160 EVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTN  205 (284)
T ss_pred             ccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence               1238999976666667899999999999999999999998764

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.89  E-value=1.1e-22  Score=161.04  Aligned_cols=145  Identities=35%  Similarity=0.645  Sum_probs=117.9

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      |++.+.||+|+||.||++.+..+++.+|+|.+..............+|+.++++++||||+++++++......+++||++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            78999999999999999999999999999999865433333344556999999999999999999999999999999999


Q ss_pred             CC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-----------------
Q 041487          123 DL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-----------------  146 (218)
Q Consensus       123 ~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-----------------  146 (218)
                      .+ +|.+++......                           +++|.+           .++|                 
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~  160 (260)
T PF00069_consen   81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVG  160 (260)
T ss_dssp             TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99 999988733221                           233322           1122                 


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                       ..|.|||.+..+..++.++||||+|+++|+|++|..||...
T Consensus       161 ~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  161 TPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             SGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence             12899996543677899999999999999999999999976

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.89  E-value=2.9e-22  Score=159.24  Aligned_cols=155  Identities=24%  Similarity=0.432  Sum_probs=119.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++.+.||+|++|.||+|... .+..||+|.++...   ...+.+.+|+.++++++|+|++++++++...+..++
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~v~iK~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   78 (261)
T cd05068           3 IDRTSIQLLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGT---MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYI   78 (261)
T ss_pred             cchhheeeEEEecccCCccEEEEEec-CCeEEEEEeeCCCc---ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeee
Confidence            45678999999999999999999864 45789999986432   234678899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +|||+.+ +|.+++......                             ++++.+           .++|          
T Consensus        79 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~  158 (261)
T cd05068          79 VTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIY  158 (261)
T ss_pred             eeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcc
Confidence            9999965 999988654310                             222221           1211          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                               ..|+|||. ..+..++.++||||||+++|+++| |+.||.+.+...+...+.
T Consensus       159 ~~~~~~~~~~~y~aPE~-~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~  218 (261)
T cd05068         159 EAREGAKFPIKWTAPEA-ALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVD  218 (261)
T ss_pred             cccCCCcCceeccCccc-cccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence                     13899994 455668999999999999999999 999998875554444433

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.89  E-value=4.3e-22  Score=160.87  Aligned_cols=147  Identities=46%  Similarity=0.790  Sum_probs=116.5

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCE-----
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRY-----  114 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~-----  114 (218)
                      ++|++.+.||+|+||.||+|.+..++..||+|.++...........+.+|+.+++.+ .|+|++++++++.....     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            469999999999999999999999999999999876544444556788899999999 46999999999876555     


Q ss_pred             EEEEEecCCCChHHHhhhccc------C--------------------------Cccc------------cccccC----
Q 041487          115 VYLVFEYLDLDLGSFIRKHTI------T--------------------------SIRP------------HIKEVG----  146 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~------~--------------------------~~~~------------~~~~~g----  146 (218)
                      .|++|||++++|.+++.....      .                          ++++            ...++|    
T Consensus        81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~  160 (295)
T cd07837          81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRA  160 (295)
T ss_pred             EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeeccccee
Confidence            899999999999888754311      0                          1111            112222    


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                    ..|+|||.+.....++.++||||||+++|+|++|..||.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~  215 (295)
T cd07837         161 FSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGD  215 (295)
T ss_pred             cCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCC
Confidence                          23899997766566889999999999999999999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.89  E-value=1.3e-22  Score=160.28  Aligned_cols=149  Identities=28%  Similarity=0.470  Sum_probs=114.5

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-C
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-D  125 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~  125 (218)
                      +.||+|+||.||+|.++.++..+|+|.+... ........+.+|+.+++.++||||+++++++......++||||+.+ +
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRET-LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCcc-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            3689999999999999889999999987643 2333456789999999999999999999999999999999999977 8


Q ss_pred             hHHHhhhcccC----------------------------Ccccc-----------ccccC--------------------
Q 041487          126 LGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------------  146 (218)
Q Consensus       126 L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------------  146 (218)
                      |.+++......                            +++|.           ..++|                    
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  159 (252)
T cd05084          80 FLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIP  159 (252)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCc
Confidence            98887653211                            12221           12222                    


Q ss_pred             CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                      ..|+|||.+ .+..++.++|||||||++|++++ |..||...........+.
T Consensus       160 ~~y~aPE~~-~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~  210 (252)
T cd05084         160 VKWTAPEAL-NYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIE  210 (252)
T ss_pred             eeecCchhh-cCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHH
Confidence            138999954 55558999999999999999998 899997665444444333

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.89  E-value=1.6e-22  Score=164.54  Aligned_cols=157  Identities=29%  Similarity=0.414  Sum_probs=119.5

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcE--EEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGR  113 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~--vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~  113 (218)
                      .+..++|++.+.||+|+||.||+|.++.++..  +++|.++.. ........+.+|+.++.++ +|+||+++++++..++
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~   81 (303)
T cd05088           3 VLEWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   81 (303)
T ss_pred             ccchhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEeccc-CCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC
Confidence            45678899999999999999999998777654  566765422 2333456788899999999 8999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-------------------------------------------Ccccc--------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRPH--------  141 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~~--------  141 (218)
                      .++++|||+++ +|.+++......                                           +++|.        
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~  161 (303)
T cd05088          82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  161 (303)
T ss_pred             CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCC
Confidence            99999999976 898888643210                                           12221        


Q ss_pred             ---ccccC-----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHH
Q 041487          142 ---IKEVG-----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLI  195 (218)
Q Consensus       142 ---~~~~g-----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~  195 (218)
                         +.++|                 ..|+|||.+ .+..++.++|||||||++|+++| |..||...+.......
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~  235 (303)
T cd05088         162 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL-NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEK  235 (303)
T ss_pred             cEEeCccccCcccchhhhcccCCCcccccCHHHH-hccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHH
Confidence               12222                 239999954 55568899999999999999998 9999987655544443

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.89  E-value=1.5e-22  Score=162.79  Aligned_cols=147  Identities=34%  Similarity=0.643  Sum_probs=115.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|+||.||+|.+..+++.+|+|.+..........+.+.+|+.+++.++|||++++++++......++++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            46899999999999999999998889999999987554444456678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc----------------
Q 041487          121 YLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~----------------  145 (218)
                      |+++ .|.++.......                           ++.+.           ..++                
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~  160 (286)
T cd07846          81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDY  160 (286)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcc
Confidence            9987 444443322110                           11111           1111                


Q ss_pred             --CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                        ...|+|||.+.....++.++||||||+++|+|++|++||+..
T Consensus       161 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~  204 (286)
T cd07846         161 VATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGD  204 (286)
T ss_pred             cceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCC
Confidence              123899997765556788999999999999999999999765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.89  E-value=1.2e-21  Score=158.90  Aligned_cols=146  Identities=32%  Similarity=0.592  Sum_probs=116.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .+|++.+.||.|++|.||+|.+..+++.+++|.+....  ....+.+.+|+.+++.++|+|++++++.+......++++|
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQK--QPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVME   96 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEeccc--CchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEE
Confidence            56999999999999999999998999999999987432  2335678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Ccccc-----------ccccC----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEVG----------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g----------------  146 (218)
                      |+++ +|.+++......                          ++++.           +.++|                
T Consensus        97 ~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~  176 (296)
T cd06655          97 YLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMV  176 (296)
T ss_pred             ecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcC
Confidence            9987 887776553221                          11111           11221                


Q ss_pred             --CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 --SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 --~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                        ..|+|||.+ ....++.++|||||||++|++++|+.||...+.
T Consensus       177 ~~~~y~aPE~~-~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~  220 (296)
T cd06655         177 GTPYWMAPEVV-TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (296)
T ss_pred             CCccccCcchh-cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence              238999954 445588999999999999999999999987643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.89  E-value=2.3e-22  Score=161.23  Aligned_cols=159  Identities=25%  Similarity=0.442  Sum_probs=119.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +..++|++.+.||+|+||.||+|.++.     .+..+|+|.+.... .......+.+|+.+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~-~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~   81 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG   81 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            456789999999999999999998642     35679999875322 222345688999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC-------------------------------------Ccccc-----------cc
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------SIRPH-----------IK  143 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------~~~~~-----------~~  143 (218)
                      ...+++|||+++ +|.+++......                                     +++|.           ..
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~  161 (277)
T cd05062          82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIG  161 (277)
T ss_pred             CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEEC
Confidence            999999999987 898887642110                                     11111           12


Q ss_pred             ccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          144 EVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       144 ~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                      ++|                    ..|+|||.+ .+..++.++|||||||++|+|++ |..||...........+..
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~  236 (277)
T cd05062         162 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESL-KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVME  236 (277)
T ss_pred             CCCCccccCCcceeecCCCCccCHhhcChhHh-hcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHc
Confidence            222                    139999954 45568999999999999999999 7899987765555444433

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.89  E-value=1.9e-22  Score=160.97  Aligned_cols=157  Identities=26%  Similarity=0.400  Sum_probs=119.3

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCc---EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~---~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      ...+|++.+.||+|+||.||+|..+.++.   .|++|.+.... .......+..|+.+++.++||||+++++++..+...
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   80 (269)
T cd05065           2 DVSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY-TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPV   80 (269)
T ss_pred             ChHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCce
Confidence            34679999999999999999999876554   69999986432 233456889999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---------  146 (218)
                      +++|||+++ +|.+++......                            ++++.+           .++|         
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~  160 (269)
T cd05065          81 MIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT  160 (269)
T ss_pred             EEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCc
Confidence            999999987 888887653211                            122211           1111         


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                    ..|+|||.+ .+..++.++|||||||++||+++ |..||...+.......+.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~  225 (269)
T cd05065         161 SDPTYTSSLGGKIPIRWTAPEAI-AYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIE  225 (269)
T ss_pred             cccccccccCCCcceeecCHhHh-ccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence                          138999954 45568999999999999999987 999998765444444433

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.89  E-value=3.1e-22  Score=160.68  Aligned_cols=146  Identities=24%  Similarity=0.455  Sum_probs=110.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHH-HhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSL-LKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~-l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||++.++.++..||+|.++....... ...+..|+.+ ++..+|||++++++.+..++.++++|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~   79 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQE-QKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICM   79 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHH-HHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEh
Confidence            479999999999999999999999999999999875433332 3345555554 66679999999999999999999999


Q ss_pred             ecCCCChHHHhhhcccC--------------------------------Ccccc-----------ccccC----------
Q 041487          120 EYLDLDLGSFIRKHTIT--------------------------------SIRPH-----------IKEVG----------  146 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~--------------------------------~~~~~-----------~~~~g----------  146 (218)
                      ||++++|.+++......                                ++++.           +.++|          
T Consensus        80 e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~  159 (283)
T cd06617          80 EVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA  159 (283)
T ss_pred             hhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccccccc
Confidence            99998887776542100                                11111           11221          


Q ss_pred             -------CcccCcccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -------SPYKAPESRIRS---SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -------~~y~aPE~~~~~---~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                             ..|+|||.+...   ..++.++|+|||||++|+|++|+.||...
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (283)
T cd06617         160 KTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSW  210 (283)
T ss_pred             cccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCcc
Confidence                   238999965432   34688999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.89  E-value=4.3e-22  Score=161.82  Aligned_cols=150  Identities=34%  Similarity=0.693  Sum_probs=116.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--------
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--------  111 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--------  111 (218)
                      .++|++.+.||+|++|.||+|.++.+++.+++|.+............+.+|+.+++.++|+||+++++++..        
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            578999999999999999999999999999999997654444444567789999999999999999998753        


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC----------------------------Ccccc-----------cccc-------
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV-------  145 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~-------  145 (218)
                      ...++++|||+..++.+++......                            ++++.           ..++       
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  166 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYD  166 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence            3357999999988777665432111                            11111           1111       


Q ss_pred             ----------------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 ----------------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 ----------------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                                            ...|+|||.+.....++.++|||||||++|+|++|++||.+.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~  232 (311)
T cd07866         167 GPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSD  232 (311)
T ss_pred             CCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCH
Confidence                                  11289999766666689999999999999999999999987643

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.89  E-value=3.7e-22  Score=159.04  Aligned_cols=156  Identities=24%  Similarity=0.392  Sum_probs=118.9

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      ..++|++.+.||+|+||.||+|..+..   ...+|+|.++... .......+.+|+.+++.++||||+++++.+......
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           2 DPSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS-SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             ChHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC-ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            457899999999999999999987643   4579999886432 233456788899999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---------  146 (218)
                      +++|||+++ +|.+++......                            +++|.+           .++|         
T Consensus        81 ~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~  160 (266)
T cd05033          81 MIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE  160 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccc
Confidence            999999987 899887653211                            222211           1111         


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                                 ..|+|||.+ .+..++.++||||||+++|++++ |..||.......+...+
T Consensus       161 ~~~~~~~~~~~~~y~~Pe~~-~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~  221 (266)
T cd05033         161 ATYTTKGGKIPIRWTAPEAI-AYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAV  221 (266)
T ss_pred             cceeccCCCCCccccChhhh-ccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Confidence                       238999954 45558999999999999999998 99999766544444433

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.89  E-value=5e-22  Score=157.68  Aligned_cols=152  Identities=25%  Similarity=0.454  Sum_probs=118.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++.+.||+|++|.||+|... .+..+++|.+....   ...+.+.+|+.+++.++|+|++++++++......++
T Consensus         3 ~~~~~~~i~~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   78 (261)
T cd05034           3 IPRESLKLERKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGT---MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYI   78 (261)
T ss_pred             cchhheeeeeeeccCcceEEEEEEEc-CCceEEEEEecCCc---cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEE
Confidence            56788999999999999999999864 56789999886432   234678899999999999999999999998899999


Q ss_pred             EEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +|||+++ +|.+++......                             ++++.+           .++|          
T Consensus        79 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~  158 (261)
T cd05034          79 VTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEY  158 (261)
T ss_pred             EEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhh
Confidence            9999987 898888653211                             122211           1221          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~  194 (218)
                               ..|+|||.+ .+..++.++|+||||+++|++++ |+.||.+.+......
T Consensus       159 ~~~~~~~~~~~y~~PE~~-~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~  215 (261)
T cd05034         159 TAREGAKFPIKWTAPEAA-NYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLE  215 (261)
T ss_pred             hhhhccCCCccccCHHHh-ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence                     248999954 45568999999999999999999 999998775444333

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.89  E-value=5.1e-22  Score=160.96  Aligned_cols=150  Identities=33%  Similarity=0.663  Sum_probs=117.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-----
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-----  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----  113 (218)
                      ..++|++.+.||+|++|.||+|.++.++..||+|.++...........+.+|+.++++++|||++++++++....     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            457899999999999999999999989999999999765444445567788999999999999999999986544     


Q ss_pred             -----EEEEEEecCCCChHHHhhhcccC----------------------------Ccccc-----------cccc----
Q 041487          114 -----YVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV----  145 (218)
Q Consensus       114 -----~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~----  145 (218)
                           .+++++||+++++.+++......                            ++++.           +.++    
T Consensus        85 ~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~  164 (302)
T cd07864          85 KKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLAR  164 (302)
T ss_pred             cccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccc
Confidence                 79999999998877776543110                            11111           1111    


Q ss_pred             ---------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ---------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ---------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                     ...|+|||.+.....++.++|||||||++|+|++|++||...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~  222 (302)
T cd07864         165 LYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ  222 (302)
T ss_pred             cccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence                           1238999966555557899999999999999999999998663

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.89  E-value=2.1e-22  Score=160.59  Aligned_cols=152  Identities=27%  Similarity=0.439  Sum_probs=116.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCC---cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETG---KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~---~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      ..++|++.+.||+|+||.||+|..+.++   ..+|+|.++... .....+.+.+|+.++++++||||+++++++..++..
T Consensus         2 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (267)
T cd05066           2 DASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY-TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV   80 (267)
T ss_pred             CHHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            4578999999999999999999876443   379999886432 223356788999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG---------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g---------  146 (218)
                      +++|||+++ +|.+++......                            +++|.           ..++|         
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd05066          81 MIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  160 (267)
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCccccccccc
Confidence            999999986 898888654211                            11111           11111         


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchH
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHL  192 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~  192 (218)
                                  ..|+|||.+ .+..++.++|+|||||++|++++ |..||........
T Consensus       161 ~~~~~~~~~~~~~~y~~pe~~-~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~  218 (267)
T cd05066         161 EAAYTTRGGKIPIRWTAPEAI-AYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDV  218 (267)
T ss_pred             ceeeecCCCccceeecCHhHh-ccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHH
Confidence                        138999954 45558999999999999999887 9999987644433

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.89  E-value=7.9e-23  Score=162.72  Aligned_cols=166  Identities=23%  Similarity=0.391  Sum_probs=118.0

Q ss_pred             eEEEEeeecCceEEEEEEEc----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           44 KVVEKIGQGVFGEVYKCLNL----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++.+.||.|+||.||+|...    ..+..|+||.++.. ......+.+.+|+..+++++||||+++++++...+..++|+
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~-~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS-SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT-SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc-cccccceeeeecccccccccccccccccccccccccccccc
Confidence            56789999999999999987    34678999998532 22234678999999999999999999999999888899999


Q ss_pred             ecCCC-ChHHHhhhcccC-----------------------------Cc-----------ccccccc-------------
Q 041487          120 EYLDL-DLGSFIRKHTIT-----------------------------SI-----------RPHIKEV-------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~-----------------------------~~-----------~~~~~~~-------------  145 (218)
                      ||++. +|.+++......                             ++           ..++.++             
T Consensus        81 e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~  160 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYK  160 (259)
T ss_dssp             E--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99986 999999886111                             11           1111111             


Q ss_pred             -------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchhhh
Q 041487          146 -------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLPCF  211 (218)
Q Consensus       146 -------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (218)
                             ...|+|||.+. +..++.++||||||+++||+++ |+.||...+...+...+.....++.+...|..
T Consensus       161 ~~~~~~~~~~~~aPE~~~-~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (259)
T PF07714_consen  161 NDSSQQLPLRYLAPEVLK-DGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPIPDNCPKD  233 (259)
T ss_dssp             ESTTSESGGGGS-HHHHH-HSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTSBTTSBHH
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeccchhHH
Confidence                   12399999544 4448999999999999999999 78999877555544444443443333333333

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=3.9e-22  Score=159.73  Aligned_cols=147  Identities=28%  Similarity=0.545  Sum_probs=116.8

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC---CCCeeeeeeeEEeCCEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE---HDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .|++.+.||+|+||.||+|.+..++..+++|.++... .....+.+.+|+.+++.+.   |||++++++++......+++
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv   80 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDT-PDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWII   80 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCC-CchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEE
Confidence            4788899999999999999998899999999987432 3334567888999999986   99999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC--------------------------Ccccc-----------cccc---------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~---------------  145 (218)
                      |||+++ +|.+++......                          ++.+.           ..++               
T Consensus        81 ~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~  160 (277)
T cd06917          81 MEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRST  160 (277)
T ss_pred             EecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcccccc
Confidence            999987 888887654321                          11111           1112               


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                        | ..|+|||.+..+..++.++|+|||||++|+|++|+.||...+.
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~  207 (277)
T cd06917         161 FVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDA  207 (277)
T ss_pred             ccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCCh
Confidence              1 1389999776666678999999999999999999999986643

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.89  E-value=3.4e-22  Score=159.37  Aligned_cols=158  Identities=23%  Similarity=0.427  Sum_probs=119.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCc---EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~---~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      +..++|+..+.||+|++|.||+|....++.   .+++|.++... .....+.+.+|+.+++.++|+|++++.+++...+.
T Consensus         2 i~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (268)
T cd05063           2 IHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGY-TEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKP   80 (268)
T ss_pred             CChHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccC-CHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCC
Confidence            446789999999999999999999865544   78999886432 22335678899999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------  146 (218)
                      .+++|||+++ +|.+++......                            ++++.           ..++|        
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~  160 (268)
T cd05063          81 AMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDD  160 (268)
T ss_pred             cEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecccc
Confidence            9999999987 888887653211                            11111           11221        


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                   ..|+|||.+ ....++.++|||||||++|++++ |+.||...+.......+.
T Consensus       161 ~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~  224 (268)
T cd05063         161 PEGTYTTSGGKIPIRWTAPEAI-AYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAIN  224 (268)
T ss_pred             cccceeccCCCcCceecCHHHh-hcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHh
Confidence                         138999954 44558999999999999999998 999998765544444443

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.89  E-value=6.6e-22  Score=158.76  Aligned_cols=147  Identities=38%  Similarity=0.744  Sum_probs=118.4

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CEEEEEEe
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RYVYLVFE  120 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~E  120 (218)
                      |++.+.||.|++|.||+|....++..+|+|.++.........+.+.+|+.+++.++|+|++++++++...  +..++++|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            6789999999999999999988899999999986654445567788999999999999999999999877  89999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Ccccc-----------ccc-----------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKE-----------------  144 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~-----------------  144 (218)
                      |++++|.+++......                            ++++.           +.+                 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~  160 (287)
T cd07840          81 YMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTN  160 (287)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccc
Confidence            9998888877554111                            11111           111                 


Q ss_pred             --cCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          145 --VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       145 --~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                        ....|+|||.+.....++.++||||||+++|+|++|+.||...+.
T Consensus       161 ~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~  207 (287)
T cd07840         161 RVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTE  207 (287)
T ss_pred             cccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence              123389999766555688999999999999999999999987643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.89  E-value=3e-22  Score=158.96  Aligned_cols=149  Identities=27%  Similarity=0.409  Sum_probs=114.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ...+|++.+.||+|+||.||.+... .+..+|+|.++....   ..+.+.+|+.++++++||||+++++++......+++
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~-~~~~~aik~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   77 (256)
T cd05113           2 DPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM---SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIV   77 (256)
T ss_pred             ChHHeEEeeEecCcccceEEEEEec-CCCcEEEEEcCCCcc---cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEE
Confidence            3567999999999999999999764 345699998764322   246788999999999999999999999988899999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG------------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g------------  146 (218)
                      |||+.+ +|.+++......                            ++++.           +.++|            
T Consensus        78 ~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~  157 (256)
T cd05113          78 TEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTS  157 (256)
T ss_pred             EEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCceee
Confidence            999976 888887653211                            11111           11111            


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHL  192 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~  192 (218)
                             ..|++||.+ .+..++.++|||||||++|+|++ |+.||...+....
T Consensus       158 ~~~~~~~~~y~~pe~~-~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~  210 (256)
T cd05113         158 SVGSKFPVRWSPPEVL-LYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSET  210 (256)
T ss_pred             cCCCccChhhCCHHHH-hcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHH
Confidence                   238999954 44558899999999999999999 9999987654433

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.89  E-value=7e-22  Score=158.51  Aligned_cols=151  Identities=23%  Similarity=0.436  Sum_probs=116.9

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      -|++.+.||.|+||.||+|.+..++..+|+|.+.... .....+.+.+|+.++++++|||++++++.+..+...++||||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE-AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEecccc-chHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEe
Confidence            4788899999999999999988889999999876432 223456788999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC--------------------------Ccccc-----------cccc-----------------C
Q 041487          122 LDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEV-----------------G  146 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~-----------------g  146 (218)
                      +++ +|.+++......                          ++++.           +.++                 +
T Consensus        84 ~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  163 (277)
T cd06641          84 LGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVG  163 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccC
Confidence            987 888877543221                          11111           1122                 1


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                       ..|+|||.+. ...++.++|+|||||++|++++|..||..........
T Consensus       164 ~~~y~~PE~~~-~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~  211 (277)
T cd06641         164 TPFWMAPEVIK-QSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLF  211 (277)
T ss_pred             CccccChhhhc-cCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHH
Confidence             2378999544 4557889999999999999999999998765443333

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.89  E-value=2.7e-22  Score=159.02  Aligned_cols=152  Identities=26%  Similarity=0.372  Sum_probs=116.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..+|++.+.||+|+||.||++.++ .+..+|+|.+.....   ....+.+|+.+++.++|+||+++++++...+..+++|
T Consensus         3 ~~~~~~~~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd05059           3 PSELTFLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAM---SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVT   78 (256)
T ss_pred             hHHcchhhhhccCCCceEEEeEec-CCccEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEE
Confidence            456899999999999999999875 567899998864322   2356888999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-------------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------------  146 (218)
                      ||+++ +|.+++......                            +++|.           +.++|             
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~  158 (256)
T cd05059          79 EYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSS  158 (256)
T ss_pred             ecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceeccccccccc
Confidence            99976 899887643211                            11111           11221             


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                            ..|+|||.+ .+..++.++||||||+++|++++ |+.||...+.......+
T Consensus       159 ~~~~~~~~y~~Pe~~-~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~  214 (256)
T cd05059         159 QGTKFPVKWAPPEVF-DYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESV  214 (256)
T ss_pred             CCCCCCccccCHHHh-ccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Confidence                  139999954 45558999999999999999999 89999876544444433

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.89  E-value=2.8e-22  Score=160.43  Aligned_cols=159  Identities=27%  Similarity=0.445  Sum_probs=121.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccC-----CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLET-----GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +..++|++.+.||+|+||.||+|..+..     +..+|+|.+.... .......+.+|+.+++.++|+|++++++++...
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   81 (277)
T cd05032           3 LPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVSTG   81 (277)
T ss_pred             cchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc-CHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCC
Confidence            5567899999999999999999987643     4789999975332 223345788999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC-------------------------------------Cccccc-----------c
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------SIRPHI-----------K  143 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------~~~~~~-----------~  143 (218)
                      ...+++|||+++ +|.+++......                                     +++|.+           .
T Consensus        82 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~  161 (277)
T cd05032          82 QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIG  161 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEEC
Confidence            999999999975 998887542110                                     122211           1


Q ss_pred             ccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          144 EVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       144 ~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                      ++|                    ..|+|||.+. ...++.++|||||||++|+++| |+.||...+.......+..
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~  236 (277)
T cd05032         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLK-DGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVID  236 (277)
T ss_pred             CcccchhhccCcccccCCCCCccccccCHHHHh-cCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhc
Confidence            222                    2389999654 4458999999999999999998 9999987766665555553

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.89  E-value=2.9e-22  Score=159.66  Aligned_cols=146  Identities=24%  Similarity=0.422  Sum_probs=115.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|++..++..+|+|.++...  ......+.+|+.+++.++|||++++++.+...+..+++|
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~   85 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP--GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICM   85 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc--hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEE
Confidence            457899999999999999999998899999999987542  223456788999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+++ +|.+++......                           ++++.           +.++|              
T Consensus        86 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~  165 (267)
T cd06645          86 EFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKS  165 (267)
T ss_pred             eccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCccccccc
Confidence            99987 888877543321                           11111           11222              


Q ss_pred             ----CcccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----SPYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----~~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                          ..|+|||.+.  ....++.++|+|||||++|+|++|+.||...
T Consensus       166 ~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~  212 (267)
T cd06645         166 FIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             ccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccc
Confidence                2389999653  2445788999999999999999999999655

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.89  E-value=5.7e-23  Score=179.18  Aligned_cols=179  Identities=23%  Similarity=0.321  Sum_probs=131.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeee-EE----
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDV-LT----  110 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~-~~----  110 (218)
                      .+...+.++.+.|.+|+|+.||+|++...+..+|+|.+-..  +....+.+.+|+++|+.| .|+|||.+++. ..    
T Consensus        33 ~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~--de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~  110 (738)
T KOG1989|consen   33 TVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN--DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSS  110 (738)
T ss_pred             EECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC--CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccC
Confidence            35566788999999999999999999888899999987643  566788999999999999 49999999993 22    


Q ss_pred             -e-CCEEEEEEecCCC-ChHHHhhhcccC-------------------------------Cccccc-----------ccc
Q 041487          111 -T-GRYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------SIRPHI-----------KEV  145 (218)
Q Consensus       111 -~-~~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------~~~~~~-----------~~~  145 (218)
                       . ..++.|+||||.+ +|.||+......                               |++.++           =+|
T Consensus       111 ~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDF  190 (738)
T KOG1989|consen  111 NNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDF  190 (738)
T ss_pred             CCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcc
Confidence             2 3579999999995 999999754222                               111111           123


Q ss_pred             CCc---------------------------ccCccc--ccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHH
Q 041487          146 GSP---------------------------YKAPES--RIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLI  195 (218)
Q Consensus       146 g~~---------------------------y~aPE~--~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~  195 (218)
                      |++                           |.|||.  +..+...+.++|||+|||+||.|+-...||+.. ....+.-.
T Consensus       191 GSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~  270 (738)
T KOG1989|consen  191 GSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGN  270 (738)
T ss_pred             cccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEecc
Confidence            322                           999995  344677999999999999999999999999876 33333333


Q ss_pred             HHHhcccCcccchhhhhhhccc
Q 041487          196 VRYFTALTNYLVLPCFLSIMLL  217 (218)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~l~  217 (218)
                      ......+..+-.+-+++..||.
T Consensus       271 Y~~P~~p~ys~~l~~LI~~mL~  292 (738)
T KOG1989|consen  271 YSFPPFPNYSDRLKDLIRTMLQ  292 (738)
T ss_pred             ccCCCCccHHHHHHHHHHHHhc
Confidence            3322223334555555666653

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.89  E-value=5.5e-22  Score=160.53  Aligned_cols=147  Identities=35%  Similarity=0.657  Sum_probs=118.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC---CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP---EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      +|++.+.||+|++|.||+|.+..+++.|++|.++.....   ......+..|+.++++++|+|++++++++.....+++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            488999999999999999999888999999999765433   33456677899999999999999999999999999999


Q ss_pred             EecCCCChHHHhhhcc-cC---------------------------Cccccc-----------ccc--------------
Q 041487          119 FEYLDLDLGSFIRKHT-IT---------------------------SIRPHI-----------KEV--------------  145 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~-~~---------------------------~~~~~~-----------~~~--------------  145 (218)
                      |||+.++|.+++.... ..                           ++++.+           .++              
T Consensus        81 ~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~  160 (298)
T cd07841          81 FEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMT  160 (298)
T ss_pred             EcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCcccc
Confidence            9999769999886654 11                           122111           111              


Q ss_pred             ----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ...|+|||.+.....++.++|||||||++|++++|.+||....
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~  207 (298)
T cd07841         161 HQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS  207 (298)
T ss_pred             ccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc
Confidence                1238999976555668899999999999999999988888663

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PTZ00284 protein kinase; Provisional

Probab=99.89  E-value=4.5e-22  Score=171.05  Aligned_cols=160  Identities=20%  Similarity=0.399  Sum_probs=116.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC------CCeeeeeeeEEe-
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH------DNIVRLLDVLTT-  111 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h------~~iv~~~~~~~~-  111 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||||+++...   ........|+.++..+.|      .+++++++++.. 
T Consensus       127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~  203 (467)
T PTZ00284        127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP---KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNE  203 (467)
T ss_pred             CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch---hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcC
Confidence            3578999999999999999999999999999999986321   223345567766666644      458888888864 


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC----------------------------Cccc-----------------------
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRP-----------------------  140 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~-----------------------  140 (218)
                      ....++|||++.++|.+++......                            +++|                       
T Consensus       204 ~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~  283 (467)
T PTZ00284        204 TGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPD  283 (467)
T ss_pred             CceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCC
Confidence            4579999999988888776543211                            1221                       


Q ss_pred             ----cccccC---------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhc
Q 041487          141 ----HIKEVG---------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFT  200 (218)
Q Consensus       141 ----~~~~~g---------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~  200 (218)
                          ++.++|               ..|+|||.+ .+..++.++|||||||++|||++|++||.+.+ .+.+..+.+.++
T Consensus       284 ~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~-~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g  362 (467)
T PTZ00284        284 PCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVV-LGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLG  362 (467)
T ss_pred             CceEEECCCCccccCccccccccCCccccCcHHh-hcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcC
Confidence                223333               249999965 45568999999999999999999999998763 344455555444


Q ss_pred             cc
Q 041487          201 AL  202 (218)
Q Consensus       201 ~~  202 (218)
                      .+
T Consensus       363 ~~  364 (467)
T PTZ00284        363 RL  364 (467)
T ss_pred             CC
Confidence            43

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.89  E-value=4.7e-22  Score=165.02  Aligned_cols=149  Identities=32%  Similarity=0.505  Sum_probs=116.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ...+|++.+.||+|+||.||+|.+..++..+|+|.+............+.+|+.++++++|+|++++++++...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            46789999999999999999999999999999999875444444556778899999999999999999988643      


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC-------------------------Ccccc-----------cccc-----------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT-------------------------SIRPH-----------IKEV-----------  145 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~-------------------------~~~~~-----------~~~~-----------  145 (218)
                      ...|+||||+.++|.+++......                         +++|.           ..++           
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  173 (353)
T cd07850          94 QDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  173 (353)
T ss_pred             CcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCC
Confidence            357999999998888776432110                         22221           1111           


Q ss_pred             ------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                            ...|+|||.+ .+..++.++|||||||++|+|++|+.||...+
T Consensus       174 ~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~  221 (353)
T cd07850         174 MTPYVVTRYYRAPEVI-LGMGYKENVDIWSVGCIMGEMIRGTVLFPGTD  221 (353)
T ss_pred             CCCCcccccccCHHHH-hCCCCCCchhhHhHHHHHHHHHHCCCCCCCCC
Confidence                  1238999954 45568999999999999999999999998763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.89  E-value=1.1e-21  Score=155.92  Aligned_cols=148  Identities=26%  Similarity=0.411  Sum_probs=118.7

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||.|++|.||+|....++..+++|.+....... ..+.+.+|+.+++.++|+|++++++.+......+++||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   79 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT-SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMP   79 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch-HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEe
Confidence            47999999999999999999988889999999986543333 56789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhccc----C--------------------------Ccccc-----------ccc--------------
Q 041487          121 YLDL-DLGSFIRKHTI----T--------------------------SIRPH-----------IKE--------------  144 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~----~--------------------------~~~~~-----------~~~--------------  144 (218)
                      ++++ +|.+++.....    .                          ++.+.           ..+              
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~  159 (267)
T cd06610          80 YLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRT  159 (267)
T ss_pred             ccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcccc
Confidence            9987 88888765322    0                          11111           011              


Q ss_pred             -------cC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          145 -------VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       145 -------~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                             .| ..|+|||.+.....++.++|+|||||++|+|++|+.||...+.
T Consensus       160 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~  212 (267)
T cd06610         160 RKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP  212 (267)
T ss_pred             ccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh
Confidence                   12 2389999766655689999999999999999999999986643

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=5.8e-22  Score=161.86  Aligned_cols=149  Identities=23%  Similarity=0.413  Sum_probs=118.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .+|++.+.||+|++|.||+|.+..++..+|+|.+....... ...+.+.+|+.+++.++|++|+++++.+......+++|
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            36999999999999999999998899999999997654332 35667889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cc--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KE--------------  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~--------------  144 (218)
                      ||+.+ +|.+++......                             ++++.+           .+              
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~  160 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPV  160 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccccccccc
Confidence            99987 888887643211                             122111           11              


Q ss_pred             --------------------------------cC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          145 --------------------------------VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       145 --------------------------------~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                                                      .| ..|+|||.+. +..++.++||||||+++|+|++|+.||.+.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~  238 (316)
T cd05574         161 SKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVIS-GDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRD  238 (316)
T ss_pred             ccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHc-CCCCCchHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence                                            11 2389999654 455789999999999999999999999877443

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.2e-21  Score=155.95  Aligned_cols=146  Identities=27%  Similarity=0.517  Sum_probs=113.7

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC---CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--CCEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE---PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--GRYV  115 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~  115 (218)
                      .+|++.+.||+|++|.||+|.+..++..+++|.+.....   .......+.+|+.++++++|+||+++++.+..  ...+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            579999999999999999999999999999998864321   22345678899999999999999999999865  4578


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccc-----------ccccc-----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEV-----------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~-----------  145 (218)
                      ++++||+++ +|.+++......                           ++++           .+.++           
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  161 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICM  161 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccccc
Confidence            999999986 888887653221                           1111           11111           


Q ss_pred             ---------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ---------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ---------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               + ..|+|||.+. +..++.++|+|||||++|++++|+.||...
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         162 SGTGIKSVTGTPYWMSPEVIS-GEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             cCccccccCCcccccCHhhhc-CCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence                     1 2389999544 455789999999999999999999999765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.89  E-value=5.5e-22  Score=156.91  Aligned_cols=147  Identities=27%  Similarity=0.507  Sum_probs=117.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|+||.||++..+.++..+|+|.+..........+.+.+|+.+++.++|+|++++++.+......++++||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            58899999999999999999999999999999976544444556788999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC-----------------------------Cccc------------ccccc--------------
Q 041487          122 LDL-DLGSFIRKHTIT-----------------------------SIRP------------HIKEV--------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~-----------------------------~~~~------------~~~~~--------------  145 (218)
                      +++ +|.+++......                             ++++            ...++              
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~  160 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAY  160 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCccccc
Confidence            977 888887543211                             1111            11111              


Q ss_pred             ---C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          146 ---G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       146 ---g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                         | ..|+|||.+ ....++.++|+||||+++|++++|+.||...+.
T Consensus       161 ~~~~~~~~~ape~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  207 (257)
T cd08225         161 TCVGTPYYLSPEIC-QNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL  207 (257)
T ss_pred             ccCCCccccCHHHH-cCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH
Confidence               1 138899954 444588999999999999999999999987643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.89  E-value=9.1e-22  Score=161.86  Aligned_cols=150  Identities=34%  Similarity=0.580  Sum_probs=119.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-CCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-GRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~l  117 (218)
                      ..++|++.+.||+|+||.||+|.+..++..+|+|.+.+........+.+.+|+.+++.++|||++++++++.. ....++
T Consensus         8 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~l   87 (328)
T cd07856           8 ITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYF   87 (328)
T ss_pred             cccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEE
Confidence            4678999999999999999999999999999999987554444556778899999999999999999999865 567999


Q ss_pred             EEecCCCChHHHhhhcccC--------------------------Ccccc-----------ccccC--------------
Q 041487          118 VFEYLDLDLGSFIRKHTIT--------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ++||++++|.+++......                          ++++.           ..++|              
T Consensus        88 v~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~  167 (328)
T cd07856          88 VTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVS  167 (328)
T ss_pred             EeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCCCcCCCcc
Confidence            9999988887776542211                          11111           11111              


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                       ..|+|||.+.....++.++|||||||++|++++|+.||...+
T Consensus       168 ~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~  210 (328)
T cd07856         168 TRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKD  210 (328)
T ss_pred             cccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence             238999976555668999999999999999999999998764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.89  E-value=8.3e-23  Score=163.81  Aligned_cols=149  Identities=25%  Similarity=0.450  Sum_probs=115.8

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +-|+..+.||+|+||.||+|.+..++..||+|.++... .....+.+.+|+.++++++|||++++++.+..+...++|||
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEE-AEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEecccc-chHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEE
Confidence            34677788999999999999998889999999986442 22345678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Ccccc-----------cccc-----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEV-----------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~-----------------  145 (218)
                      |+++ +|.+++......                          ++.+.           ..++                 
T Consensus        83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06642          83 YLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             ccCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhhccc
Confidence            9987 887776543221                          11111           1111                 


Q ss_pred             C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          146 G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       146 g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                      + ..|+|||.+ .+..++.++|+|||||++|++++|+.||.......
T Consensus       163 ~~~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  208 (277)
T cd06642         163 GTPFWMAPEVI-KQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR  208 (277)
T ss_pred             CcccccCHHHh-CcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh
Confidence            1 238999954 45558899999999999999999999997654333

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.89  E-value=5e-22  Score=160.50  Aligned_cols=148  Identities=34%  Similarity=0.652  Sum_probs=118.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RYVYL  117 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~l  117 (218)
                      .++|++.+.||.|++|.||+|.++.++..+++|.++...........+.+|+.++++++||||+++++++...  ...++
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~l   83 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYM   83 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEE
Confidence            3579999999999999999999988999999999986544444455677899999999999999999998877  89999


Q ss_pred             EEecCCCChHHHhhhcccC----------------------------Ccccc-----------cccc-------------
Q 041487          118 VFEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~-------------  145 (218)
                      +|||++++|.+++......                            ++++.           ..++             
T Consensus        84 v~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~  163 (293)
T cd07843          84 VMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPY  163 (293)
T ss_pred             EehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCcccc
Confidence            9999998888877653221                            11111           1111             


Q ss_pred             -----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                           +..|+|||.+.....++.++|+||||+++|+|++|..||...
T Consensus       164 ~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~  210 (293)
T cd07843         164 TQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGK  210 (293)
T ss_pred             ccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                 223899997665555789999999999999999999999866

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.89  E-value=6.3e-22  Score=157.81  Aligned_cols=146  Identities=27%  Similarity=0.527  Sum_probs=114.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC---CCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--CCEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP---EGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--GRYV  115 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~  115 (218)
                      .+|+..+.||+|+||.||+|.+..++..+++|.++.....   ....+.+.+|+.+++.++||||+++++++..  ...+
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            4789999999999999999999889999999998754322   2334578889999999999999999998865  4679


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccc-----------cccccC----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEVG----------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~g----------  146 (218)
                      ++++||+++ +|.+++......                           ++++           ...++|          
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~  161 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICM  161 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccc
Confidence            999999986 888887653221                           1111           111221          


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                 ..|+|||.+ .+..++.++|||||||++|++++|+.||...
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~  212 (266)
T cd06651         162 SGTGIRSVTGTPYWMSPEVI-SGEGYGRKADVWSLGCTVVEMLTEKPPWAEY  212 (266)
T ss_pred             cCCccccCCccccccCHHHh-CCCCCCchhhhHHHHHHHHHHHHCCCCcccc
Confidence                       238999955 4555889999999999999999999999865

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-22  Score=167.25  Aligned_cols=159  Identities=25%  Similarity=0.361  Sum_probs=119.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC------------CCCchHHHHHHHHHHhhCCCCCeeeee
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE------------PEGVPSYLIAGVSLLKELEHDNIVRLL  106 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~------------~~~~~~~~~~e~~~l~~l~h~~iv~~~  106 (218)
                      ..+.|++++.||+|.||.|-+|.+..++..||||++.+...            ...-.+...+|+.+|+++.|||||+++
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            45779999999999999999999999999999999975421            112246889999999999999999999


Q ss_pred             eeEEe--CCEEEEEEecCCCCh--------------------------HHHhhhccc--CCccccc-----------ccc
Q 041487          107 DVLTT--GRYVYLVFEYLDLDL--------------------------GSFIRKHTI--TSIRPHI-----------KEV  145 (218)
Q Consensus       107 ~~~~~--~~~~~lv~E~~~~~L--------------------------~~~~~~~~~--~~~~~~~-----------~~~  145 (218)
                      ++..+  ...+|+|+|||...-                          ..|+..++.  .+|+|.+           .+|
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDF  254 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDF  254 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeecc
Confidence            99864  467999999995211                          122233322  2444432           222


Q ss_pred             ----------------------C-CcccCcccccCCC---CCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          146 ----------------------G-SPYKAPESRIRSS---VYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 ----------------------g-~~y~aPE~~~~~~---~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                            | .+|+|||.+..+.   ..+.+.||||+||+||-++-|+.||.+.....++..+.
T Consensus       255 GVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIv  332 (576)
T KOG0585|consen  255 GVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIV  332 (576)
T ss_pred             ceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHh
Confidence                                  3 2399999777633   35678999999999999999999999875555555444

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.89  E-value=1.8e-22  Score=168.99  Aligned_cols=95  Identities=31%  Similarity=0.460  Sum_probs=79.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT  110 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~  110 (218)
                      .+..++|++.+.||+|+||.||+|.+..     ++..||+|.++... .....+.+.+|+.+++.+ +|+||+++++.+.
T Consensus        34 ~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~  112 (374)
T cd05106          34 EFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASA-HTDEREALMSELKILSHLGQHKNIVNLLGACT  112 (374)
T ss_pred             cccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCC-CHHHHHHHHHHHHHHHhhccCCceeeEeeEec
Confidence            4567789999999999999999998643     34579999987543 223456788999999999 8999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhh
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                      ..+..+++|||+++ +|.+++..
T Consensus       113 ~~~~~~lv~ey~~~g~L~~~l~~  135 (374)
T cd05106         113 HGGPVLVITEYCCYGDLLNFLRK  135 (374)
T ss_pred             CCCCeEEeHhhccCCcHHHHHHh
Confidence            99999999999987 88888753

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.89  E-value=7.2e-22  Score=160.20  Aligned_cols=146  Identities=31%  Similarity=0.573  Sum_probs=117.1

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..+|++.+.||+|++|.||++.+..+++.||+|.+....  ....+.+.+|+.+++.++|+|++++++.+......++||
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   95 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQ--QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   95 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCc--cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEee
Confidence            477999999999999999999998899999999987433  233467889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC--------------------------Cccc-----------cccccC---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT--------------------------SIRP-----------HIKEVG---------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~--------------------------~~~~-----------~~~~~g---------------  146 (218)
                      ||+++ +|.+++......                          ++++           .+.++|               
T Consensus        96 e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~  175 (297)
T cd06656          96 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM  175 (297)
T ss_pred             cccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcc
Confidence            99987 888887543211                          1111           112222               


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                         ..|+|||.+. +..++.++|+|||||++|++++|+.||...+
T Consensus       176 ~~~~~y~aPE~~~-~~~~~~~~Di~slGvil~~l~tg~~pf~~~~  219 (297)
T cd06656         176 VGTPYWMAPEVVT-RKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN  219 (297)
T ss_pred             cCCccccCHHHHc-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence               2388999554 4557899999999999999999999997654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.89  E-value=2.5e-22  Score=168.11  Aligned_cols=95  Identities=27%  Similarity=0.388  Sum_probs=78.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEE-----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLN-----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT  110 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~  110 (218)
                      .+..++|++.+.||+|+||.||+|+.     ..++..||+|+++... .....+.+.+|+.+++.+ +||||+++++++.
T Consensus        31 ~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~-~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~  109 (375)
T cd05104          31 EFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHINIVNLLGACT  109 (375)
T ss_pred             ccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCc-CcHHHHHHHHHHHHHHHhcCCcceeeeeeeec
Confidence            34456899999999999999999974     2456789999986432 223356788999999999 8999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhh
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                      ..+..++||||+++ +|.+++..
T Consensus       110 ~~~~~~lv~E~~~~g~L~~~l~~  132 (375)
T cd05104         110 VGGPTLVITEYCCYGDLLNFLRR  132 (375)
T ss_pred             cCCcceeeehhccCCcHHHHHHh
Confidence            99999999999987 88888754

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.89  E-value=1.8e-22  Score=160.30  Aligned_cols=154  Identities=26%  Similarity=0.468  Sum_probs=120.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..+|++.+.||.|+||.||+|.... +..+++|.+....  ......+..|+.+++.++|+|++++++++......+++|
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDD--LLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIIT   81 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccc--hhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEE
Confidence            4569999999999999999999876 8999999987432  223567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC-----------------------------Ccccc-----------ccccC------------
Q 041487          120 EYLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEVG------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~g------------  146 (218)
                      ||+++ +|.+++......                             ++++.           +.++|            
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~  161 (261)
T cd05148          82 ELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLS  161 (261)
T ss_pred             eecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCccccc
Confidence            99987 999988653211                             22221           11222            


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                            ..|++||.. ....++.++||||||+++|++++ |+.||...+.......+.
T Consensus       162 ~~~~~~~~~~~PE~~-~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~  218 (261)
T cd05148         162 SDKKIPYKWTAPEAA-SHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQIT  218 (261)
T ss_pred             cCCCCceEecCHHHH-ccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHH
Confidence                  138999954 45568899999999999999999 899998775544444443

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.88  E-value=5.2e-22  Score=159.47  Aligned_cols=145  Identities=23%  Similarity=0.425  Sum_probs=112.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++++.||+|+||.||+|.+..++..+|+|.+.... .....+.+.+|+.++++++|||++++++.+......+++||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   79 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI-TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTE   79 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC-ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEe
Confidence            36889999999999999999998999999999987542 23334678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhh---------------------ccc--CCcccc-----------ccccC----------------Ccc
Q 041487          121 YLDL-DLGSFIRK---------------------HTI--TSIRPH-----------IKEVG----------------SPY  149 (218)
Q Consensus       121 ~~~~-~L~~~~~~---------------------~~~--~~~~~~-----------~~~~g----------------~~y  149 (218)
                      |+++ +|..+...                     .+.  .++++.           +.++|                ..|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y  159 (279)
T cd06619          80 FMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAY  159 (279)
T ss_pred             cCCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhh
Confidence            9987 55433211                     000  022221           12222                248


Q ss_pred             cCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          150 KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       150 ~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      +|||.+ .+..++.++|+|||||++|+|++|+.||...
T Consensus       160 ~aPE~~-~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  196 (279)
T cd06619         160 MAPERI-SGEQYGIHSDVWSLGISFMELALGRFPYPQI  196 (279)
T ss_pred             cCceee-cCCCCCCcchHHHHHHHHHHHHhCCCCchhh
Confidence            999954 4556899999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.88  E-value=4.5e-22  Score=158.47  Aligned_cols=151  Identities=25%  Similarity=0.450  Sum_probs=113.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++.+.||+|+||.||+|++..+ ..||+|.++...   ...+.+.+|+.++++++|+|++++++.+. ....+++
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~-~~valK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv   78 (262)
T cd05071           4 PRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGT---MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIV   78 (262)
T ss_pred             ChHHeeEeeecCCCCCCcEEEEEecCC-ceEEEEecccCc---cCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEE
Confidence            456799999999999999999987544 469999987432   23467889999999999999999998874 4558999


Q ss_pred             EecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC-----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g-----------  146 (218)
                      |||+++ +|.+++......                             +++|.+           .++|           
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~  158 (262)
T cd05071          79 TEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT  158 (262)
T ss_pred             EEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccc
Confidence            999987 999988653210                             222211           1111           


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHH
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLI  195 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~  195 (218)
                              ..|+|||.. .+..++.++|||||||++|+++| |..||.......+...
T Consensus       159 ~~~~~~~~~~y~~PE~~-~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~  215 (262)
T cd05071         159 ARQGAKFPIKWTAPEAA-LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQ  215 (262)
T ss_pred             cccCCcccceecCHhHh-ccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHH
Confidence                    239999954 45558999999999999999999 8899987754444333

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.88  E-value=3.9e-22  Score=163.04  Aligned_cols=157  Identities=24%  Similarity=0.435  Sum_probs=118.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCc----EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +...+|++.+.||+|+||.||+|....++.    .||+|.++.. ......+.+.+|+.+++.++||||+++++++... 
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-   81 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-   81 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-
Confidence            456789999999999999999998765554    4899998632 2334467788999999999999999999998764 


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------  146 (218)
                      ..++++||+.+ +|.+++......                            ++++.           +.++|       
T Consensus        82 ~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~  161 (316)
T cd05108          82 TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  161 (316)
T ss_pred             CceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccC
Confidence            46789999876 888887654321                            22221           11221       


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                   ..|+|||.+ ....++.++|||||||++|++++ |+.||.+.....+..+..
T Consensus       162 ~~~~~~~~~~~~~~~y~apE~~-~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~  225 (316)
T cd05108         162 DEKEYHAEGGKVPIKWMALESI-LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILE  225 (316)
T ss_pred             CCcceeccCCccceeecChHHh-ccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHh
Confidence                         239999955 44558999999999999999998 999998765555554444

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=5.1e-23  Score=169.27  Aligned_cols=148  Identities=25%  Similarity=0.401  Sum_probs=110.9

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC---CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL---EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      ||+|+||.||+|+++.++..||+|++.+... ..........|..++...   +||+|+++++.+.....+|+||||+.+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            6999999999999999999999999865432 222334455566666655   699999999999999999999999986


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC------------------C
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG------------------S  147 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g------------------~  147 (218)
                       +|.+++......                           +++|.           +.++|                  .
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~  160 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTT  160 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCc
Confidence             887776543221                           22221           12222                  2


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      .|+|||.+.....++.++|||||||++|+|++|+.||...+...+...+
T Consensus       161 ~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i  209 (330)
T cd05586         161 EYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNI  209 (330)
T ss_pred             cccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHH
Confidence            3999997766666899999999999999999999999887655544433

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.88  E-value=1.2e-21  Score=155.95  Aligned_cols=145  Identities=28%  Similarity=0.535  Sum_probs=114.3

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-------CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-------GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-------~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      +|.+.+.||.|++|.||+|.+..++..+|+|.+.......       ...+.+.+|+.+++.++||||+++++++.....
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            3677889999999999999998889999999887543222       123568889999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccccC---------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG---------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g---------  146 (218)
                      .+++|||+++ +|.+++......                           ++.|.           +.++|         
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANS  160 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccccccc
Confidence            9999999987 888887654321                           11111           11111         


Q ss_pred             ---------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                     ..|+|||.+ .+..++.++|+|||||++|++++|+.||...
T Consensus       161 ~~~~~~~~~~~~~~~~~y~~pe~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  215 (267)
T cd06628         161 LSTKTNGARPSLQGSVFWMAPEVV-KQTSYTRKADIWSLGCLVVEMLTGKHPFPDC  215 (267)
T ss_pred             ccCCccccccccCCCcCccChhHh-ccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence                           248899954 4455788999999999999999999999865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.88  E-value=7.1e-22  Score=156.91  Aligned_cols=153  Identities=28%  Similarity=0.493  Sum_probs=115.5

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++.+.||+|+||.||+|.. .++..+|+|.+....   ...+.+.+|+.++++++|+|++++++++. ....++
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~-~~~~~~a~K~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~   77 (260)
T cd05067           3 VPRETLKLVKKLGAGQFGEVWMGYY-NGHTKVAIKSLKQGS---MSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYI   77 (260)
T ss_pred             cchHHceeeeeeccCccceEEeeec-CCCceEEEEEecCCC---CcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEE
Confidence            4567899999999999999999985 467889999986432   23467889999999999999999998874 456899


Q ss_pred             EEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV-----------  145 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~-----------  145 (218)
                      +|||+.+ +|.+++......                             +++|.+           .++           
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  157 (260)
T cd05067          78 ITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEY  157 (260)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCc
Confidence            9999976 898887543211                             111111           111           


Q ss_pred             --------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          146 --------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       146 --------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                              ...|+|||.+ ....++.++||||||+++|++++ |+.||.+.+........
T Consensus       158 ~~~~~~~~~~~y~~pe~~-~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~  216 (260)
T cd05067         158 TAREGAKFPIKWTAPEAI-NYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNL  216 (260)
T ss_pred             ccccCCcccccccCHHHh-ccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHH
Confidence                    1249999954 45558899999999999999999 99999877554444433

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.88  E-value=3.3e-23  Score=157.84  Aligned_cols=150  Identities=23%  Similarity=0.370  Sum_probs=120.0

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe----
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT----  111 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----  111 (218)
                      -.+...+|++.+.+|+|+|+.|++++...++..+|+|.+.+..  .+..+...+|++..++++|||+++++++...    
T Consensus        16 v~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~--~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D   93 (302)
T KOG2345|consen   16 VIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS--QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKD   93 (302)
T ss_pred             EEEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccc--hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhcc
Confidence            3467889999999999999999999988999999999987643  5567889999999999999999999998642    


Q ss_pred             -CCEEEEEEecCCC-ChHHHhhhcccC---------------------------------Cccccc-----------cc-
Q 041487          112 -GRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------------SIRPHI-----------KE-  144 (218)
Q Consensus       112 -~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------~~~~~~-----------~~-  144 (218)
                       ....|++.+|... +|.|.+......                                 |++|.+           .+ 
T Consensus        94 ~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~  173 (302)
T KOG2345|consen   94 GKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDL  173 (302)
T ss_pred             CceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEec
Confidence             3459999999865 798888653322                                 334432           12 


Q ss_pred             --------------------------cCCcccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 --------------------------VGSPYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 --------------------------~g~~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                                ++.+|.|||.+.-  +...+.++|||||||+||+|+-|.-||+..
T Consensus       174 GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~  244 (302)
T KOG2345|consen  174 GSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERI  244 (302)
T ss_pred             cCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHH
Confidence                                      3445999995432  233778999999999999999999999743

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.88  E-value=9.1e-25  Score=168.05  Aligned_cols=160  Identities=25%  Similarity=0.378  Sum_probs=125.8

Q ss_pred             ccCCChhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeee
Q 041487           27 KKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRL  105 (218)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~  105 (218)
                      ...++......+..++.+-++.||+|+||+|++-.++++|+..|||.++.... ....+++..|.++..+- +.|+||++
T Consensus        50 l~~p~~~~~~~F~~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~-~keq~rll~e~d~~mks~~cp~IVkf  128 (361)
T KOG1006|consen   50 LKLPDDAHLHTFTSDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI-EKEQKRLLMEHDTVMKSSNCPNIVKF  128 (361)
T ss_pred             eecCCcccccccccchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc-hHHHHHHHHHHHHHHhhcCCcHHHHH
Confidence            34455566777888888889999999999999999999999999999986544 34467788888765554 78999999


Q ss_pred             eeeEEeCCEEEEEEecCCCChHHHhhhc------cc---------------------------CCcccccc---------
Q 041487          106 LDVLTTGRYVYLVFEYLDLDLGSFIRKH------TI---------------------------TSIRPHIK---------  143 (218)
Q Consensus       106 ~~~~~~~~~~~lv~E~~~~~L~~~~~~~------~~---------------------------~~~~~~~~---------  143 (218)
                      |+.+...+-.|+-||.|+.+|..+.+.-      ..                           .+++|.+.         
T Consensus       129 yGa~F~EGdcWiCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vK  208 (361)
T KOG1006|consen  129 YGALFSEGDCWICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVK  208 (361)
T ss_pred             hhhhhcCCceeeeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEe
Confidence            9999999999999999987776655431      00                           04444331         


Q ss_pred             -------------------ccCCcccCcccccCCCC-CCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          144 -------------------EVGSPYKAPESRIRSSV-YSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       144 -------------------~~g~~y~aPE~~~~~~~-~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                         ....+|||||.+..... |+.++||||||++|||++||+.||..-
T Consensus       209 LCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w  272 (361)
T KOG1006|consen  209 LCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKW  272 (361)
T ss_pred             eecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchH
Confidence                               11245999997665544 999999999999999999999999865

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.88  E-value=2e-21  Score=154.17  Aligned_cols=146  Identities=27%  Similarity=0.421  Sum_probs=117.5

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|++|.||+|++..++..+++|.+...... ...+.+.+|+..+.+++|+|++++++.+......+++||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE-EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLE   79 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEE
Confidence            3689999999999999999999989999999998754332 456789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC----------------------------Ccccc-----------cccc---------------
Q 041487          121 YLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~---------------  145 (218)
                      |+++ +|.+++......                            ++++.           ..++               
T Consensus        80 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~  159 (264)
T cd06623          80 YMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNT  159 (264)
T ss_pred             ecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcccc
Confidence            9995 898887652211                            11111           0111               


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                         ...|+|||.+ ....++.++|+||||+++|++++|+.||....
T Consensus       160 ~~~~~~y~~pE~~-~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~  204 (264)
T cd06623         160 FVGTVTYMSPERI-QGESYSYAADIWSLGLTLLECALGKFPFLPPG  204 (264)
T ss_pred             eeecccccCHhhh-CCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence               1238899954 45568899999999999999999999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.88  E-value=5.3e-22  Score=160.11  Aligned_cols=152  Identities=27%  Similarity=0.490  Sum_probs=117.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +..++|.+.+.||+|+||.||++...     .++..+|+|.+...  .....+.+.+|+.++++++||+++++++++...
T Consensus         2 ~~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (288)
T cd05093           2 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEG   79 (288)
T ss_pred             CchHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC
Confidence            45678999999999999999999853     24566899987632  233456789999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc--------------C--------------------------Cccccc---------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI--------------T--------------------------SIRPHI---------  142 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~--------------~--------------------------~~~~~~---------  142 (218)
                      +..+++|||+++ +|.+++.....              .                          +++|.+         
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~  159 (288)
T cd05093          80 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLV  159 (288)
T ss_pred             CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcE
Confidence            999999999986 99888864421              0                          222211         


Q ss_pred             --cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchH
Q 041487          143 --KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHL  192 (218)
Q Consensus       143 --~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~  192 (218)
                        .++|                    ..|+|||. ..+..++.++|||||||++|+|++ |..||........
T Consensus       160 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~-~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~  231 (288)
T cd05093         160 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPES-IMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEV  231 (288)
T ss_pred             EeccCCccccccCCceeecCCCCCccccccCHHH-hccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence              1111                    14999995 455668999999999999999999 9999987654433

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.88  E-value=6.6e-22  Score=163.18  Aligned_cols=149  Identities=37%  Similarity=0.639  Sum_probs=117.4

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----CE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----RY  114 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~  114 (218)
                      ..+|.+.+.||+|+||.||+|++..++..||+|.+............+.+|+.+++.++|+||+++++++...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            4579999999999999999999999999999999875443444456778899999999999999999987643     35


Q ss_pred             EEEEEecCCCChHHHhhhcccC---------------------------Ccccc-----------cccc-----------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPH-----------IKEV-----------  145 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------  145 (218)
                      .++++||+.++|.+++......                           ++++.           +.++           
T Consensus        84 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  163 (337)
T cd07858          84 VYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGD  163 (337)
T ss_pred             EEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcc
Confidence            8999999998888877553321                           11111           1111           


Q ss_pred             -------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             ...|+|||.+.....++.++|||||||++|+|++|+.||.+.+
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  213 (337)
T cd07858         164 FMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKD  213 (337)
T ss_pred             cccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCC
Confidence                   2238999976665568999999999999999999999998653

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.88  E-value=4.8e-22  Score=167.59  Aligned_cols=96  Identities=26%  Similarity=0.354  Sum_probs=79.3

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccC-----CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLET-----GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVL  109 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~  109 (218)
                      .....++|.+.+.||+|+||.||+|++...     +..||+|.++.. ......+.+.+|+.+++++. ||||+++++++
T Consensus        32 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~-~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~  110 (400)
T cd05105          32 WEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT-ARSSEKQALMSELKIMTHLGPHLNIVNLLGAC  110 (400)
T ss_pred             eeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCC-CChHHHHHHHHHHHHHHhcCCCCCeeeEEEEE
Confidence            345577899999999999999999986433     346999998643 23334568899999999995 99999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhh
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                      ......++|||||++ +|.+++..
T Consensus       111 ~~~~~~~lv~Ey~~~g~L~~~l~~  134 (400)
T cd05105         111 TKSGPIYIITEYCFYGDLVNYLHK  134 (400)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHH
Confidence            999999999999987 88887754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.88  E-value=9.6e-22  Score=155.73  Aligned_cols=153  Identities=28%  Similarity=0.475  Sum_probs=120.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +...+|++.+.||.|++|.||+|..  .++.+|+|.++....   ..+.+.+|+.++++++|+|++++++++......++
T Consensus         3 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   77 (256)
T cd05039           3 INSKELKLGATIGKGEFGDVMLGDY--RGQKVAVKCLKDDST---AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYI   77 (256)
T ss_pred             cChhhccceeeeecCCCceEEEEEe--cCcEEEEEEeccchh---HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEE
Confidence            3467899999999999999999986  588999999874322   46789999999999999999999999998999999


Q ss_pred             EEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +|||+++ +|.+++......                             +++|.+           .++|          
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~  157 (256)
T cd05039          78 VTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD  157 (256)
T ss_pred             EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccc
Confidence            9999986 999988654310                             222221           2222          


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                           ..|.|||.+. ...++.++||||||+++|++++ |+.||.......+...+
T Consensus       158 ~~~~~~~~~ape~~~-~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~  212 (256)
T cd05039         158 SGKLPVKWTAPEALR-EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHV  212 (256)
T ss_pred             cCCCcccccCchhhc-CCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence                 2389999654 4558899999999999999998 99999877555544433

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.88  E-value=4.7e-22  Score=157.74  Aligned_cols=149  Identities=23%  Similarity=0.435  Sum_probs=112.6

Q ss_pred             EeeecCceEEEEEEE--ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           48 KIGQGVFGEVYKCLN--LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~--~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      .||+|+||.||+|..  ..++..+|+|+++.........+.+.+|+.+++.++||||+++++++. ....+++|||+++ 
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            689999999999965  356789999998754444445678899999999999999999999875 4467899999986 


Q ss_pred             ChHHHhhhcccC---------------------------Cccccc-----------ccc---------------------
Q 041487          125 DLGSFIRKHTIT---------------------------SIRPHI-----------KEV---------------------  145 (218)
Q Consensus       125 ~L~~~~~~~~~~---------------------------~~~~~~-----------~~~---------------------  145 (218)
                      +|.+++......                           +++|.+           .++                     
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  160 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKW  160 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCC
Confidence            898888653221                           122211           111                     


Q ss_pred             CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          146 GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                      ...|+|||.+ ....++.++|+|||||++|++++ |+.||...+...+...++.
T Consensus       161 ~~~y~aPE~~-~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~  213 (257)
T cd05116         161 PVKWYAPECM-NYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIES  213 (257)
T ss_pred             CccccCHhHh-ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHC
Confidence            1358999954 45568899999999999999998 9999987755555555554

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.88  E-value=7e-22  Score=157.64  Aligned_cols=152  Identities=22%  Similarity=0.389  Sum_probs=113.6

Q ss_pred             eeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC------
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR------  113 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------  113 (218)
                      |++.+.||+|+||.||+|....+   +..+|+|.++...........+.+|+.+++.++|||++++++.+....      
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            57889999999999999987643   478999998754444445567899999999999999999999876544      


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC---------------------------------Cccccc-----------cccC--
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT---------------------------------SIRPHI-----------KEVG--  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------~~~~~~-----------~~~g--  146 (218)
                      ..++++||+.+ +|..++......                                 +++|.+           .++|  
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccce
Confidence            38999999986 887776432110                                 222211           1221  


Q ss_pred             ------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHH
Q 041487          147 ------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLI  195 (218)
Q Consensus       147 ------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~  195 (218)
                                        ..|+|||.+ .+..++.++|||||||++|+|++ |..||...+...+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~  227 (273)
T cd05035         161 KKIYSGDYYRQGRIAKMPVKWIAIESL-ADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDY  227 (273)
T ss_pred             eeccccccccccccccCCccccCHhhc-ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence                              248999954 55668999999999999999999 8999987655444433

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.88  E-value=5.3e-22  Score=163.51  Aligned_cols=148  Identities=34%  Similarity=0.618  Sum_probs=117.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE----eCCEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT----TGRYVY  116 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----~~~~~~  116 (218)
                      ++|++.+.||+|++|.||+|.+..++..||+|.+..........+.+.+|+.+++.++||||+++++++.    .....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            7899999999999999999999999999999998765444455677888999999999999999999875    345789


Q ss_pred             EEEecCCCChHHHhhhcccC---------------------------Ccccc-----------cccc-------------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT---------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-------------  145 (218)
                      +||||+.++|.+++......                           ++++.           +.++             
T Consensus        85 lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  164 (334)
T cd07855          85 VVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEH  164 (334)
T ss_pred             EEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCC
Confidence            99999988888877543221                           11111           1111             


Q ss_pred             ---------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ---------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ---------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                               ...|+|||.+.....++.++|||||||++|+|++|+.||...+
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~  216 (334)
T cd07855         165 KYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN  216 (334)
T ss_pred             CcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCC
Confidence                     1238899976665668999999999999999999999998753

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.88  E-value=5.6e-22  Score=160.72  Aligned_cols=153  Identities=30%  Similarity=0.470  Sum_probs=116.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCc--EEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGK--KVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ++|++.+.||+|+||.||+|....++.  .+++|.++.. ......+.+.+|+.++.++ .||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l   80 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEF-ASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYI   80 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEcccc-CCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceE
Confidence            579999999999999999999876664  4688877632 2333456788999999999 79999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC-------------------------------------------Ccccc-----------c
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRPH-----------I  142 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~~-----------~  142 (218)
                      +|||+++ +|.+++......                                           +++|.           +
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl  160 (297)
T cd05089          81 AIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKI  160 (297)
T ss_pred             EEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEE
Confidence            9999986 999888653210                                           22222           1


Q ss_pred             cccC-----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHH
Q 041487          143 KEVG-----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLI  195 (218)
Q Consensus       143 ~~~g-----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~  195 (218)
                      .++|                 ..|+|||. ..+..++.++|||||||++|+|++ |..||...........
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~-~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~  230 (297)
T cd05089         161 ADFGLSRGEEVYVKKTMGRLPVRWMAIES-LNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEK  230 (297)
T ss_pred             CCcCCCccccceeccCCCCcCccccCchh-hccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence            2222                 13999995 445558999999999999999998 9999987755544443

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.88  E-value=1e-21  Score=155.29  Aligned_cols=147  Identities=28%  Similarity=0.523  Sum_probs=116.5

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC---CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE---PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      +|+..+.||+|++|.||+|..+.++..+++|.+.....   ..+..+.+.+|+.+++.++|+|++++++.+......+++
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            46778899999999999999988899999999875432   234567889999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc--------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~--------------  145 (218)
                      +||+++ +|.+++......                           ++++.           +.++              
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~  160 (258)
T cd06632          81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKS  160 (258)
T ss_pred             EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccccccc
Confidence            999987 898888654321                           11111           1111              


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                        + ..|++||.+.....++.++|+||||+++|++++|+.||....
T Consensus       161 ~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~  206 (258)
T cd06632         161 FKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE  206 (258)
T ss_pred             cCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc
Confidence              1 238899965444448899999999999999999999997653

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.88  E-value=5.3e-22  Score=164.18  Aligned_cols=150  Identities=32%  Similarity=0.607  Sum_probs=118.3

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE----
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY----  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~----  114 (218)
                      ..++|++.+.||+|++|.||+|.+..++..||+|.+..........+.+.+|+.+++.++|+|++++.+++.....    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            3678999999999999999999998899999999987544344455677889999999999999999998865554    


Q ss_pred             --EEEEEecCCCChHHHhhhcccC--------------------------Ccccc-----------cccc----------
Q 041487          115 --VYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH-----------IKEV----------  145 (218)
Q Consensus       115 --~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~-----------~~~~----------  145 (218)
                        .++++||++.+|.+++......                          ++++.           +.++          
T Consensus        93 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~  172 (343)
T cd07851          93 QDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEM  172 (343)
T ss_pred             ccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccccccc
Confidence              9999999988888877553221                          12221           1111          


Q ss_pred             -----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                           ...|+|||.+.....++.++|||||||++|++++|+.||...+
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~  220 (343)
T cd07851         173 TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSD  220 (343)
T ss_pred             cCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence                 1238999976555568899999999999999999999998763

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.88  E-value=1.4e-21  Score=158.89  Aligned_cols=150  Identities=25%  Similarity=0.424  Sum_probs=113.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc----------------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE----------------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN  101 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~----------------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~  101 (218)
                      +..++|.+.+.||+|+||.||+|....                ++..||+|.+.... .......+.+|+.++.+++|||
T Consensus         2 ~~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~n   80 (304)
T cd05096           2 FPRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA-NKNARNDFLKEVKILSRLKDPN   80 (304)
T ss_pred             CchhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC-CHHHHHHHHHHHHHHhhcCCCC
Confidence            345789999999999999999997532                34579999986432 2333567889999999999999


Q ss_pred             eeeeeeeEEeCCEEEEEEecCCC-ChHHHhhhccc---------------------------------------------
Q 041487          102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTI---------------------------------------------  135 (218)
Q Consensus       102 iv~~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~---------------------------------------------  135 (218)
                      |+++++++...+..+++|||+.+ +|.+++.....                                             
T Consensus        81 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~iv  160 (304)
T cd05096          81 IIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFV  160 (304)
T ss_pred             eeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            99999999999999999999977 88887754210                                             


Q ss_pred             -CCcccc-----------ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh--CC
Q 041487          136 -TSIRPH-----------IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS--GK  181 (218)
Q Consensus       136 -~~~~~~-----------~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t--g~  181 (218)
                       .+++|.           +.++|                    ..|+|||.+. .+.++.++|||||||++|+|++  +.
T Consensus       161 H~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~~l~el~~~~~~  239 (304)
T cd05096         161 HRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECIL-MGKFTTASDVWAFGVTLWEILMLCKE  239 (304)
T ss_pred             ccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHh-cCCCCchhhhHHHHHHHHHHHHccCC
Confidence             022221           12222                    1389999654 4558999999999999999987  56


Q ss_pred             CCCCCCCc
Q 041487          182 PLFPCGKK  189 (218)
Q Consensus       182 ~Pf~~~~~  189 (218)
                      .||...+.
T Consensus       240 ~p~~~~~~  247 (304)
T cd05096         240 QPYGELTD  247 (304)
T ss_pred             CCCCcCCH
Confidence            78876543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.88  E-value=5.7e-22  Score=159.56  Aligned_cols=150  Identities=27%  Similarity=0.486  Sum_probs=116.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++++.||+|+||.||++.+..++..+|+|.++.. ........+.+|+.++++++|+||+++++.+...+.++++||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLE-LDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCME   79 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecc-cCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEe
Confidence            4688999999999999999999889999999988643 233334678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcc----cC---------------------------Cccc-----------cccccC-----------
Q 041487          121 YLDL-DLGSFIRKHT----IT---------------------------SIRP-----------HIKEVG-----------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~----~~---------------------------~~~~-----------~~~~~g-----------  146 (218)
                      |+++ +|..++....    ..                           +++|           .+.++|           
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  159 (286)
T cd06622          80 YMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAK  159 (286)
T ss_pred             ecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccc
Confidence            9987 8877765521    10                           1111           112222           


Q ss_pred             -----CcccCcccccCCC-----CCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 -----SPYKAPESRIRSS-----VYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 -----~~y~aPE~~~~~~-----~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                           ..|+|||.+....     .++.++|+|||||++|++++|+.||.......
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~  214 (286)
T cd06622         160 TNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYAN  214 (286)
T ss_pred             cCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhh
Confidence                 2489999654332     35789999999999999999999997654333

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.88  E-value=1.4e-21  Score=159.90  Aligned_cols=148  Identities=24%  Similarity=0.384  Sum_probs=115.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..|...+.||+|+||.||++.+..++..+|+|.+..... ..+....+.+|+.+++.++|+|++++++++......+++|
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEE
Confidence            337889999999999999999988999999999875432 2234567889999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC--------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------  146 (218)
                      ||+.+++.+++......                            ++.+.           +.++|              
T Consensus       105 e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  184 (317)
T cd06635         105 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGT  184 (317)
T ss_pred             eCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCCcccccCC
Confidence            99998887776432211                            11111           12222              


Q ss_pred             CcccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 SPYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ~~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                      ..|+|||.+.  ..+.++.++|||||||++|+|++|+.||...+
T Consensus       185 ~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~  228 (317)
T cd06635         185 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  228 (317)
T ss_pred             ccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence            2389999654  34558899999999999999999999997654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.88  E-value=2.6e-21  Score=154.01  Aligned_cols=145  Identities=28%  Similarity=0.517  Sum_probs=113.1

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC----CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP----EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +|++.+.||.|+||.||+|.. .++..+|+|.++.....    ......+.+|+.+++.++|+||+++++++...+..++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISI   79 (265)
T ss_pred             CccccceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEE
Confidence            478889999999999999975 57889999998754322    1234568899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc-------------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-------------  145 (218)
                      ++||+++ +|.+++......                           ++++.           ..++             
T Consensus        80 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  159 (265)
T cd06631          80 FMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHG  159 (265)
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccc
Confidence            9999987 898888654321                           11111           1111             


Q ss_pred             ----------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                | ..|+|||. ..+..++.++|+|||||++|++++|+.||...+
T Consensus       160 ~~~~~~~~~~~~~~~~~pe~-~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~  212 (265)
T cd06631         160 THSNMLKSMHGTPYWMAPEV-INESGYGRKSDIWSIGCTVFEMATGKPPLASMD  212 (265)
T ss_pred             cccccccccCCCccccChhh-hcCCCCcchhhHHHHHHHHHHHHhCCCccccCC
Confidence                      1 23888995 445558899999999999999999999998653

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.88  E-value=3.4e-22  Score=159.14  Aligned_cols=147  Identities=29%  Similarity=0.541  Sum_probs=116.1

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|++|.||++....++..+++|.+.... ......+.+.+|+.+++.++|+|++++++.+...+..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            57899999999999999999998899999999886543 22334567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhccc-----C--------------------------Ccccc-----------cccc-----------
Q 041487          120 EYLDL-DLGSFIRKHTI-----T--------------------------SIRPH-----------IKEV-----------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~-----~--------------------------~~~~~-----------~~~~-----------  145 (218)
                      ||+++ +|.+++.....     .                          ++++.           ..++           
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCc
Confidence            99987 88887753111     0                          11111           1111           


Q ss_pred             ------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                            + ..|+|||.+ .+..++.++|+||||+++|+|++|..||.+..
T Consensus       162 ~~~~~~~~~~~~ape~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  210 (267)
T cd08229         162 AAHSLVGTPYYMSPERI-HENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  210 (267)
T ss_pred             ccccccCCcCccCHHHh-cCCCccchhhHHHHHHHHHHHHhCCCCccccc
Confidence                  1 238899954 45558899999999999999999999997653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.88  E-value=3.9e-21  Score=152.58  Aligned_cols=146  Identities=29%  Similarity=0.522  Sum_probs=118.1

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||+|....++..+++|.++.........+.+.+|+.++++++|+||+++++.+......++++||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            58899999999999999999988999999999986654445678899999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc-----------------
Q 041487          122 LDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV-----------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------------  145 (218)
                      +++ +|.+++......                           ++++.           +.++                 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~  160 (264)
T cd06626          81 CSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEV  160 (264)
T ss_pred             CCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccc
Confidence            986 888887654221                           11111           1111                 


Q ss_pred             -----CCcccCcccccCCC--CCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -----GSPYKAPESRIRSS--VYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -----g~~y~aPE~~~~~~--~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                           ...|++||.+....  .++.++||||||+++|++++|+.||...
T Consensus       161 ~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         161 QSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             cCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCC
Confidence                 12489999654432  2788999999999999999999999765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.88  E-value=1.5e-21  Score=160.72  Aligned_cols=161  Identities=32%  Similarity=0.582  Sum_probs=119.9

Q ss_pred             cccee-EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCC------------chHHHHHHHHHHhhCCCCCeeeee
Q 041487           40 DWNYK-VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG------------VPSYLIAGVSLLKELEHDNIVRLL  106 (218)
Q Consensus        40 ~~~~~-~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~------------~~~~~~~e~~~l~~l~h~~iv~~~  106 (218)
                      .++|. +.+.||.|+||.||+|.++..++.||+|.++.......            ....+.+|+.+++.++|+||++++
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV   86 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence            45665 45779999999999999988999999999875432210            112577899999999999999999


Q ss_pred             eeEEeCCEEEEEEecCCCChHHHhhhcccC---------------------------Ccccc-----------cccc---
Q 041487          107 DVLTTGRYVYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPH-----------IKEV---  145 (218)
Q Consensus       107 ~~~~~~~~~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~-----------~~~~---  145 (218)
                      +++......+++|||++++|.+++......                           ++.+.           ..++   
T Consensus        87 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~  166 (335)
T PTZ00024         87 DVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLA  166 (335)
T ss_pred             EEEecCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccce
Confidence            999999999999999998888887543221                           11111           1111   


Q ss_pred             -----------------------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHH
Q 041487          146 -----------------------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLI  195 (218)
Q Consensus       146 -----------------------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~  195 (218)
                                                   ...|+|||.+.+...++.++|||||||++|+|++|+.||...+ .+.+..+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i  246 (335)
T PTZ00024        167 RRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRI  246 (335)
T ss_pred             eecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                                         1238999977665667899999999999999999999998763 3334444


Q ss_pred             HHHhc
Q 041487          196 VRYFT  200 (218)
Q Consensus       196 ~~~~~  200 (218)
                      ...++
T Consensus       247 ~~~~~  251 (335)
T PTZ00024        247 FELLG  251 (335)
T ss_pred             HHHhC
Confidence            44333

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.88  E-value=8.4e-22  Score=156.49  Aligned_cols=154  Identities=25%  Similarity=0.484  Sum_probs=115.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +..++|++.+.||+|++|.||+|... .+..+|+|.+.....   ..+.+.+|+.++++++|++++++++++. ....++
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~k~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~l   77 (260)
T cd05070           3 IPRESLQLIKKLGNGQFGEVWMGTWN-GNTKVAVKTLKPGTM---SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYI   77 (260)
T ss_pred             CchHHhhhhheeccccCceEEEEEec-CCceeEEEEecCCCC---CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEE
Confidence            44578999999999999999999764 567799999864322   3467899999999999999999999875 456899


Q ss_pred             EEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +|||+++ +|.+++......                             ++++.+           .++|          
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~  157 (260)
T cd05070          78 VTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEY  157 (260)
T ss_pred             EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCccc
Confidence            9999987 898887643211                             122211           1111          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                               ..|+|||.+ ....++.++||||||+++|++++ |..||...+.......+.
T Consensus       158 ~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~  217 (260)
T cd05070         158 TARQGAKFPIKWTAPEAA-LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVE  217 (260)
T ss_pred             ccccCCCCCccccChHHH-hcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence                     249999954 45558899999999999999999 899998765544444433

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.88  E-value=1.3e-21  Score=159.34  Aligned_cols=161  Identities=25%  Similarity=0.431  Sum_probs=122.1

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEcc-------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeee
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLE-------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDV  108 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~  108 (218)
                      .+..++|.+.+.||+|+||.||++.+..       ....+|+|.+.... .....+.+.+|+.+++.+ +|+||++++++
T Consensus        14 ~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (307)
T cd05098          14 EVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA-TEKDLSDLISEMEMMKMIGKHKNIINLLGA   92 (307)
T ss_pred             eeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC-ChHHHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            4556789999999999999999998643       23579999987532 233456788899999999 79999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhccc----------------C---------------------------Cccccc--
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTI----------------T---------------------------SIRPHI--  142 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~----------------~---------------------------~~~~~~--  142 (218)
                      +...+..+++|||+++ +|.+++.....                .                           +++|.+  
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  172 (307)
T cd05098          93 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  172 (307)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheE
Confidence            9999999999999987 99988865321                0                           111111  


Q ss_pred             ---------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchH
Q 041487          143 ---------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHL  192 (218)
Q Consensus       143 ---------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~  192 (218)
                               .++|                    ..|+|||.+ .+..++.++|||||||++|+|++ |..||.....+.+
T Consensus       173 l~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~  251 (307)
T cd05098         173 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL-FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEEL  251 (307)
T ss_pred             EcCCCcEEECCCcccccccccchhhccccCCCccceeChHHh-ccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHH
Confidence                     1111                    249999955 44558999999999999999998 8999988766666


Q ss_pred             HHHHHHh
Q 041487          193 SLIVRYF  199 (218)
Q Consensus       193 ~~~~~~~  199 (218)
                      ...+...
T Consensus       252 ~~~~~~~  258 (307)
T cd05098         252 FKLLKEG  258 (307)
T ss_pred             HHHHHcC
Confidence            6555543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.88  E-value=1.8e-21  Score=160.45  Aligned_cols=148  Identities=34%  Similarity=0.619  Sum_probs=115.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----CE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----RY  114 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~  114 (218)
                      .++|++.+.||+|++|.||+|.+..++..||+|.+... ........+.+|+.+++.++|+||+++++++...     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPF-EHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEeccc-ccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            46899999999999999999999999999999998642 2233456788899999999999999999987543     35


Q ss_pred             EEEEEecCCCChHHHhhhcccC--------------------------Ccccc-----------cccc------------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH-----------IKEV------------  145 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~-----------~~~~------------  145 (218)
                      .++++||+.+++.+++......                          ++++.           +.++            
T Consensus        83 ~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~  162 (336)
T cd07849          83 VYIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDH  162 (336)
T ss_pred             EEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccccccc
Confidence            8999999988877765543211                          11111           1111            


Q ss_pred             ---------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ---------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ---------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                               ...|+|||.+.....++.++||||+||++|+|++|+.||.+.+
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~  214 (336)
T cd07849         163 TGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKD  214 (336)
T ss_pred             cCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                     1238999976666668999999999999999999999998653

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.88  E-value=3.8e-21  Score=157.14  Aligned_cols=146  Identities=25%  Similarity=0.402  Sum_probs=114.8

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      |...+.||+|+||.||+|++..++..+++|.+..... .....+.+.+|+.+++.++|||++++++++..+...|++|||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            6778889999999999999988999999999875432 233446788899999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC----------------------------Ccccc-----------ccccC--------------Cc
Q 041487          122 LDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------SP  148 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------~~  148 (218)
                      +.+++.+++......                            ++.+.           ..++|              ..
T Consensus       103 ~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~  182 (313)
T cd06633         103 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPY  182 (313)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCCCCCcccccc
Confidence            988887776543211                            11111           12221              24


Q ss_pred             ccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          149 YKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       149 y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                      |+|||.+.  ....++.++|||||||++|+|++|..||...+
T Consensus       183 y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~  224 (313)
T cd06633         183 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  224 (313)
T ss_pred             ccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            89999653  24558889999999999999999999997764

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.88  E-value=2.7e-21  Score=157.56  Aligned_cols=147  Identities=35%  Similarity=0.686  Sum_probs=116.2

Q ss_pred             ceeEEEEeeecCceEEEEEEEcc--CCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLE--TGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RYVY  116 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~--~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~  116 (218)
                      +|++.+.||+|++|.||+|.+..  .+..+|+|.+.... ......+.+.+|+.+++.++|||++++++++...  ..++
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            58899999999999999999987  78999999997543 2234456788999999999999999999999877  8899


Q ss_pred             EEEecCCCChHHHhhhcccC--------------------------------Cccc---------------cccccC---
Q 041487          117 LVFEYLDLDLGSFIRKHTIT--------------------------------SIRP---------------HIKEVG---  146 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~--------------------------------~~~~---------------~~~~~g---  146 (218)
                      +||||++.++.+++......                                ++++               .+.++|   
T Consensus        81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~  160 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLAR  160 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCcccc
Confidence            99999988777665432110                                1111               111222   


Q ss_pred             ------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                        ..|+|||.+.....++.++|||||||++|+|++|++||.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  220 (316)
T cd07842         161 LFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGRE  220 (316)
T ss_pred             ccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCc
Confidence                              238999976665668899999999999999999999998763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.88  E-value=1.4e-21  Score=157.73  Aligned_cols=157  Identities=25%  Similarity=0.429  Sum_probs=117.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +..++|++.+.||+|+||.||+|..+.     .+..||+|.+.... .......+.+|+.++++++|+|++++++++...
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA-SLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG   81 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            456889999999999999999997653     34579999876332 222344677899999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC-------------------------------------Cccccc-----------c
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------SIRPHI-----------K  143 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------~~~~~~-----------~  143 (218)
                      ...+++|||+++ +|.+++......                                     +++|.+           .
T Consensus        82 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~  161 (288)
T cd05061          82 QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIG  161 (288)
T ss_pred             CCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEEC
Confidence            999999999986 999988642110                                     122211           1


Q ss_pred             ccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          144 EVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       144 ~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                      ++|                    ..|+|||.+. +..++.++|||||||++|++++ |..||.+.........+
T Consensus       162 Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~-~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~  234 (288)
T cd05061         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLK-DGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFV  234 (288)
T ss_pred             cCCccccccccccccccCCCcccccccCHHHhc-cCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            222                    2399999544 4558999999999999999999 78999877555444433

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.88  E-value=1.1e-21  Score=157.45  Aligned_cols=158  Identities=22%  Similarity=0.406  Sum_probs=121.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCc----EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +...+|++.+.||+|+||.||+|..+.++.    .+|+|.++... .......+.+|+.++++++|+|++++++++.. .
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~   81 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREET-SPKANKEILDEAYVMASVDHPHVVRLLGICLS-S   81 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-C
Confidence            456789999999999999999999876654    58999876432 23345678899999999999999999999877 7


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC-------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-------  146 (218)
                      ..+++|||+++ +|.+++......                            ++++.+           .++|       
T Consensus        82 ~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~  161 (279)
T cd05057          82 QVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDV  161 (279)
T ss_pred             ceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccC
Confidence            89999999986 898887653211                            222211           1221       


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                   ..|+|||.+ ....++.++|+||||+++|++++ |+.||.......+...+..
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~  226 (279)
T cd05057         162 DEKEYHAEGGKVPIKWMALESI-LHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEK  226 (279)
T ss_pred             cccceecCCCcccccccCHHHh-hcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhC
Confidence                         248999955 45558899999999999999999 9999998766666655554

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.88  E-value=1.7e-21  Score=154.43  Aligned_cols=156  Identities=31%  Similarity=0.546  Sum_probs=119.7

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCCEEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGRYVYLVF  119 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~lv~  119 (218)
                      +|++.+.||.|+||.||++.+..++..+|+|.+..........+.+..|+.+++.++|+|++++++.+.  .+...+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            588999999999999999999999999999998765555555678889999999999999999999875  456789999


Q ss_pred             ecCCC-ChHHHhhhccc----C--------------------------------Cccccc-----------cc-------
Q 041487          120 EYLDL-DLGSFIRKHTI----T--------------------------------SIRPHI-----------KE-------  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~----~--------------------------------~~~~~~-----------~~-------  144 (218)
                      ||+++ +|.+++.....    .                                ++++.+           .+       
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            99986 88877754210    0                                011100           01       


Q ss_pred             -----------cCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          145 -----------VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       145 -----------~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                                 ....|+|||.+ .+..++.++|+||||+++|+|++|+.||...+...+...+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~pE~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  224 (265)
T cd08217         161 GHDSSFAKTYVGTPYYMSPEQL-NHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKE  224 (265)
T ss_pred             cCCcccccccccCCCccChhhh-cCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhc
Confidence                       11238899954 445588999999999999999999999998765555555443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.88  E-value=1e-21  Score=155.27  Aligned_cols=143  Identities=27%  Similarity=0.509  Sum_probs=115.7

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||.|++|.||+|..+.++..+++|.++....    .+.+.+|+.+++.++|+|++++++.+......|+++|
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e   78 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED----LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVME   78 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH----HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEe
Confidence            579999999999999999999988899999999864321    6789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC----------------------------Ccccc-----------cccc---------------
Q 041487          121 YLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEV---------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~---------------  145 (218)
                      |+++ +|.+++......                            ++.+.           ..++               
T Consensus        79 ~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~  158 (256)
T cd06612          79 YCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNT  158 (256)
T ss_pred             cCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcccccc
Confidence            9987 888887542211                            11111           1111               


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                         ...|+|||.+ .+..++.++||||||+++|+|++|+.||....
T Consensus       159 ~~~~~~y~~PE~~-~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~  203 (256)
T cd06612         159 VIGTPFWMAPEVI-QEIGYNNKADIWSLGITAIEMAEGKPPYSDIH  203 (256)
T ss_pred             ccCCccccCHHHH-hcCCCCchhhHHHHHHHHHHHHhCCCCCCCcc
Confidence               1248999954 45568899999999999999999999998653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.88  E-value=3.6e-21  Score=155.17  Aligned_cols=145  Identities=25%  Similarity=0.400  Sum_probs=113.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--CCEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--GRYVYLV  118 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv  118 (218)
                      ++|...+.||.|++|.||++.+..++..+|+|.+..... ......+.+|++++++++||||+++++++..  .+.++++
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   79 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN-PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIA   79 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc-hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEE
Confidence            468999999999999999999988999999999875422 2445778999999999999999999998864  4579999


Q ss_pred             EecCCC-ChHHHhhhccc-----C--------------------------Cccc-----------cccccC---------
Q 041487          119 FEYLDL-DLGSFIRKHTI-----T--------------------------SIRP-----------HIKEVG---------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~-----~--------------------------~~~~-----------~~~~~g---------  146 (218)
                      |||+++ +|.+++.....     .                          ++.+           .+.++|         
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  159 (287)
T cd06621          80 MEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSL  159 (287)
T ss_pred             EEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccccc
Confidence            999987 88777543110     0                          1111           111221         


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                             ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       160 ~~~~~~~~~y~~pE~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (287)
T cd06621         160 AGTFTGTSFYMAPERI-QGKPYSITSDVWSLGLTLLEVAQNRFPFPPE  206 (287)
T ss_pred             cccccCCccccCHHHh-cCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence                   238899954 4556899999999999999999999999865

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.88  E-value=1.7e-21  Score=159.08  Aligned_cols=138  Identities=35%  Similarity=0.704  Sum_probs=105.8

Q ss_pred             EEEeeecCceEEEEEEEc--cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCCEEEEEEec
Q 041487           46 VEKIGQGVFGEVYKCLNL--ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGRYVYLVFEY  121 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~lv~E~  121 (218)
                      .+.||+|+||.||+|.++  .++..+|+|.+...    .....+.+|+.++++++||||+++++++.  .+...+++|||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT----GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY   81 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCC----CCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEec
Confidence            468999999999999965  36789999988633    22345778999999999999999999985  45679999999


Q ss_pred             CCCChHHHhhhcccC------------------------------------Ccccc---------------ccccC----
Q 041487          122 LDLDLGSFIRKHTIT------------------------------------SIRPH---------------IKEVG----  146 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~------------------------------------~~~~~---------------~~~~g----  146 (218)
                      ++++|.+++......                                    +++|.               +.++|    
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07868          82 AEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             cCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceec
Confidence            988887776432100                                    22221               12222    


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                       ..|+|||.+.....++.++||||+||++|+|++|++||.+.
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         162 FNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             cCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence                             23999997766666899999999999999999999999765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.88  E-value=2.4e-21  Score=160.43  Aligned_cols=152  Identities=31%  Similarity=0.585  Sum_probs=117.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----  112 (218)
                      ...++|++.+.||+|+||.||+|.+..++..||+|.+..........+.+.+|+.++++++|+||+++++++...     
T Consensus        14 ~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~   93 (345)
T cd07877          14 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE   93 (345)
T ss_pred             hccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccc
Confidence            346889999999999999999999988999999999875433334456788899999999999999999988543     


Q ss_pred             -CEEEEEEecCCCChHHHhhhcccC--------------------------Ccccc-----------ccccC--------
Q 041487          113 -RYVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH-----------IKEVG--------  146 (218)
Q Consensus       113 -~~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g--------  146 (218)
                       ...+++++++.++|.+++......                          ++++.           +.++|        
T Consensus        94 ~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~  173 (345)
T cd07877          94 FNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE  173 (345)
T ss_pred             cccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEeccccccccccc
Confidence             347899999877887765443211                          22221           11221        


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                             ..|+|||.+.....++.++|||||||++|+|++|+.||...+.
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~  223 (345)
T cd07877         174 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH  223 (345)
T ss_pred             ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                   2389999765545688999999999999999999999986643

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.88  E-value=2.7e-21  Score=153.91  Aligned_cols=146  Identities=25%  Similarity=0.482  Sum_probs=116.1

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      +|+..+.||+|++|.||++.+..++..+|+|.++......    ...+.+.+|+.++++++|+|++++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            4788899999999999999998999999999987543221    235678899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Cccc------------ccccc------------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRP------------HIKEV------------  145 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~------------~~~~~------------  145 (218)
                      ++||+.+ +|.+++......                           ++.+            ...++            
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~  160 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTG  160 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccccccccc
Confidence            9999987 888887653321                           1111            11111            


Q ss_pred             ----------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                ...|+|||.+ .+..++.++|+||+|+++|++++|+.||...+
T Consensus       161 ~~~~~~~~~~~~~~~~PE~~-~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~  212 (268)
T cd06630         161 AGEFQGQLLGTIAFMAPEVL-RGEQYGRSCDVWSVGCVIIEMATAKPPWNAEK  212 (268)
T ss_pred             CCccccccccccceeCHhHh-ccCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence                      1248999965 44558899999999999999999999997653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.87  E-value=2.8e-21  Score=162.69  Aligned_cols=142  Identities=20%  Similarity=0.358  Sum_probs=111.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc--CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      +...+|.+++.||+|+||.||+|....  .+..|++|.+...       ....+|+.+++.++||||+++++.+......
T Consensus        89 ~~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~  161 (392)
T PHA03207         89 VVRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-------KTPGREIDILKTISHRAIINLIHAYRWKSTV  161 (392)
T ss_pred             hccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-------ccHHHHHHHHHhcCCCCccceeeeEeeCCEE
Confidence            345579999999999999999997643  4678999987532       2356899999999999999999999999999


Q ss_pred             EEEEecCCCChHHHhhhcccC---------------------------Ccccc-----------ccccC-----------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT---------------------------SIRPH-----------IKEVG-----------  146 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g-----------  146 (218)
                      +++||++.++|.+++......                           ++++.           +.++|           
T Consensus       162 ~lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~  241 (392)
T PHA03207        162 CMVMPKYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDT  241 (392)
T ss_pred             EEEehhcCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCccccc
Confidence            999999998888887543221                           22221           12222           


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               ..|+|||. ..+..++.++|||||||++|+|++|+.||.+.
T Consensus       242 ~~~~~~~gt~~y~aPE~-~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  290 (392)
T PHA03207        242 PQCYGWSGTLETNSPEL-LALDPYCAKTDIWSAGLVLFEMSVKNVTLFGK  290 (392)
T ss_pred             ccccccccccCccCHhH-hcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence                     23899995 45556899999999999999999999999765

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.87  E-value=9.7e-22  Score=155.31  Aligned_cols=156  Identities=26%  Similarity=0.503  Sum_probs=122.8

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||++.++.++..+++|.+............+.+|+.+++.++|+||+++++.+......++++||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            58899999999999999999988999999999976554455567788999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhccc-----C--------------------------Cccccc-----------ccc-------------
Q 041487          122 LDL-DLGSFIRKHTI-----T--------------------------SIRPHI-----------KEV-------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~-----~--------------------------~~~~~~-----------~~~-------------  145 (218)
                      +++ +|.+++.....     .                          ++.+.+           .++             
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~  160 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKT  160 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccCCccc
Confidence            977 88888755211     0                          111111           111             


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                         ...|++||.+ .+..++.++|+||||+++|++++|+.||...+...+...+..
T Consensus       161 ~~~~~~~~~Pe~~-~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~  215 (256)
T cd08530         161 QIGTPHYMAPEVW-KGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQR  215 (256)
T ss_pred             ccCCccccCHHHH-CCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhc
Confidence               1238889954 455588899999999999999999999988766555444443

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.87  E-value=2.8e-21  Score=153.17  Aligned_cols=152  Identities=29%  Similarity=0.519  Sum_probs=116.5

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE-eCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT-TGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~  116 (218)
                      +...+|++.+.||+|+||.||++..  .+..+++|.++.    ....+.+.+|+.++++++|++++++++++. .....+
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~--~~~~~~~k~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   76 (256)
T cd05082           3 LNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKN----DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY   76 (256)
T ss_pred             ccHHhCeeeeeecccCCCeEEEEEE--cCCcEEEEEeCC----CchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceE
Confidence            4557899999999999999999976  578899998753    223567889999999999999999999764 556799


Q ss_pred             EEEecCCC-ChHHHhhhcccC-----------------------------Ccccc-----------ccccC---------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEVG---------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~g---------  146 (218)
                      ++|||+++ +|.+++......                             +++|.           ..++|         
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~  156 (256)
T cd05082          77 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ  156 (256)
T ss_pred             EEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccC
Confidence            99999986 999988654321                             22222           12222         


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                            ..|+|||. ..+..++.++|||||||++|+|++ |+.||...+...+...+
T Consensus       157 ~~~~~~~~y~aPE~-~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~  212 (256)
T cd05082         157 DTGKLPVKWTAPEA-LREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV  212 (256)
T ss_pred             CCCccceeecCHHH-HccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence                  13999995 455568899999999999999998 99999876554444433

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.87  E-value=1.9e-21  Score=154.20  Aligned_cols=149  Identities=25%  Similarity=0.385  Sum_probs=112.2

Q ss_pred             EEeeecCceEEEEEEEccCC---cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           47 EKIGQGVFGEVYKCLNLETG---KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~---~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      +.||+|+||.||+|.....+   ..+|+|.+...... ...+.+.+|+.+++.++|+|++++++++. ....+++|||++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCC
Confidence            46999999999999876544   78999998754332 35567889999999999999999999875 456899999998


Q ss_pred             C-ChHHHhhhcccC---------------------------Cccccc-----------ccc-------------------
Q 041487          124 L-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV-------------------  145 (218)
Q Consensus       124 ~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~-------------------  145 (218)
                      + +|.+++......                           ++++.+           .++                   
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~  158 (257)
T cd05060          79 LGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAG  158 (257)
T ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCc
Confidence            6 899988764421                           222211           111                   


Q ss_pred             --CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          146 --GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 --g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                        ...|+|||.+ .+..++.++||||||+++|++++ |++||...+...+...+..
T Consensus       159 ~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~  213 (257)
T cd05060         159 RWPLKWYAPECI-NYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLES  213 (257)
T ss_pred             cccccccCHHHh-cCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHc
Confidence              1248999955 55558999999999999999998 9999987655555444443

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.87  E-value=2.5e-21  Score=160.09  Aligned_cols=147  Identities=31%  Similarity=0.630  Sum_probs=114.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-------
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-------  112 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-------  112 (218)
                      ..+|.+.+.||.|+||.||+|.+..++..||+|.+....  ....+.+.+|+.+++.++||||+++++.+...       
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~--~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTD--PQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTED   81 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCC--CchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccc
Confidence            368999999999999999999999999999999986543  24456788999999999999999999876543       


Q ss_pred             -------CEEEEEEecCCCChHHHhhhcccC--------------------------Ccccc------------cccc--
Q 041487          113 -------RYVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH------------IKEV--  145 (218)
Q Consensus       113 -------~~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~------------~~~~--  145 (218)
                             ...+++|||++++|.+++......                          ++++.            ..++  
T Consensus        82 ~~~~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~  161 (342)
T cd07854          82 VGSLTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGL  161 (342)
T ss_pred             cccccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCccc
Confidence                   368999999988887776432211                          11111            1111  


Q ss_pred             -------------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -------------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -------------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                         ...|+|||.+.....++.++|||||||++|+|++|+.||...+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~  223 (342)
T cd07854         162 ARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH  223 (342)
T ss_pred             ceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                               1248999976666668899999999999999999999998653

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.87  E-value=2.4e-21  Score=156.81  Aligned_cols=146  Identities=32%  Similarity=0.580  Sum_probs=116.8

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|.+.+.||+|+||.||++....++..+++|.+...  .....+.+.+|+.+++.++|||++++++.+......++|+
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~--~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~   95 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQ--QQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVM   95 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccc--cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEE
Confidence            36899999999999999999998888999999998643  2233567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC--------------------------Cccc-----------cccccC---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT--------------------------SIRP-----------HIKEVG---------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~--------------------------~~~~-----------~~~~~g---------------  146 (218)
                      ||+++ +|.+++......                          ++++           .+.++|               
T Consensus        96 e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~  175 (293)
T cd06647          96 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM  175 (293)
T ss_pred             ecCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccccccc
Confidence            99987 888887653221                          1111           112222               


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                         ..|++||.+. ...++.++|+||||+++|++++|+.||...+
T Consensus       176 ~~~~~y~~PE~~~-~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~  219 (293)
T cd06647         176 VGTPYWMAPEVVT-RKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN  219 (293)
T ss_pred             cCChhhcCchhhc-cCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence               1389999654 4457899999999999999999999998663

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.87  E-value=1.6e-21  Score=156.67  Aligned_cols=151  Identities=28%  Similarity=0.478  Sum_probs=115.5

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +...+|...+.||+|+||.||++...     .++..+++|.++..  .....+.+.+|+.+++.++|+||+++++++...
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (280)
T cd05092           2 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTVLQHQHIVRFYGVCTEG   79 (280)
T ss_pred             CChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcC--CHHHHHHHHHHHHHHhcCCCCCCceEEEEEecC
Confidence            34577899999999999999999743     24567899987632  334456789999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc----------------C--------------------------Cccc---------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI----------------T--------------------------SIRP---------  140 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~----------------~--------------------------~~~~---------  140 (218)
                      ...+++|||+++ +|.+++.....                .                          +++|         
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~  159 (280)
T cd05092          80 RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGL  159 (280)
T ss_pred             CceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCC
Confidence            999999999986 88888765321                0                          1111         


Q ss_pred             --cccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcch
Q 041487          141 --HIKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDH  191 (218)
Q Consensus       141 --~~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~  191 (218)
                        ...++|                    ..|+|||.+ .+..++.++|||||||++|+|++ |.+||.......
T Consensus       160 ~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~  232 (280)
T cd05092         160 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI-LYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE  232 (280)
T ss_pred             CEEECCCCceeEcCCCceeecCCCccccccccCHHHh-ccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHH
Confidence              112222                    238999954 45558999999999999999999 999997654333

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.87  E-value=2.9e-21  Score=153.48  Aligned_cols=152  Identities=24%  Similarity=0.446  Sum_probs=116.1

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ++..++|++.+.||+|+||.||++... .+..+++|.+...   ....+.+.+|+.++++++|+|++++++.+.. ...+
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~iK~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~   76 (260)
T cd05073           2 EIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPG---SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIY   76 (260)
T ss_pred             cccccceeEEeEecCccceEEEEEEec-CCccEEEEecCCC---hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeE
Confidence            356788999999999999999999854 4567999987632   2234678899999999999999999999877 7789


Q ss_pred             EEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV----------  145 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~----------  145 (218)
                      ++|||+++ +|.+++......                             ++++.+           .++          
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  156 (260)
T cd05073          77 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE  156 (260)
T ss_pred             EEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCC
Confidence            99999986 999998653211                             112211           111          


Q ss_pred             ---------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 041487          146 ---------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSL  194 (218)
Q Consensus       146 ---------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~  194 (218)
                               ...|+|||.+ ....++.++|+|||||++|+++| |+.||...+...+..
T Consensus       157 ~~~~~~~~~~~~y~~PE~~-~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~  214 (260)
T cd05073         157 YTAREGAKFPIKWTAPEAI-NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIR  214 (260)
T ss_pred             cccccCCcccccccCHhHh-ccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence                     1238999954 45568899999999999999999 999998765444443

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.87  E-value=1.4e-21  Score=157.81  Aligned_cols=161  Identities=27%  Similarity=0.454  Sum_probs=121.7

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccC-----CcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLET-----GKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVL  109 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~  109 (218)
                      ..+..++|++.+.||+|+||.||++.....     ...+|+|.+.... .......+.+|+.+++++ +|+||+++++++
T Consensus         7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   85 (293)
T cd05053           7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA-TEKDLSDLVSEMEMMKMIGKHKNIINLLGVC   85 (293)
T ss_pred             cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC-CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            446678899999999999999999987643     3689999987432 223346688999999999 899999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhccc--------------C-----------------------------Ccccc----
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTI--------------T-----------------------------SIRPH----  141 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~--------------~-----------------------------~~~~~----  141 (218)
                      ...+.++++|||+.+ +|.+++.....              .                             +++|.    
T Consensus        86 ~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~  165 (293)
T cd05053          86 TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLV  165 (293)
T ss_pred             cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEE
Confidence            999999999999976 88888754210              0                             11111    


Q ss_pred             -------ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHH
Q 041487          142 -------IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLS  193 (218)
Q Consensus       142 -------~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~  193 (218)
                             ..++|                    ..|+|||.+ .+..++.++|||||||++|++++ |..||.........
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~  244 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL-FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELF  244 (293)
T ss_pred             cCCCeEEeCccccccccccccceeccCCCCCCccccCHHHh-ccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHH
Confidence                   11221                    238999954 45558999999999999999998 99999877655555


Q ss_pred             HHHHH
Q 041487          194 LIVRY  198 (218)
Q Consensus       194 ~~~~~  198 (218)
                      .....
T Consensus       245 ~~~~~  249 (293)
T cd05053         245 KLLKE  249 (293)
T ss_pred             HHHHc
Confidence            54443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-23  Score=175.14  Aligned_cols=156  Identities=25%  Similarity=0.407  Sum_probs=120.3

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      |.=+..||.|+||.||-|.+..+.+.||||.+.-.- ...+..+.+..|+..|+++.|||++.+.++|......|+||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            555678999999999999999999999999875322 2335578899999999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC----------------------------Ccc------------------------ccccccCCc-
Q 041487          122 LDLDLGSFIRKHTIT----------------------------SIR------------------------PHIKEVGSP-  148 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~----------------------------~~~------------------------~~~~~~g~~-  148 (218)
                      |-|+-.|.+.-+...                            +++                        |.+++.|+| 
T Consensus       108 ClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGTPy  187 (948)
T KOG0577|consen  108 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGTPY  187 (948)
T ss_pred             HhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCchhcccCCcc
Confidence            977666555332211                            222                        223445655 


Q ss_pred             ccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHH
Q 041487          149 YKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRY  198 (218)
Q Consensus       149 y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~  198 (218)
                      |||||++..  .+.|+-++||||||++..|++..++|+-.+ -...+..|-+.
T Consensus       188 wMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQN  240 (948)
T KOG0577|consen  188 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN  240 (948)
T ss_pred             ccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhc
Confidence            799997543  466999999999999999999999886544 44444554443

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.87  E-value=2.1e-21  Score=153.21  Aligned_cols=148  Identities=28%  Similarity=0.494  Sum_probs=114.0

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-C
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-D  125 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~  125 (218)
                      +.||+|++|.||++.+.. +..|++|.++..... .....+.+|+.+++.++|+||+++++++......+++|||+.+ +
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   78 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPP-DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGS   78 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCc
Confidence            368999999999999877 999999988754332 3456789999999999999999999999999999999999976 8


Q ss_pred             hHHHhhhcccC----------------------------Cccccc-----------cccC--------------------
Q 041487          126 LGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------------------  146 (218)
Q Consensus       126 L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------------------  146 (218)
                      |.+++......                            +++|.+           .++|                    
T Consensus        79 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~  158 (251)
T cd05041          79 LLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIP  158 (251)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcce
Confidence            88887543211                            122211           1111                    


Q ss_pred             CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                      ..|+|||.+ .+..++.++|+|||||++|+++| |..||...........+.
T Consensus       159 ~~y~~PE~~-~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~  209 (251)
T cd05041         159 IKWTAPEAL-NYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIE  209 (251)
T ss_pred             eccCChHhh-ccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHh
Confidence            128999954 45568999999999999999999 899998776555555444

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.87  E-value=1.9e-21  Score=157.13  Aligned_cols=153  Identities=25%  Similarity=0.424  Sum_probs=116.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ...+|.+.+.||+|+||.||+|....     ++..+++|.+...  .....+.+.+|+.++++++|+||+++++++....
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (291)
T cd05094           3 KRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP--TLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD   80 (291)
T ss_pred             chHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCc--cHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC
Confidence            45679999999999999999998543     3456888887532  2233467889999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-------------------------------------------Cccccc-------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRPHI-------  142 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~~~-------  142 (218)
                      ..++||||+++ +|.+++..+...                                           +++|.+       
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~  160 (291)
T cd05094          81 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANL  160 (291)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCC
Confidence            99999999976 999998654210                                           222221       


Q ss_pred             ----cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 041487          143 ----KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSL  194 (218)
Q Consensus       143 ----~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~  194 (218)
                          .++|                    ..|+|||.+ .+..++.++|||||||++|+|+| |+.||..........
T Consensus       161 ~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~  236 (291)
T cd05094         161 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI-MYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIE  236 (291)
T ss_pred             cEEECCCCcccccCCCceeecCCCCCcceeecChHHh-ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence                1222                    238999954 45568899999999999999999 999997765444433

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.87  E-value=3.6e-21  Score=152.32  Aligned_cols=151  Identities=27%  Similarity=0.434  Sum_probs=115.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ...+|++.+.||+|+||.||++... .+..+++|.++....   ....+.+|+.+++.++||+++++++++......+++
T Consensus         2 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v   77 (256)
T cd05112           2 HPSELTLVQEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAM---SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLV   77 (256)
T ss_pred             ChhHeEEEeeecCcccceEEEEEEe-CCCeEEEEECCCCCC---CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEE
Confidence            3568999999999999999999874 477899998764322   235688999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG------------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g------------  146 (218)
                      |||+.+ +|.+++......                            ++++.+           .++|            
T Consensus        78 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~  157 (256)
T cd05112          78 FEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTS  157 (256)
T ss_pred             EEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCcccc
Confidence            999987 888887543211                            111111           1111            


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~  194 (218)
                             ..|+|||.+ .++.++.++||||||+++|++++ |+.||.......+..
T Consensus       158 ~~~~~~~~~~~aPe~~-~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~  212 (256)
T cd05112         158 STGTKFPVKWSSPEVF-SFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVE  212 (256)
T ss_pred             cCCCccchhhcCHhHh-ccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHH
Confidence                   248999954 45558899999999999999998 999998665444333

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.87  E-value=9.1e-23  Score=160.20  Aligned_cols=167  Identities=33%  Similarity=0.634  Sum_probs=133.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCC----cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-C
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETG----KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-G  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~----~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~  112 (218)
                      -....|+.++.||+|.||.||+|..+.++    ..+|||.++............-+|+.+++.++|||++.+..+|.. +
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            44578999999999999999999765443    378999998655555667788899999999999999999999876 8


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC--------------------------------Ccc---------------cccccc
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT--------------------------------SIR---------------PHIKEV  145 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~--------------------------------~~~---------------~~~~~~  145 (218)
                      ..++++.||.+.+|.+.|+-+...                                +.+               .++.++
T Consensus       101 ~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDl  180 (438)
T KOG0666|consen  101 KKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADL  180 (438)
T ss_pred             ceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecc
Confidence            899999999999998888765432                                222               223333


Q ss_pred             CCc---------------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC----------CcchHHH
Q 041487          146 GSP---------------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG----------KKDHLSL  194 (218)
Q Consensus       146 g~~---------------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~----------~~~~~~~  194 (218)
                      |.+                     |.|||.+.+...|+.+.|||+.||++.||+|-++.|.+.          ..+.+.+
T Consensus       181 GlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~r  260 (438)
T KOG0666|consen  181 GLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDR  260 (438)
T ss_pred             cHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHH
Confidence            332                     999999888888999999999999999999999999765          2345667


Q ss_pred             HHHHhcccCc
Q 041487          195 IVRYFTALTN  204 (218)
Q Consensus       195 ~~~~~~~~~~  204 (218)
                      +.+.+|.|+.
T Consensus       261 If~vLG~Pt~  270 (438)
T KOG0666|consen  261 IFEVLGTPTD  270 (438)
T ss_pred             HHHHcCCCcc
Confidence            7777666643

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.87  E-value=2.3e-21  Score=155.80  Aligned_cols=145  Identities=26%  Similarity=0.458  Sum_probs=113.1

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      |++.+.||.|+||.||++.+..++..+++|.+...  .....+.+.+|+.+++.++|+|++++++.+..+...++++||+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~   84 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK--SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   84 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC--CHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEec
Confidence            67889999999999999999888999999998532  2234567888999999999999999999999999999999999


Q ss_pred             CC-ChHHHhhhccc--C--------------------------Cccccc-----------cccC----------------
Q 041487          123 DL-DLGSFIRKHTI--T--------------------------SIRPHI-----------KEVG----------------  146 (218)
Q Consensus       123 ~~-~L~~~~~~~~~--~--------------------------~~~~~~-----------~~~g----------------  146 (218)
                      ++ +|..++.....  .                          ++++.+           .++|                
T Consensus        85 ~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~  164 (282)
T cd06643          85 AGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFI  164 (282)
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccccccccccccccc
Confidence            87 76666543111  0                          222211           1221                


Q ss_pred             --CcccCccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 --SPYKAPESRI----RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 --~~y~aPE~~~----~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                        ..|+|||.+.    ....++.++|||||||++|+|++|++||...+.
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~  213 (282)
T cd06643         165 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNP  213 (282)
T ss_pred             ccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCH
Confidence              2399999653    344578899999999999999999999987643

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.87  E-value=5.1e-21  Score=154.09  Aligned_cols=149  Identities=31%  Similarity=0.533  Sum_probs=119.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ....|.+.+.||+|++|.||++.+..++..+++|.++....   ..+.+.+|+.+++.++|+|++++++.+......+++
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   93 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ---NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVV   93 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch---hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEE
Confidence            34568899999999999999999988899999999875432   456788999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcc-cC---------------------------Ccccc-----------cccc-------------
Q 041487          119 FEYLDL-DLGSFIRKHT-IT---------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~-~~---------------------------~~~~~-----------~~~~-------------  145 (218)
                      +||+++ +|.+++.... ..                           ++++.           +.++             
T Consensus        94 ~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~  173 (286)
T cd06614          94 MEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKR  173 (286)
T ss_pred             EeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhh
Confidence            999995 9999988764 11                           11111           1111             


Q ss_pred             ----C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          146 ----G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       146 ----g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                          + ..|++||.+ .+..++.++|+||||+++|++++|+.||...+...
T Consensus       174 ~~~~~~~~y~~PE~~-~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~  223 (286)
T cd06614         174 NSVVGTPYWMAPEVI-KRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR  223 (286)
T ss_pred             ccccCCcccCCHhHh-cCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                1 238999954 45568999999999999999999999998764443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.87  E-value=4.9e-21  Score=158.41  Aligned_cols=151  Identities=34%  Similarity=0.637  Sum_probs=117.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC----
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR----  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----  113 (218)
                      -..++|++.+.||+|++|.||++.+..++..||+|.+..........+.+.+|+.+++.++||||+++++++....    
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07880          12 EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDR   91 (343)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccc
Confidence            3578899999999999999999999989999999998654333444567889999999999999999999987543    


Q ss_pred             --EEEEEEecCCCChHHHhhhcccC--------------------------Ccccc-----------ccccC--------
Q 041487          114 --YVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH-----------IKEVG--------  146 (218)
Q Consensus       114 --~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g--------  146 (218)
                        ..++||||+..+|.+++......                          +++|.           ..++|        
T Consensus        92 ~~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  171 (343)
T cd07880          92 FHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSE  171 (343)
T ss_pred             cceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccccccccC
Confidence              46999999977887776542211                          12211           12222        


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             ..|+|||.+.....++.++|+||||+++|++++|+.||...+
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~  220 (343)
T cd07880         172 MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHD  220 (343)
T ss_pred             ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                   238999976654558899999999999999999999998764

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.87  E-value=7.1e-21  Score=153.06  Aligned_cols=140  Identities=24%  Similarity=0.436  Sum_probs=104.7

Q ss_pred             EeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHh---hCCCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           48 KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLK---ELEHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~---~l~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      .||+|+||.||++.+..++..+|+|.+.+..... .......+|..+++   ...||+++.+++.+...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999999999998899999999987554322 22233444544333   3479999999999999999999999998


Q ss_pred             C-ChHHHhhhcccC---------------------------Ccccc-----------cccc----------------CCc
Q 041487          124 L-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV----------------GSP  148 (218)
Q Consensus       124 ~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~----------------g~~  148 (218)
                      + +|.+++..+...                           ++++.           ..++                ...
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  160 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG  160 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCcC
Confidence            7 888887654321                           22221           1222                224


Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      |+|||.+..+..++.++||||+||++|+|++|..||...
T Consensus       161 y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  199 (279)
T cd05633         161 YMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (279)
T ss_pred             ccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCC
Confidence            999997655566889999999999999999999999765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.87  E-value=3.1e-21  Score=156.84  Aligned_cols=152  Identities=28%  Similarity=0.427  Sum_probs=117.0

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVL  109 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~  109 (218)
                      ..+..++|.+.+.||+|+||.||++...     ..+..+|+|.++... .....+.+.+|+.+++++ +|+||+++++.+
T Consensus        30 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  108 (302)
T cd05055          30 WEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTA-HSSEREALMSELKIMSHLGNHENIVNLLGAC  108 (302)
T ss_pred             ccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccC-ChHHHHHHHHHHHHHHhccCCCCcceEEEEE
Confidence            3466778999999999999999999752     345689999886432 233356789999999999 799999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhccc---C--------------------------Cccccc-----------ccc---
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPHI-----------KEV---  145 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~~-----------~~~---  145 (218)
                      ...+..+++|||+.+ +|.+++.....   .                          +++|.+           .++   
T Consensus       109 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~  188 (302)
T cd05055         109 TIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLA  188 (302)
T ss_pred             ecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCccc
Confidence            999999999999986 89888865321   0                          122211           111   


Q ss_pred             -----------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCc
Q 041487          146 -----------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKK  189 (218)
Q Consensus       146 -----------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~  189 (218)
                                       ...|+|||.+ .+..++.++||||+||++|++++ |..||.....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~  249 (302)
T cd05055         189 RDIMNDSNYVVKGNARLPVKWMAPESI-FNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV  249 (302)
T ss_pred             ccccCCCceeecCCCCcccccCCHhhh-ccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc
Confidence                             1238999955 44558999999999999999998 9999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.87  E-value=3.5e-21  Score=159.21  Aligned_cols=149  Identities=34%  Similarity=0.620  Sum_probs=115.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------C
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------R  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~  113 (218)
                      ..+|.+.+.||+|+||.||+|.+..++..+|+|.+.+..........+.+|+.+++.++|+||+++++++...      .
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            5689999999999999999999988999999999876544444456788999999999999999999998643      3


Q ss_pred             EEEEEEecCCCChHHHhhhccc-------------------------CCcccc-----------ccccC-----------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTI-------------------------TSIRPH-----------IKEVG-----------  146 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~-------------------------~~~~~~-----------~~~~g-----------  146 (218)
                      ..++++||+..+|.++......                         .++++.           ..++|           
T Consensus        94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~  173 (342)
T cd07879          94 DFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTG  173 (342)
T ss_pred             eEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCC
Confidence            5699999997766654321100                         022221           12222           


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ..|+|||.+.....++.++|||||||++|+|++|+.||.+.+
T Consensus       174 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~  219 (342)
T cd07879         174 YVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  219 (342)
T ss_pred             ceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                238999976655668899999999999999999999998764

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.87  E-value=2.7e-21  Score=154.34  Aligned_cols=145  Identities=24%  Similarity=0.457  Sum_probs=111.7

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe------CC
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT------GR  113 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~------~~  113 (218)
                      +.|++.+.||+|+||.||+|....++..+|+|.+...   ......+.+|+.+++++ +|+|++++++.+..      ..
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~---~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT---GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD   82 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC---CccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence            4588889999999999999999999999999998743   23346788999999998 79999999999864      35


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccc-----------cccccC------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRP-----------HIKEVG------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~-----------~~~~~g------  146 (218)
                      .++++|||+.+ +|.+++......                             ++.+           .+.++|      
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~  162 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  162 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceecc
Confidence            68999999987 888877653211                             1111           112222      


Q ss_pred             ------------CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ------------SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ------------~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                  ..|+|||.+..    ...++.++|||||||++|+|++|+.||....
T Consensus       163 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~  220 (272)
T cd06637         163 RTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH  220 (272)
T ss_pred             cccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccC
Confidence                        13899996642    3347889999999999999999999997653

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.87  E-value=9e-22  Score=158.18  Aligned_cols=159  Identities=23%  Similarity=0.396  Sum_probs=118.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      +...+|++.+.||+|+||.||+|+...     .+..||+|.++... .....+.+.+|+.++..++||||+++++++...
T Consensus         2 i~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~   80 (283)
T cd05091           2 INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA-EGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKE   80 (283)
T ss_pred             CCHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC-CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC
Confidence            345678899999999999999998753     35789999987432 223356788999999999999999999999998


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc-------------------------------------------CCcccc-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI-------------------------------------------TSIRPH-------  141 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~-------------------------------------------~~~~~~-------  141 (218)
                      ...++++||+.+ +|.+++.....                                           .+++|.       
T Consensus        81 ~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~  160 (283)
T cd05091          81 QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDK  160 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCC
Confidence            999999999986 88877642100                                           012221       


Q ss_pred             ----ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          142 ----IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       142 ----~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                          ..++|                    ..|+|||.+. ...++.++|||||||++|+|++ |..||.+.....+...+
T Consensus       161 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i  239 (283)
T cd05091         161 LNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIM-YGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMI  239 (283)
T ss_pred             CceEecccccccccccchheeeccCccCCccccCHHHHh-cCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence                12222                    2499999654 4448999999999999999998 88999877555555444


Q ss_pred             HH
Q 041487          197 RY  198 (218)
Q Consensus       197 ~~  198 (218)
                      ..
T Consensus       240 ~~  241 (283)
T cd05091         240 RN  241 (283)
T ss_pred             Hc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.87  E-value=3.9e-21  Score=154.64  Aligned_cols=147  Identities=25%  Similarity=0.492  Sum_probs=111.8

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE-----eC
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT-----TG  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~-----~~  112 (218)
                      ..++|++.+.||+|+||.||+|.+..++..+|+|.+...   ......+.+|+.+++++ +|+|++++++++.     .+
T Consensus        16 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~---~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~   92 (286)
T cd06638          16 PSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPI---HDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNG   92 (286)
T ss_pred             cccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccc---cchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCC
Confidence            457899999999999999999999989999999987532   22235678899999999 7999999999873     45


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc----C---------------------------Ccccc-----------cccc----
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI----T---------------------------SIRPH-----------IKEV----  145 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~----~---------------------------~~~~~-----------~~~~----  145 (218)
                      ..++++|||+++ +|.+++.....    .                           ++++.           ..++    
T Consensus        93 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~  172 (286)
T cd06638          93 DQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSA  172 (286)
T ss_pred             CeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCcee
Confidence            679999999987 88877642110    0                           11111           1122    


Q ss_pred             -------------C-CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -------------G-SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -------------g-~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                   | ..|+|||.+..    ...++.++|||||||++|+|++|+.||....
T Consensus       173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~  233 (286)
T cd06638         173 QLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLH  233 (286)
T ss_pred             ecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCc
Confidence                         1 23999996542    2447889999999999999999999997653

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.87  E-value=3.5e-21  Score=154.67  Aligned_cols=146  Identities=24%  Similarity=0.461  Sum_probs=112.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE------eC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT------TG  112 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~------~~  112 (218)
                      .+.|++.+.||.|+||.||+|.+..+++.+|+|.+...   ......+..|+.+++++ +|+|++++++++.      ..
T Consensus        15 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~---~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   91 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT---EDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHD   91 (282)
T ss_pred             hhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC---hHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCC
Confidence            46799999999999999999999999999999998643   22335678889999998 7999999999985      35


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccc-----------cccccC-----
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRP-----------HIKEVG-----  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~-----------~~~~~g-----  146 (218)
                      ..++++|||+++ +|.+++......                             ++++           .+.++|     
T Consensus        92 ~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~  171 (282)
T cd06636          92 DQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  171 (282)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhh
Confidence            679999999987 888877543211                             1111           111221     


Q ss_pred             -------------CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------------SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------------~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                   ..|+|||.+..    ...++.++|||||||++|+|++|+.||....
T Consensus       172 ~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~  230 (282)
T cd06636         172 DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMH  230 (282)
T ss_pred             hccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccC
Confidence                         23899996542    3447889999999999999999999997653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.87  E-value=2.5e-21  Score=158.98  Aligned_cols=148  Identities=36%  Similarity=0.634  Sum_probs=117.7

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-----EEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-----YVY  116 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~  116 (218)
                      +|++.+.||+|++|.||+|++..++..+++|.+..........+.+.+|+.+++.++|+||+++++++....     .+|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            589999999999999999999888999999998765443455678999999999999999999999987664     799


Q ss_pred             EEEecCCCChHHHhhhcccC---------------------------Cccccc-----------cc--------------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI-----------KE--------------  144 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~-----------~~--------------  144 (218)
                      ++|||+..+|.+++......                           ++++.+           .+              
T Consensus        81 lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~  160 (330)
T cd07834          81 IVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEK  160 (330)
T ss_pred             EEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccccccc
Confidence            99999998888777553221                           111111           11              


Q ss_pred             ------c-CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          145 ------V-GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       145 ------~-g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                            . ...|+|||.+.....++.++|+||||+++|+|++|+.||.+.+.
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~  212 (330)
T cd07834         161 GFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDY  212 (330)
T ss_pred             ccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCH
Confidence                  1 12389999665554689999999999999999999999987743

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.87  E-value=4.1e-21  Score=152.61  Aligned_cols=150  Identities=27%  Similarity=0.467  Sum_probs=112.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|.+...||+|++|.||+|..... ..+++|.+...   ....+.+.+|+.++++++|++++++++++. ....+++
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~-~~~~lK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v   78 (260)
T cd05069           4 PRESLRLDVKLGQGCFGEVWMGTWNGT-TKVAIKTLKPG---TMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIV   78 (260)
T ss_pred             ChHHeeeeeeecCcCCCeEEEEEEcCC-ceEEEEEcccC---CccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEE
Confidence            346799999999999999999987543 46999987532   233467889999999999999999998875 4568999


Q ss_pred             EecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC-----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g-----------  146 (218)
                      |||+.+ +|.+++......                             ++++.+           .++|           
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~  158 (260)
T cd05069          79 TEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYT  158 (260)
T ss_pred             EEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCccc
Confidence            999987 899988653211                             111111           1111           


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~  194 (218)
                              ..|+|||. ..+..++.++||||||+++|+++| |+.||..........
T Consensus       159 ~~~~~~~~~~y~~Pe~-~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~  214 (260)
T cd05069         159 ARQGAKFPIKWTAPEA-ALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLE  214 (260)
T ss_pred             ccCCCccchhhCCHHH-hccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence                    23999994 445568999999999999999999 999998775444333

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.87  E-value=3.8e-21  Score=154.29  Aligned_cols=159  Identities=20%  Similarity=0.398  Sum_probs=119.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-C
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-G  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~  112 (218)
                      +..++|++.+.||+|+||.||+|.+..    .+..|++|.+... ......+.+.+|+.++++++|+|++++++++.. +
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   81 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH-ASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG   81 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            456789999999999999999999865    2578999987632 233446778899999999999999999998764 5


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc---------C--------------------------Ccccc-----------cccc
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI---------T--------------------------SIRPH-----------IKEV  145 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~---------~--------------------------~~~~~-----------~~~~  145 (218)
                      ...++++||+++ +|.+++.....         .                          ++++.           +.++
T Consensus        82 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~  161 (280)
T cd05043          82 EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDN  161 (280)
T ss_pred             CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCC
Confidence            779999999985 99888765311         0                          11111           1111


Q ss_pred             C--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          146 G--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                      |                    ..|+|||.+ .+..++.++|||||||++|++++ |+.||...+...+...+..
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~-~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~  234 (280)
T cd05043         162 ALSRDLFPMDYHCLGDNENRPVKWMALESL-VNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKD  234 (280)
T ss_pred             CCcccccCCceEEeCCCCCcchhccCHHHH-hcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHc
Confidence            1                    238999955 45558999999999999999999 9999987765555554443

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.87  E-value=3.2e-21  Score=153.98  Aligned_cols=152  Identities=25%  Similarity=0.465  Sum_probs=114.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      +...+|++.+.||+|+||.||+|.+...   ...+++|...... .....+.+.+|+.++++++|+|++++++++.. ..
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~   80 (270)
T cd05056           3 IQREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCT-SPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NP   80 (270)
T ss_pred             echhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcC-CHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CC
Confidence            3456799999999999999999987543   3568999876432 23345688999999999999999999998875 45


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      .+++|||+++ +|.+++......                            ++++.+           .++|        
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~  160 (270)
T cd05056          81 VWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDE  160 (270)
T ss_pred             cEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccc
Confidence            7899999986 899988653321                            111111           1111        


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchH
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHL  192 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~  192 (218)
                                 ..|+|||. .....++.++||||||+++|++++ |..||........
T Consensus       161 ~~~~~~~~~~~~~y~aPE~-~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~  217 (270)
T cd05056         161 SYYKASKGKLPIKWMAPES-INFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDV  217 (270)
T ss_pred             cceecCCCCccccccChhh-hccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence                       24999995 455568999999999999999997 9999987644433

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.87  E-value=2e-21  Score=160.16  Aligned_cols=149  Identities=36%  Similarity=0.673  Sum_probs=116.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe--CCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT--GRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~--~~~~  115 (218)
                      ..++|++.+.||+|+||.||+|.+..++..+|+|.+............+.+|+.+++++ +|+||+++++++..  ...+
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            35779999999999999999999988899999998864433333445677899999999 99999999999864  4478


Q ss_pred             EEEEecCCCChHHHhhhcccC--------------------------Ccccc-----------cccc-------------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~-----------~~~~-------------  145 (218)
                      ++||||++++|.+++......                          ++++.           ..++             
T Consensus        85 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~  164 (337)
T cd07852          85 YLVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENP  164 (337)
T ss_pred             EEEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccc
Confidence            999999998888877553211                          11111           1111             


Q ss_pred             ---------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ---------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ---------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               | ..|+|||.+.....++.++||||||+++|+|++|+.||.+.
T Consensus       165 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~  216 (337)
T cd07852         165 ENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGT  216 (337)
T ss_pred             cCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCC
Confidence                     1 13899997766666889999999999999999999999865

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.87  E-value=2.2e-21  Score=156.43  Aligned_cols=157  Identities=31%  Similarity=0.508  Sum_probs=118.8

Q ss_pred             hccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ..++|++.+.||+|+||.||+|.+..     ++..+|+|.+.... .....+.+.+|+.++++++|||++++++++..+.
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~   81 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-SADMQADFQREAALMAEFDHPNIVKLLGVCAVGK   81 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc-CHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC
Confidence            45779999999999999999998743     56789999986432 2233467889999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-------------------------------------------------Cccc---
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------------SIRP---  140 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------------~~~~---  140 (218)
                      ..+++|||+++ +|.+++......                                                 ++++   
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~ni  161 (288)
T cd05050          82 PMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNC  161 (288)
T ss_pred             ccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhhe
Confidence            99999999987 898887642110                                                 1111   


Q ss_pred             --------cccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcch
Q 041487          141 --------HIKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDH  191 (218)
Q Consensus       141 --------~~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~  191 (218)
                              .+.++|                    ..|+|||.+ .+..++.++|||||||++|+|++ |..||.+.....
T Consensus       162 l~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~  240 (288)
T cd05050         162 LVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESI-FYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE  240 (288)
T ss_pred             EecCCCceEECccccceecccCccccccCCCccChhhcCHHHH-hcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence                    112222                    139999954 45568999999999999999998 888997765554


Q ss_pred             HHHHHH
Q 041487          192 LSLIVR  197 (218)
Q Consensus       192 ~~~~~~  197 (218)
                      ....+.
T Consensus       241 ~~~~~~  246 (288)
T cd05050         241 VIYYVR  246 (288)
T ss_pred             HHHHHh
Confidence            444333

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=5.5e-21  Score=152.38  Aligned_cols=145  Identities=26%  Similarity=0.444  Sum_probs=112.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC------
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG------  112 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~------  112 (218)
                      .++|++.+.||.|++|.||+|.++.+++.+++|.+....   ...+.+.+|+.+++++ +|+|++++++++...      
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE---DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc---hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            478999999999999999999998889999999987432   2346788999999999 799999999999654      


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcc----cC---------------------------Ccccc-----------ccccC---
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHT----IT---------------------------SIRPH-----------IKEVG---  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~----~~---------------------------~~~~~-----------~~~~g---  146 (218)
                      ..++++|||+++ +|.+++....    ..                           ++.+.           ..++|   
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~  161 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSA  161 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccce
Confidence            459999999997 8888765422    10                           11111           11121   


Q ss_pred             ---------------CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------------SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------------~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                     ..|+|||.+..    ...++.++|||||||++|++++|+.||...
T Consensus       162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  221 (275)
T cd06608         162 QLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDM  221 (275)
T ss_pred             ecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcccc
Confidence                           13899996543    234678999999999999999999999765

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.87  E-value=7.3e-21  Score=152.59  Aligned_cols=140  Identities=29%  Similarity=0.435  Sum_probs=109.9

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-Ch
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DL  126 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L  126 (218)
                      ||+|+||.||+|.++.++..+++|.+...... ....+.+..|+.+++.++||+++++++.+...+..|++|||+++ +|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999999889999999998754322 23455677899999999999999999999999999999999986 89


Q ss_pred             HHHhhhcccC-----------------------------Ccccc-----------ccccC-----------------Ccc
Q 041487          127 GSFIRKHTIT-----------------------------SIRPH-----------IKEVG-----------------SPY  149 (218)
Q Consensus       127 ~~~~~~~~~~-----------------------------~~~~~-----------~~~~g-----------------~~y  149 (218)
                      .+++......                             ++.+.           ..++|                 ..|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y  160 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGY  160 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCc
Confidence            8887654311                             11111           11221                 248


Q ss_pred             cCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          150 KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       150 ~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                      +|||.+. +..++.++|+||||+++|+|++|+.||.....
T Consensus       161 ~~PE~~~-~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  199 (277)
T cd05577         161 MAPEVLQ-GEVYDFSVDWFALGCTLYEMIAGRSPFRQRKE  199 (277)
T ss_pred             CCHHHhc-CCCCCchhhhHHHHHHHHHHhhCCCCCCCCcc
Confidence            9999654 44488999999999999999999999977643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.87  E-value=8.1e-21  Score=150.90  Aligned_cols=139  Identities=24%  Similarity=0.468  Sum_probs=111.5

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-Ch
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DL  126 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L  126 (218)
                      ||.|++|.||+|++..++..+++|.+.+... .....+.+.+|+.+++.++||||+++++.+..+...++++||+++ +|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            6899999999999988899999999976543 234567899999999999999999999999999999999999986 99


Q ss_pred             HHHhhhcccC---------------------------Cccccc-----------ccc-----------------CCcccC
Q 041487          127 GSFIRKHTIT---------------------------SIRPHI-----------KEV-----------------GSPYKA  151 (218)
Q Consensus       127 ~~~~~~~~~~---------------------------~~~~~~-----------~~~-----------------g~~y~a  151 (218)
                      .+++......                           ++++.+           .++                 ...|++
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~  160 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVA  160 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCccC
Confidence            9888654321                           111111           111                 223899


Q ss_pred             cccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          152 PESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       152 PE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                      ||. ..+..++.++|+||+|+++|++++|..||...+
T Consensus       161 PE~-~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  196 (262)
T cd05572         161 PEI-ILNKGYDFSVDYWSLGILLYELLTGRPPFGEDD  196 (262)
T ss_pred             hhH-hcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCC
Confidence            995 445558999999999999999999999998765

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.87  E-value=3.5e-21  Score=153.74  Aligned_cols=155  Identities=23%  Similarity=0.397  Sum_probs=113.2

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCc--EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------CCE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGK--KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------GRY  114 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~  114 (218)
                      +.+.+.||+|+||.||+|+....+.  .+|+|.++.........+.+.+|+.+++.++|+||+++++.+..      ...
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence            3567899999999999999876665  68999987654445556788899999999999999999998642      235


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------------Ccccc-----------ccccC---
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------------SIRPH-----------IKEVG---  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------------~~~~~-----------~~~~g---  146 (218)
                      .+++|||+.+ +|.+++......                                 +++|.           +.++|   
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  160 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSK  160 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCccc
Confidence            7899999986 888776421100                                 12221           12222   


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                       ..|++||.. .+..++.++|||||||++|++++ |+.||.......+...++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~  229 (272)
T cd05075         161 KIYNGDYYRQGRIAKMPVKWIAIESL-ADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQ  229 (272)
T ss_pred             ccCcccceecCCcccCCcccCCHHHc-cCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHc
Confidence                             138889954 44558999999999999999999 8999987655554444443

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.87  E-value=3.9e-21  Score=151.63  Aligned_cols=147  Identities=31%  Similarity=0.492  Sum_probs=111.1

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-C
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-D  125 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~  125 (218)
                      +.||+|+||.||+|.. .++..+|+|.+.... .......+.+|+.+++.++|||++++++++......+++|||+++ +
T Consensus         1 ~~ig~g~~g~vy~~~~-~~~~~~a~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   78 (250)
T cd05085           1 ELLGKGNFGEVFKGTL-KDKTPVAVKTCKEDL-PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGD   78 (250)
T ss_pred             CccCCCCCceEEEEEe-cCCcEEEEEecCCcC-CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCc
Confidence            3689999999999985 468899999876432 223345688999999999999999999999999999999999986 8


Q ss_pred             hHHHhhhcccC----------------------------Ccccc-----------ccccC-------------------C
Q 041487          126 LGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------------------S  147 (218)
Q Consensus       126 L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------------------~  147 (218)
                      |.+++......                            ++++.           ..++|                   .
T Consensus        79 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~  158 (250)
T cd05085          79 FLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPI  158 (250)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcc
Confidence            88887543211                            12221           12222                   1


Q ss_pred             cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       148 ~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                      .|+|||.+ ....++.++||||||+++|++++ |..||...........+
T Consensus       159 ~y~aPE~~-~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~  207 (250)
T cd05085         159 KWTAPEAL-NYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQV  207 (250)
T ss_pred             cccCHHHh-ccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence            39999955 45558899999999999999999 99999876544443333

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.87  E-value=4.6e-21  Score=153.83  Aligned_cols=160  Identities=21%  Similarity=0.338  Sum_probs=120.3

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCc----EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .+...+|++++.||+|+||.||+|....++.    .||+|.++.. ......+.+.+|+.+++.+.|+|++++++++.. 
T Consensus         3 ~l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-   80 (279)
T cd05109           3 ILKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLREN-TSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-   80 (279)
T ss_pred             ccchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCC-CCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-
Confidence            4567889999999999999999999776665    4899988643 233345678899999999999999999999865 


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g------  146 (218)
                      ...++++||+++ +|.+++......                            +++|.+           .++|      
T Consensus        81 ~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~  160 (279)
T cd05109          81 STVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLD  160 (279)
T ss_pred             CCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecc
Confidence            457789999986 888887653221                            222221           2222      


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHh
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYF  199 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~  199 (218)
                                    ..|+|||... +..++.++|||||||++||+++ |..||.......+...+...
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~  227 (279)
T cd05109         161 IDETEYHADGGKVPIKWMALESIL-HRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKG  227 (279)
T ss_pred             cccceeecCCCccchhhCCHHHhc-cCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCC
Confidence                          2389999654 4458999999999999999999 99999877666665555543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.5e-20  Score=148.29  Aligned_cols=146  Identities=35%  Similarity=0.576  Sum_probs=118.0

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||++++..++..+++|.+..........+.+.+|+.++++++|++++++++++..+...+++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            48899999999999999999988999999999986654445667899999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc-----------------
Q 041487          122 LDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV-----------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~-----------------  145 (218)
                      +++ +|.+++......                           ++++.+           .++                 
T Consensus        81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~  160 (254)
T cd06627          81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVV  160 (254)
T ss_pred             CCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccc
Confidence            987 888887654221                           111111           111                 


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                       ...|+|||.+.. ..++.++||||+|+++|++++|+.||...+
T Consensus       161 ~~~~y~~pe~~~~-~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~  203 (254)
T cd06627         161 GTPYWMAPEVIEM-SGASTASDIWSLGCTVIELLTGNPPYYDLN  203 (254)
T ss_pred             cchhhcCHhhhcC-CCCCcchhHHHHHHHHHHHHhCCCCCCCcc
Confidence             123899996544 448899999999999999999999997653

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.87  E-value=4.8e-21  Score=156.36  Aligned_cols=138  Identities=36%  Similarity=0.710  Sum_probs=105.4

Q ss_pred             EEEeeecCceEEEEEEEcc--CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCCEEEEEEec
Q 041487           46 VEKIGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGRYVYLVFEY  121 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~lv~E~  121 (218)
                      ...||+|+||.||+|..+.  ++..+|+|.+...    .....+.+|+.+++.++||||+++++++.  .+..++++|||
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGT----GISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDY   81 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCC----CCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEee
Confidence            3689999999999999654  5678999987632    22345788999999999999999999985  45689999999


Q ss_pred             CCCChHHHhhhcccC------------------------------------Ccccc---------------ccccC----
Q 041487          122 LDLDLGSFIRKHTIT------------------------------------SIRPH---------------IKEVG----  146 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~------------------------------------~~~~~---------------~~~~g----  146 (218)
                      +.++|.+++......                                    +++|.               +.++|    
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07867          82 AEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             eCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceec
Confidence            998887776422100                                    12221               12222    


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                       ..|+|||.+.....++.++|||||||++|+|+||++||...
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         162 FNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             cCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence                             12899997666566899999999999999999999999764

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.87  E-value=1.4e-20  Score=151.16  Aligned_cols=140  Identities=25%  Similarity=0.458  Sum_probs=104.0

Q ss_pred             EeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCc-hHHHHHHH---HHHhhCCCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           48 KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV-PSYLIAGV---SLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~-~~~~~~e~---~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      .||+|+||.||+|.+..+++.||+|.+.+....... ...+..|.   ..++...||+++++++.+...+..++||||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            479999999999999889999999998765432211 22233333   33445689999999999999999999999998


Q ss_pred             C-ChHHHhhhcccC---------------------------Cccc-----------cccccC----------------Cc
Q 041487          124 L-DLGSFIRKHTIT---------------------------SIRP-----------HIKEVG----------------SP  148 (218)
Q Consensus       124 ~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~g----------------~~  148 (218)
                      + +|.+++......                           ++++           .+.++|                ..
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  160 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG  160 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCCcC
Confidence            7 787777543221                           1222           112222                23


Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      |+|||.+..+..++.++||||+||++|+|++|+.||...
T Consensus       161 y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         161 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             CcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence            899997665556889999999999999999999999866

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.87  E-value=4.5e-21  Score=152.42  Aligned_cols=145  Identities=24%  Similarity=0.464  Sum_probs=116.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||.|++|.||++.++.+++.+++|.+..... ....+.+.+|+.++++++||||+++++.+......++++|
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN-EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICME   79 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC-hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEE
Confidence            367888999999999999999998999999999875432 2445678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcc-cC----------------------------Ccccc-----------ccccC-------------
Q 041487          121 YLDL-DLGSFIRKHT-IT----------------------------SIRPH-----------IKEVG-------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~-~~----------------------------~~~~~-----------~~~~g-------------  146 (218)
                      |+++ +|.+++.... ..                            ++++.           ..++|             
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~  159 (265)
T cd06605          80 YMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTF  159 (265)
T ss_pred             ecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcc
Confidence            9995 9988886531 10                            11111           11221             


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                         ..|+|||.+ .+..++.++||||||+++|++++|+.||...
T Consensus       160 ~~~~~y~~PE~~-~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  202 (265)
T cd06605         160 VGTSSYMAPERI-QGNDYSVKSDIWSLGLSLIELATGRFPYPPE  202 (265)
T ss_pred             cCChhccCHHHH-cCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence               239999954 4556899999999999999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.86  E-value=1.3e-20  Score=151.96  Aligned_cols=153  Identities=25%  Similarity=0.458  Sum_probs=116.9

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      .|.-.+.||+|++|.||++.+..++..+++|.+...  .....+.+.+|+.+++.++|+|++++++.+...+..++++||
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~--~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~   97 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLR--KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEF   97 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEecc--chhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEec
Confidence            355568999999999999999889999999987532  233356688999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC--------------------------Ccccc-----------cccc-----------------C
Q 041487          122 LDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEV-----------------G  146 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~-----------------g  146 (218)
                      +.+ +|.+++......                          ++.|.           ..++                 |
T Consensus        98 ~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  177 (285)
T cd06648          98 LEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVG  177 (285)
T ss_pred             cCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccC
Confidence            976 888887553211                          11111           1111                 1


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                       ..|+|||.+ .+..++.++||||||+++|+|++|+.||...+.......+.
T Consensus       178 ~~~y~aPE~~-~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~  228 (285)
T cd06648         178 TPYWMAPEVI-SRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIR  228 (285)
T ss_pred             CccccCHHHh-cCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHH
Confidence             138999954 45558899999999999999999999998765444443333

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.86  E-value=1.2e-20  Score=148.76  Aligned_cols=152  Identities=30%  Similarity=0.544  Sum_probs=120.8

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|++.+.||+|++|.||++.+..++..+++|.+..........+.+.+|+++++.++|+|++++.+.+......++++|+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            58899999999999999999988899999999976555555667889999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcc----cC---------------------------Ccccc-----------cccc-------------
Q 041487          122 LDL-DLGSFIRKHT----IT---------------------------SIRPH-----------IKEV-------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~----~~---------------------------~~~~~-----------~~~~-------------  145 (218)
                      +++ +|.+++....    ..                           ++.+.           +.++             
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~  160 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLA  160 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCccee
Confidence            987 8988886642    10                           11111           1111             


Q ss_pred             ----C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          146 ----G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       146 ----g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                          | ..|+|||.+ ....++.++|+||+|++++++++|+.||...+...+..
T Consensus       161 ~~~~~~~~y~~pe~~-~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~  213 (258)
T cd08215         161 KTVVGTPYYLSPELC-QNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELAL  213 (258)
T ss_pred             cceeeeecccChhHh-ccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHH
Confidence                1 238899954 44558899999999999999999999998765444333

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.86  E-value=4.1e-21  Score=154.35  Aligned_cols=158  Identities=27%  Similarity=0.387  Sum_probs=115.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCc----EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +..++|++.+.||+|+||.||+|....++.    .+++|.+... ........+..|+.++++++||||+++++++. ..
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~   81 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR-SGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GA   81 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc-cchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CC
Confidence            445789999999999999999999876666    4677776421 12233456777888889999999999999875 45


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------  146 (218)
                      ..++++||+++ +|.+++......                            ++++.           ..++|       
T Consensus        82 ~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~  161 (279)
T cd05111          82 SLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYP  161 (279)
T ss_pred             ccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccC
Confidence            57889999875 999988653221                            22221           12221       


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                   ..|+|||.+ .++.++.++|||||||++||+++ |+.||.+.....+..++..
T Consensus       162 ~~~~~~~~~~~~~~~y~~pE~~-~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~  226 (279)
T cd05111         162 DDKKYFYSEHKTPIKWMALESI-LFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEK  226 (279)
T ss_pred             CCcccccCCCCCcccccCHHHh-ccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHC
Confidence                         148999955 44558999999999999999998 9999988766665555543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.86  E-value=2.3e-22  Score=171.94  Aligned_cols=169  Identities=23%  Similarity=0.299  Sum_probs=125.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccC-C--cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLET-G--KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~-~--~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      |-.+..++.++||+|+||.|++|..... |  ..||||+++...... ....|.+|+.+|.+++|+|++++|++-.+ ..
T Consensus       107 Ipee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~-~mddflrEas~M~~L~H~hliRLyGvVl~-qp  184 (1039)
T KOG0199|consen  107 IPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA-IMDDFLREASHMLKLQHPHLIRLYGVVLD-QP  184 (1039)
T ss_pred             ccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch-hHHHHHHHHHHHHhccCcceeEEeeeecc-ch
Confidence            3344567788999999999999987643 2  468999997543332 56789999999999999999999999877 66


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------------------CccccccccCC------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------------------SIRPHIKEVGS------  147 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------------------~~~~~~~~~g~------  147 (218)
                      +-+|+|.+++ +|.+.+.+-...                                        .-..++.+||.      
T Consensus       185 ~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~  264 (1039)
T KOG0199|consen  185 AMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGE  264 (1039)
T ss_pred             hhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCC
Confidence            7899999987 888888772111                                        11123344443      


Q ss_pred             ---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchh
Q 041487          148 ---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       148 ---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                     +|.|||.+... .++.++|||+|||++|||+| |+.||.+.....+.+.+......+.+...|
T Consensus       265 ned~Yvm~p~rkvPfAWCaPEsLrh~-kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~cs  341 (1039)
T KOG0199|consen  265 NEDMYVMAPQRKVPFAWCAPESLRHR-KFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCS  341 (1039)
T ss_pred             CCcceEecCCCcCcccccCHhHhccc-cccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCCh
Confidence                           39999965544 49999999999999999999 899999986666655555444444443333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=3.1e-23  Score=184.57  Aligned_cols=152  Identities=27%  Similarity=0.452  Sum_probs=128.4

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      -.+..++|.++++||+|+||.|.+++++.+++.||+|++.+.. ..+.....|..|-.+|...+.+.|+.++..|++..+
T Consensus        70 lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~  149 (1317)
T KOG0612|consen   70 LRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERY  149 (1317)
T ss_pred             HhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccc
Confidence            3457889999999999999999999999999999999998754 456677899999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhccc-C--------------------------Cccccc-----------cc-----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTI-T--------------------------SIRPHI-----------KE-----------  144 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~-~--------------------------~~~~~~-----------~~-----------  144 (218)
                      +|+||||++| +|...+.+... .                          +++|.+           ++           
T Consensus       150 LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG  229 (1317)
T KOG0612|consen  150 LYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADG  229 (1317)
T ss_pred             eEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCCC
Confidence            9999999987 88877776651 1                          555543           22           


Q ss_pred             -------cCCc-ccCcccccC---C-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 -------VGSP-YKAPESRIR---S-SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 -------~g~~-y~aPE~~~~---~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                             .|+| |.+||++..   + +.|+..+|.||+||.+|||+.|..||+..
T Consensus       230 ~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad  284 (1317)
T KOG0612|consen  230 TVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD  284 (1317)
T ss_pred             cEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH
Confidence                   2333 999997533   3 66999999999999999999999999865

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.86  E-value=1.8e-20  Score=151.31  Aligned_cols=146  Identities=23%  Similarity=0.437  Sum_probs=111.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC-----C
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG-----R  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~-----~  113 (218)
                      .++|++.+.||+|+||.||++....+++.+|+|.+...   ......+.+|+.+++++ +|||++++++++...     .
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~---~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   97 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPI---SDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGG   97 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccc---ccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCC
Confidence            57899999999999999999999899999999998642   22345677899999998 899999999998643     4


Q ss_pred             EEEEEEecCCC-ChHHHhhhcc----c-C--------------------------Cccc-----------cccccC----
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHT----I-T--------------------------SIRP-----------HIKEVG----  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~----~-~--------------------------~~~~-----------~~~~~g----  146 (218)
                      ..+++|||+++ +|.+++....    . .                          ++++           ...++|    
T Consensus        98 ~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~  177 (291)
T cd06639          98 QLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQ  177 (291)
T ss_pred             eeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchh
Confidence            68999999987 8888765311    0 0                          1111           112221    


Q ss_pred             --------------CcccCcccccCCC----CCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 --------------SPYKAPESRIRSS----VYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~----~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                    ..|+|||.+....    .++.++|||||||++|+|++|+.||...+
T Consensus       178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~  237 (291)
T cd06639         178 LTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMH  237 (291)
T ss_pred             cccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCc
Confidence                          2399999654332    26789999999999999999999998764

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.86  E-value=3.6e-21  Score=156.12  Aligned_cols=145  Identities=24%  Similarity=0.499  Sum_probs=112.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ..|.....||+|+||.||++.+..++..+|+|.+....  ....+.+.+|+.+++.++|||++++++.+..++..++++|
T Consensus        21 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e   98 (297)
T cd06659          21 SLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRK--QQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLME   98 (297)
T ss_pred             hhHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecc--cchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEe
Confidence            44555668999999999999998899999999986432  2335678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Cccc-----------cccccC----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRP-----------HIKEVG----------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~-----------~~~~~g----------------  146 (218)
                      |+++ +|.+++......                          ++++           .+.++|                
T Consensus        99 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~  178 (297)
T cd06659          99 FLQGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLV  178 (297)
T ss_pred             cCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccccccccccee
Confidence            9987 777766443211                          1111           112221                


Q ss_pred             --CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 --SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 --~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                        ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+
T Consensus       179 ~~~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  221 (297)
T cd06659         179 GTPYWMAPEVI-SRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS  221 (297)
T ss_pred             cCccccCHHHH-ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence              238999955 44558999999999999999999999997654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.86  E-value=5.7e-21  Score=151.03  Aligned_cols=149  Identities=30%  Similarity=0.518  Sum_probs=116.1

Q ss_pred             EEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           47 EKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      +.||+|+||.||+|.....   +..+++|.+....... ..+.+.+|+.+++.++|+|++++++++......+++|||++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh-HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEecc
Confidence            4689999999999998765   8899999987543333 46788999999999999999999999999999999999996


Q ss_pred             C-ChHHHhhhc---------ccC---------------------------Cccccc-----------ccc----------
Q 041487          124 L-DLGSFIRKH---------TIT---------------------------SIRPHI-----------KEV----------  145 (218)
Q Consensus       124 ~-~L~~~~~~~---------~~~---------------------------~~~~~~-----------~~~----------  145 (218)
                      + +|.+++...         ...                           +++|.+           .++          
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~  159 (262)
T cd00192          80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDD  159 (262)
T ss_pred             CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEccccccccccccc
Confidence            5 999998764         111                           222221           111          


Q ss_pred             ----------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          146 ----------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 ----------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                ...|+|||.+.. ..++.++||||||+++|+|++ |..||.......+...+.
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~  221 (262)
T cd00192         160 YYRKKTGGKLPIRWMAPESLKD-GIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLR  221 (262)
T ss_pred             ccccccCCCcCccccCHHHhcc-CCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence                      123899995544 468999999999999999999 699998875555555444

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.86  E-value=6.6e-21  Score=152.45  Aligned_cols=155  Identities=25%  Similarity=0.419  Sum_probs=117.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      .++|++++.||+|+||.||+|+.+.     ....+++|.+... ......+.+.+|+.++++++|+|++++++++.....
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   82 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKT-KDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEP   82 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCc-cchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCc
Confidence            4789999999999999999999653     3467999987532 122345779999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcc---------cC---------------------------Cccccc-----------cccC
Q 041487          115 VYLVFEYLDL-DLGSFIRKHT---------IT---------------------------SIRPHI-----------KEVG  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~---------~~---------------------------~~~~~~-----------~~~g  146 (218)
                      .+++|||+++ +|.+++....         ..                           +++|.+           ..+|
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~  162 (275)
T cd05046          83 HYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLS  162 (275)
T ss_pred             ceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccc
Confidence            9999999986 9999886544         11                           222221           1111


Q ss_pred             -------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 -------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 -------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                                         ..|+|||.+. +..++.++||||||+++|++++ |..||............
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~-~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~  231 (275)
T cd05046         163 LSKDVYNSEYYKLRNALIPLRWLAPEAVQ-EDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRL  231 (275)
T ss_pred             cccccCcccccccCCceeEEeecChhhhc-cCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHH
Confidence                               1299999544 4457889999999999999999 88999766444433333

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.86  E-value=4.5e-21  Score=153.75  Aligned_cols=146  Identities=44%  Similarity=0.788  Sum_probs=117.4

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      |++.+.||.|++|.||+|.+..+++.+++|.++...........+.+|+.++++++|++++++++.+..+...++++||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            67789999999999999999889999999998765444445678889999999999999999999999999999999999


Q ss_pred             CCChHHHhhhcccC----------------------------Cccc-----------ccccc-----------------C
Q 041487          123 DLDLGSFIRKHTIT----------------------------SIRP-----------HIKEV-----------------G  146 (218)
Q Consensus       123 ~~~L~~~~~~~~~~----------------------------~~~~-----------~~~~~-----------------g  146 (218)
                      ++++.+++......                            ++.+           .+.++                 +
T Consensus        81 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~  160 (283)
T cd05118          81 DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVV  160 (283)
T ss_pred             CCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccC
Confidence            98888887664211                            1111           11111                 1


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                       ..|.|||.+.....++.++|+||||+++|+++||+.||+..+
T Consensus       161 ~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~  203 (283)
T cd05118         161 TRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKS  203 (283)
T ss_pred             cccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence             238899966555468999999999999999999999998764

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.86  E-value=3.6e-21  Score=154.24  Aligned_cols=146  Identities=49%  Similarity=0.881  Sum_probs=119.4

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      |+..+.||+|.+|.||+|+...+++.+++|.+..........+.+..|+.+++.++|++++++++++......++++||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            56788999999999999999989999999999866544555677889999999999999999999999999999999999


Q ss_pred             CCChHHHhhhcc-cC---------------------------Ccccc-----------cccc------------------
Q 041487          123 DLDLGSFIRKHT-IT---------------------------SIRPH-----------IKEV------------------  145 (218)
Q Consensus       123 ~~~L~~~~~~~~-~~---------------------------~~~~~-----------~~~~------------------  145 (218)
                      +++|.+++.... ..                           ++++.           +.++                  
T Consensus        81 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  160 (282)
T cd07829          81 DMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVV  160 (282)
T ss_pred             CcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCcccc
Confidence            999999887652 11                           11211           1111                  


Q ss_pred             CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                      ...|+|||.+.....++.++|+|||||++|++++|+.||...+
T Consensus       161 ~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  203 (282)
T cd07829         161 TLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS  203 (282)
T ss_pred             CcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence            1238999976666578999999999999999999999998763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.86  E-value=5.7e-21  Score=157.36  Aligned_cols=162  Identities=23%  Similarity=0.421  Sum_probs=121.7

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccC-------CcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLET-------GKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRL  105 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~-------~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~  105 (218)
                      ....+...+|++.+.||+|+||.||+|.+...       +..+|+|.++.. ......+.+.+|+.+++++ +||||+++
T Consensus         5 ~~~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~iv~~   83 (334)
T cd05100           5 PKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDD-ATDKDLSDLVSEMEMMKMIGKHKNIINL   83 (334)
T ss_pred             cccccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccc-cCHHHHHHHHHHHHHHHhhcCCCCeeee
Confidence            34456667899999999999999999986432       236899987643 2333456788999999999 89999999


Q ss_pred             eeeEEeCCEEEEEEecCCC-ChHHHhhhccc-------------------------------------------CCcccc
Q 041487          106 LDVLTTGRYVYLVFEYLDL-DLGSFIRKHTI-------------------------------------------TSIRPH  141 (218)
Q Consensus       106 ~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~-------------------------------------------~~~~~~  141 (218)
                      ++.+...+.+++++||+++ +|.+++.....                                           .+++|.
T Consensus        84 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~  163 (334)
T cd05100          84 LGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAAR  163 (334)
T ss_pred             eEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccc
Confidence            9999999999999999987 99988764311                                           011221


Q ss_pred             c-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCc
Q 041487          142 I-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKK  189 (218)
Q Consensus       142 ~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~  189 (218)
                      +           .++|                    ..|+|||.+ .+..++.++||||||+++|+|++ |..||...+.
T Consensus       164 Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  242 (334)
T cd05100         164 NVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL-FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV  242 (334)
T ss_pred             eEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHh-ccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCH
Confidence            1           1111                    239999955 44558899999999999999999 8999988766


Q ss_pred             chHHHHHH
Q 041487          190 DHLSLIVR  197 (218)
Q Consensus       190 ~~~~~~~~  197 (218)
                      +.....+.
T Consensus       243 ~~~~~~~~  250 (334)
T cd05100         243 EELFKLLK  250 (334)
T ss_pred             HHHHHHHH
Confidence            66555544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.86  E-value=5.9e-22  Score=166.44  Aligned_cols=160  Identities=26%  Similarity=0.429  Sum_probs=127.8

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .+.+++-.+...+.+.||+|.||.|.+|.- ..+..||+|+++... .......|.+|+.+|.+++||||+++.++|..+
T Consensus       530 ~al~EfPRs~L~~~ekiGeGqFGEVhLCev-eg~lkVAVK~Lr~~a-~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~D  607 (807)
T KOG1094|consen  530 PALVEFPRSRLRFKEKIGEGQFGEVHLCEV-EGPLKVAVKILRPDA-TKNARNDFLKEIKILSRLKHPNIVELLGVCVQD  607 (807)
T ss_pred             cchhhcchhheehhhhhcCcccceeEEEEe-cCceEEEEeecCccc-chhHHHHHHHHHHHHhccCCCCeeEEEeeeecC
Confidence            455666677788999999999999999986 336899999998543 333467899999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccCC----------------------------------------ccccccccCC----
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTITS----------------------------------------IRPHIKEVGS----  147 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~~----------------------------------------~~~~~~~~g~----  147 (218)
                      +.+++++||++. +|.+|+.++....                                        ...++.++|.    
T Consensus       608 ePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~l  687 (807)
T KOG1094|consen  608 DPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNL  687 (807)
T ss_pred             CchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCccccccc
Confidence            999999999986 9999999884321                                        1112233332    


Q ss_pred             ----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh--CCCCCCCCCcchHHHH
Q 041487          148 ----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS--GKPLFPCGKKDHLSLI  195 (218)
Q Consensus       148 ----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t--g~~Pf~~~~~~~~~~~  195 (218)
                                      .|||||.+..++ ++.++|+|+||+++||+++  .+.||+....+.....
T Consensus       688 ysg~yy~vqgr~vlpiRwmawEsillgk-FttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven  752 (807)
T KOG1094|consen  688 YSGDYYRVQGRAVLPIRWMAWESILLGK-FTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVEN  752 (807)
T ss_pred             ccCCceeeecceeeeeeehhHHHHHhcc-ccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHh
Confidence                            299999777666 8999999999999999877  6799988755554443

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.86  E-value=6.1e-21  Score=155.08  Aligned_cols=160  Identities=24%  Similarity=0.440  Sum_probs=121.8

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEc-------cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeee
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNL-------ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLD  107 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~-------~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~  107 (218)
                      ..+..++|++.+.||+|+||.||+|+..       ..+..+|+|.+... ......+.+.+|+.+++.+ +||||+++++
T Consensus        10 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~   88 (304)
T cd05101          10 WEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLG   88 (304)
T ss_pred             ccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccc-cchHHHHHHHHHHHHHHhhccCCCchheeE
Confidence            3467888999999999999999999753       23457999988643 2233456788999999999 8999999999


Q ss_pred             eEEeCCEEEEEEecCCC-ChHHHhhhcccC-------------------------------------------Cccccc-
Q 041487          108 VLTTGRYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRPHI-  142 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~~~-  142 (218)
                      .+......+++|||+.+ +|.+++......                                           ++++.+ 
T Consensus        89 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Ni  168 (304)
T cd05101          89 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNV  168 (304)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceE
Confidence            99999999999999987 998887653110                                           222211 


Q ss_pred             ----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcch
Q 041487          143 ----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDH  191 (218)
Q Consensus       143 ----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~  191 (218)
                                .++|                    ..|+|||.+ .+..++.++||||||+++|++++ |..||.......
T Consensus       169 li~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~  247 (304)
T cd05101         169 LVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEAL-FDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE  247 (304)
T ss_pred             EEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhh-ccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH
Confidence                      1111                    239999955 44558999999999999999999 889998776555


Q ss_pred             HHHHHH
Q 041487          192 LSLIVR  197 (218)
Q Consensus       192 ~~~~~~  197 (218)
                      +...+.
T Consensus       248 ~~~~~~  253 (304)
T cd05101         248 LFKLLK  253 (304)
T ss_pred             HHHHHH
Confidence            555444

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.86  E-value=6.8e-21  Score=151.32  Aligned_cols=148  Identities=23%  Similarity=0.361  Sum_probs=109.3

Q ss_pred             EeeecCceEEEEEEEc--cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           48 KIGQGVFGEVYKCLNL--ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      .||+|+||.||+|..+  ..+..||+|.+... ......+.+.+|+.++++++|+||+++++++. ....++||||+++ 
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~-~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~   79 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNE-NEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGG   79 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccc-cChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCC
Confidence            4899999999999765  34567999998643 23344567899999999999999999999875 4578999999987 


Q ss_pred             ChHHHhhhcccC----------------------------Cccccc-----------cccC-------------------
Q 041487          125 DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-------------------  146 (218)
Q Consensus       125 ~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-------------------  146 (218)
                      +|.+++......                            +++|.+           .++|                   
T Consensus        80 ~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  159 (257)
T cd05115          80 PLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGK  159 (257)
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCC
Confidence            898887542211                            222211           1221                   


Q ss_pred             --CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 --SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 --~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                        ..|+|||.+ ....++.++|||||||++|++++ |+.||...........+..
T Consensus       160 ~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~  213 (257)
T cd05115         160 WPLKWYAPECI-NFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQ  213 (257)
T ss_pred             CCcccCCHHHH-ccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHC
Confidence              249999954 45558899999999999999997 9999987755554444443

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.86  E-value=8e-21  Score=151.73  Aligned_cols=146  Identities=29%  Similarity=0.506  Sum_probs=113.2

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC--------CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP--------EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +|.+.+.||.|++|.||+|....+++.+|+|.++.....        ....+.+.+|+.+++.++|+|++++++++....
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            478889999999999999999889999999988643211        112456788999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc---------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV---------  145 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~---------  145 (218)
                      ..++||||+++ +|.+++......                           ++.+.+           .++         
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  161 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDI  161 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccccccc
Confidence            99999999977 888877654221                           111111           111         


Q ss_pred             -----------CCcccCcccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -----------GSPYKAPESRIRSS-VYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -----------g~~y~aPE~~~~~~-~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                 ...|+|||.+.... .++.++|+||||+++|++++|..||...
T Consensus       162 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  215 (272)
T cd06629         162 YDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDE  215 (272)
T ss_pred             ccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCc
Confidence                       12389999655443 4788999999999999999999999754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.86  E-value=5.9e-22  Score=167.68  Aligned_cols=178  Identities=22%  Similarity=0.375  Sum_probs=133.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccC----CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLET----GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~----~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      ...+..+..+....||+|-||.||+|.....    ..-||||+++... ..+..+.|.+|+.+++.++||||++++++|.
T Consensus       383 nyel~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~-t~d~tekflqEa~iMrnfdHphIikLIGv~~  461 (974)
T KOG4257|consen  383 NYELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC-TPDDTEKFLQEASIMRNFDHPHIIKLIGVCV  461 (974)
T ss_pred             cceeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCC-ChhhHHHHHHHHHHHHhCCCcchhheeeeee
Confidence            3445555566678899999999999987533    3458999998543 3344899999999999999999999999996


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccc-----------cccccCCc--
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRP-----------HIKEVGSP--  148 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~-----------~~~~~g~~--  148 (218)
                      +. ..|||||.++. -|..|+......                            ++..           +..+||..  
T Consensus       462 e~-P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~  540 (974)
T KOG4257|consen  462 EQ-PMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRY  540 (974)
T ss_pred             cc-ceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhh
Confidence            54 58999999986 777777665443                            1111           12334432  


Q ss_pred             -----------------ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCC-CcchHHHHHHHhcccCcccchh
Q 041487          149 -----------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCG-KKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       149 -----------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~-~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                       ||||| -++...++.++|||=|||.+||+++ |..||.+- +.+.+-.+.+.-..|-++.=+|
T Consensus       541 ~ed~~yYkaS~~kLPIKWmaPE-SINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp  619 (974)
T KOG4257|consen  541 LEDDAYYKASRGKLPIKWMAPE-SINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPP  619 (974)
T ss_pred             ccccchhhccccccceeecCcc-ccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCCh
Confidence                             99999 5677789999999999999999999 99999988 7777777666555555555555


Q ss_pred             hhhhhc
Q 041487          210 CFLSIM  215 (218)
Q Consensus       210 ~~~~~~  215 (218)
                      ...+.|
T Consensus       620 ~LYslm  625 (974)
T KOG4257|consen  620 ALYSLM  625 (974)
T ss_pred             HHHHHH
Confidence            555544

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.86  E-value=5.2e-21  Score=161.34  Aligned_cols=97  Identities=27%  Similarity=0.431  Sum_probs=80.7

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeee
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDV  108 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~  108 (218)
                      ...+..++|.+.+.||+|+||.||+|.++     ..+..||+|.++... .....+.+.+|+.++.++. ||||+++++.
T Consensus        31 ~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~-~~~~~~~~~~E~~~l~~l~~H~niv~~~~~  109 (401)
T cd05107          31 AWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTA-RSSEKQALMSELKIMSHLGPHLNIVNLLGA  109 (401)
T ss_pred             cceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCC-ChhHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            35566778999999999999999999864     345689999997532 2233457889999999997 9999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhh
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                      +...+..++||||+.+ +|.+++..
T Consensus       110 ~~~~~~~~iv~E~~~~g~L~~~l~~  134 (401)
T cd05107         110 CTKGGPIYIITEYCRYGDLVDYLHR  134 (401)
T ss_pred             EccCCCcEEEEeccCCCcHHHHHHh
Confidence            9999999999999987 99888754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.86  E-value=5.2e-21  Score=153.59  Aligned_cols=144  Identities=38%  Similarity=0.681  Sum_probs=114.5

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEEEec
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      |++.+.||+|++|.||+|+...+++.+++|.+...... .......+|+..++++. |+|++++++.+..++..++||||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~   79 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEY   79 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc-hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEec
Confidence            67889999999999999999888999999998754332 22334567889999998 99999999999999999999999


Q ss_pred             CCCChHHHhhhcc--c-C--------------------------Cccccc-----------ccc----------------
Q 041487          122 LDLDLGSFIRKHT--I-T--------------------------SIRPHI-----------KEV----------------  145 (218)
Q Consensus       122 ~~~~L~~~~~~~~--~-~--------------------------~~~~~~-----------~~~----------------  145 (218)
                      +.++|.+++....  . .                          ++.+.+           .++                
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~  159 (283)
T cd07830          80 MEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYV  159 (283)
T ss_pred             CCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCC
Confidence            9889988876643  1 1                          111111           111                


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                       ...|+|||.+.....++.++|+||||+++|++++|++||+..
T Consensus       160 ~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~  202 (283)
T cd07830         160 STRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGS  202 (283)
T ss_pred             CcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCC
Confidence             123899997766666889999999999999999999999876

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=1.2e-20  Score=149.68  Aligned_cols=149  Identities=27%  Similarity=0.455  Sum_probs=109.2

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHH-HhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSL-LKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~-l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||.|++|.||+|.+..+++.+|+|.+++.... ......+..|..+ ....+|+|++++++.+...+.+++++||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            5789999999999999889999999998754321 2222334444444 4445899999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Ccccc-----------ccccC--------------CcccC
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPH-----------IKEVG--------------SPYKA  151 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g--------------~~y~a  151 (218)
                       +|.+++......                           ++++.           ..++|              ..|+|
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~~  161 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLA  161 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccccccCCCCcCccC
Confidence             888887653321                           11111           12222              23899


Q ss_pred             cccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          152 PESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       152 PE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      ||.+. +..++.++||||||+++|++++|..||...+...+...+
T Consensus       162 pe~~~-~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~  205 (260)
T cd05611         162 PETIL-GVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNI  205 (260)
T ss_pred             hhhhc-CCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence            99654 444889999999999999999999999877555544433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.86  E-value=7.1e-21  Score=150.65  Aligned_cols=151  Identities=28%  Similarity=0.495  Sum_probs=115.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ...+|++.+.||+|+||.||++..  ++..+|+|.++..    ...+.+.+|+.++++++|||++++++.+... ..+++
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~--~~~~~~iK~~~~~----~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v   76 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEY--TGQKVAVKNIKCD----VTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIV   76 (254)
T ss_pred             cHHHceeeeeeccCCCCceEeccc--CCCceEEEeecCc----chHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEE
Confidence            346799999999999999999864  7889999988632    2346788999999999999999999998654 47999


Q ss_pred             EecCCC-ChHHHhhhcccC-----------------------------Ccccc-----------ccccC-----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEVG-----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~g-----------  146 (218)
                      |||+.+ +|.+++......                             +++|.           ..++|           
T Consensus        77 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~  156 (254)
T cd05083          77 MELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDN  156 (254)
T ss_pred             EECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceeccccCCC
Confidence            999986 999888654321                             22221           12222           


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                          ..|+|||.+ .+..++.++|+|||||++|+|++ |+.||...+.......+.
T Consensus       157 ~~~~~~y~~pe~~-~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~  211 (254)
T cd05083         157 SKLPVKWTAPEAL-KHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVE  211 (254)
T ss_pred             CCCCceecCHHHh-ccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHh
Confidence                238999954 45568899999999999999998 999998775554444443

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.86  E-value=9.2e-21  Score=154.81  Aligned_cols=159  Identities=26%  Similarity=0.448  Sum_probs=119.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc-------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE-------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVL  109 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~  109 (218)
                      +..++|.+.+.||+|+||.||+|++..       ....+|+|.++... .......+.+|+.+++.+ +||||+++++++
T Consensus         9 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~   87 (314)
T cd05099           9 FPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA-TDKDLADLISEMELMKLIGKHKNIINLLGVC   87 (314)
T ss_pred             ccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC-ChHHHHHHHHHHHHHHhccCCCCeeeEEEEE
Confidence            445789999999999999999997632       34579999876432 233456788999999999 699999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhccc-----------------C--------------------------Cccccc---
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTI-----------------T--------------------------SIRPHI---  142 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~-----------------~--------------------------~~~~~~---  142 (218)
                      ......+++|||+++ +|.+++.....                 .                          ++++.+   
T Consensus        88 ~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill  167 (314)
T cd05099          88 TQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLV  167 (314)
T ss_pred             ccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEE
Confidence            999999999999987 99988865321                 0                          111111   


Q ss_pred             --------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHH
Q 041487          143 --------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLS  193 (218)
Q Consensus       143 --------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~  193 (218)
                              .++|                    ..|+|||.+. +..++.++|||||||++|++++ |..||.......+.
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~  246 (314)
T cd05099         168 TEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALF-DRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELF  246 (314)
T ss_pred             cCCCcEEEccccccccccccccccccccCCCCccccCHHHHc-cCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence                    1111                    2499999554 4568999999999999999999 89999877655555


Q ss_pred             HHHHH
Q 041487          194 LIVRY  198 (218)
Q Consensus       194 ~~~~~  198 (218)
                      ..+..
T Consensus       247 ~~~~~  251 (314)
T cd05099         247 KLLRE  251 (314)
T ss_pred             HHHHc
Confidence            54443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.86  E-value=4.5e-21  Score=154.51  Aligned_cols=148  Identities=26%  Similarity=0.428  Sum_probs=112.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .++|+..+.||+|+||.||++.+..+++.+|+|.+...... .....+.+|+.++.++. |+||+++++++......+++
T Consensus         3 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~   81 (288)
T cd06616           3 AEDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWIC   81 (288)
T ss_pred             HHHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh-HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEE
Confidence            35677788999999999999999999999999998754322 34567888999999995 99999999999988999999


Q ss_pred             EecCCCChHHHhhh---cc---c---------------------------CCcccc-----------cccc---------
Q 041487          119 FEYLDLDLGSFIRK---HT---I---------------------------TSIRPH-----------IKEV---------  145 (218)
Q Consensus       119 ~E~~~~~L~~~~~~---~~---~---------------------------~~~~~~-----------~~~~---------  145 (218)
                      |||+..++.++...   ..   .                           .++++.           +.++         
T Consensus        82 ~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  161 (288)
T cd06616          82 MELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS  161 (288)
T ss_pred             EecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccC
Confidence            99998766543211   00   0                           011111           1122         


Q ss_pred             --------CCcccCcccccCC--CCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 --------GSPYKAPESRIRS--SVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 --------g~~y~aPE~~~~~--~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                              ...|+|||.+...  ..++.++|||||||++|+|++|+.||....
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  214 (288)
T cd06616         162 IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN  214 (288)
T ss_pred             CccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc
Confidence                    1249999976554  368899999999999999999999997653

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.86  E-value=7e-21  Score=152.17  Aligned_cols=147  Identities=31%  Similarity=0.444  Sum_probs=110.9

Q ss_pred             EEeeecCceEEEEEEEccCCc--EEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGK--KVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      +.||+|+||.||+|+...++.  .+++|.++.. ......+.+.+|+.++.++ +||||+++++++...+.++++|||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   79 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEcccc-CCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCC
Confidence            368999999999999877765  4688877632 2334456788999999999 89999999999999999999999998


Q ss_pred             C-ChHHHhhhcccC-------------------------------------------Ccccc-----------ccccCC-
Q 041487          124 L-DLGSFIRKHTIT-------------------------------------------SIRPH-----------IKEVGS-  147 (218)
Q Consensus       124 ~-~L~~~~~~~~~~-------------------------------------------~~~~~-----------~~~~g~-  147 (218)
                      + +|.+++......                                           +++|.           ..++|. 
T Consensus        80 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~  159 (270)
T cd05047          80 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS  159 (270)
T ss_pred             CCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCc
Confidence            6 998888643210                                           22221           122332 


Q ss_pred             ----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHH
Q 041487          148 ----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLI  195 (218)
Q Consensus       148 ----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~  195 (218)
                                      .|+|||.+ ....++.++|||||||++|+|++ |..||...+.......
T Consensus       160 ~~~~~~~~~~~~~~~~~y~apE~~-~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~  223 (270)
T cd05047         160 RGQEVYVKKTMGRLPVRWMAIESL-NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEK  223 (270)
T ss_pred             cccchhhhccCCCCccccCChHHH-ccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHH
Confidence                            29999954 55568999999999999999997 9999987654444433

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.86  E-value=7.5e-21  Score=153.49  Aligned_cols=154  Identities=26%  Similarity=0.468  Sum_probs=116.5

Q ss_pred             ceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +|++.+.||+|+||.||+|+...     ....+++|.+.... .....+.+.+|+.+++.++||||+++++.+..++..+
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   79 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENA-SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLL   79 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCC-CHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcE
Confidence            47889999999999999998643     23568888876432 2233467889999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------------------------------Ccccc---
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------------------------------SIRPH---  141 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------------------------------~~~~~---  141 (218)
                      +++||+.+ +|.+++......                                                   +++|.   
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nil  159 (290)
T cd05045          80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVL  159 (290)
T ss_pred             EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEE
Confidence            99999986 898887542100                                                   11111   


Q ss_pred             --------ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchH
Q 041487          142 --------IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHL  192 (218)
Q Consensus       142 --------~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~  192 (218)
                              +.++|                    ..|+|||.+ .+..++.++||||||+++|+|++ |+.||++.....+
T Consensus       160 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~-~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~  238 (290)
T cd05045         160 VAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL-FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERL  238 (290)
T ss_pred             EcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHH-ccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Confidence                    11121                    248999954 45558999999999999999999 9999988766665


Q ss_pred             HHHHH
Q 041487          193 SLIVR  197 (218)
Q Consensus       193 ~~~~~  197 (218)
                      .....
T Consensus       239 ~~~~~  243 (290)
T cd05045         239 FNLLK  243 (290)
T ss_pred             HHHHh
Confidence            55544

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.86  E-value=4.6e-22  Score=156.80  Aligned_cols=140  Identities=32%  Similarity=0.535  Sum_probs=113.4

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      .+.||+|+++.|-.|....++.++|||++.+.  ......+..+|++++..+ .|+||+.++++|.++..+|+|||-+.+
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq--~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~G  160 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ--PGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRG  160 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcC--CchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccC
Confidence            46799999999999999999999999999865  455578899999999999 699999999999999999999999987


Q ss_pred             -ChHHHhhhcccC---------------------------Cccccccc--------------------------------
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPHIKE--------------------------------  144 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~~~~--------------------------------  144 (218)
                       .|...|.++..-                           +.+|.+..                                
T Consensus       161 GplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spast  240 (463)
T KOG0607|consen  161 GPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPAST  240 (463)
T ss_pred             chHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCC
Confidence             777766553221                           33332211                                


Q ss_pred             ------cCCc-ccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 ------VGSP-YKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 ------~g~~-y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                            +|++ |||||++.-    .-.|+.+.|.||||+++|-|++|.+||.+.
T Consensus       241 P~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~  294 (463)
T KOG0607|consen  241 PELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGH  294 (463)
T ss_pred             ccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCc
Confidence                  1222 999996422    244899999999999999999999999865

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.86  E-value=5.1e-21  Score=154.89  Aligned_cols=147  Identities=24%  Similarity=0.466  Sum_probs=113.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +.|.....||+|+||.||++.+..++..+|+|.+...  .....+.+.+|+.+++.++|+|++++++.+...+..+++||
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e   99 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLR--KQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVME   99 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecc--hHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEe
Confidence            3455567899999999999999889999999988642  23345678899999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Ccccc-----------ccccC----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPH-----------IKEVG----------------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~-----------~~~~g----------------  146 (218)
                      |+++ +|.+++......                          ++++.           ..++|                
T Consensus       100 ~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~  179 (292)
T cd06658         100 FLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLV  179 (292)
T ss_pred             CCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceee
Confidence            9987 787776443211                          11111           11221                


Q ss_pred             --CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          147 --SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       147 --~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                        ..|+|||.+ .+..++.++||||||+++|++++|+.||...+..
T Consensus       180 ~~~~y~aPE~~-~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~  224 (292)
T cd06658         180 GTPYWMAPEVI-SRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL  224 (292)
T ss_pred             cCccccCHHHH-ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence              239999954 4555889999999999999999999999876443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.86  E-value=2.2e-20  Score=150.08  Aligned_cols=144  Identities=43%  Similarity=0.758  Sum_probs=111.5

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC---CCCCeeeeeeeEEeCCE-----
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---EHDNIVRLLDVLTTGRY-----  114 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~~~~~-----  114 (218)
                      |++.+.||+|++|.||+|+++.++..+|+|.++...........+.+|+.+++++   +|+|++++++++.....     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            6789999999999999999988899999999975544444445666787777665   69999999999987766     


Q ss_pred             EEEEEecCCCChHHHhhhcccC-----------------------------Cccc-----------ccccc---------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRP-----------HIKEV---------  145 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~-----------~~~~~---------  145 (218)
                      .+++|||++++|.+++......                             ++++           .+.++         
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~  160 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE  160 (287)
T ss_pred             eEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccCC
Confidence            9999999998888877653221                             1111           11111         


Q ss_pred             --------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ...|+|||.+ .+..++.++|+|||||++|+|++|++||...
T Consensus       161 ~~~~~~~~~~~~~~PE~~-~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~  209 (287)
T cd07838         161 MALTSVVVTLWYRAPEVL-LQSSYATPVDMWSVGCIFAELFRRRPLFRGT  209 (287)
T ss_pred             cccccccccccccChHHh-ccCCCCCcchhhhHHHHHHHHHhCCCcccCC
Confidence                    1238999965 4455889999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.86  E-value=7.7e-21  Score=154.93  Aligned_cols=147  Identities=23%  Similarity=0.394  Sum_probs=114.2

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|+..+.||+|++|.||+|.++.++..+++|.+.... ......+.+.+|+.+++.++|+|++++++++......++|||
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            3777889999999999999998899999999986432 223345678889999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC--------------C
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG--------------S  147 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g--------------~  147 (218)
                      |+.+++.+++......                            ++++.           ..++|              .
T Consensus        96 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  175 (308)
T cd06634          96 YCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTP  175 (308)
T ss_pred             ccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCcccccCCc
Confidence            9988887776432211                            11111           12222              2


Q ss_pred             cccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          148 PYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       148 ~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                      .|+|||.+.  ....++.++|||||||++|+|++|+.||...+
T Consensus       176 ~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  218 (308)
T cd06634         176 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (308)
T ss_pred             cccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc
Confidence            389999654  23457889999999999999999999987653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=5.9e-21  Score=158.27  Aligned_cols=145  Identities=26%  Similarity=0.419  Sum_probs=114.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-EEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-YVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~l  117 (218)
                      ..++|.-...||+|+||.||+|... ++..||||.+.......  ...|.+|+.++.+++|||+|+++|+|.+.+ ..++
T Consensus        73 AT~~Fs~~~~ig~Ggfg~VYkG~l~-~~~~vAVK~~~~~~~~~--~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~L  149 (361)
T KOG1187|consen   73 ATNNFSESNLIGEGGFGTVYKGVLS-DGTVVAVKRLSSNSGQG--EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLL  149 (361)
T ss_pred             HHhCCchhcceecCCCeEEEEEEEC-CCCEEEEEEecCCCCcc--hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEE
Confidence            4578888999999999999999863 44899999776433221  455999999999999999999999999888 5999


Q ss_pred             EEecCCC-ChHHHhhhccc----C---------------------------------------Ccccccccc--------
Q 041487          118 VFEYLDL-DLGSFIRKHTI----T---------------------------------------SIRPHIKEV--------  145 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~----~---------------------------------------~~~~~~~~~--------  145 (218)
                      |.||++. +|.+++.....    +                                       +..+++.+|        
T Consensus       150 VYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~  229 (361)
T KOG1187|consen  150 VYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPE  229 (361)
T ss_pred             EEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCc
Confidence            9999985 99888766542    1                                       222222332        


Q ss_pred             ----------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ----------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ----------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                | ..|+|||.... +..+.++||||||+++.|++||+.|.+..
T Consensus       230 ~~~~~~~~~~gt~gY~~PEy~~~-g~lt~KsDVySFGVvllElitgr~~~d~~  281 (361)
T KOG1187|consen  230 GDTSVSTTVMGTFGYLAPEYAST-GKLTEKSDVYSFGVVLLELITGRKAVDQS  281 (361)
T ss_pred             cccceeeecCCCCccCChhhhcc-CCcCcccccccchHHHHHHHhCCcccCCC
Confidence                      2 24899996544 55899999999999999999999988864

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.86  E-value=7.4e-21  Score=152.16  Aligned_cols=176  Identities=24%  Similarity=0.372  Sum_probs=127.6

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ++|.+.+.||.|++|.||+|+.+.++..+++|++.+... .....+.+.+|..+++++. |+||+++++.+...+..+++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            479999999999999999999998999999999875432 2233467888999999998 99999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc---------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE---------------  144 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~---------------  144 (218)
                      ||++.+ +|.+++......                           ++++.+           .+               
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~  160 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPES  160 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCcccccc
Confidence            999955 898888665321                           111110           00               


Q ss_pred             -----------------------cCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHh-c
Q 041487          145 -----------------------VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYF-T  200 (218)
Q Consensus       145 -----------------------~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~-~  200 (218)
                                             ....|+|||... ...++.++|+||||++++++++|+.||...........+... .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~  239 (280)
T cd05581         161 NKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLN-EKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEY  239 (280)
T ss_pred             CCCCCccccccccccccccccccCCccccCHHHhC-CCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCC
Confidence                                   113489999544 445888999999999999999999999876433332222211 1


Q ss_pred             ccC--cccchhhhhhhccc
Q 041487          201 ALT--NYLVLPCFLSIMLL  217 (218)
Q Consensus       201 ~~~--~~~~~~~~~~~~l~  217 (218)
                      ..+  .+..+.+++..||+
T Consensus       240 ~~~~~~~~~~~~li~~~l~  258 (280)
T cd05581         240 SFPPNFPPDAKDLIEKLLV  258 (280)
T ss_pred             CCCCccCHHHHHHHHHHhc
Confidence            111  12345566666654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.86  E-value=4.5e-20  Score=145.47  Aligned_cols=146  Identities=28%  Similarity=0.501  Sum_probs=117.7

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CEEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RYVYLVF  119 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~  119 (218)
                      +|+..+.||+|++|.||+|.+..++..+++|.+..........+.+.+|+.++++++|+|++++++.+...  ...++++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            47889999999999999999988999999999876554445678899999999999999999999999888  8999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc-----------ccc----------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKE----------------  144 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~----------------  144 (218)
                      |++++ +|.+++......                           ++.+.           +.+                
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  160 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGT  160 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccc
Confidence            99965 998887665321                           11111           011                


Q ss_pred             ----cCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          145 ----VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       145 ----~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ....|++||.+ .....+.++||||||+++|++++|+.||...+
T Consensus       161 ~~~~~~~~y~~pE~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (260)
T cd06606         161 GSVRGTPYWMAPEVI-RGEEYGRAADIWSLGCTVIEMATGKPPWSELG  207 (260)
T ss_pred             cCCCCCccccCHhhh-cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                11238999954 44448999999999999999999999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.86  E-value=1.2e-20  Score=156.97  Aligned_cols=140  Identities=22%  Similarity=0.427  Sum_probs=109.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ....+|++.+.||+|+||.||+|.+..++..||+|+....        ....|+.++++++|+||+++++++......++
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~--------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  134 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG--------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCM  134 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc--------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEE
Confidence            4556799999999999999999999889999999975321        23468899999999999999999999999999


Q ss_pred             EEecCCCChHHHhhhcccC----------------------------Ccccc-----------ccccC------------
Q 041487          118 VFEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEVG------------  146 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g------------  146 (218)
                      |||++.++|.+++......                            ++++.           +.++|            
T Consensus       135 v~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  214 (357)
T PHA03209        135 VLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFL  214 (357)
T ss_pred             EEEccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccCcccc
Confidence            9999998998887653221                            22221           12222            


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCC-CCCCC
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK-PLFPC  186 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~-~Pf~~  186 (218)
                           ..|+|||.+ .+..++.++|||||||++|+|+++. .+|..
T Consensus       215 ~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~  259 (357)
T PHA03209        215 GLAGTVETNAPEVL-ARDKYNSKADIWSAGIVLFEMLAYPSTIFED  259 (357)
T ss_pred             cccccccccCCeec-CCCCCCchhhHHHHHHHHHHHHHcCCccccC
Confidence                 238999955 4455899999999999999999954 45543

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.86  E-value=9.7e-21  Score=155.63  Aligned_cols=142  Identities=23%  Similarity=0.350  Sum_probs=110.8

Q ss_pred             EEeeec--CceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQG--VFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G--~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      ..||+|  +||+||++.+..++..||+|++..........+.+.+|+.+++.++||||++++++|..++..++++||+.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            356666  999999999999999999999875543444457888999999999999999999999999999999999986


Q ss_pred             -ChHHHhhhcccC-----------------------------Ccccccc-------------------------------
Q 041487          125 -DLGSFIRKHTIT-----------------------------SIRPHIK-------------------------------  143 (218)
Q Consensus       125 -~L~~~~~~~~~~-----------------------------~~~~~~~-------------------------------  143 (218)
                       ++.+++......                             +++|.+.                               
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYD  163 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccccccc
Confidence             888877643211                             2222110                               


Q ss_pred             -----ccCCcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          144 -----EVGSPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       144 -----~~g~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                           ....+|+|||.+... ..++.++|||||||++|++++|+.||....
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~  214 (328)
T cd08226         164 FPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDML  214 (328)
T ss_pred             ccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcC
Confidence                 011249999976543 347899999999999999999999998753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.85  E-value=3.3e-20  Score=149.69  Aligned_cols=146  Identities=18%  Similarity=0.362  Sum_probs=113.7

Q ss_pred             ceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCC--CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNE--PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      +|++.+.||.|+||.||.|...   .++..||+|.++....  .....+++.+|+.+++++ +|++|+++++.+..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            5889999999999999999874   4788999999875432  233457788999999999 699999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccc-----------ccccc-----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HIKEV-----------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~~~~-----------  145 (218)
                      +++|||+++ +|.+++......                           ++++           .+.++           
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  160 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV  160 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccc
Confidence            999999987 888887654321                           1111           11122           


Q ss_pred             --------CCcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --------GSPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --------g~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ...|+|||.+... ..++.++||||||+++|++++|+.||...
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  211 (290)
T cd05613         161 ERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVD  211 (290)
T ss_pred             cccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcC
Confidence                    1238999976543 34678999999999999999999999754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.85  E-value=2.3e-21  Score=153.91  Aligned_cols=143  Identities=22%  Similarity=0.444  Sum_probs=107.4

Q ss_pred             EEeeecCceEEEEEEEccCCc-------EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           47 EKIGQGVFGEVYKCLNLETGK-------KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~-------~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      +.||+|+||.||+|..+..+.       .+++|.+...  .....+.+.+|+.+++.++|||++++++.+......++||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   78 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS--HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQ   78 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch--hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEE
Confidence            368999999999998765443       4888876532  2334567888999999999999999999999989999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-------------------ccccC-----
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-------------------IKEVG-----  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-------------------~~~~g-----  146 (218)
                      ||+++ +|.+++......                            ++++.                   ..++|     
T Consensus        79 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~  158 (258)
T cd05078          79 EYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITV  158 (258)
T ss_pred             ecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEeccccccccc
Confidence            99987 888888654321                            22221                   11111     


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhC-CCCCCCCCcch
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG-KPLFPCGKKDH  191 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg-~~Pf~~~~~~~  191 (218)
                               ..|+|||.+.....++.++|||||||++|++++| ..||...+...
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~  213 (258)
T cd05078         159 LPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQK  213 (258)
T ss_pred             CCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHH
Confidence                     2399999766556688999999999999999998 57776654443

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.85  E-value=3.3e-20  Score=148.27  Aligned_cols=140  Identities=26%  Similarity=0.368  Sum_probs=105.4

Q ss_pred             cceeEEEEe--eecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEE
Q 041487           41 WNYKVVEKI--GQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        41 ~~~~~~~~i--g~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ++|.+.+.+  |+|+||.||+++++.++..+|+|.+.......       .|+.+...+ +|||++++++.+...+..++
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-------~e~~~~~~~~~h~~iv~~~~~~~~~~~~~i   86 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA-------IEPMVHQLMKDNPNFIKLYYSVTTLKGHVL   86 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch-------hhHHHHHHhhcCCCEEEEEEEEecCCeeEE
Confidence            567776666  99999999999999999999999987543221       122222222 79999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Cccc------------cccccC-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRP------------HIKEVG-----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~------------~~~~~g-----------  146 (218)
                      ||||+++ +|.+++......                           ++++            .+.++|           
T Consensus        87 v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~  166 (267)
T PHA03390         87 IMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCY  166 (267)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccC
Confidence            9999986 999988765321                           1111            112222           


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                         ..|+|||.+ .+..++.++||||||+++|+|++|+.||....
T Consensus       167 ~~~~~y~aPE~~-~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~  210 (267)
T PHA03390        167 DGTLDYFSPEKI-KGHNYDVSFDWWAVGVLTYELLTGKHPFKEDE  210 (267)
T ss_pred             CCCCcccChhhh-cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence               249999965 44558899999999999999999999998653

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=6.3e-22  Score=165.32  Aligned_cols=149  Identities=32%  Similarity=0.568  Sum_probs=116.9

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      .+....|+++++||+|+.+.||++.. ...+.+|+|.+.-...+....+-+.+|+..|.++ .|.+|++++++-..++.+
T Consensus       357 ~Vkg~~Yeilk~iG~GGSSkV~kV~~-s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~l  435 (677)
T KOG0596|consen  357 KVKGREYEILKQIGSGGSSKVFKVLN-SDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYL  435 (677)
T ss_pred             EECcchhhHHHhhcCCCcceeeeeec-CCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceE
Confidence            34556699999999999999999985 3445666666554456666788999999999999 699999999999999999


Q ss_pred             EEEEecCCCChHHHhhhcccC----------------------------Ccccc----------cccc------------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT----------------------------SIRPH----------IKEV------------  145 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~----------~~~~------------  145 (218)
                      |+|||+-+.+|...+......                            +.+|.          ..+|            
T Consensus       436 YmvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVkG~LKLIDFGIA~aI~~DTTs  515 (677)
T KOG0596|consen  436 YMVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVKGRLKLIDFGIANAIQPDTTS  515 (677)
T ss_pred             EEEeecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEeeeEEeeeechhcccCccccc
Confidence            999999998998888765443                            22221          1222            


Q ss_pred             -------CC-cccCcccccCCCC----------CCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          146 -------GS-PYKAPESRIRSSV----------YSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       146 -------g~-~y~aPE~~~~~~~----------~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                             |+ .||+||.+.....          .+.++|||||||+||+|+-|+.||..
T Consensus       516 I~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~  574 (677)
T KOG0596|consen  516 IVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQ  574 (677)
T ss_pred             eeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHH
Confidence                   32 3999997644221          56789999999999999999999964

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.85  E-value=6.8e-22  Score=164.68  Aligned_cols=154  Identities=30%  Similarity=0.436  Sum_probs=125.9

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCCC
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLD  125 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~~  125 (218)
                      -++||.|-||+||-|.++++|+.||||++.+.+.+....+.+.+|+.+|+.+.||.||.+-.+|...+.+++|||-+.++
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            47899999999999999999999999999998888888899999999999999999999999999999999999999988


Q ss_pred             hHHHhhhcccC-----------------------------Cccccc------------------------------cccC
Q 041487          126 LGSFIRKHTIT-----------------------------SIRPHI------------------------------KEVG  146 (218)
Q Consensus       126 L~~~~~~~~~~-----------------------------~~~~~~------------------------------~~~g  146 (218)
                      +.+.|.+....                             +.+|.+                              +..|
T Consensus       649 MLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVG  728 (888)
T KOG4236|consen  649 MLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVG  728 (888)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcC
Confidence            87777654332                             333322                              1123


Q ss_pred             C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc
Q 041487          147 S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL  202 (218)
Q Consensus       147 ~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~  202 (218)
                      + +|+|||++.+.+ |...-|+||+||++|--++|.+||+-.  +.+...++....+
T Consensus       729 TPAYLaPEVLrnkG-yNrSLDMWSVGVIiYVsLSGTFPFNEd--EdIndQIQNAaFM  782 (888)
T KOG4236|consen  729 TPAYLAPEVLRNKG-YNRSLDMWSVGVIIYVSLSGTFPFNED--EDINDQIQNAAFM  782 (888)
T ss_pred             CccccCHHHHhhcc-ccccccceeeeEEEEEEecccccCCCc--cchhHHhhccccc
Confidence            3 399999665555 899999999999999999999999754  4444444443333

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.85  E-value=1.2e-20  Score=151.26  Aligned_cols=146  Identities=18%  Similarity=0.288  Sum_probs=107.8

Q ss_pred             EeeecCceEEEEEEEcc------------------------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCee
Q 041487           48 KIGQGVFGEVYKCLNLE------------------------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV  103 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~~------------------------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv  103 (218)
                      .||+|+||.||+|....                        ....|++|.+...  .......+.+|+.+++.++||||+
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~l~h~niv   79 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS--HRDIALAFFETASLMSQVSHIHLA   79 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH--HHHHHHHHHHHHHHHhcCCCCCee
Confidence            68999999999997432                        1235888887532  223345788889999999999999


Q ss_pred             eeeeeEEeCCEEEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-------------
Q 041487          104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-------------  141 (218)
Q Consensus       104 ~~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-------------  141 (218)
                      ++++++......++||||+++ +|.+++......                            ++++.             
T Consensus        80 ~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~  159 (274)
T cd05076          80 FVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGT  159 (274)
T ss_pred             eEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCc
Confidence            999999999999999999987 777776542111                            22221             


Q ss_pred             -----cccc--------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHH-hCCCCCCCCCcchHHHH
Q 041487          142 -----IKEV--------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMV-SGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       142 -----~~~~--------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~-tg~~Pf~~~~~~~~~~~  195 (218)
                           ..++              ..+|+|||.+.....++.++|||||||++|+++ +|+.||...........
T Consensus       160 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~  233 (274)
T cd05076         160 SPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERF  233 (274)
T ss_pred             cceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHH
Confidence                 1122              234999997766666899999999999999985 69999987655444443

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.85  E-value=1.6e-20  Score=152.07  Aligned_cols=145  Identities=24%  Similarity=0.460  Sum_probs=111.4

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      ....||+|+||.||++..+.++..+|+|.+...  .......+.+|+.+++.++|+|++++++.+...+..+++|||+++
T Consensus        24 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  101 (292)
T cd06657          24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLR--KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG  101 (292)
T ss_pred             hHHHcCCCCCeEEEEEEEcCCCeEEEEEEeccc--chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCC
Confidence            346899999999999999899999999987532  233456788999999999999999999999999999999999987


Q ss_pred             -ChHHHhhhcccC--------------------------Cccc-----------cccccC------------------Cc
Q 041487          125 -DLGSFIRKHTIT--------------------------SIRP-----------HIKEVG------------------SP  148 (218)
Q Consensus       125 -~L~~~~~~~~~~--------------------------~~~~-----------~~~~~g------------------~~  148 (218)
                       +|.+++......                          ++.+           .+.++|                  ..
T Consensus       102 ~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  181 (292)
T cd06657         102 GALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY  181 (292)
T ss_pred             CcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCcc
Confidence             777765432211                          1111           111221                  23


Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                      |+|||.+ ....++.++|+||+|+++|++++|+.||.+......
T Consensus       182 y~~pE~~-~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~  224 (292)
T cd06657         182 WMAPELI-SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA  224 (292)
T ss_pred             ccCHHHh-cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            8999954 455578999999999999999999999987644433

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.85  E-value=6.2e-21  Score=152.07  Aligned_cols=148  Identities=26%  Similarity=0.492  Sum_probs=110.7

Q ss_pred             EeeecCceEEEEEEEccCC------cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           48 KIGQGVFGEVYKCLNLETG------KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~~~~------~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      .||+|+||.||+|+.....      +.+++|.+.... .......+.+|+.+++.++||||+++++++......+++|||
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGA-TDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhccc-chhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            6899999999999876443      689999886432 223456788999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC----------------------------------Ccc----------------ccccccC----
Q 041487          122 LDL-DLGSFIRKHTIT----------------------------------SIR----------------PHIKEVG----  146 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~----------------------------------~~~----------------~~~~~~g----  146 (218)
                      +++ +|.+++......                                  +++                ....++|    
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~  160 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARD  160 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccc
Confidence            986 888887542100                                  111                1112222    


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                      ..|+|||.+. +..++.++|||||||++|+|++ |+.||...+.......+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~  227 (269)
T cd05044         161 IYKSDYYRKEGEGLLPVRWMAPESLL-DGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVT  227 (269)
T ss_pred             cccccccccCcccCCCccccCHHHHc-cCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHh
Confidence                            3489999654 4558999999999999999998 999998765444444433

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.85  E-value=1.2e-20  Score=152.76  Aligned_cols=149  Identities=26%  Similarity=0.450  Sum_probs=112.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccC--------------CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeee
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLET--------------GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVR  104 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~--------------~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~  104 (218)
                      ...+|++.+.||+|+||.||+|.+...              ...||+|.++.. ......+.+.+|+.++++++|+|+++
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           3 PRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRAD-VTKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             chHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            346899999999999999999986532              235899998643 22333467889999999999999999


Q ss_pred             eeeeEEeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------------------Ccccc---
Q 041487          105 LLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------------------SIRPH---  141 (218)
Q Consensus       105 ~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------------~~~~~---  141 (218)
                      +++++......+++|||+.+ +|.+++......                                       +++|.   
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil  161 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCL  161 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEE
Confidence            99999999999999999987 888887542100                                       11111   


Q ss_pred             --------ccccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh--CCCCCCCCCc
Q 041487          142 --------IKEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS--GKPLFPCGKK  189 (218)
Q Consensus       142 --------~~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t--g~~Pf~~~~~  189 (218)
                              ..++|                    ..|+|||.+. .+.++.++|||||||++|+|++  |..||.....
T Consensus       162 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~  238 (295)
T cd05097         162 VGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESIL-LGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSD  238 (295)
T ss_pred             EcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhc-cCCcCchhhHHHHHHHHHHHHHcCCCCCCcccCh
Confidence                    11111                    2499999654 4458999999999999999998  6678876543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.85  E-value=1.8e-20  Score=151.47  Aligned_cols=148  Identities=28%  Similarity=0.440  Sum_probs=114.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCC----------------cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCe
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETG----------------KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI  102 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~----------------~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i  102 (218)
                      ...+|++.+.||+|+||.||+|.+...+                ..+|+|.+..... ....+.+.+|+.++++++|||+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i   81 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS-DNAREDFLKEVKILSRLSDPNI   81 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC-HHHHHHHHHHHHHHHhcCCCCE
Confidence            3468999999999999999999875433                4689998864432 2345678899999999999999


Q ss_pred             eeeeeeEEeCCEEEEEEecCCC-ChHHHhhhccc-----------C---------------------------Cccccc-
Q 041487          103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTI-----------T---------------------------SIRPHI-  142 (218)
Q Consensus       103 v~~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~-----------~---------------------------~~~~~~-  142 (218)
                      +++++++..+...+++||++.+ +|.+++.....           .                           +++|.+ 
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Ni  161 (296)
T cd05051          82 ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNC  161 (296)
T ss_pred             eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhce
Confidence            9999999999999999999986 88888765431           0                           222221 


Q ss_pred             ----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh--CCCCCCCCC
Q 041487          143 ----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS--GKPLFPCGK  188 (218)
Q Consensus       143 ----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t--g~~Pf~~~~  188 (218)
                                .++|                    ..|+|||.+. ...++.++|||||||++|++++  |..||...+
T Consensus       162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05051         162 LVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVL-LGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT  238 (296)
T ss_pred             eecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhh-cCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC
Confidence                      1222                    1399999554 4458999999999999999998  778887653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.85  E-value=3.1e-20  Score=148.10  Aligned_cols=147  Identities=27%  Similarity=0.426  Sum_probs=114.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..+++.....||+|+||.||+|.+..++..+++|.+...  .....+.+.+|+.+++.++|+||+++++++..++..+++
T Consensus         6 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           6 EYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPER--DSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCC--CHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            344555667999999999999999888999999987643  223456789999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcc--c--C--------------------------Ccccc------------cccc----------
Q 041487          119 FEYLDL-DLGSFIRKHT--I--T--------------------------SIRPH------------IKEV----------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~--~--~--------------------------~~~~~------------~~~~----------  145 (218)
                      +||+++ +|.+++....  .  .                          ++++.            ..++          
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~  163 (268)
T cd06624          84 MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGIN  163 (268)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCC
Confidence            999986 9998876531  1  0                          11111            1111          


Q ss_pred             --------CCcccCcccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --------GSPYKAPESRIRSS-VYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --------g~~y~aPE~~~~~~-~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ...|+|||.+.... .++.++|+||||+++|++++|+.||...
T Consensus       164 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~  214 (268)
T cd06624         164 PCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIEL  214 (268)
T ss_pred             CccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccc
Confidence                    12489999764432 3788999999999999999999999765

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.85  E-value=2.3e-20  Score=150.06  Aligned_cols=143  Identities=25%  Similarity=0.399  Sum_probs=108.3

Q ss_pred             eeEEEEeeecCceEEEEEEE----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--CCEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLN----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--GRYVY  116 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~  116 (218)
                      |++++.||+|+||.||++..    ..++..||+|.++... .......+.+|+.++++++|||++++++++..  ...++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKREC-GQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQ   84 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEecccc-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEE
Confidence            48999999999999988653    3467899999987442 22345678899999999999999999998764  45689


Q ss_pred             EEEecCCC-ChHHHhhhcccC--------------------------Cccccc-----------cccC------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEVG------------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g------------  146 (218)
                      ++|||+++ +|.+++......                          +++|.+           .++|            
T Consensus        85 lv~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~  164 (283)
T cd05080          85 LIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY  164 (283)
T ss_pred             EEecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhh
Confidence            99999987 888887653221                          222221           1121            


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               ..|+|||.+ ....++.++||||||+++|+|+||+.||...
T Consensus       165 ~~~~~~~~~~~~~~PE~~-~~~~~~~~~Di~slG~~l~el~tg~~p~~~~  213 (283)
T cd05080         165 RVREDGDSPVFWYAVECL-KENKFSYASDVWSFGVTLYELLTHCDSKQSP  213 (283)
T ss_pred             ccCCCCCCCceeeCHhHh-cccCCCcccccHHHHHHHHHHHhCCCCCCCC
Confidence                     128899954 4455899999999999999999999998643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.85  E-value=3.5e-20  Score=152.54  Aligned_cols=147  Identities=32%  Similarity=0.521  Sum_probs=113.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccC--CcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe----CCE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLET--GKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT----GRY  114 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~----~~~  114 (218)
                      +|++.+.||+|+||.||++.+...  +..+|+|.++.........+.+.+|+.+++++ +||||+++++.+..    ...
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            588999999999999999999877  88999999875443444466788999999999 69999999987542    246


Q ss_pred             EEEEEecCCCChHHHhhhcccC---------------------------Ccccc-----------cccc-----------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPH-----------IKEV-----------  145 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------  145 (218)
                      .++++|++..+|.+++......                           +++|.           +.++           
T Consensus        81 ~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~  160 (332)
T cd07857          81 LYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPG  160 (332)
T ss_pred             EEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccc
Confidence            8999999988888777543221                           11211           1111           


Q ss_pred             ----------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                | ..|+|||.+.....++.++||||+||++|++++|++||...+
T Consensus       161 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~  214 (332)
T cd07857         161 ENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKD  214 (332)
T ss_pred             cccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCC
Confidence                      1 248999976655568999999999999999999999998753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.85  E-value=2.7e-20  Score=147.05  Aligned_cols=153  Identities=26%  Similarity=0.488  Sum_probs=118.0

Q ss_pred             eeEEEEeeecCceEEEEEEEccCC----cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETG----KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~----~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      +++.+.||+|+||.||+++....+    ..+|+|.++... .....+.+..|+.+++.++|+|++++++.+...+..+++
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i   79 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDA-DEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIV   79 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCC-ChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEE
Confidence            467889999999999999987766    899999986432 222567899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhccc---C--------------------------Cccccc-----------cc-------------
Q 041487          119 FEYLDL-DLGSFIRKHTI---T--------------------------SIRPHI-----------KE-------------  144 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~~-----------~~-------------  144 (218)
                      |||+++ +|.+++.....   .                          ++++.+           .+             
T Consensus        80 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~  159 (258)
T smart00219       80 MEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYY  159 (258)
T ss_pred             EeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceeccccccc
Confidence            999987 89888765332   1                          122211           11             


Q ss_pred             ------cCCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          145 ------VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       145 ------~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                            ....|+|||.+ ....++.++||||+|+++|+|++ |++||...+...+...+.
T Consensus       160 ~~~~~~~~~~y~~Pe~~-~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~  218 (258)
T smart00219      160 KKKGGKLPIRWMAPESL-KDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLK  218 (258)
T ss_pred             ccccCCCcccccChHHh-ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh
Confidence                  11348999955 55668999999999999999999 899998765554444444

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.85  E-value=2.2e-20  Score=159.83  Aligned_cols=138  Identities=20%  Similarity=0.330  Sum_probs=109.8

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ...+|.+.+.||+|+||.||+|.+...++.||+|...        ...+.+|+.++++++|+||+++++++...+..+++
T Consensus       167 ~~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~--------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv  238 (461)
T PHA03211        167 AGLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW--------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLV  238 (461)
T ss_pred             ccCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc--------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            4557999999999999999999999999999999532        12356899999999999999999999999999999


Q ss_pred             EecCCCChHHHhhhcccC----------------------------Ccccc-----------cccc--------------
Q 041487          119 FEYLDLDLGSFIRKHTIT----------------------------SIRPH-----------IKEV--------------  145 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~~~----------------------------~~~~~-----------~~~~--------------  145 (218)
                      ||++.++|.+++......                            ++++.           +.+|              
T Consensus       239 ~e~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~  318 (461)
T PHA03211        239 LPKYRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPF  318 (461)
T ss_pred             EEccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceeccccccccc
Confidence            999988888887643211                            22221           1112              


Q ss_pred             -----C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          146 -----G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       146 -----g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                           | ..|+|||.+ .+..++.++|||||||++|||++|..|+.
T Consensus       319 ~~~~~GT~~Y~APE~~-~~~~~~~~sDvwSlGviL~El~~g~~~lf  363 (461)
T PHA03211        319 HYGIAGTVDTNAPEVL-AGDPYTPSVDIWSAGLVIFEAAVHTASLF  363 (461)
T ss_pred             ccccCCCcCCcCHHHH-cCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence                 2 249999965 45568999999999999999999876543

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.85  E-value=2.5e-20  Score=150.97  Aligned_cols=151  Identities=20%  Similarity=0.359  Sum_probs=112.8

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~  114 (218)
                      ..+..++|++.+.||+|++|.||+|.+..++..+|+|.++..... .....+.+|+.++.+. .|+||+++++++.....
T Consensus        10 ~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~   88 (296)
T cd06618          10 YPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNK-EENKRILMDLDVVLKSHDCPYIVKCYGYFITDSD   88 (296)
T ss_pred             ccCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCCh-HHHHHHHHHHHHHHhccCCCchHhhheeeecCCe
Confidence            346678899999999999999999999888999999998754322 2344566677666666 59999999999999999


Q ss_pred             EEEEEecCCCChHHHhhhcccC-----------------------------Cccc-----------cccccC--------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRP-----------HIKEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~-----------~~~~~g--------  146 (218)
                      .+++|||+.+.+.++.......                             ++++           .+.++|        
T Consensus        89 ~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~  168 (296)
T cd06618          89 VFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDS  168 (296)
T ss_pred             EEEEeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCC
Confidence            9999999986665544331100                             1111           112221        


Q ss_pred             ---------CcccCcccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------SPYKAPESRIRS---SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------~~y~aPE~~~~~---~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               ..|+|||.+...   ..++.++||||||+++|+|++|+.||...
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  221 (296)
T cd06618         169 KAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNC  221 (296)
T ss_pred             CcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcc
Confidence                     248999965433   33788999999999999999999999764

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.85  E-value=1.1e-20  Score=149.57  Aligned_cols=145  Identities=26%  Similarity=0.429  Sum_probs=111.0

Q ss_pred             EEeeecCceEEEEEEEcc-CC--cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           47 EKIGQGVFGEVYKCLNLE-TG--KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~-~~--~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      +.||+|++|.||+|.+.. .+  ..+|+|.++..... ...+.+.+|+.++++++||||+++++.+.. ...+++|||++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH-HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecC
Confidence            368999999999998755 33  36999998754433 556789999999999999999999999988 89999999997


Q ss_pred             C-ChHHHhhhccc--C---------------------------Cccccc-----------cccC----------------
Q 041487          124 L-DLGSFIRKHTI--T---------------------------SIRPHI-----------KEVG----------------  146 (218)
Q Consensus       124 ~-~L~~~~~~~~~--~---------------------------~~~~~~-----------~~~g----------------  146 (218)
                      + +|.+++.....  .                           +++|.+           .++|                
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  158 (257)
T cd05040          79 LGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEE  158 (257)
T ss_pred             CCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceeccc
Confidence            6 99988866431  0                           122211           1221                


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~  194 (218)
                           ..|+|||. ..+..++.++|||||||++|+|++ |+.||...+...+..
T Consensus       159 ~~~~~~~y~~pE~-~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~  211 (257)
T cd05040         159 HLKVPFAWCAPES-LRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILK  211 (257)
T ss_pred             CCCCCceecCHHH-hcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence                 24899995 445558999999999999999999 999997664444433

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.85  E-value=1.5e-20  Score=150.08  Aligned_cols=140  Identities=21%  Similarity=0.350  Sum_probs=104.7

Q ss_pred             EeeecCceEEEEEEEcc--CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           48 KIGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      .||+|+||.||+|....  ....+++|.+... ........+.+|+.+++.++|+||+++++.+......+++|||+++ 
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRAS-ATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCcc-CChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            68999999999996532  3457888877532 2233345678899999999999999999999999999999999987 


Q ss_pred             ChHHHhhhcccC--------------------------------Ccccc-----------ccccC---------------
Q 041487          125 DLGSFIRKHTIT--------------------------------SIRPH-----------IKEVG---------------  146 (218)
Q Consensus       125 ~L~~~~~~~~~~--------------------------------~~~~~-----------~~~~g---------------  146 (218)
                      +|.+++......                                +++|.           +.++|               
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  160 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKD  160 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccC
Confidence            998887653210                                12221           12222               


Q ss_pred             -----CcccCcccccC------CCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC
Q 041487          147 -----SPYKAPESRIR------SSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK  188 (218)
Q Consensus       147 -----~~y~aPE~~~~------~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~  188 (218)
                           ..|+|||.+..      ...++.++|||||||++|+|++ |..||....
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~  214 (269)
T cd05042         161 CHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLS  214 (269)
T ss_pred             CCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCC
Confidence                 13999996532      2346789999999999999999 789998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.85  E-value=1.2e-19  Score=142.54  Aligned_cols=143  Identities=29%  Similarity=0.518  Sum_probs=115.4

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      +|.+.+.||+|++|.||++.+..++..+++|.+.....  ...+.+.+|+.+++.++|++++++++.+......++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~   78 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK--EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEF   78 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch--hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEec
Confidence            47889999999999999999988899999999875433  3567899999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcc-c-C--------------------------Cccccc-----------ccc----------------
Q 041487          122 LDL-DLGSFIRKHT-I-T--------------------------SIRPHI-----------KEV----------------  145 (218)
Q Consensus       122 ~~~-~L~~~~~~~~-~-~--------------------------~~~~~~-----------~~~----------------  145 (218)
                      +++ +|.+++.... . .                          ++.+.+           .++                
T Consensus        79 ~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~  158 (253)
T cd05122          79 CSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMV  158 (253)
T ss_pred             CCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccccccee
Confidence            995 9998876651 1 1                          111111           111                


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                       ...|++||.+ .+..++.++|+||||+++|++++|+.||...
T Consensus       159 ~~~~~~~PE~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         159 GTPYWMAPEVI-NGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             cCCcccCHHHH-cCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence             1238999954 4445889999999999999999999999866

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.85  E-value=3.1e-20  Score=148.07  Aligned_cols=149  Identities=30%  Similarity=0.542  Sum_probs=111.5

Q ss_pred             ceeEEEEeeecCceEEEEEEEcc-CCcEEEEEEeecCCC--------CCCchHHHHHHHHHHhh-CCCCCeeeeeeeEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLE-TGKKVAIKMINIQNE--------PEGVPSYLIAGVSLLKE-LEHDNIVRLLDVLTT  111 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~-~~~~vaiK~~~~~~~--------~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~  111 (218)
                      +|++.+.||+|+||.||+|.+.. .+..+|+|.+.....        .......+.+|+.++.+ ++|+|++++++.+..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            48889999999999999999877 678999998864321        12234567778887765 699999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhc---cc-C----------------------------Ccccc-----------ccccC-
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKH---TI-T----------------------------SIRPH-----------IKEVG-  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~---~~-~----------------------------~~~~~-----------~~~~g-  146 (218)
                      ++..+++|||+++ +|.+++...   .. .                            ++.+.           ..++| 
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~  160 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL  160 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence            9999999999986 887776321   00 0                            11111           11221 


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                                      ..|++||.+. +..++.++|+||||+++|++++|+.||...+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~  220 (269)
T cd08528         161 AKQKQPESKLTSVVGTILYSCPEIVK-NEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLS  220 (269)
T ss_pred             eeecccccccccccCcccCcChhhhc-CCCCchHHHHHHHHHHHHHHHhCCCcccccCHHH
Confidence                            2389999654 4558999999999999999999999997664433

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.84  E-value=1.9e-20  Score=150.17  Aligned_cols=146  Identities=27%  Similarity=0.460  Sum_probs=113.4

Q ss_pred             ccceeEEEEeeecCceEEEEEEEc----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--CC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNL----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--GR  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~  113 (218)
                      ...|++.+.||+|+||.||+|...    .++..+|+|.++..... ...+.+.+|+.+++.++|+|++++++++..  ..
T Consensus         3 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~   81 (284)
T cd05038           3 KRHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR   81 (284)
T ss_pred             hhhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch-HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence            356888999999999999999864    34789999998754332 346789999999999999999999999876  66


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------ccc--------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEV--------  145 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~--------  145 (218)
                      ..+++|||+++ +|.+++......                            ++++.+           .++        
T Consensus        82 ~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPE  161 (284)
T ss_pred             ceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccccccc
Confidence            89999999976 999888654411                            122111           111        


Q ss_pred             -------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                   ...|++||.+. ...++.++||||||+++|+|+||+.||...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~Di~slG~~l~el~tg~~p~~~~  215 (284)
T cd05038         162 DKDYYYVKEPGESPIFWYAPECLR-TSKFSSASDVWSFGVTLYELFTYGDPSQSP  215 (284)
T ss_pred             CCcceeccCCCCCcccccCcHHHc-cCCCCcccchHHHhhhhheeeccCCCcccc
Confidence                         12388999654 445889999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.84  E-value=3.4e-20  Score=150.17  Aligned_cols=147  Identities=25%  Similarity=0.427  Sum_probs=111.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEcc----------------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCee
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLE----------------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV  103 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~----------------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv  103 (218)
                      .++|++.+.||+|+||.||++.+..                +...+|+|.+... ......+.+.+|+.+++.++|+||+
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLRED-ANKNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCcc
Confidence            4579999999999999999985432                3456899988643 2233456788999999999999999


Q ss_pred             eeeeeEEeCCEEEEEEecCCC-ChHHHhhhcccC--------------------------------------Cccccc--
Q 041487          104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT--------------------------------------SIRPHI--  142 (218)
Q Consensus       104 ~~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~--------------------------------------~~~~~~--  142 (218)
                      ++++++...+..+++|||+++ +|.+++......                                      +++|.+  
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nil  162 (296)
T cd05095          83 RLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCL  162 (296)
T ss_pred             eEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEE
Confidence            999999999999999999986 898887653210                                      222221  


Q ss_pred             ---------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh--CCCCCCCCC
Q 041487          143 ---------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS--GKPLFPCGK  188 (218)
Q Consensus       143 ---------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t--g~~Pf~~~~  188 (218)
                               .++|                    ..|++||... .+.++.++|||||||++|+|++  |..||...+
T Consensus       163 i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~-~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05095         163 VGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESIL-LGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS  238 (296)
T ss_pred             EcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHh-cCCccchhhhhHHHHHHHHHHHhCCCCCccccC
Confidence                     1111                    2488999654 4458999999999999999998  778987653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.84  E-value=2.4e-22  Score=161.23  Aligned_cols=165  Identities=27%  Similarity=0.578  Sum_probs=132.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC--C----CeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH--D----NIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h--~----~iv~~~~~~~~  111 (218)
                      ....+|.+...+|+|.||.|..+.++.++..||+|+++.   -....+....|+.+++++.+  |    -++.+.++|.-
T Consensus        86 ~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~---V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy  162 (415)
T KOG0671|consen   86 ILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKN---VDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDY  162 (415)
T ss_pred             ccccceehhhhhcCCcccceEEEeecCCCceehHHHHHH---HHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc
Confidence            346789999999999999999999999999999999873   23445667789999999932  2    27788888999


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC-----------------------------Cccccc--------------------
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI--------------------  142 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~--------------------  142 (218)
                      .+..|+|.|.++.++.||++.....                             +.+|.+                    
T Consensus       163 rghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~  242 (415)
T KOG0671|consen  163 RGHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCF  242 (415)
T ss_pred             cCceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccce
Confidence            9999999999999999999885443                             222221                    


Q ss_pred             -----------cccCCc---------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHH
Q 041487          143 -----------KEVGSP---------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLI  195 (218)
Q Consensus       143 -----------~~~g~~---------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~  195 (218)
                                 .+||++               |.|||++. +-.++.++||||+||+|+|++||...|+.. +.++++.+
T Consensus       243 ~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViL-gLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMM  321 (415)
T KOG0671|consen  243 IRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVIL-GLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMM  321 (415)
T ss_pred             eccCCCcceEEEecCCcceeccCcceeeeccccCCchhee-ccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHH
Confidence                       234443               99999655 445999999999999999999999999988 77888888


Q ss_pred             HHHhcccCccc
Q 041487          196 VRYFTALTNYL  206 (218)
Q Consensus       196 ~~~~~~~~~~~  206 (218)
                      .+.+|++|..+
T Consensus       322 erIlGp~P~~m  332 (415)
T KOG0671|consen  322 ERILGPIPSRM  332 (415)
T ss_pred             HHhhCCCcHHH
Confidence            88888665543

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=4.6e-22  Score=168.75  Aligned_cols=173  Identities=22%  Similarity=0.348  Sum_probs=128.9

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      .+.|++.||-|+||.||+|..+.++...|-|++...  ..+..+.+.-|+++|..++||+||++++.|...+.+|++.||
T Consensus        33 ~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetk--seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEF  110 (1187)
T KOG0579|consen   33 HWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK--SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEF  110 (1187)
T ss_pred             HHHHHhhhcCccchhhhhhhcccchhhhhhhhhccc--chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEee
Confidence            468899999999999999999989999999998633  445577888999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC----------------------------Ccccc----------------------------ccc
Q 041487          122 LDL-DLGSFIRKHTIT----------------------------SIRPH----------------------------IKE  144 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~----------------------------~~~~~----------------------------~~~  144 (218)
                      |.| .+...+...+..                            +.+..                            -..
T Consensus       111 C~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsF  190 (1187)
T KOG0579|consen  111 CGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSF  190 (1187)
T ss_pred             cCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchhHHhhhccc
Confidence            976 333333322111                            11111                            123


Q ss_pred             cCCc-ccCcccc----cCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccC--cccchhhhhhhcc
Q 041487          145 VGSP-YKAPESR----IRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT--NYLVLPCFLSIML  216 (218)
Q Consensus       145 ~g~~-y~aPE~~----~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l  216 (218)
                      +|++ |||||++    +.+.+|+.++||||||++|.+|+-+.+|-...++......+..-.+|+  .+..|++..++.|
T Consensus       191 IGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfL  269 (1187)
T KOG0579|consen  191 IGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFL  269 (1187)
T ss_pred             cCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHH
Confidence            4555 7999964    446789999999999999999999999988776666555555444442  2455555555443

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.84  E-value=2.7e-20  Score=151.33  Aligned_cols=158  Identities=22%  Similarity=0.359  Sum_probs=116.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCc----EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +...+|+..+.||+|+||.||+|.+..++.    .+|+|.+.... .......+.+|+.+++.++||||+++++++... 
T Consensus         4 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-   81 (303)
T cd05110           4 LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT-GPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-   81 (303)
T ss_pred             cchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-
Confidence            456789999999999999999999877665    46888875332 222234678899999999999999999998654 


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------ccc--------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEV--------  145 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~--------  145 (218)
                      ..++++||+++ +|.+++......                            +++|.+           .++        
T Consensus        82 ~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~  161 (303)
T cd05110          82 TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEG  161 (303)
T ss_pred             CceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccC
Confidence            46789999986 888887654211                            222211           111        


Q ss_pred             ------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          146 ------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 ------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                  ...|+|||.+ .+..++.++|||||||++|++++ |+.||.+.........++.
T Consensus       162 ~~~~~~~~~~~~~~~y~~PE~~-~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~  226 (303)
T cd05110         162 DEKEYNADGGKMPIKWMALECI-HYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEK  226 (303)
T ss_pred             cccccccCCCccccccCCHHHh-ccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHC
Confidence                        1249999954 55668999999999999999998 9999987655555554443

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.84  E-value=2.9e-20  Score=148.48  Aligned_cols=154  Identities=22%  Similarity=0.385  Sum_probs=112.4

Q ss_pred             eeEEEEeeecCceEEEEEEEcc---CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------C
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLE---TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------R  113 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~  113 (218)
                      |++.+.||+|+||.||+|..+.   +++.+|+|.+..........+.+.+|+.++++++|||++++++++...      .
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            6778899999999999998643   578999999976554555567788999999999999999999987532      2


Q ss_pred             EEEEEEecCCC-ChHHHhhhccc------C---------------------------Cccccc-----------cccC--
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTI------T---------------------------SIRPHI-----------KEVG--  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~------~---------------------------~~~~~~-----------~~~g--  146 (218)
                      ..++++||+.+ +|.+++.....      .                           +++|.+           .++|  
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~  160 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLS  160 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccccc
Confidence            35788999876 88777532110      0                           111111           1111  


Q ss_pred             ------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                        ..|++||.+ .+..++.++|||||||++|++++ |++||...+...+...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~-~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~  229 (273)
T cd05074         161 KKIYSGDYYRQGCASKLPVKWLALESL-ADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLI  229 (273)
T ss_pred             ccccCCcceecCCCccCchhhcCHhHH-hcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHH
Confidence                              237889954 45557889999999999999999 899998776555544443

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.84  E-value=2e-20  Score=154.78  Aligned_cols=95  Identities=24%  Similarity=0.441  Sum_probs=76.5

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT  110 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~  110 (218)
                      .+..++|++.+.||+|+||.||+|.+.     .+++.||+|.++... .......+.+|+.++.++ .|+||+++++.+.
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~   81 (343)
T cd05103           3 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNLLGACT   81 (343)
T ss_pred             ccchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCC-ChHHHHHHHHHHHHHHhccCCccHhhhcceee
Confidence            345678999999999999999999853     356789999987432 233356788999999999 6899999999875


Q ss_pred             -eCCEEEEEEecCCC-ChHHHhhh
Q 041487          111 -TGRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus       111 -~~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                       .+..++++|||+++ +|.+++..
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~i~~  105 (343)
T cd05103          82 KPGGPLMVIVEFCKFGNLSNYLRS  105 (343)
T ss_pred             cCCCceEEEEeccCCCcHHHHHHh
Confidence             45578999999987 88888754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.84  E-value=3.2e-20  Score=147.37  Aligned_cols=148  Identities=24%  Similarity=0.441  Sum_probs=105.9

Q ss_pred             EEeeecCceEEEEEEEcc---CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE-eCCEEEEEEecC
Q 041487           47 EKIGQGVFGEVYKCLNLE---TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT-TGRYVYLVFEYL  122 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~lv~E~~  122 (218)
                      +.||+|+||.||+|....   ....+|+|.+... ......+.+.+|+.+++.++|||++++++++. .++..+++|||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRI-TDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCcc-CCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecC
Confidence            368999999999998653   3457999987532 22234567888999999999999999999765 566789999999


Q ss_pred             CC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC----------------
Q 041487          123 DL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG----------------  146 (218)
Q Consensus       123 ~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g----------------  146 (218)
                      .+ +|.+++......                            ++++.           ..++|                
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~  159 (262)
T cd05058          80 KHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNH  159 (262)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeeccc
Confidence            86 898887543211                            11111           11222                


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                            ..|+|||.+. ...++.++|||||||++|+|++ |.+||...+...+...+
T Consensus       160 ~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~  215 (262)
T cd05058         160 TGAKLPVKWMALESLQ-TQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYL  215 (262)
T ss_pred             ccCcCCccccChhHhc-cCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence                  1389999554 4558899999999999999999 56778765544444333

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.84  E-value=5.5e-20  Score=147.84  Aligned_cols=144  Identities=30%  Similarity=0.472  Sum_probs=109.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEE----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLN----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGR  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~  113 (218)
                      ..+|++++.||+|+||.||.+..    ..++..|++|.+...  .....+.+.+|+.+++.++|||++++++++.  ...
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS--TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   80 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCC
Confidence            35799999999999999999974    356789999997632  3334567889999999999999999999875  345


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------  146 (218)
                      .++++|||+++ +|.+++......                            ++++.           +.++|       
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~  160 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccC
Confidence            78999999976 999988653211                            11111           11111       


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                    ..|+|||.+ .+..++.++|||||||++|+|++|..|+..
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~el~~~~~~~~~  213 (284)
T cd05081         161 DKEYYKVREPGESPIFWYAPESL-TESKFSVASDVWSFGVVLYELFTYSDKSCS  213 (284)
T ss_pred             CCcceeecCCCCCceEeeCHHHh-ccCCcChHHHHHHHHHHHHHHhhcCCcCCC
Confidence                          238999955 455588999999999999999998877643

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.84  E-value=7.8e-22  Score=152.62  Aligned_cols=163  Identities=17%  Similarity=0.304  Sum_probs=122.4

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG  112 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~  112 (218)
                      +.+..+.++.++++.||.|+.|.||+++.+.+|...|||.+++.. ..+..++++..+.++... +.|+||+.+++|..+
T Consensus        85 ~r~~~dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~-Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n  163 (391)
T KOG0983|consen   85 QRYQADINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTG-NKEENKRILMDLDVVLKSHDCPYIVQCFGYFITN  163 (391)
T ss_pred             cccccChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccC-CHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeC
Confidence            344456677888999999999999999999999999999998653 334467788888766655 689999999999999


Q ss_pred             CEEEEEEecCCC--------------------------ChHHHhhhccc---CCcccccc--------------------
Q 041487          113 RYVYLVFEYLDL--------------------------DLGSFIRKHTI---TSIRPHIK--------------------  143 (218)
Q Consensus       113 ~~~~lv~E~~~~--------------------------~L~~~~~~~~~---~~~~~~~~--------------------  143 (218)
                      ..+++.||.|.-                          +-.+|++.+..   .+.+|.+.                    
T Consensus       164 ~dV~IcMelMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlv  243 (391)
T KOG0983|consen  164 TDVFICMELMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLV  243 (391)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceee
Confidence            999999998741                          11233332211   13444331                    


Q ss_pred             -------cc-CCcccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCC--CcchHHHHHH
Q 041487          144 -------EV-GSPYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG--KKDHLSLIVR  197 (218)
Q Consensus       144 -------~~-g~~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~--~~~~~~~~~~  197 (218)
                             .. ..+|||||.+--  ...|+.++||||||++++|++||+.||.+.  +.+.+..+..
T Consensus       244 dSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln  309 (391)
T KOG0983|consen  244 DSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLN  309 (391)
T ss_pred             cccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHh
Confidence                   11 234999996533  344999999999999999999999999985  7777777766

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.84  E-value=2.4e-20  Score=154.06  Aligned_cols=93  Identities=25%  Similarity=0.446  Sum_probs=74.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE-e
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT-T  111 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~-~  111 (218)
                      -.++|++.+.||+|+||.||+|....     ++..||+|.++... .....+.+.+|+.+++++ +|+||+++++++. .
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~   83 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGA-TASEYKALMTELKILIHIGHHLNVVNLLGACTKP   83 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCC-CHHHHHHHHHHHHHHHhhccCcchhheeeeEecC
Confidence            34679999999999999999997433     45789999986432 223345678899999999 8999999999886 4


Q ss_pred             CCEEEEEEecCCC-ChHHHhhh
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                      +..++++|||+++ +|.+++..
T Consensus        84 ~~~~~~v~ey~~~~~L~~~i~~  105 (337)
T cd05054          84 GGPLMVIVEYCKFGNLSNYLRS  105 (337)
T ss_pred             CCCEEEEEecCCCCCHHHHHHh
Confidence            5678999999987 88888753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.84  E-value=5.3e-20  Score=146.64  Aligned_cols=144  Identities=20%  Similarity=0.328  Sum_probs=106.4

Q ss_pred             EEeeecCceEEEEEEEcc------------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           47 EKIGQGVFGEVYKCLNLE------------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~------------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      +.||+|+||.||+|....            ....+++|.+...  .......+.+|+.+++.++||||+++++++.....
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~   78 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS--HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVE   78 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh--hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            368999999999997432            2235888886532  23345678889999999999999999999998889


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc------------------cccC-
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI------------------KEVG-  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~------------------~~~g-  146 (218)
                      .+++|||+++ +|..++......                            +++|.+                  .++| 
T Consensus        79 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~  158 (262)
T cd05077          79 NIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGI  158 (262)
T ss_pred             CEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCC
Confidence            9999999987 777766543211                            222211                  1222 


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHH-hCCCCCCCCCcchH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMV-SGKPLFPCGKKDHL  192 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~-tg~~Pf~~~~~~~~  192 (218)
                                   .+|+|||.+..+..++.++|||||||++|+|+ +|..||........
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~  218 (262)
T cd05077         159 PITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK  218 (262)
T ss_pred             CccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH
Confidence                         24999997665677899999999999999997 58999987644433

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=2.9e-20  Score=153.40  Aligned_cols=91  Identities=26%  Similarity=0.445  Sum_probs=73.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-----C---CCeeeeeeeEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-----H---DNIVRLLDVLT  110 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-----h---~~iv~~~~~~~  110 (218)
                      ...+|.+.++||+|-|++||+|-+....+.||+|+.+.   .+...+....|+.+|+++.     |   .+||++++.|.
T Consensus        76 ~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKS---AqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk  152 (590)
T KOG1290|consen   76 NGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKS---AQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK  152 (590)
T ss_pred             cCceEEEEEeccccccceeEEEeeccCCeEEEEEEEeh---hhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence            44779999999999999999999999999999999874   3455677888999998872     2   36999999996


Q ss_pred             ----eCCEEEEEEecCCCChHHHhhh
Q 041487          111 ----TGRYVYLVFEYLDLDLGSFIRK  132 (218)
Q Consensus       111 ----~~~~~~lv~E~~~~~L~~~~~~  132 (218)
                          .+.++|+|+|+....|..+|..
T Consensus       153 hsGpNG~HVCMVfEvLGdnLLklI~~  178 (590)
T KOG1290|consen  153 HSGPNGQHVCMVFEVLGDNLLKLIKY  178 (590)
T ss_pred             ecCCCCcEEEEEehhhhhHHHHHHHH
Confidence                5668999999985455444443

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.84  E-value=5.1e-20  Score=145.93  Aligned_cols=148  Identities=25%  Similarity=0.441  Sum_probs=114.6

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-Ch
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DL  126 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L  126 (218)
                      ||.|+||.||++.+..+++.+++|.++.... .....+.+.+|+.++++++|+|++++++.+......++++||+.+ +|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            6899999999999988899999999875432 234567888999999999999999999999999999999999986 88


Q ss_pred             HHHhhhcccC---------------------------Ccccc-----------cccc-----------------------
Q 041487          127 GSFIRKHTIT---------------------------SIRPH-----------IKEV-----------------------  145 (218)
Q Consensus       127 ~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------------------  145 (218)
                      .+++......                           ++.+.           ..++                       
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  160 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKR  160 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccC
Confidence            8887654321                           11111           1111                       


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                         ...|++||.... ...+.++|+||||+++|++++|+.||.............
T Consensus       161 ~~~~~~~~~Pe~~~~-~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~  214 (265)
T cd05579         161 IVGTPDYIAPEVILG-QGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNIL  214 (265)
T ss_pred             cccCccccCHHHhcC-CCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence               123899996544 447889999999999999999999998776555444433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.84  E-value=5.8e-20  Score=146.67  Aligned_cols=143  Identities=22%  Similarity=0.320  Sum_probs=105.8

Q ss_pred             EEeeecCceEEEEEEEc--cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNL--ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.||+|+||.||+|...  .++..+++|.++.... ......+.+|+.++++++|||++++++.+......++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS-VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPL   79 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCC-hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCC
Confidence            36899999999999754  3456799998764432 22345788899999999999999999999988899999999986


Q ss_pred             -ChHHHhhhcccC--------------------------------Ccccc-----------ccccC--------------
Q 041487          125 -DLGSFIRKHTIT--------------------------------SIRPH-----------IKEVG--------------  146 (218)
Q Consensus       125 -~L~~~~~~~~~~--------------------------------~~~~~-----------~~~~g--------------  146 (218)
                       +|.+++......                                ++++.           ..++|              
T Consensus        80 g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~  159 (269)
T cd05087          80 GDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTP  159 (269)
T ss_pred             CcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecC
Confidence             898887542110                                11111           11222              


Q ss_pred             ------CcccCcccccCC------CCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcc
Q 041487          147 ------SPYKAPESRIRS------SVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKD  190 (218)
Q Consensus       147 ------~~y~aPE~~~~~------~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~  190 (218)
                            ..|+|||.+...      ..++.++||||||+++|+|++ |+.||...+..
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~  216 (269)
T cd05087         160 DQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDE  216 (269)
T ss_pred             CCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChH
Confidence                  239999965432      135789999999999999997 99999865433

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=2.9e-20  Score=172.42  Aligned_cols=140  Identities=26%  Similarity=0.432  Sum_probs=108.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ..++..+.||+|+||.||+|..+.++..||+|.++....      ....|+.++++++||||+++++++......++|||
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~E  763 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS------IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHE  763 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc------ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEe
Confidence            457778899999999999999988999999998863221      12345788999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhccc---------------------------CCcccccc-----------------------c-cCCc
Q 041487          121 YLDL-DLGSFIRKHTI---------------------------TSIRPHIK-----------------------E-VGSP  148 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~---------------------------~~~~~~~~-----------------------~-~g~~  148 (218)
                      |+++ +|.+++.....                           .++++.+.                       . ....
T Consensus       764 y~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~t~~  843 (968)
T PLN00113        764 YIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFISSA  843 (968)
T ss_pred             CCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEEeccccccccCCCcccccc
Confidence            9986 88887743110                           02222110                       0 0135


Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      |+|||.+ .+..++.++|||||||++|||+||+.||+..
T Consensus       844 y~aPE~~-~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~  881 (968)
T PLN00113        844 YVAPETR-ETKDITEKSDIYGFGLILIELLTGKSPADAE  881 (968)
T ss_pred             ccCcccc-cCCCCCcccchhhHHHHHHHHHhCCCCCCcc
Confidence            9999954 4556899999999999999999999999643

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.83  E-value=7.1e-20  Score=144.25  Aligned_cols=147  Identities=27%  Similarity=0.427  Sum_probs=113.9

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-Ch
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DL  126 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L  126 (218)
                      ||+|++|.||++.+..++..+++|.++..... ......+..|+.+++.++|+|++++++.+..+...+++||++.+ +|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            68999999999999888999999998765432 23566889999999999999999999999999999999999954 99


Q ss_pred             HHHhhhcccC---------------------------Cccccc-----------ccc------------------CCccc
Q 041487          127 GSFIRKHTIT---------------------------SIRPHI-----------KEV------------------GSPYK  150 (218)
Q Consensus       127 ~~~~~~~~~~---------------------------~~~~~~-----------~~~------------------g~~y~  150 (218)
                      .+++......                           ++.+.+           .++                  ...|.
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~  160 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYL  160 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCcccc
Confidence            8888654321                           111111           111                  22489


Q ss_pred             CcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          151 APESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       151 aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                      +||.. .+...+.++|+||||+++|++++|+.||...+...+...+
T Consensus       161 ~Pe~~-~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~  205 (250)
T cd05123         161 APEVL-LGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKI  205 (250)
T ss_pred             ChHHh-CCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence            99954 4444788999999999999999999999876544443333

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.83  E-value=3.2e-20  Score=162.00  Aligned_cols=145  Identities=25%  Similarity=0.461  Sum_probs=113.8

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE-----eCC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT-----TGR  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~-----~~~  113 (218)
                      .+-|.+.++||.|.+|.||+++.+++++.+|+|+....   .+..+.+..|..+++.+ .|||+++++++|.     .++
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~---~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~D   94 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT---EDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGD   94 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCC---ccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCC
Confidence            35689999999999999999999999999999997643   33346677888889888 7999999999985     467


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-----------------------------Ccccc----------------------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPH----------------------  141 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~----------------------  141 (218)
                      .+|+|||||.+ +..|.++.....                             +++-.                      
T Consensus        95 qLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQld  174 (953)
T KOG0587|consen   95 QLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  174 (953)
T ss_pred             eEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeee
Confidence            89999999987 888887654321                             11100                      


Q ss_pred             ------ccccCCc-ccCcccccCC----CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          142 ------IKEVGSP-YKAPESRIRS----SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       142 ------~~~~g~~-y~aPE~~~~~----~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                            +...|++ |||||++.-.    ..|+.++|+||||++..||.-|.+|+-.+
T Consensus       175 sT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~Dm  231 (953)
T KOG0587|consen  175 STVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDM  231 (953)
T ss_pred             cccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCc
Confidence                  1223444 8999976543    33778999999999999999999999654

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.83  E-value=7.9e-20  Score=145.05  Aligned_cols=147  Identities=22%  Similarity=0.391  Sum_probs=109.9

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC---CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN---EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      +|.+.+.||+|+||.||++.+...+..+++|.++...   ........+..|+.+++.++|||++++++.+......+++
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            5889999999999999999987777666666654322   2233445677888999999999999999999988899999


Q ss_pred             EecCCC-ChHHHhhhccc----C---------------------------Ccccc----------ccccC----------
Q 041487          119 FEYLDL-DLGSFIRKHTI----T---------------------------SIRPH----------IKEVG----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~----~---------------------------~~~~~----------~~~~g----------  146 (218)
                      +||+.+ +|.+++.....    .                           ++++.          ..++|          
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~~~~~l~d~g~~~~~~~~~~  160 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKNNLLKIGDFGVSRLLMGSCD  160 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeecCCEeecccCceeecCCCcc
Confidence            999987 88777643110    0                           11111          11111          


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                              ..|+|||.+ .+..++.++|+||||+++|++++|..||.....
T Consensus       161 ~~~~~~~~~~~~~pe~~-~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~  210 (260)
T cd08222         161 LATTFTGTPYYMSPEAL-KHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF  210 (260)
T ss_pred             cccCCCCCcCccCHHHH-ccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH
Confidence                    238899954 455578899999999999999999999976543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.83  E-value=6.2e-20  Score=147.69  Aligned_cols=143  Identities=24%  Similarity=0.401  Sum_probs=109.3

Q ss_pred             cceeEEEEeeecCceEEEEEEE----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLN----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RY  114 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~  114 (218)
                      .-|++++.||+|+||.||++..    +.++..+|+|.++... .......+.+|+.+++.++|||++++++++...  ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc-cHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence            4578999999999999999974    3567899999986432 233456789999999999999999999998764  67


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      .+++|||+++ +|.+++......                            +++|.+           .++|        
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~  162 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETD  162 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccC
Confidence            9999999986 999988653211                            222211           1111        


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                                   ..|+|||.+. +..++.++|||||||++|++++++.|+.
T Consensus       163 ~~~~~~~~~~~~~~~y~apE~~~-~~~~~~~~Di~slG~il~ellt~~~~~~  213 (284)
T cd05079         163 KEYYTVKDDLDSPVFWYAPECLI-QSKFYIASDVWSFGVTLYELLTYCDSES  213 (284)
T ss_pred             ccceeecCCCCCCccccCHHHhc-cCCCCccccchhhhhhhhhhhcCCCCCc
Confidence                         1389999654 4558899999999999999999877653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.83  E-value=6.8e-22  Score=178.09  Aligned_cols=146  Identities=32%  Similarity=0.560  Sum_probs=119.1

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      ++-...||.|.||.||.|.+..+|...|+|.++...........+.+|+.++..++|||+|++|++-..+...+|.||||
T Consensus      1237 Wqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC 1316 (1509)
T KOG4645|consen 1237 WQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYC 1316 (1509)
T ss_pred             eccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHh
Confidence            34467799999999999999999999999999877766777888999999999999999999999999999999999999


Q ss_pred             CC-ChHHHhhhcccC---------------------------Ccccccc-----------cc------------------
Q 041487          123 DL-DLGSFIRKHTIT---------------------------SIRPHIK-----------EV------------------  145 (218)
Q Consensus       123 ~~-~L~~~~~~~~~~---------------------------~~~~~~~-----------~~------------------  145 (218)
                      .+ +|++...-.+..                           ++++.+.           +|                  
T Consensus      1317 ~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~ 1396 (1509)
T KOG4645|consen 1317 EGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQ 1396 (1509)
T ss_pred             ccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHH
Confidence            87 887765543222                           3444321           22                  


Q ss_pred             ---CCc-ccCcccccCCC--CCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ---GSP-YKAPESRIRSS--VYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ---g~~-y~aPE~~~~~~--~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                         |++ |||||.+.+.+  ..+.+.||||+|||+.||+||+.||...+
T Consensus      1397 ~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~d 1445 (1509)
T KOG4645|consen 1397 SMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELD 1445 (1509)
T ss_pred             hhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhcc
Confidence               332 99999765533  35678999999999999999999998653

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.82  E-value=1.1e-19  Score=157.46  Aligned_cols=147  Identities=22%  Similarity=0.399  Sum_probs=103.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCc-EEEEEE--------------eec-CCCCCCchHHHHHHHHHHhhCCCCCee
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGK-KVAIKM--------------INI-QNEPEGVPSYLIAGVSLLKELEHDNIV  103 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~-~vaiK~--------------~~~-~~~~~~~~~~~~~e~~~l~~l~h~~iv  103 (218)
                      .++|++++.||+|+||.||+|..+.... ..+.|.              +.+ ..........+.+|+.++++++|+||+
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            4689999999999999999987654322 222221              111 112223456788999999999999999


Q ss_pred             eeeeeEEeCCEEEEEEecCCCChHHHhhhccc--------------------------------CCcccc----------
Q 041487          104 RLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTI--------------------------------TSIRPH----------  141 (218)
Q Consensus       104 ~~~~~~~~~~~~~lv~E~~~~~L~~~~~~~~~--------------------------------~~~~~~----------  141 (218)
                      ++++++...+..|+++|++..+|.+++.....                                .+++|.          
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~v  306 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKI  306 (501)
T ss_pred             cEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCE
Confidence            99999999999999999998777776532211                                022221          


Q ss_pred             -cccc------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCC-CCCCC
Q 041487          142 -IKEV------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP-LFPCG  187 (218)
Q Consensus       142 -~~~~------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~-Pf~~~  187 (218)
                       +.+|                  | ..|+|||.+ .+..++.++|||||||++|+|++|.. ||...
T Consensus       307 kL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~  372 (501)
T PHA03210        307 VLGDFGTAMPFEKEREAFDYGWVGTVATNSPEIL-AGDGYCEITDIWSCGLILLDMLSHDFCPIGDG  372 (501)
T ss_pred             EEEeCCCceecCcccccccccccCCcCCCCchhh-cCCCCCcHHHHHHHHHHHHHHHHCCCCCccCC
Confidence             1122                  2 238999955 45558999999999999999999875 55433

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.82  E-value=8.7e-21  Score=164.68  Aligned_cols=160  Identities=26%  Similarity=0.379  Sum_probs=125.3

Q ss_pred             eeEEEEeeecCceEEEEEEEccCC----cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETG----KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~----~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .+-.++||.|+||+||+|..-..+    .+||||++... ......+.+..|+.+|.+++|||++++++++.... +-||
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~-t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlv  775 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF-TSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLV  775 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeecc-CCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHH
Confidence            455789999999999999875544    57999988643 33445678999999999999999999999997665 8899


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------C-----------ccccccccCCc----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------S-----------IRPHIKEVGSP----------  148 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~-----------~~~~~~~~g~~----------  148 (218)
                      ++++++ .|.||++.+...                            +           -..++.++|.+          
T Consensus       776 tq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey  855 (1177)
T KOG1025|consen  776 TQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEY  855 (1177)
T ss_pred             HHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccc
Confidence            999997 999999876543                            0           01112333332          


Q ss_pred             ----------ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcc
Q 041487          149 ----------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       149 ----------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~  205 (218)
                                |+|-| .+....|+.++|||||||++||++| |..|+.+...+.+..+.+.....+.+
T Consensus       856 ~~~~gK~pikwmale-~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqP  922 (1177)
T KOG1025|consen  856 SAPGGKVPIKWMALE-SIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQP  922 (1177)
T ss_pred             cccccccCcHHHHHH-HhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCC
Confidence                      67777 5666779999999999999999999 99999999888888887765554443

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=1.7e-21  Score=161.51  Aligned_cols=164  Identities=23%  Similarity=0.360  Sum_probs=129.9

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ...++...+++.+..||-|+||.|=++..+.....+|+|++++.. .++.+.+++-.|-.+|..+.+|+||++|..|+++
T Consensus       413 e~a~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~  492 (732)
T KOG0614|consen  413 EFAQVKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDS  492 (732)
T ss_pred             hhcccchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccc
Confidence            445567788999999999999999999876666679999998765 5667788999999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc---------------------------CCccccc----------------------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI---------------------------TSIRPHI----------------------  142 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~---------------------------~~~~~~~----------------------  142 (218)
                      .++|++||-|-| .|.-.++..+.                           .+.+|.+                      
T Consensus       493 kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~  572 (732)
T KOG0614|consen  493 KYVYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGS  572 (732)
T ss_pred             hhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhcc
Confidence            999999999843 33333332221                           1333332                      


Q ss_pred             -----cccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          143 -----KEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       143 -----~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                           ..+|++ |.|||.+.+.+ .+.++|.||||+++||+++|.+||++.++......+..
T Consensus       573 g~KTwTFcGTpEYVAPEIILnKG-HD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILk  633 (732)
T KOG0614|consen  573 GRKTWTFCGTPEYVAPEIILNKG-HDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILK  633 (732)
T ss_pred             CCceeeecCCcccccchhhhccC-cchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHh
Confidence                 345655 99999666555 79999999999999999999999999877766665543

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2e-21  Score=159.09  Aligned_cols=153  Identities=27%  Similarity=0.471  Sum_probs=119.9

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-----CCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-----EGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      ..-..+++|-++..||+|+|+.||+|.+....+.||+|+-...-.+     ....++.-+|-.+++.++||-||++|++|
T Consensus       457 DHptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyf  536 (775)
T KOG1151|consen  457 DHPTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYF  536 (775)
T ss_pred             cCcchHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeee
Confidence            3345678899999999999999999999989999999986433222     24467788999999999999999999999


Q ss_pred             E-eCCEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc--------------cc
Q 041487          110 T-TGRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI--------------KE  144 (218)
Q Consensus       110 ~-~~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~--------------~~  144 (218)
                      . +.+.+|-|+|||+| +|.-|++.+...                             +.+|.+              .+
T Consensus       537 slDtdsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITD  616 (775)
T KOG1151|consen  537 SLDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITD  616 (775)
T ss_pred             eeccccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeee
Confidence            6 66789999999999 887777765443                             222211              22


Q ss_pred             cC------------------------Cc-ccCcccccCCCC---CCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 VG------------------------SP-YKAPESRIRSSV---YSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 ~g------------------------~~-y~aPE~~~~~~~---~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      ||                        +. |++||.++-++.   .+.++||||+||++|.++-|+.||..+
T Consensus       617 FGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhn  687 (775)
T KOG1151|consen  617 FGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHN  687 (775)
T ss_pred             cchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCc
Confidence            22                        22 788887766632   678999999999999999999999754

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.82  E-value=1.4e-19  Score=159.66  Aligned_cols=179  Identities=28%  Similarity=0.439  Sum_probs=132.2

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEcc-------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeee
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLE-------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLL  106 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~  106 (218)
                      ..++..++.++.+.+|+|.||.|++|....       ....||||..+..... ...+.+..|+.+++.+ .|+|++.+.
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~-~~~~~~~~El~~m~~~g~H~niv~ll  368 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS-SEKKDLMSELNVLKELGKHPNIVNLL  368 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc-HHHHHHHHHHHHHHHhcCCcchhhhe
Confidence            556667777888899999999999997531       1467999999865544 6678999999999999 699999999


Q ss_pred             eeEEeCCEEEEEEecCCC-ChHHHhhhcc-----------------cC--------------------------------
Q 041487          107 DVLTTGRYVYLVFEYLDL-DLGSFIRKHT-----------------IT--------------------------------  136 (218)
Q Consensus       107 ~~~~~~~~~~lv~E~~~~-~L~~~~~~~~-----------------~~--------------------------------  136 (218)
                      +.+...+.+++++||+.. +|.+|++...                 ..                                
T Consensus       369 G~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRN  448 (609)
T KOG0200|consen  369 GACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARN  448 (609)
T ss_pred             eeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhh
Confidence            999999999999999986 9999998877                 11                                


Q ss_pred             -----CccccccccC-------------------Cc--ccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC-
Q 041487          137 -----SIRPHIKEVG-------------------SP--YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK-  188 (218)
Q Consensus       137 -----~~~~~~~~~g-------------------~~--y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~-  188 (218)
                           .-..++.+||                   .+  |||||.+.. ..|+.++||||||++|||++| |..||++.. 
T Consensus       449 VLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~-~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~  527 (609)
T KOG0200|consen  449 VLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFD-RVFTSKSDVWSFGILLWEIFTLGGTPYPGIPP  527 (609)
T ss_pred             EEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhcc-CcccccchhhHHHHHHHHHhhCCCCCCCCCCc
Confidence                 0000111221                   23  999996655 669999999999999999999 999999853 


Q ss_pred             cchHHHHHHHhcccCcccc-hhhhhhhc
Q 041487          189 KDHLSLIVRYFTALTNYLV-LPCFLSIM  215 (218)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~  215 (218)
                      ...+.+.++....+..+.. .+.+...|
T Consensus       528 ~~~l~~~l~~G~r~~~P~~c~~eiY~iM  555 (609)
T KOG0200|consen  528 TEELLEFLKEGNRMEQPEHCSDEIYDLM  555 (609)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHH
Confidence            3333334444344333332 44444444

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.81  E-value=2e-19  Score=146.69  Aligned_cols=135  Identities=19%  Similarity=0.269  Sum_probs=104.4

Q ss_pred             CceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-ChHHHhh
Q 041487           53 VFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIR  131 (218)
Q Consensus        53 ~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~~~  131 (218)
                      +++.|++++...++..||+|.+..........+.+.+|+.+++.++|+||+++++++......+++|||+++ +|.+++.
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~   91 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLK   91 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHH
Confidence            455667777777999999999986544555678899999999999999999999999999999999999986 7888776


Q ss_pred             hcccC-----------------------------Cccccc-----------ccc-------------------------C
Q 041487          132 KHTIT-----------------------------SIRPHI-----------KEV-------------------------G  146 (218)
Q Consensus       132 ~~~~~-----------------------------~~~~~~-----------~~~-------------------------g  146 (218)
                      .....                             ++++.+           .++                         .
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
T cd08216          92 THFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKN  171 (314)
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeecccccccccccccccccccc
Confidence            43111                             122111           111                         1


Q ss_pred             CcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 SPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      ..|+|||.+... ..++.++|+|||||++|+|++|+.||...
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~  213 (314)
T cd08216         172 LPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDM  213 (314)
T ss_pred             ccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            138999965543 34788999999999999999999999865

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.81  E-value=4.2e-19  Score=140.54  Aligned_cols=139  Identities=22%  Similarity=0.382  Sum_probs=105.6

Q ss_pred             EEeeecCceEEEEEEEccCC----------cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           47 EKIGQGVFGEVYKCLNLETG----------KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~----------~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +.||+|+||.||+|.+..++          ..+++|.+....   .....+.+|+.+++.++|||++++++.+.. ...+
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   76 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH---RDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENI   76 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch---hhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcE
Confidence            36899999999999987665          357778765332   115788899999999999999999999887 7789


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc------------------ccc----
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI------------------KEV----  145 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~------------------~~~----  145 (218)
                      ++|||+++ +|.+++......                            +++|.+                  .++    
T Consensus        77 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~  156 (259)
T cd05037          77 MVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI  156 (259)
T ss_pred             EEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccc
Confidence            99999987 888887654411                            222221                  122    


Q ss_pred             ----------CCcccCcccccCC-CCCCCcchHHHHHHHHHHHHh-CCCCCCCCCc
Q 041487          146 ----------GSPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKK  189 (218)
Q Consensus       146 ----------g~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~  189 (218)
                                ..+|+|||.+... ..++.++||||||+++|++++ |..||...+.
T Consensus       157 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~  212 (259)
T cd05037         157 TVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSS  212 (259)
T ss_pred             ccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCc
Confidence                      2349999965544 368899999999999999999 6888876643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.81  E-value=6.1e-19  Score=142.13  Aligned_cols=146  Identities=19%  Similarity=0.358  Sum_probs=111.6

Q ss_pred             ceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCC--CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      +|++.+.||+|++|.||+++..   .++..+|+|.+++..  ......+.+.+|+.++.++ +|++++++++.+..+...
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            4889999999999999999864   357889999987543  2234456788999999999 699999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Ccccc-----------cccc-----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH-----------IKEV-----------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~-----------~~~~-----------  145 (218)
                      ++||||+.+ +|.+++......                           ++++.           ..++           
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  160 (288)
T cd05583          81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE  160 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccccc
Confidence            999999986 888877543221                           11111           1111           


Q ss_pred             --------CCcccCcccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 --------GSPYKAPESRIRSS-VYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 --------g~~y~aPE~~~~~~-~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ...|+|||.+.... ..+.++||||||+++|+|++|..||...
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  211 (288)
T cd05583         161 ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVD  211 (288)
T ss_pred             cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccC
Confidence                    22489999654432 2678999999999999999999999643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=8.6e-20  Score=154.96  Aligned_cols=152  Identities=29%  Similarity=0.477  Sum_probs=120.6

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      +++.+-|.-++.||-|+||.|.++...++...+|.|.+++.. ..+.+..+...|-.+|...+++.||++|..|++.+.+
T Consensus       625 KMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnL  704 (1034)
T KOG0608|consen  625 KMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNL  704 (1034)
T ss_pred             hccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCce
Confidence            345677999999999999999999988899999999998765 5566778899999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhccc---------------------------CCccccc-------------------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTI---------------------------TSIRPHI-------------------------  142 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~---------------------------~~~~~~~-------------------------  142 (218)
                      |+||+|++| ++-..+-+.+.                           .+++|.+                         
T Consensus       705 YFVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHd  784 (1034)
T KOG0608|consen  705 YFVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHD  784 (1034)
T ss_pred             EEEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceeccc
Confidence            999999964 43322222111                           0333322                         


Q ss_pred             ---------------------------------------------cccCCc-ccCcccccCCCCCCCcchHHHHHHHHHH
Q 041487          143 ---------------------------------------------KEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAE  176 (218)
Q Consensus       143 ---------------------------------------------~~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~  176 (218)
                                                                   ...|++ |+|||++...+ |+..+|.||.||+|||
T Consensus       785 skYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g-~~q~cdwws~gvil~e  863 (1034)
T KOG0608|consen  785 SKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTG-YTQLCDWWSVGVILYE  863 (1034)
T ss_pred             cccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccC-ccccchhhHhhHHHHH
Confidence                                                         112322 99999777666 8999999999999999


Q ss_pred             HHhCCCCCCCCCc
Q 041487          177 MVSGKPLFPCGKK  189 (218)
Q Consensus       177 l~tg~~Pf~~~~~  189 (218)
                      |+.|+.||-...+
T Consensus       864 m~~g~~pf~~~tp  876 (1034)
T KOG0608|consen  864 MLVGQPPFLADTP  876 (1034)
T ss_pred             HhhCCCCccCCCC
Confidence            9999999976633

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.81  E-value=1.2e-18  Score=134.70  Aligned_cols=155  Identities=30%  Similarity=0.533  Sum_probs=120.2

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      |.+.+.||.|++|.||++....++..+++|.+...... ...+.+.+|+.++++++|+|++++++.+......++++|++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE-KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch-HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEecc
Confidence            56789999999999999999888999999998754332 24678899999999999999999999999989999999999


Q ss_pred             CC-ChHHHhhhccc-C---------------------------Ccccc-----------cc-------------------
Q 041487          123 DL-DLGSFIRKHTI-T---------------------------SIRPH-----------IK-------------------  143 (218)
Q Consensus       123 ~~-~L~~~~~~~~~-~---------------------------~~~~~-----------~~-------------------  143 (218)
                      ++ +|.+++..... .                           ++.+.           +.                   
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (225)
T smart00221       80 EGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTV  159 (225)
T ss_pred             CCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccce
Confidence            98 99998866432 1                           11110           01                   


Q ss_pred             ccCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC-C-CcchHHHHHHH
Q 041487          144 EVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC-G-KKDHLSLIVRY  198 (218)
Q Consensus       144 ~~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~-~-~~~~~~~~~~~  198 (218)
                      .....|++||.+.....++.++|+|+||++++++++|+.||+. . +...+...+..
T Consensus       160 ~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~~  216 (225)
T smart00221      160 KGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWSF  216 (225)
T ss_pred             eccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHhc
Confidence            1122388999653455577899999999999999999999987 3 44355555443

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.81  E-value=3.1e-20  Score=138.50  Aligned_cols=157  Identities=24%  Similarity=0.373  Sum_probs=118.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..+...-+..||+|++|.|-+.++..+|...|+|.++.... ....+++.+|+.+..+. ..|++|++|+.......+|+
T Consensus        44 ~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn-~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwI  122 (282)
T KOG0984|consen   44 PADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN-SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWI  122 (282)
T ss_pred             chhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcC-hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEE
Confidence            34445557889999999999999999999999999986544 34456788888865555 89999999999999999999


Q ss_pred             EEecCCCChHHHhhhc---ccC-----------------------------Cccccc-----------cccC--------
Q 041487          118 VFEYLDLDLGSFIRKH---TIT-----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~---~~~-----------------------------~~~~~~-----------~~~g--------  146 (218)
                      .||.|+.+|..|.+.-   +..                             +.+|.+           =+||        
T Consensus       123 cME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS  202 (282)
T KOG0984|consen  123 CMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDS  202 (282)
T ss_pred             eHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhh
Confidence            9999998888776541   110                             344432           1222        


Q ss_pred             ---------CcccCcccccC---CCCCCCcchHHHHHHHHHHHHhCCCCCCCC--CcchHHHHH
Q 041487          147 ---------SPYKAPESRIR---SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG--KKDHLSLIV  196 (218)
Q Consensus       147 ---------~~y~aPE~~~~---~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~--~~~~~~~~~  196 (218)
                               -+|+|||.+..   .+.|+.++||||||+++.||++++.||+.-  ..+.+.+++
T Consensus       203 iAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvV  266 (282)
T KOG0984|consen  203 IAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVV  266 (282)
T ss_pred             hHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHh
Confidence                     34999995432   234899999999999999999999999865  444444443

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.80  E-value=4.1e-20  Score=156.44  Aligned_cols=157  Identities=29%  Similarity=0.482  Sum_probs=122.7

Q ss_pred             ccce-eEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC--CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--CE
Q 041487           40 DWNY-KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--RY  114 (218)
Q Consensus        40 ~~~~-~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~  114 (218)
                      .++| +...+||+|+|-+||+|.+-.+|..||+-.++...  ......++|..|+.+|+.|+||||+++|++|.+.  .+
T Consensus        38 ~gRy~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~  117 (632)
T KOG0584|consen   38 TGRYLKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKT  117 (632)
T ss_pred             CCceeehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCce
Confidence            3445 67889999999999999998899999986665333  3345569999999999999999999999999754  45


Q ss_pred             EEEEEecCCC-ChHHHhhhcccCCccc-----------------------------------------ccc---------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTITSIRP-----------------------------------------HIK---------  143 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~~~~~-----------------------------------------~~~---------  143 (218)
                      +.+|+|.+.. +|..|.+++...+++.                                         ++.         
T Consensus       118 in~iTEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r  197 (632)
T KOG0584|consen  118 INFITELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLR  197 (632)
T ss_pred             eeeeeecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhh
Confidence            9999999976 9999998876542111                                         111         


Q ss_pred             ------ccCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC-CCCcchHHHHHHH
Q 041487          144 ------EVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVRY  198 (218)
Q Consensus       144 ------~~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~-~~~~~~~~~~~~~  198 (218)
                            ..|+| |||||.. + ..|+..+||||||+.+.||+|+.-||+ |.+...+.+.+-.
T Consensus       198 ~s~aksvIGTPEFMAPEmY-E-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~S  258 (632)
T KOG0584|consen  198 KSHAKSVIGTPEFMAPEMY-E-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTS  258 (632)
T ss_pred             ccccceeccCccccChHHH-h-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHc
Confidence                  13554 9999943 3 449999999999999999999999997 4466666665544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.80  E-value=2.3e-20  Score=155.19  Aligned_cols=164  Identities=32%  Similarity=0.517  Sum_probs=129.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC------CCeeeeeeeEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH------DNIVRLLDVLT  110 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h------~~iv~~~~~~~  110 (218)
                      ++....|.+....|+|-||.|..|.+...++.||||+++...   ...+.=++|+++|++|+.      -|+++++..|.
T Consensus       428 E~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE---~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~  504 (752)
T KOG0670|consen  428 ELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE---VMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFK  504 (752)
T ss_pred             hhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch---HHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhh
Confidence            345567899999999999999999999899999999997433   233456689999999852      37999999999


Q ss_pred             eCCEEEEEEecCCCChHHHhhhcccC------------------------------Ccccccc------------ccCCc
Q 041487          111 TGRYVYLVFEYLDLDLGSFIRKHTIT------------------------------SIRPHIK------------EVGSP  148 (218)
Q Consensus       111 ~~~~~~lv~E~~~~~L~~~~~~~~~~------------------------------~~~~~~~------------~~g~~  148 (218)
                      ..+++|+|+|-....|.+.+++.+..                              +|+|.+.            +||++
T Consensus       505 hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA  584 (752)
T KOG0670|consen  505 HKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSA  584 (752)
T ss_pred             hcceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccc
Confidence            99999999999988888877765442                              5566542            24443


Q ss_pred             ----------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCc
Q 041487          149 ----------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTN  204 (218)
Q Consensus       149 ----------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~  204 (218)
                                      |.||| ++-+.+|+...|+||+||+|||++||+..|++. +..++.......|+.|.
T Consensus       585 ~~~~eneitPYLVSRFYRaPE-IiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~  656 (752)
T KOG0670|consen  585 SFASENEITPYLVSRFYRAPE-IILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPN  656 (752)
T ss_pred             cccccccccHHHHHHhccCcc-eeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcH
Confidence                            99999 666777999999999999999999999999999 55555555555555554

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.80  E-value=1.6e-18  Score=138.44  Aligned_cols=140  Identities=23%  Similarity=0.347  Sum_probs=102.2

Q ss_pred             EeeecCceEEEEEEEccC--CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           48 KIGQGVFGEVYKCLNLET--GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      .||+|+||.||++.....  ...+++|.+.... .....+.+.+|+.+++.++|||++++++.+......+++|||+++ 
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANA-SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCC-ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            689999999999975332  2356677765432 223456889999999999999999999999999999999999986 


Q ss_pred             ChHHHhhhcccC-------------------------------Cccccc-----------cccC----------------
Q 041487          125 DLGSFIRKHTIT-------------------------------SIRPHI-----------KEVG----------------  146 (218)
Q Consensus       125 ~L~~~~~~~~~~-------------------------------~~~~~~-----------~~~g----------------  146 (218)
                      +|.+++......                               ++++.+           .++|                
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  160 (268)
T cd05086          81 DLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDD  160 (268)
T ss_pred             cHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccC
Confidence            998887643110                               222211           2222                


Q ss_pred             ----CcccCcccccC------CCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC
Q 041487          147 ----SPYKAPESRIR------SSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK  188 (218)
Q Consensus       147 ----~~y~aPE~~~~------~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~  188 (218)
                          ..|+|||.+..      ...++.++|||||||++|+|++ |..||...+
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~  213 (268)
T cd05086         161 KCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLS  213 (268)
T ss_pred             CcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC
Confidence                24899996542      1235678999999999999997 578987653

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.79  E-value=4.1e-18  Score=138.07  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=101.3

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCc---------hHHHHHHHHHHhhCCCCCe
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGV---------PSYLIAGVSLLKELEHDNI  102 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~---------~~~~~~e~~~l~~l~h~~i  102 (218)
                      ...+...+|++.+.||+|+||.||+|....+   +..+++|...........         ......+...+..++|+++
T Consensus         6 ~~~i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i   85 (294)
T PHA02882          6 LIDITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGI   85 (294)
T ss_pred             eeccCCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCC
Confidence            3446667899999999999999999998776   567787764322111000         0112233344566789999


Q ss_pred             eeeeeeEEeCC----EEEEEEecCCCChHHHhhhccc---------------------------CCcccc----------
Q 041487          103 VRLLDVLTTGR----YVYLVFEYLDLDLGSFIRKHTI---------------------------TSIRPH----------  141 (218)
Q Consensus       103 v~~~~~~~~~~----~~~lv~E~~~~~L~~~~~~~~~---------------------------~~~~~~----------  141 (218)
                      +++++++....    ..++++|++..++.+.+.....                           .+++|.          
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~  165 (294)
T PHA02882         86 PKYYGCGSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRG  165 (294)
T ss_pred             CcEEEeeeEecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcE
Confidence            99998765432    4678888876555444332210                           022221          


Q ss_pred             -cccc------------------------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          142 -IKEV------------------------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       142 -~~~~------------------------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                       +.+|                        |+ .|+||| ...+..++.++|||||||++|+|++|+.||.+.
T Consensus       166 ~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape-~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~  236 (294)
T PHA02882        166 YIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLD-AHNGACVTRRGDLESLGYCMLKWAGIKLPWKGF  236 (294)
T ss_pred             EEEEcCCceeeccCCcccccccccccccCCCccccCHH-HhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCcc
Confidence             1122                        22 377888 555666899999999999999999999999876

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.79  E-value=8.1e-20  Score=149.77  Aligned_cols=150  Identities=27%  Similarity=0.413  Sum_probs=119.7

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..+.|..-.+||+|+||.|+-++.+.+|.-+|.|.+.+.+... .-......|..++.+++.++||.+-..|...+.+
T Consensus       181 pvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~L  260 (591)
T KOG0986|consen  181 PVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDAL  260 (591)
T ss_pred             hccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCce
Confidence            345677999999999999999999999999999999997766443 3345677899999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------------------  142 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------------------  142 (218)
                      ++|+..|+| +|.-.+-..+..                             +.+|.+                       
T Consensus       261 ClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g  340 (591)
T KOG0986|consen  261 CLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEG  340 (591)
T ss_pred             EEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCC
Confidence            999999986 664444333321                             333322                       


Q ss_pred             ----cccCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          143 ----KEVGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       143 ----~~~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                          ...|+ .|||||++.... |+.+.|.|||||++|+|+.|+-||-..
T Consensus       341 ~~~~~rvGT~GYMAPEvl~ne~-Y~~s~Dwf~lGCllYemi~G~sPFr~~  389 (591)
T KOG0986|consen  341 KPIRGRVGTVGYMAPEVLQNEV-YDFSPDWFSLGCLLYEMIAGHSPFRQR  389 (591)
T ss_pred             CccccccCcccccCHHHHcCCc-ccCCccHHHHHhHHHHHHcccCchhhh
Confidence                22333 499999665555 999999999999999999999999765

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=6.9e-21  Score=145.94  Aligned_cols=167  Identities=32%  Similarity=0.628  Sum_probs=132.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--------  110 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--------  110 (218)
                      ..++|.-...||+|.||.||+|+.+.+++.||+|..--+...........+|+.++..++|+|++.++++|.        
T Consensus        15 ~~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r   94 (376)
T KOG0669|consen   15 EVSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNR   94 (376)
T ss_pred             cchHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence            345677778999999999999999999999999876544445566677899999999999999999999875        


Q ss_pred             eCCEEEEEEecCCCChHHHhhhcccC----------------------------Cccc-----------ccccc------
Q 041487          111 TGRYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRP-----------HIKEV------  145 (218)
Q Consensus       111 ~~~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~-----------~~~~~------  145 (218)
                      ....+|+|+.+|+.+|...+......                            ++++           +.++|      
T Consensus        95 ~r~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~f  174 (376)
T KOG0669|consen   95 DRATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAF  174 (376)
T ss_pred             ccceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccce
Confidence            34569999999987776655432111                            1211           11223      


Q ss_pred             ----------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCcc
Q 041487          146 ----------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       146 ----------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~  205 (218)
                                      +..|.+||.+.+.+.|+++.|||+-||++.||.||.+-+.++ +...++.+.+.+|.+.+.
T Consensus       175 s~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tke  251 (376)
T KOG0669|consen  175 STSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKE  251 (376)
T ss_pred             ecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcc
Confidence                            334999998898999999999999999999999999999998 777888888888887664

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.78  E-value=2.7e-19  Score=150.40  Aligned_cols=149  Identities=28%  Similarity=0.444  Sum_probs=118.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC------CCCchHHHHHHHHHHhhCC---CCCeeeeeee
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE------PEGVPSYLIAGVSLLKELE---HDNIVRLLDV  108 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~  108 (218)
                      -...+|..++.+|+|+||.|++|.++...-.|+||.+.+++.      .....-..-.|+.+|.+++   |+||++++++
T Consensus       558 ~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf  637 (772)
T KOG1152|consen  558 KKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF  637 (772)
T ss_pred             cccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe
Confidence            345679999999999999999999999999999999987641      1222334667999999997   9999999999


Q ss_pred             EEeCCEEEEEEecCCC--ChHHHhhhcccC---------------------------Ccccc-----------ccccCC-
Q 041487          109 LTTGRYVYLVFEYLDL--DLGSFIRKHTIT---------------------------SIRPH-----------IKEVGS-  147 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~--~L~~~~~~~~~~---------------------------~~~~~-----------~~~~g~-  147 (218)
                      |.++++.|++||--..  +|-+||..++..                           +++..           ..+||+ 
T Consensus       638 FEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsa  717 (772)
T KOG1152|consen  638 FEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSA  717 (772)
T ss_pred             eecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccch
Confidence            9999999999997643  778888765543                           22221           123333 


Q ss_pred             ---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          148 ---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       148 ---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                     .|.|||++-+.++.+...|||++|++||-+.-..-||..
T Consensus       718 a~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  718 AYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             hhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence                           399999766667777889999999999999999999864

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.77  E-value=4.5e-19  Score=145.90  Aligned_cols=145  Identities=23%  Similarity=0.324  Sum_probs=108.2

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhh--CCCCCeeeeeeeEE
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE--LEHDNIVRLLDVLT  110 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~  110 (218)
                      ...+.......++.+.||+|.||.||+|+.  +++.||||+++..     ..+.+..|..+...  ++|+||+++++.-.
T Consensus       202 ~sspl~~l~pl~l~eli~~Grfg~V~KaqL--~~~~VAVKifp~~-----~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ek  274 (534)
T KOG3653|consen  202 PSSPLLELDPLQLLELIGRGRFGCVWKAQL--DNRLVAVKIFPEQ-----EKQSFQNEKNIYSLPGMKHENILQFIGAEK  274 (534)
T ss_pred             CCcccccCCchhhHHHhhcCccceeehhhc--cCceeEEEecCHH-----HHHHHHhHHHHHhccCccchhHHHhhchhc
Confidence            334455677889999999999999999987  7799999998632     34567777777655  48999999999876


Q ss_pred             eCC----EEEEEEecCCC-ChHHHhhhcccC----------------------------------------------Ccc
Q 041487          111 TGR----YVYLVFEYLDL-DLGSFIRKHTIT----------------------------------------------SIR  139 (218)
Q Consensus       111 ~~~----~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------------------~~~  139 (218)
                      ...    .+++|+||-+. +|.+|++.+...                                              +..
T Consensus       275 r~t~~~~eywLVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlT  354 (534)
T KOG3653|consen  275 RGTADRMEYWLVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLT  354 (534)
T ss_pred             cCCccccceeEEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCc
Confidence            554    89999999876 999999887664                                              111


Q ss_pred             ccccccCC--------------------cccCcccccCCCCCC-----CcchHHHHHHHHHHHHhCCCCC
Q 041487          140 PHIKEVGS--------------------PYKAPESRIRSSVYS-----TPHDVWAVGCIFAEMVSGKPLF  184 (218)
Q Consensus       140 ~~~~~~g~--------------------~y~aPE~~~~~~~~~-----~~~DiwSlG~~l~~l~tg~~Pf  184 (218)
                      ..+.+||.                    .|||||++...-.+.     .+.||||+|.+|||++++..-+
T Consensus       355 ccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~  424 (534)
T KOG3653|consen  355 CCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDA  424 (534)
T ss_pred             EEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            12233433                    399999654322222     3699999999999999976433

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.77  E-value=2.6e-19  Score=140.20  Aligned_cols=142  Identities=26%  Similarity=0.451  Sum_probs=111.4

Q ss_pred             hhccceeE-EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE----e
Q 041487           38 VKDWNYKV-VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT----T  111 (218)
Q Consensus        38 ~~~~~~~~-~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~----~  111 (218)
                      -..++|.+ .++||-|-.|.|..|.++.+++.+|+|++..       .....+|++.+-.. .|||||.++++|.    .
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-------s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~  130 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-------SPKARREVELHWMASGHPHIVSIIDVYENSYQG  130 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-------CHHHHhHhhhhhhhcCCCceEEeehhhhhhccC
Confidence            35667776 5779999999999999999999999998752       24567899887776 7999999999985    4


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc--------------cccCC
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI--------------KEVGS  147 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~--------------~~~g~  147 (218)
                      ..++.+|||+++| .|...+..++..                             +.+|.+              .+||.
T Consensus       131 rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGF  210 (400)
T KOG0604|consen  131 RKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGF  210 (400)
T ss_pred             ceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEeccccc
Confidence            5789999999987 777777765542                             233322              22222


Q ss_pred             ----------------c-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 ----------------P-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 ----------------~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                      + |.||| +.+...|+...|+||+||++|-|++|.+||.++
T Consensus       211 AK~t~~~~~L~TPc~TPyYvaPe-vlg~eKydkscdmwSlgVimYIlLCGyPPFYS~  266 (400)
T KOG0604|consen  211 AKETQEPGDLMTPCFTPYYVAPE-VLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  266 (400)
T ss_pred             ccccCCCccccCCcccccccCHH-HhCchhcCCCCCccchhHHHHHhhcCCCccccc
Confidence                            2 67777 555555999999999999999999999999987

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.77  E-value=4e-18  Score=133.84  Aligned_cols=128  Identities=23%  Similarity=0.305  Sum_probs=97.8

Q ss_pred             cCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-ChHHHh
Q 041487           52 GVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFI  130 (218)
Q Consensus        52 G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~~  130 (218)
                      |.+|.||++.++.+++.+|+|.++...       ...+|...+....|||++++++++......+++|||+++ +|.+++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l   76 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHI   76 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHH
Confidence            889999999999999999999987532       123344455566799999999999999999999999987 898887


Q ss_pred             hhcccC---------------------------Cccccc-----------cccC---------------CcccCcccccC
Q 041487          131 RKHTIT---------------------------SIRPHI-----------KEVG---------------SPYKAPESRIR  157 (218)
Q Consensus       131 ~~~~~~---------------------------~~~~~~-----------~~~g---------------~~y~aPE~~~~  157 (218)
                      ......                           +++|.+           .++|               ..|+|||.. .
T Consensus        77 ~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~-~  155 (237)
T cd05576          77 SKFLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVG-G  155 (237)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCccc-C
Confidence            654221                           222221           1222               239999954 4


Q ss_pred             CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          158 SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       158 ~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      ...++.++|+||+|+++|++++|+.|+...
T Consensus       156 ~~~~~~~~DvwslG~il~el~~g~~~~~~~  185 (237)
T cd05576         156 ISEETEACDWWSLGAILFELLTGKTLVECH  185 (237)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCcchhhcC
Confidence            555789999999999999999999988654

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.5e-18  Score=147.39  Aligned_cols=168  Identities=26%  Similarity=0.372  Sum_probs=120.5

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .+.|.+...+|.|+|+.|-.+.+..+++..++|++.+...      ...+|+.++... +|||++++++.+.++...|+|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~------~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v  394 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD------DNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLV  394 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccccc------ccccccchhhhhcCCCcceeecceecCCceeeee
Confidence            5678888899999999999999999999999999975521      123566555555 899999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC--------------------------Ccccccccc--------------------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT--------------------------SIRPHIKEV--------------------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~~~~--------------------------  145 (218)
                      ||.+.+ -+.+.+......                          |.+|.+..+                          
T Consensus       395 ~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~  474 (612)
T KOG0603|consen  395 MELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPA  474 (612)
T ss_pred             ehhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchhhcccc
Confidence            999987 333433332211                          333333222                          


Q ss_pred             -CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc----ccchhhhhhhcc
Q 041487          146 -GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN----YLVLPCFLSIML  216 (218)
Q Consensus       146 -g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l  216 (218)
                       +..|.|||.+. ...|+.++||||||++||+|++|+.||.....+  ..+....+.++.    +...-+.++.||
T Consensus       475 ~t~~y~APEvl~-~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~--~ei~~~i~~~~~s~~vS~~AKdLl~~LL  547 (612)
T KOG0603|consen  475 LTLQYVAPEVLA-IQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG--IEIHTRIQMPKFSECVSDEAKDLLQQLL  547 (612)
T ss_pred             hhhcccChhhhc-cCCCCcchhhHHHHHHHHHHHhCCCccccCCch--HHHHHhhcCCccccccCHHHHHHHHHhc
Confidence             22399999665 555999999999999999999999999988555  222333333322    333444555555

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.3e-18  Score=134.90  Aligned_cols=159  Identities=28%  Similarity=0.497  Sum_probs=121.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC------CCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP------EGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG  112 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~------~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~  112 (218)
                      ..+|.-.+.+|+|..+.|.++.++.++.++|+|++......      .+..+.-.+|+.+|+++ .||+|+.+.++|+..
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            45677888999999999999999999999999999754321      13345566789999998 899999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc---------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE---------  144 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~---------  144 (218)
                      ..+++|.|.|+. -|-||+.+....                           +.+|.+           ++         
T Consensus        96 sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~  175 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEP  175 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeeccCC
Confidence            999999999986 888888764332                           333322           22         


Q ss_pred             -------cCCc-ccCccccc----C-CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          145 -------VGSP-YKAPESRI----R-SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       145 -------~g~~-y~aPE~~~----~-~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             +|++ |+|||.+-    + ...|+..+|+|++|+++|-++.|++||--.....+.+.+..
T Consensus       176 GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~Ime  242 (411)
T KOG0599|consen  176 GEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIME  242 (411)
T ss_pred             chhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh
Confidence                   3443 99999541    1 23378889999999999999999999986644444444443

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=6.6e-18  Score=138.22  Aligned_cols=92  Identities=24%  Similarity=0.417  Sum_probs=74.0

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhh--CCCCCeeeeeeeEEeC---
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE--LEHDNIVRLLDVLTTG---  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~---  112 (218)
                      ......++.+.||+|.||.||+|..  .|+.||||+|..     .+.+...+|.++.+.  ++|+||+.+++.-..+   
T Consensus       208 TiarqI~L~e~IGkGRyGEVwrG~w--rGe~VAVKiF~s-----rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs  280 (513)
T KOG2052|consen  208 TIARQIVLQEIIGKGRFGEVWRGRW--RGEDVAVKIFSS-----RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGS  280 (513)
T ss_pred             hhhheeEEEEEecCccccceeeccc--cCCceEEEEecc-----cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCc
Confidence            4566789999999999999999988  799999999852     223556677777666  4999999999886533   


Q ss_pred             -CEEEEEEecCCC-ChHHHhhhcccC
Q 041487          113 -RYVYLVFEYLDL-DLGSFIRKHTIT  136 (218)
Q Consensus       113 -~~~~lv~E~~~~-~L~~~~~~~~~~  136 (218)
                       ..+|+|++|=+. +|.||+......
T Consensus       281 ~TQLwLvTdYHe~GSL~DyL~r~tv~  306 (513)
T KOG2052|consen  281 WTQLWLVTDYHEHGSLYDYLNRNTVT  306 (513)
T ss_pred             eEEEEEeeecccCCcHHHHHhhccCC
Confidence             269999999876 999999885543

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.74  E-value=6.3e-19  Score=133.51  Aligned_cols=158  Identities=27%  Similarity=0.568  Sum_probs=122.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEe--CCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTT--GRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~--~~~~  115 (218)
                      ..++|++.+.+|+|.++.||.|....+++.++||++++.     ..+.+.+|+.+|+.+. ||||++++++..+  ...+
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV-----kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktp  110 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV-----KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTP  110 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH-----HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCc
Confidence            457799999999999999999998889999999998642     2366999999999995 9999999999864  4568


Q ss_pred             EEEEecCCC-ChH----------------------HHhhhccc--CCccccc------------cccCCc----------
Q 041487          116 YLVFEYLDL-DLG----------------------SFIRKHTI--TSIRPHI------------KEVGSP----------  148 (218)
Q Consensus       116 ~lv~E~~~~-~L~----------------------~~~~~~~~--~~~~~~~------------~~~g~~----------  148 (218)
                      .++.||++. +..                      ||..+.+.  .+.+|++            .++|.+          
T Consensus       111 aLiFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYn  190 (338)
T KOG0668|consen  111 SLIFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYN  190 (338)
T ss_pred             hhHhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCceee
Confidence            999999862 221                      11122221  1444443            223332          


Q ss_pred             -------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC--CcchHHHHHHHhcc
Q 041487          149 -------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG--KKDHLSLIVRYFTA  201 (218)
Q Consensus       149 -------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~--~~~~~~~~~~~~~~  201 (218)
                             |-.||.+.....|+.+-|+|||||++..|+..+.||-..  +.+.+.++.+.+|.
T Consensus       191 VRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt  252 (338)
T KOG0668|consen  191 VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGT  252 (338)
T ss_pred             eeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhCh
Confidence                   778998999999999999999999999999999888644  77888887776654

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.72  E-value=1.5e-16  Score=123.96  Aligned_cols=141  Identities=36%  Similarity=0.581  Sum_probs=107.9

Q ss_pred             CceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-ChHHHhh
Q 041487           53 VFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIR  131 (218)
Q Consensus        53 ~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~~~  131 (218)
                      +||.||+|+...++..+++|.+........ .+.+.+|+..+++++|++++++++.+......++++|++++ +|..++.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK-RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH-HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            589999999988899999999875432221 67899999999999999999999999999999999999998 9988876


Q ss_pred             hcccC---------------------------Cccccc-----------ccc-----------------CCcccCccccc
Q 041487          132 KHTIT---------------------------SIRPHI-----------KEV-----------------GSPYKAPESRI  156 (218)
Q Consensus       132 ~~~~~---------------------------~~~~~~-----------~~~-----------------g~~y~aPE~~~  156 (218)
                      .....                           ++.+.+           .++                 ...|++||.+.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~  159 (244)
T smart00220       80 KRGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLL  159 (244)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHc
Confidence            54311                           111111           111                 12389999554


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHhCCCCCCC-CCcchHHHH
Q 041487          157 RSSVYSTPHDVWAVGCIFAEMVSGKPLFPC-GKKDHLSLI  195 (218)
Q Consensus       157 ~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~-~~~~~~~~~  195 (218)
                       ...++.++||||||++++++++|..||.. .+...+...
T Consensus       160 -~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~  198 (244)
T smart00220      160 -GKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKK  198 (244)
T ss_pred             -cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHH
Confidence             45578899999999999999999999987 344444433

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=5.3e-18  Score=152.56  Aligned_cols=71  Identities=31%  Similarity=0.455  Sum_probs=63.9

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      ...+|..+..||+|+||.|++++.+-+|+.||||.++... .......+.+|+.++.+++|||+|+++..|.
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~-s~~~~skI~rEVk~LArLnHpNVVRYysAWV  547 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA-SDKLYSKILREVKLLARLNHPNVVRYYSAWV  547 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch-HHHHHHHHHHHHHHHhhcCCcceeeeehhhh
Confidence            4567899999999999999999999999999999998665 6677889999999999999999999998664

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=9.9e-19  Score=135.66  Aligned_cols=160  Identities=29%  Similarity=0.525  Sum_probs=124.2

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-----EEEEEEe
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-----YVYLVFE  120 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~E  120 (218)
                      -+-||-|+||.||.+++..+|+.|++|.++.-...-...+++-+|+.++...+|.|++...++.+...     ++|+++|
T Consensus        58 DRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TE  137 (449)
T KOG0664|consen   58 DRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTE  137 (449)
T ss_pred             CCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHH
Confidence            36799999999999999999999999988643333334578889999999999999999998876443     4788888


Q ss_pred             cCCCChHHHhhhccc---------------------------CCccccc-----------cccCCc--------------
Q 041487          121 YLDLDLGSFIRKHTI---------------------------TSIRPHI-----------KEVGSP--------------  148 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~---------------------------~~~~~~~-----------~~~g~~--------------  148 (218)
                      .+..+|...+-+...                           .+++|.+           -+||.+              
T Consensus       138 LmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqE  217 (449)
T KOG0664|consen  138 LMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHE  217 (449)
T ss_pred             HHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhhhhhhHHH
Confidence            876554443322111                           1555543           234443              


Q ss_pred             -----ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCcc
Q 041487          149 -----YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       149 -----y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~~  205 (218)
                           |.|||.+.+...|+.+.||||+||++.|++-.+..|.-. ..+.+..+...+|.|+..
T Consensus       218 VVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~E  280 (449)
T KOG0664|consen  218 VVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQE  280 (449)
T ss_pred             HHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHH
Confidence                 999999888888999999999999999999999999866 667888888888887653

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.68  E-value=6.2e-17  Score=131.04  Aligned_cols=176  Identities=19%  Similarity=0.288  Sum_probs=135.5

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccC-----CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLET-----GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      -.+..++++....+-+|.||.||.|..++.     .+.|-+|.++. ..++-+...+.+|...+..+.|||+..+.+++.
T Consensus       279 l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~-~AS~iQv~~~L~es~lly~~sH~nll~V~~V~i  357 (563)
T KOG1024|consen  279 LTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQ-HASQIQVNLLLQESMLLYGASHPNLLSVLGVSI  357 (563)
T ss_pred             hhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHh-cccHHHHHHHHHHHHHHhcCcCCCccceeEEEe
Confidence            345667788899999999999999976643     24567777753 345566788999999999999999999999875


Q ss_pred             -eCCEEEEEEecCCC-ChHHHhhhcccCC-----------------------------------ccc-----------cc
Q 041487          111 -TGRYVYLVFEYLDL-DLGSFIRKHTITS-----------------------------------IRP-----------HI  142 (218)
Q Consensus       111 -~~~~~~lv~E~~~~-~L~~~~~~~~~~~-----------------------------------~~~-----------~~  142 (218)
                       +...++++.++.+. .|..|+..+...+                                   +..           +.
T Consensus       358 e~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkl  437 (563)
T KOG1024|consen  358 EDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKL  437 (563)
T ss_pred             eccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEe
Confidence             55678899999886 8888887443210                                   000           00


Q ss_pred             cc--------------cC------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcc
Q 041487          143 KE--------------VG------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTA  201 (218)
Q Consensus       143 ~~--------------~g------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~  201 (218)
                      .+              .|      ..||+||.+. ...|+.++|+||||+++|||+| |+.||-..++..+.-.++....
T Consensus       438 tDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~-n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyR  516 (563)
T KOG1024|consen  438 TDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQ-NSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYR  516 (563)
T ss_pred             ccchhccccCcccccccCCCCCCcccccCHHHHh-hhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccce
Confidence            00              01      1299999654 5559999999999999999999 9999999999999999998888


Q ss_pred             cCcccchhhhhh
Q 041487          202 LTNYLVLPCFLS  213 (218)
Q Consensus       202 ~~~~~~~~~~~~  213 (218)
                      ..++...|+.|=
T Consensus       517 laQP~NCPDeLf  528 (563)
T KOG1024|consen  517 LAQPFNCPDELF  528 (563)
T ss_pred             ecCCCCCcHHHH
Confidence            888888887653

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.67  E-value=8.8e-18  Score=130.11  Aligned_cols=159  Identities=19%  Similarity=0.306  Sum_probs=116.2

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeee-EEeCCEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDV-LTTGRYVYL  117 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~-~~~~~~~~l  117 (218)
                      .+.|.+.+.+|+|.||.+.+|.++.++..+++|.++...   .....|.+|..---.+ -|.||+..|++ |+..+..++
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~---tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF   99 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ---TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVF   99 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch---hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEE
Confidence            466999999999999999999999999999999987543   3357788988776666 58999998886 788889999


Q ss_pred             EEecCCC-ChHHHhhhcccC--------------------------Ccccc-------------ccccCC----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT--------------------------SIRPH-------------IKEVGS----------  147 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~--------------------------~~~~~-------------~~~~g~----------  147 (218)
                      +|||++. +|..-+...+..                          +++..             .-+||.          
T Consensus       100 ~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~  179 (378)
T KOG1345|consen  100 VQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKY  179 (378)
T ss_pred             eeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCceehh
Confidence            9999975 665444333222                          22221             122332          


Q ss_pred             -----cccCcccccCC----CCCCCcchHHHHHHHHHHHHhCCCCCCCC--CcchHHHHHHHhcc
Q 041487          148 -----PYKAPESRIRS----SVYSTPHDVWAVGCIFAEMVSGKPLFPCG--KKDHLSLIVRYFTA  201 (218)
Q Consensus       148 -----~y~aPE~~~~~----~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~--~~~~~~~~~~~~~~  201 (218)
                           +|-+||++...    -...+.+|+|.||+++|.++||++||...  .........+..+.
T Consensus       180 ~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~r  244 (378)
T KOG1345|consen  180 LEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKR  244 (378)
T ss_pred             hhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcc
Confidence                 38999964332    22667899999999999999999999854  44444444554443

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.64  E-value=1.4e-16  Score=125.81  Aligned_cols=164  Identities=29%  Similarity=0.471  Sum_probs=128.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-----
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-----  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----  113 (218)
                      ...+|.-+..+|.|.- .|..+.+.-.+++||+|........+.-.++..+|..++..++|+|+++++.+|..+.     
T Consensus        15 v~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~   93 (369)
T KOG0665|consen   15 VPKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEF   93 (369)
T ss_pred             eeeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHH
Confidence            4566788888999988 7778888888999999987655544555678899999999999999999999997654     


Q ss_pred             -EEEEEEecCCCChHHHhhhccc-------------------------CCccccc-----------cccCCc--------
Q 041487          114 -YVYLVFEYLDLDLGSFIRKHTI-------------------------TSIRPHI-----------KEVGSP--------  148 (218)
Q Consensus       114 -~~~lv~E~~~~~L~~~~~~~~~-------------------------~~~~~~~-----------~~~g~~--------  148 (218)
                       .+|+|||+++.+|.+.+.-...                         .+.+|++           -++|.+        
T Consensus        94 ~e~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~  173 (369)
T KOG0665|consen   94 QEVYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFM  173 (369)
T ss_pred             HhHHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCcccc
Confidence             4899999999887776652100                         0344433           222221        


Q ss_pred             ---------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccCc
Q 041487          149 ---------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALTN  204 (218)
Q Consensus       149 ---------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~~  204 (218)
                               |.|||.+.+-+ +...+||||+||++.||++|+..|++. ..+...++++.+|.|-+
T Consensus       174 mtpyVvtRyyrapevil~~~-~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~  238 (369)
T KOG0665|consen  174 MTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDP  238 (369)
T ss_pred             cCchhheeeccCchheeccC-CcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCH
Confidence                     89999877766 899999999999999999999999987 66777788887777654

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.62  E-value=7.2e-17  Score=140.64  Aligned_cols=134  Identities=24%  Similarity=0.468  Sum_probs=105.6

Q ss_pred             EEEeeecCceE-EEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           46 VEKIGQGVFGE-VYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        46 ~~~ig~G~~g~-v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      -+.+|.|+.|+ ||+|..  .++.||||.+-.     +......+|+..|+.- +||||||+|+.-.++...||..|.|.
T Consensus       514 ~eilG~Gs~Gt~Vf~G~y--e~R~VAVKrll~-----e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~  586 (903)
T KOG1027|consen  514 KEILGYGSNGTVVFRGVY--EGREVAVKRLLE-----EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA  586 (903)
T ss_pred             HHHcccCCCCcEEEEEee--CCceehHHHHhh-----HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh
Confidence            45688888774 788987  888999997642     3346688999999998 79999999999999999999999999


Q ss_pred             CChHHHhhhcccC-------------------------------Cccccc----------------cccC----------
Q 041487          124 LDLGSFIRKHTIT-------------------------------SIRPHI----------------KEVG----------  146 (218)
Q Consensus       124 ~~L~~~~~~~~~~-------------------------------~~~~~~----------------~~~g----------  146 (218)
                      .+|.|++......                               +.+|++                +++|          
T Consensus       587 ~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~s  666 (903)
T KOG1027|consen  587 CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKS  666 (903)
T ss_pred             hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcc
Confidence            9999998774111                               233322                2332          


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhC-CCCCCCC
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG-KPLFPCG  187 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg-~~Pf~~~  187 (218)
                                 ..|.|||.+.... ...++||+|+||++|+.++| ..||...
T Consensus       667 S~~r~s~~sGt~GW~APE~L~~~~-~~~avDiFslGCvfyYvltgG~HpFGd~  718 (903)
T KOG1027|consen  667 SFSRLSGGSGTSGWQAPEQLREDR-KTQAVDIFSLGCVFYYVLTGGSHPFGDS  718 (903)
T ss_pred             hhhcccCCCCcccccCHHHHhccc-cCcccchhhcCceEEEEecCCccCCCch
Confidence                       2399999766555 57799999999999999995 8999654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.60  E-value=9.2e-17  Score=137.18  Aligned_cols=144  Identities=24%  Similarity=0.461  Sum_probs=112.2

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|..+..+|.|.+|.||+++++.++.+.|+|+++..  ..++.+-+.+|+.+++.++||||+.+++.+...+.+|+.|
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLe--p~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLE--PGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeecc--CCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            46799999999999999999999999999999999743  4455677889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccc-----------cc-----------------c
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRP-----------HI-----------------K  143 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~-----------~~-----------------~  143 (218)
                      |||++ +|.+...--+..                           +++-           +.                 +
T Consensus        92 EycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~Krks  171 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKS  171 (829)
T ss_pred             EecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhhhhhhhhc
Confidence            99976 665433211110                           1111           01                 2


Q ss_pred             ccCCc-ccCcccc--cCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          144 EVGSP-YKAPESR--IRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       144 ~~g~~-y~aPE~~--~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                      ..|++ |||||+.  ...+.|...+|||++|++..|+..-++|..
T Consensus       172 fiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf  216 (829)
T KOG0576|consen  172 FIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF  216 (829)
T ss_pred             ccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc
Confidence            23444 7999963  334558999999999999999988777654

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.59  E-value=9e-16  Score=124.92  Aligned_cols=159  Identities=30%  Similarity=0.520  Sum_probs=120.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEcc---CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLE---TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      ...|...+.||+|.|+.||++++..   .+..||+|.+...    ....++..|+++|..+ .+.||+.+.+.++.++..
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t----s~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v  110 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT----SSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQV  110 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc----cCchHHHHHHHHHHHhccchhhhcchhhhccCCee
Confidence            5668999999999999999999876   6788999988633    3456799999999999 799999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC------------------------Ccccc-----------------------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT------------------------SIRPH-----------------------------  141 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~------------------------~~~~~-----------------------------  141 (218)
                      .+|+||.+. ...++.......                        |++|.                             
T Consensus       111 ~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~  190 (418)
T KOG1167|consen  111 AIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTE  190 (418)
T ss_pred             EEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhhh
Confidence            999999842 111111110000                        00000                             


Q ss_pred             --------------------------------------------ccccCC-cccCcccccCCCCCCCcchHHHHHHHHHH
Q 041487          142 --------------------------------------------IKEVGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAE  176 (218)
Q Consensus       142 --------------------------------------------~~~~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~  176 (218)
                                                                  -...|+ .|.|||++.....-++++||||.|+++..
T Consensus       191 ~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Ls  270 (418)
T KOG1167|consen  191 HSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLS  270 (418)
T ss_pred             hhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeeh
Confidence                                                        012233 38999999888878999999999999999


Q ss_pred             HHhCCCCCCCC--CcchHHHHHHHhccc
Q 041487          177 MVSGKPLFPCG--KKDHLSLIVRYFTAL  202 (218)
Q Consensus       177 l~tg~~Pf~~~--~~~~~~~~~~~~~~~  202 (218)
                      +++++.||-..  +.+.+..+.-.+|.-
T Consensus       271 lls~~~PFf~a~dd~~al~ei~tifG~~  298 (418)
T KOG1167|consen  271 LLSRRYPFFKAKDDADALAEIATIFGSA  298 (418)
T ss_pred             hhccccccccCccccchHHHHHHHhChH
Confidence            99999999765  666677766655543

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.58  E-value=2.2e-14  Score=123.59  Aligned_cols=94  Identities=20%  Similarity=0.400  Sum_probs=64.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc----------------cCCcEEEEEEeecCCCC------------CCchHHHHH
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL----------------ETGKKVAIKMINIQNEP------------EGVPSYLIA   89 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~----------------~~~~~vaiK~~~~~~~~------------~~~~~~~~~   89 (218)
                      +..++|.+.++||+|+||.||+|...                ..++.||||.+......            ....+....
T Consensus       142 ~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        142 WSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             ccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHH
Confidence            56889999999999999999999642                23567999998642211            011223445


Q ss_pred             HHHHHhhCCCCCe-----eeeeeeEE--------eCCEEEEEEecCCC-ChHHHhh
Q 041487           90 GVSLLKELEHDNI-----VRLLDVLT--------TGRYVYLVFEYLDL-DLGSFIR  131 (218)
Q Consensus        90 e~~~l~~l~h~~i-----v~~~~~~~--------~~~~~~lv~E~~~~-~L~~~~~  131 (218)
                      |+.++.++.|.++     ++++++|.        ..+..++|+||++. +|.+++.
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~  277 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALD  277 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHh
Confidence            6666777765543     56666654        23568999999987 8877765

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.54  E-value=4.6e-14  Score=123.79  Aligned_cols=90  Identities=17%  Similarity=0.249  Sum_probs=58.6

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccC----CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeee---
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLET----GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDV---  108 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~----~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~---  108 (218)
                      ..+..++|.+.+.||+|+||.||+|.+..+    +..||+|.+....    ..+....+  .++...+.++..+...   
T Consensus       127 ~~~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~----~~e~~~~e--~l~~~~~~~~~~~~~~~~~  200 (566)
T PLN03225        127 PSFKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYG----AVEIWMNE--RVRRACPNSCADFVYGFLE  200 (566)
T ss_pred             CCCccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccc----hhHHHHHH--HHHhhchhhHHHHHHhhhc
Confidence            345678999999999999999999999888    8999999875321    11111111  1222222222222211   


Q ss_pred             ---EEeCCEEEEEEecCCC-ChHHHhh
Q 041487          109 ---LTTGRYVYLVFEYLDL-DLGSFIR  131 (218)
Q Consensus       109 ---~~~~~~~~lv~E~~~~-~L~~~~~  131 (218)
                         .......++|+||+++ +|.+++.
T Consensus       201 ~~~~~~~~~~~LV~ey~~~gsL~~~l~  227 (566)
T PLN03225        201 PVSSKKEDEYWLVWRYEGESTLADLMQ  227 (566)
T ss_pred             ccccccCCceEEEEEecCCCcHHHHHH
Confidence               2356679999999987 7777664

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.52  E-value=6.8e-13  Score=100.65  Aligned_cols=128  Identities=34%  Similarity=0.642  Sum_probs=99.6

Q ss_pred             eeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-ChH
Q 041487           49 IGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLG  127 (218)
Q Consensus        49 ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L~  127 (218)
                      ||+|.+|.||++....++..+++|.+....... ..+.+.+|+.+++.+.|++++++++++......++++|++++ +|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh-HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            689999999999997779999999987543221 357899999999999999999999999998999999999994 999


Q ss_pred             HHhhhc--ccC--------------------------Cccccc------------cc------------------cCCcc
Q 041487          128 SFIRKH--TIT--------------------------SIRPHI------------KE------------------VGSPY  149 (218)
Q Consensus       128 ~~~~~~--~~~--------------------------~~~~~~------------~~------------------~g~~y  149 (218)
                      +++...  ...                          ++.+.+            .+                  ....|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~  159 (215)
T cd00180          80 DLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAY  159 (215)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCc
Confidence            988764  111                          111111            11                  11238


Q ss_pred             cCcccccCCCCCCCcchHHHHHHHHHHH
Q 041487          150 KAPESRIRSSVYSTPHDVWAVGCIFAEM  177 (218)
Q Consensus       150 ~aPE~~~~~~~~~~~~DiwSlG~~l~~l  177 (218)
                      ++||.......++.+.|+|++|++++++
T Consensus       160 ~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         160 MAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             cChhHhcccCCCCchhhhHHHHHHHHHH
Confidence            8899654443688999999999999998

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.50  E-value=1.9e-13  Score=122.40  Aligned_cols=94  Identities=27%  Similarity=0.323  Sum_probs=81.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .++|++++.||+|+||.||+|.+..+++.||+|+++.... .......+.+|+.++..++|+||+++++.+.....+|+|
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            4789999999999999999999988999999999975432 233456788999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhc
Q 041487          119 FEYLDL-DLGSFIRKH  133 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~  133 (218)
                      |||+.+ +|.+++...
T Consensus        83 mEy~~g~~L~~li~~~   98 (669)
T cd05610          83 MEYLIGGDVKSLLHIY   98 (669)
T ss_pred             EeCCCCCCHHHHHHhc
Confidence            999976 888887643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.43  E-value=3.1e-14  Score=110.85  Aligned_cols=160  Identities=13%  Similarity=0.261  Sum_probs=119.0

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...+......++.+|.+...|..|+|+.  .|-.++.|++.......+..+.|..|.-.++-+.||||+.+++.|.....
T Consensus       184 ~~gid~~~lnl~tkl~e~hsgelwrgrw--qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppn  261 (448)
T KOG0195|consen  184 YTGIDVSSLNLITKLAESHSGELWRGRW--QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPN  261 (448)
T ss_pred             ccCcchhhhhhhhhhccCCCcccccccc--cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCC
Confidence            3445566677888999999999999987  45556777776555555666778888888999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC------------------------------------------Ccccc----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT------------------------------------------SIRPH----------  141 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~------------------------------------------~~~~~----------  141 (218)
                      +.++..|++. +|.+.+.....-                                          +....          
T Consensus       262 lv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsf  341 (448)
T KOG0195|consen  262 LVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSF  341 (448)
T ss_pred             ceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeee
Confidence            9999999986 888777654332                                          00000          


Q ss_pred             ---ccccCCcccCcccccCCCCC--CCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          142 ---IKEVGSPYKAPESRIRSSVY--STPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       142 ---~~~~g~~y~aPE~~~~~~~~--~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                         ...+..+|++||.+.....-  -.++|+|||++++||+-|...||....+..+-..+
T Consensus       342 qe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmki  401 (448)
T KOG0195|consen  342 QEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKI  401 (448)
T ss_pred             eccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhh
Confidence               01223459999977665432  24799999999999999999999876444443333

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.41  E-value=1.3e-12  Score=104.35  Aligned_cols=170  Identities=21%  Similarity=0.217  Sum_probs=127.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGR  113 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~  113 (218)
                      ...+.--+|++.++||+|+||.++.|+..-++++||||.=+..    ...-.+.-|-...+.+ ..++|..+|.+...+.
T Consensus        22 ~~~~VG~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrk----S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~   97 (449)
T KOG1165|consen   22 GVLMVGPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRK----SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGK   97 (449)
T ss_pred             CceEecccceeccccccCcceeeecccccccCceEEEEecccc----CCcchHHHHHHHHHHHcCCCCCCceeeeccccc
Confidence            4446667899999999999999999999999999999985432    1222366677777777 5799999998889999


Q ss_pred             EEEEEEecCCCChHHHhhhcccC----------------------------Ccccccc----------------ccCCc-
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHIK----------------EVGSP-  148 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~~----------------~~g~~-  148 (218)
                      +-.+|||....+|.|...-+...                            +++|.+-                +||.+ 
T Consensus        98 ~NiLVidLLGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK  177 (449)
T KOG1165|consen   98 YNILVIDLLGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAK  177 (449)
T ss_pred             hhhhhhhhhCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchh
Confidence            99999999988888877654432                            5555442                23322 


Q ss_pred             ------------------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc
Q 041487          149 ------------------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN  204 (218)
Q Consensus       149 ------------------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~  204 (218)
                                              ||+.-. .-++.-+.+.|+-|||-++++.+-|.+||.+...+.+.+..+..+.-..
T Consensus       178 ~YrDp~TkqHIPYrE~KSLsGTARYMSINT-HlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr  256 (449)
T KOG1165|consen  178 EYRDPKTKQHIPYREHKSLSGTARYMSINT-HLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKR  256 (449)
T ss_pred             hhcCccccccCccccccccccceeeeEeec-cccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccc
Confidence                                    555442 2244467789999999999999999999999988888887777766555


Q ss_pred             ccchh
Q 041487          205 YLVLP  209 (218)
Q Consensus       205 ~~~~~  209 (218)
                      ...+.
T Consensus       257 ~T~i~  261 (449)
T KOG1165|consen  257 STPIE  261 (449)
T ss_pred             cCCHH
Confidence            44433

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.36  E-value=2.8e-12  Score=98.40  Aligned_cols=157  Identities=22%  Similarity=0.285  Sum_probs=114.5

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC-CCeeeeeeeEEe
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-DNIVRLLDVLTT  111 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~  111 (218)
                      .....+..++|.+++.||.|+||.+|+|....+|..||||.-....    ..-.+..|..+-+.+++ ..|+.+..+..+
T Consensus         7 s~~~~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a----~hpqL~yEskvY~iL~~g~GiP~i~~y~~e   82 (341)
T KOG1163|consen    7 SLEELIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA----KHPQLLYESKVYRILQGGVGIPHIRHYGTE   82 (341)
T ss_pred             chhhheeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccC----CCcchhHHHHHHHHhccCCCCchhhhhccc
Confidence            3345577899999999999999999999999999999999854322    12347778888888854 678888888889


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC----------------------------Ccccccc--------------ccCCc-
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHIK--------------EVGSP-  148 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~~--------------~~g~~-  148 (218)
                      ...-++||+....+|.+...-+...                            +++|.+-              +||.+ 
T Consensus        83 ~~ynvlVMdLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaK  162 (341)
T KOG1163|consen   83 KDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAK  162 (341)
T ss_pred             cccceeeeeccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchh
Confidence            9999999999988887776543322                            6666542              23322 


Q ss_pred             ------------------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          149 ------------------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       149 ------------------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                                              |.+-- ..-+..-+.+.|+-|+|.+|.++--|.+||.+.....-++
T Consensus       163 ky~d~~t~~HIpyre~r~ltGTaRYASin-Ah~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~Q  231 (341)
T KOG1163|consen  163 KYRDIRTRQHIPYREDRNLTGTARYASIN-AHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQ  231 (341)
T ss_pred             hhccccccccCccccCCccceeeeehhhh-hhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHH
Confidence                                    22211 1112224568999999999999999999999884444333

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.28  E-value=7.2e-12  Score=97.31  Aligned_cols=96  Identities=11%  Similarity=0.085  Sum_probs=76.5

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHH------HHHHHHHHhhCCCCCeeee
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSY------LIAGVSLLKELEHDNIVRL  105 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~------~~~e~~~l~~l~h~~iv~~  105 (218)
                      +-..++..++|++++.+|.|+||.||++..  ++..+|+|.+....... ...++      +.+|+..+.++.|++|..+
T Consensus        23 ~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~  100 (232)
T PRK10359         23 EIFDDFLSYNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASL  100 (232)
T ss_pred             HHHHHHhhCceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcc
Confidence            456667889999999999999999999755  57789999997554332 22233      6789999999999999999


Q ss_pred             eeeEEeC--------CEEEEEEecCCC-ChHHHh
Q 041487          106 LDVLTTG--------RYVYLVFEYLDL-DLGSFI  130 (218)
Q Consensus       106 ~~~~~~~--------~~~~lv~E~~~~-~L~~~~  130 (218)
                      .+++...        +..+++|||++| +|.++.
T Consensus       101 ~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~  134 (232)
T PRK10359        101 NDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMP  134 (232)
T ss_pred             eEeeeecccccccccCCeEEEEEEECCccHHHhh
Confidence            9886532        458999999998 887763

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.17  E-value=1.3e-09  Score=89.68  Aligned_cols=144  Identities=23%  Similarity=0.328  Sum_probs=106.0

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCC-cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC----CCeeeeeeeE-EeCCEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH----DNIVRLLDVL-TTGRYV  115 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~-~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h----~~iv~~~~~~-~~~~~~  115 (218)
                      +|++.+.||+|+||.||.+.+...+ ..+|+|.-........  ..+..|..++..+..    +++.++++.. ......
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~--~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~   96 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKP--SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFN   96 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCC--ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCcee
Confidence            8999999999999999999987664 6789998764322221  257788888888862    6899999999 478899


Q ss_pred             EEEEecCCCChHHHhhhcccC-----------------------------Cccccc----------------ccc-----
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI----------------KEV-----  145 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~----------------~~~-----  145 (218)
                      |+||+.+..+|.+........                             +++|.+                .++     
T Consensus        97 ~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~  176 (322)
T KOG1164|consen   97 FIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARR  176 (322)
T ss_pred             EEEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCcc
Confidence            999999988888876544321                             111111                011     


Q ss_pred             ----------------------CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----------------------GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----------------------g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                            |+. |.++. ...+...+.+.|+||++.++.++..|..||....
T Consensus       177 ~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~-~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~  241 (322)
T KOG1164|consen  177 FKYVGDSGGNLRPPRPQKGLFRGTLRYASIN-VHLGIEQGRRDDLESLFYMLLELLKGSLPWEALE  241 (322)
T ss_pred             ccccCCCCcccccCCCCccCCCCccccccHH-HhCCCccCCchhhhhHHHHHHHHhcCCCCCcccc
Confidence                                  222 44444 4455667889999999999999999999997763

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.16  E-value=1.7e-09  Score=86.85  Aligned_cols=143  Identities=32%  Similarity=0.599  Sum_probs=111.8

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCC-chHHHHHHHHHHhhCCCC-CeeeeeeeEEeCCEEEEEEe
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG-VPSYLIAGVSLLKELEHD-NIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~e~~~l~~l~h~-~iv~~~~~~~~~~~~~lv~E  120 (218)
                      |.+...||.|+|+.||.+.+.   ..+++|.+........ ....+.+|+.++..+.|+ +++++.+.+......+++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            788999999999999999975   8899999876554443 578899999999999888 79999999988888999999


Q ss_pred             cCCC-ChHHHhhhcc---cC---------------------------Cccc------------cccccC-----------
Q 041487          121 YLDL-DLGSFIRKHT---IT---------------------------SIRP------------HIKEVG-----------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~---~~---------------------------~~~~------------~~~~~g-----------  146 (218)
                      ++.+ ++.+++....   ..                           +++|            ...++|           
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~  158 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST  158 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCcc
Confidence            9987 7776665442   11                           1111            111121           


Q ss_pred             -------------CcccCcccccCC--CCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------------SPYKAPESRIRS--SVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------------~~y~aPE~~~~~--~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                   ..|++||.+...  ..+....|+||+|++++++++|..||....
T Consensus       159 ~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~  215 (384)
T COG0515         159 SSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEK  215 (384)
T ss_pred             ccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence                         239999966553  568899999999999999999999987764

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.10  E-value=1.6e-10  Score=86.38  Aligned_cols=42  Identities=19%  Similarity=0.329  Sum_probs=35.9

Q ss_pred             cCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 ~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      .+..|+|||.+ .+..++.++|||||||++|+|+||+.||...
T Consensus        66 g~~~y~aPE~~-~~~~~~~~~DiwSlG~il~elltg~~p~~~~  107 (176)
T smart00750       66 VDPYFMAPEVI-QGQSYTEKADIYSLGITLYEALDYELPYNEE  107 (176)
T ss_pred             CcccccChHHh-cCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            44669999955 5556899999999999999999999999765

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.06  E-value=4.2e-11  Score=102.51  Aligned_cols=144  Identities=22%  Similarity=0.327  Sum_probs=102.2

Q ss_pred             EeeecCceEEEEEEE---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           48 KIGQGVFGEVYKCLN---LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~---~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      ++|+|+||.|+++..   .+.+..+|+|+.++.........+...|..++...+ ||.+++++..++.....+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            378999999988753   346778999998876654444447777888888885 9999999999999999999999985


Q ss_pred             C-ChHHHhhhcccC---------------------------Cccccc-----------c-------------ccC-Cccc
Q 041487          124 L-DLGSFIRKHTIT---------------------------SIRPHI-----------K-------------EVG-SPYK  150 (218)
Q Consensus       124 ~-~L~~~~~~~~~~---------------------------~~~~~~-----------~-------------~~g-~~y~  150 (218)
                      + .+--.+......                           +.++++           .             .+| .-||
T Consensus        81 gg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eym  160 (612)
T KOG0603|consen   81 GGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYR  160 (612)
T ss_pred             cchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhhcccchhhh
Confidence            4 221111110000                           111111           1             133 3399


Q ss_pred             CcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          151 APESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       151 aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                      |||...   ....++|.||||+++++++||..||..   +.+.++.+
T Consensus       161 ApEI~~---gh~~a~D~ws~gvl~felltg~~pf~~---~~~~~Il~  201 (612)
T KOG0603|consen  161 APEIIN---GHLSAADWWSFGVLAFELLTGTLPFGG---DTMKRILK  201 (612)
T ss_pred             hhHhhh---ccCCcccchhhhhhHHHHhhCCCCCch---HHHHHHhh
Confidence            999543   368899999999999999999999987   56666555

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.05  E-value=1.4e-10  Score=104.47  Aligned_cols=145  Identities=26%  Similarity=0.378  Sum_probs=92.9

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE----eCCE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT----TGRY  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----~~~~  114 (218)
                      ..++|..++.|..|++|.||.+.++.+.+++|+|+-+...        +.+.  ++....+|.+|   +-|.    .-+.
T Consensus        81 ~e~df~~IklisngAygavylvrh~~trqrfa~kiNkq~l--------ilRn--ilt~a~npfvv---gDc~tllk~~g~  147 (1205)
T KOG0606|consen   81 SESDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINKQNL--------ILRN--ILTFAGNPFVV---GDCATLLKNIGP  147 (1205)
T ss_pred             CccccceeEeeccCCCCceeeeeccccccchhhcccccch--------hhhc--cccccCCccee---chhhhhcccCCC
Confidence            3567999999999999999999999999999996533211        1111  34445566554   1111    0000


Q ss_pred             ----EEEEEecC--------------------C-CChHHHhhhcccC----------Ccccc------ccccCCc-ccCc
Q 041487          115 ----VYLVFEYL--------------------D-LDLGSFIRKHTIT----------SIRPH------IKEVGSP-YKAP  152 (218)
Q Consensus       115 ----~~lv~E~~--------------------~-~~L~~~~~~~~~~----------~~~~~------~~~~g~~-y~aP  152 (218)
                          .++..||.                    . .+|.||...+...          .|...      -..+|++ |.||
T Consensus       148 lPvdmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaP  227 (1205)
T KOG0606|consen  148 LPVDMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAP  227 (1205)
T ss_pred             CcchhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccCh
Confidence                11222332                    1 2556665443221          11111      1225655 8999


Q ss_pred             ccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          153 ESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       153 E~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                      |++...+ |+..+|+|++|+++|+.+.|+.||.+..++.+.-.+-
T Consensus       228 eVilrqg-ygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~vi  271 (1205)
T KOG0606|consen  228 EVILRQG-YGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVI  271 (1205)
T ss_pred             hhhhhhc-cCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhh
Confidence            9666555 8999999999999999999999999997777665443

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.05  E-value=1.1e-09  Score=90.93  Aligned_cols=87  Identities=15%  Similarity=0.053  Sum_probs=68.0

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEcc-CCcEEEEEEeecCCC---CCCchHHHHHHHHHHhhCCCCCeee-eeeeEEe
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLE-TGKKVAIKMINIQNE---PEGVPSYLIAGVSLLKELEHDNIVR-LLDVLTT  111 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~-~~~~~~~  111 (218)
                      ....++|.+.+.||+|+||.||+|.++. +++.+|||.......   .....+.+.+|+.+++.++|++++. +++    
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~----   89 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA----   89 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE----
Confidence            3457889999999999999999998876 677789998653321   2233567999999999999999885 443    


Q ss_pred             CCEEEEEEecCCC-ChH
Q 041487          112 GRYVYLVFEYLDL-DLG  127 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~  127 (218)
                      .+..|+||||+++ +|.
T Consensus        90 ~~~~~LVmE~~~G~~L~  106 (365)
T PRK09188         90 TGKDGLVRGWTEGVPLH  106 (365)
T ss_pred             cCCcEEEEEccCCCCHH
Confidence            2458999999987 564

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.96  E-value=3e-10  Score=103.93  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                      |+|||.+. +..++.++|||||||++|||++|.+|+..
T Consensus       181 Y~APE~~~-~~~~~~~sDVwSlGviL~ELl~~~~~~~~  217 (793)
T PLN00181        181 YTSPEEDN-GSSSNCASDVYRLGVLLFELFCPVSSREE  217 (793)
T ss_pred             eEChhhhc-cCCCCchhhhhhHHHHHHHHhhCCCchhh
Confidence            99999654 45589999999999999999999998864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.96  E-value=1.5e-10  Score=104.77  Aligned_cols=141  Identities=22%  Similarity=0.375  Sum_probs=100.5

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHH---HHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIA---GVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~---e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .+...+.||.+.|=+|.+|++  +...|+||++-+....-. .+.+.+   |+. ....++||.+.+.-+...+...|+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~--~eG~vVvKVFvk~~p~~s-L~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylv   99 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKD--REGLVVVKVFVKQDPTIS-LRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLV   99 (1431)
T ss_pred             ceeeecccCchhhhhhhhccC--CCceEEEEEEeccCCCCC-chHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHH
Confidence            688999999999999999976  555699999975542221 222222   333 4555899999998887788888999


Q ss_pred             EecCCCChHHHhhhcccC---------------------------Ccccccc---------------------------c
Q 041487          119 FEYLDLDLGSFIRKHTIT---------------------------SIRPHIK---------------------------E  144 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~~~---------------------------~~~~~~~---------------------------~  144 (218)
                      -+|+..+|.|.+..++-.                           |++.++.                           +
T Consensus       100 RqyvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPad  179 (1431)
T KOG1240|consen  100 RQYVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPAD  179 (1431)
T ss_pred             HHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCccCCCCCccc
Confidence            999987887776543332                           3333321                           0


Q ss_pred             ----cC-----CcccCcccccCC---------CC-CCCcchHHHHHHHHHHHHh-CCCCCCC
Q 041487          145 ----VG-----SPYKAPESRIRS---------SV-YSTPHDVWAVGCIFAEMVS-GKPLFPC  186 (218)
Q Consensus       145 ----~g-----~~y~aPE~~~~~---------~~-~~~~~DiwSlG~~l~~l~t-g~~Pf~~  186 (218)
                          |.     +.|.|||.+...         +. .+++.||||+||++.|+++ |++||..
T Consensus       180 f~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L  241 (1431)
T KOG1240|consen  180 FTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL  241 (1431)
T ss_pred             ceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH
Confidence                11     239999977552         22 5678999999999999999 8999973

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=1e-10  Score=103.00  Aligned_cols=144  Identities=22%  Similarity=0.321  Sum_probs=99.6

Q ss_pred             eEEEEeeecCceEEEEEEEccCCcEEEEEEee----cCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~----~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .....+|.|++|.|+.+........++.|.++    ...........+..|..+-..+.|+|++.....+.......-.|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            46788999999988888877666666666554    12222222333667888888899999998888877666655669


Q ss_pred             ecCCCChHHHhhhc-ccC--------------------------Ccccc-----------cccc----------------
Q 041487          120 EYLDLDLGSFIRKH-TIT--------------------------SIRPH-----------IKEV----------------  145 (218)
Q Consensus       120 E~~~~~L~~~~~~~-~~~--------------------------~~~~~-----------~~~~----------------  145 (218)
                      |||+.+|..++... ...                          ++++.           +.++                
T Consensus       401 E~~~~Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~  480 (601)
T KOG0590|consen  401 EYCPYDLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHE  480 (601)
T ss_pred             hcccHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhh
Confidence            99988776666553 111                          22221           1122                


Q ss_pred             ------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                            ..+|+|||++....+-....||||.|++++.|.+|+.||-..
T Consensus       481 ~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a  528 (601)
T KOG0590|consen  481 SSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVA  528 (601)
T ss_pred             hcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccc
Confidence                  235999996555553445699999999999999999999765

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.86  E-value=9e-09  Score=82.49  Aligned_cols=146  Identities=21%  Similarity=0.333  Sum_probs=89.2

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCC----------CCCeeeeeeeEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELE----------HDNIVRLLDVLT  110 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~----------h~~iv~~~~~~~  110 (218)
                      .+.....||.|+++.||.+++-.+++.+|+|++.... ......+.+.+|......+.          |-.++-.++...
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            3566789999999999999999999999999997544 33455777777776554432          222333333321


Q ss_pred             ---------eCC--------EEEEEEecCCCChHHHhhh---c-ccC------------------------------Ccc
Q 041487          111 ---------TGR--------YVYLVFEYLDLDLGSFIRK---H-TIT------------------------------SIR  139 (218)
Q Consensus       111 ---------~~~--------~~~lv~E~~~~~L~~~~~~---~-~~~------------------------------~~~  139 (218)
                               ...        ..+++|+-+..+|.+++..   . ...                              +++
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~  172 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK  172 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccc
Confidence                     111        2477888887777776542   1 000                              223


Q ss_pred             ccc--------------------------cccCCcccCcccccCC-------CCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          140 PHI--------------------------KEVGSPYKAPESRIRS-------SVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       140 ~~~--------------------------~~~g~~y~aPE~~~~~-------~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                      +.+                          ..+...|.+||.....       -.++.+.|.|+||+++|.|.++..||..
T Consensus       173 ~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~  252 (288)
T PF14531_consen  173 PENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGL  252 (288)
T ss_dssp             GGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCC
T ss_pred             eeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCC
Confidence            322                          1223336666633221       2378899999999999999999999987


Q ss_pred             C
Q 041487          187 G  187 (218)
Q Consensus       187 ~  187 (218)
                      .
T Consensus       253 ~  253 (288)
T PF14531_consen  253 S  253 (288)
T ss_dssp             C
T ss_pred             C
Confidence            6

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=1.3e-08  Score=92.69  Aligned_cols=142  Identities=21%  Similarity=0.317  Sum_probs=103.0

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC---CCCeeeeeeeE
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE---HDNIVRLLDVL  109 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~~  109 (218)
                      ...-++....|.|.+.||+|+||+||.|...+ +..||+|+-+....++     |-.-.+++.+|+   -+.|..+....
T Consensus       690 ~~~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~WE-----fYI~~q~~~RLk~~~~~~~~~~~~a~  763 (974)
T KOG1166|consen  690 NTEFEVGGEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPWE-----FYICLQVMERLKPQMLPSIMHISSAH  763 (974)
T ss_pred             cceeeecceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCcee-----eeehHHHHHhhchhhhcchHHHHHHH
Confidence            34445677889999999999999999999876 9999999876554443     112233445554   34566666666


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc------------------c
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI------------------K  143 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~------------------~  143 (218)
                      ...+.-++|+||.+. +|.|++......                           |++|.+                  .
T Consensus       764 ~~~~~S~lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lI  843 (974)
T KOG1166|consen  764 VFQNASVLVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLI  843 (974)
T ss_pred             ccCCcceeeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEE
Confidence            667778899999986 999988743332                           444432                  2


Q ss_pred             ccCCc--------------------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCC
Q 041487          144 EVGSP--------------------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK  181 (218)
Q Consensus       144 ~~g~~--------------------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~  181 (218)
                      +||.+                    +-.+| ...++++++..|.|.++.+++-|+.|+
T Consensus       844 DfG~siDm~lfp~~~~F~~~~~td~f~C~E-M~~grpWtYq~DyfGlAa~~h~mLFG~  900 (974)
T KOG1166|consen  844 DFGRSIDMKLFPDGTKFKAVWHTDLFDCIE-MREGRPWTYQIDYFGLAATVHVMLFGK  900 (974)
T ss_pred             ecccceeeeEcCCCcEEeeeeccccchhHH-HhcCCCCchhhhhHHHHHHHHHHHHHH
Confidence            23222                    66788 677888999999999999999999986

>PRK10345 hypothetical protein; Provisional

Probab=98.74  E-value=7.6e-08  Score=74.23  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=64.5

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-----CCCCeeeeeeeEEeCC---E-E
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-----EHDNIVRLLDVLTTGR---Y-V  115 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-----~h~~iv~~~~~~~~~~---~-~  115 (218)
                      -.+.||+|++|.||.  +..++.. +||++....  ....+.+.+|+.+++.+     +||||+++++++.++.   . +
T Consensus         6 ~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~--~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          6 EQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRG--DGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             CcceecCCCceEEEE--CCCCcCe-EEEEEeccc--cchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            357899999999995  5556555 689886532  22356789999999999     6799999999998763   4 3


Q ss_pred             EEEEecCC--C-ChHHHhhhc
Q 041487          116 YLVFEYLD--L-DLGSFIRKH  133 (218)
Q Consensus       116 ~lv~E~~~--~-~L~~~~~~~  133 (218)
                      .+|+||+.  + +|.+++...
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~  101 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQC  101 (210)
T ss_pred             EEEecCCCCcchhHHHHHHcc
Confidence            47899954  4 999998653

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.68  E-value=3.9e-08  Score=74.79  Aligned_cols=77  Identities=22%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCc------------------------hHHHHHHHHHHhhCCCCC
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV------------------------PSYLIAGVSLLKELEHDN  101 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~------------------------~~~~~~e~~~l~~l~h~~  101 (218)
                      .+.||+|++|.||+|.+. +|+.||+|+++........                        .....+|+..+.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            468999999999999986 8999999999764321111                        122345889999998777


Q ss_pred             eeeeeeeEEeCCEEEEEEecCCCC
Q 041487          102 IVRLLDVLTTGRYVYLVFEYLDLD  125 (218)
Q Consensus       102 iv~~~~~~~~~~~~~lv~E~~~~~  125 (218)
                      +..........  .++||||++++
T Consensus        81 v~~p~~~~~~~--~~iVmE~i~g~  102 (190)
T cd05147          81 IPCPEPILLKS--HVLVMEFIGDD  102 (190)
T ss_pred             CCCCcEEEecC--CEEEEEEeCCC
Confidence            65443332222  38999999973

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.64  E-value=3.9e-08  Score=88.43  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=38.6

Q ss_pred             CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          146 GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       146 g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                      +..|+|||.+. +..++.++|||||||++|||++|+.||.+.....+..
T Consensus       543 T~~Y~APE~l~-~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~~~~  590 (669)
T cd05610         543 TPDYLAPELLL-GKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQ  590 (669)
T ss_pred             CccccCHHHcC-CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            34599999665 4558999999999999999999999998765444433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.60  E-value=1.8e-07  Score=71.05  Aligned_cols=77  Identities=19%  Similarity=0.166  Sum_probs=56.8

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCc------------------------hHHHHHHHHHHhhCCCCC
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV------------------------PSYLIAGVSLLKELEHDN  101 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~------------------------~~~~~~e~~~l~~l~h~~  101 (218)
                      .+.||+|++|.||+|.+. +|+.||+|+++........                        ...+..|...+.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            578999999999999976 8999999999865321100                        223457888999999988


Q ss_pred             eeeeeeeEEeCCEEEEEEecCCCC
Q 041487          102 IVRLLDVLTTGRYVYLVFEYLDLD  125 (218)
Q Consensus       102 iv~~~~~~~~~~~~~lv~E~~~~~  125 (218)
                      +.....+....  .++||||+++.
T Consensus        81 i~~p~~~~~~~--~~lVmE~~~g~  102 (190)
T cd05145          81 VPVPEPILLKK--NVLVMEFIGDD  102 (190)
T ss_pred             CCCceEEEecC--CEEEEEEecCC
Confidence            75554444333  48999999874

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.49  E-value=6.1e-07  Score=69.00  Aligned_cols=84  Identities=15%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCC------chHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG------VPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~------~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +.||+|++|.||+|..  .+..+++|..........      ...++.+|+.++..+.|++++....++......+++||
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEE
Confidence            5789999999999986  778899998654322111      12467789999999999998887777777778899999


Q ss_pred             cCCC-ChHHHhhh
Q 041487          121 YLDL-DLGSFIRK  132 (218)
Q Consensus       121 ~~~~-~L~~~~~~  132 (218)
                      |+++ +|.+++..
T Consensus        80 ~~~G~~L~~~~~~   92 (211)
T PRK14879         80 YIEGEPLKDLINS   92 (211)
T ss_pred             EeCCcCHHHHHHh
Confidence            9988 88877654

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.42  E-value=1.9e-06  Score=66.11  Aligned_cols=81  Identities=16%  Similarity=0.013  Sum_probs=59.1

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC--CCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP--EGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      +.+...|++|.||.|+.+..  .+..++.+.+......  .-....+.+|+++++++. |+++++++++    +..+++|
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvm   77 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDR   77 (218)
T ss_pred             cccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEE
Confidence            34567899999999997754  7788887776532211  111236889999999995 5889999875    3469999


Q ss_pred             ecCCC-ChHHH
Q 041487          120 EYLDL-DLGSF  129 (218)
Q Consensus       120 E~~~~-~L~~~  129 (218)
                      ||+.+ +|.+.
T Consensus        78 eyI~G~~L~~~   88 (218)
T PRK12274         78 SYLAGAAMYQR   88 (218)
T ss_pred             eeecCccHHhh
Confidence            99987 66543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.40  E-value=5.7e-07  Score=76.86  Aligned_cols=94  Identities=20%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             HhhCCCCCeeeeeeeEEeCCEEEEEEecCCC-ChHHHhhhcccC------------------------------------
Q 041487           94 LKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT------------------------------------  136 (218)
Q Consensus        94 l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~------------------------------------  136 (218)
                      |+.+.|.|+.++++.+.++...++|.+||.. +|.|.+......                                    
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nC   80 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNC   80 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccc
Confidence            4567899999999999999999999999986 888877663221                                    


Q ss_pred             ----CccccccccCC--------------------cccCcccccCC--CC----CCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          137 ----SIRPHIKEVGS--------------------PYKAPESRIRS--SV----YSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       137 ----~~~~~~~~~g~--------------------~y~aPE~~~~~--~~----~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                          ....+++++|.                    -|.|||.+...  ..    .+.++||||||++++|+++.+.||+.
T Consensus        81 lvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~  160 (484)
T KOG1023|consen   81 LVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDL  160 (484)
T ss_pred             eeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcccc
Confidence                00011112221                    18999955442  11    46679999999999999999999987


Q ss_pred             C
Q 041487          187 G  187 (218)
Q Consensus       187 ~  187 (218)
                      .
T Consensus       161 ~  161 (484)
T KOG1023|consen  161 R  161 (484)
T ss_pred             c
Confidence            4

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.37  E-value=1.7e-06  Score=65.91  Aligned_cols=83  Identities=17%  Similarity=0.080  Sum_probs=61.2

Q ss_pred             EeeecCceEEEEEEEccCCcEEEEEEeecCCCCCC------chHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           48 KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG------VPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        48 ~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~------~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      .||+|++|.||++..  .+..+++|..........      ...++.+|+.++..+.|+++.....++......+++|||
T Consensus         1 ~ig~G~~~~vy~~~~--~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF--LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEeec--CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
Confidence            379999999999984  678899998653321111      135677899999999888766555555566667899999


Q ss_pred             CCC-ChHHHhhh
Q 041487          122 LDL-DLGSFIRK  132 (218)
Q Consensus       122 ~~~-~L~~~~~~  132 (218)
                      +++ +|.+++..
T Consensus        79 ~~g~~l~~~~~~   90 (199)
T TIGR03724        79 IEGKPLKDVIEE   90 (199)
T ss_pred             ECCccHHHHHhh
Confidence            987 88776544

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00090 RIO RIO-like kinase

Probab=98.30  E-value=1.5e-06  Score=68.35  Aligned_cols=83  Identities=19%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             eeEEEEeeecCceEEEEEE-EccCCcEEEEEEeecCCCCCC----------------------chHHHHHHHHHHhhCCC
Q 041487           43 YKVVEKIGQGVFGEVYKCL-NLETGKKVAIKMINIQNEPEG----------------------VPSYLIAGVSLLKELEH   99 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~-~~~~~~~vaiK~~~~~~~~~~----------------------~~~~~~~e~~~l~~l~h   99 (218)
                      |.+.+.||+|++|.||+|. +..+|+.||+|+++.......                      ....+..|+..+.++.+
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~  109 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE  109 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999998 667899999999975431100                      11245689999999965


Q ss_pred             C--CeeeeeeeEEeCCEEEEEEecCCC-ChHHH
Q 041487          100 D--NIVRLLDVLTTGRYVYLVFEYLDL-DLGSF  129 (218)
Q Consensus       100 ~--~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~  129 (218)
                      .  .++++++.   . ..++||||+++ ++..+
T Consensus       110 ~~i~~p~~~~~---~-~~~lV~E~~~g~~L~~~  138 (237)
T smart00090      110 AGVPVPKPIAW---R-RNVLVMEFIGGDGLPAP  138 (237)
T ss_pred             cCCCCCeeeEe---c-CceEEEEEecCCccccc
Confidence            3  33444432   2 35899999998 55544

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.17  E-value=8.9e-06  Score=71.52  Aligned_cols=87  Identities=20%  Similarity=0.132  Sum_probs=63.8

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CC-----CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EP-----EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~-----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      |...+.||+|+||.||++...  +..+++|...... ..     ....+++.+|+.+++.++|++++....++......+
T Consensus       335 ~~~~~~iG~G~~g~Vy~~~~~--~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~  412 (535)
T PRK09605        335 KIPDHLIGKGAEADIKKGEYL--GRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKT  412 (535)
T ss_pred             cCccceeccCCcEEEEEEeec--CccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCE
Confidence            456789999999999999863  3344444322111 11     112357889999999999999988877777777789


Q ss_pred             EEEecCCC-ChHHHhh
Q 041487          117 LVFEYLDL-DLGSFIR  131 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~  131 (218)
                      +||||+++ +|.+++.
T Consensus       413 lv~E~~~g~~L~~~l~  428 (535)
T PRK09605        413 IVMEYIGGKDLKDVLE  428 (535)
T ss_pred             EEEEecCCCcHHHHHH
Confidence            99999988 8888763

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=3e-07  Score=81.37  Aligned_cols=148  Identities=25%  Similarity=0.388  Sum_probs=107.1

Q ss_pred             ccceeEEEEeeecCceEEEEEEEc-cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~l  117 (218)
                      ...|.+.+.||+|+|+.|-..... .....+|.|.+...........++..|..+-..+. |.|++++++........++
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            566888999999999999888753 34556777776544433445566677888777786 9999999999999999999


Q ss_pred             EEecCCC-ChHHHh-hhcccC-----------------------------Cccccc------------------------
Q 041487          118 VFEYLDL-DLGSFI-RKHTIT-----------------------------SIRPHI------------------------  142 (218)
Q Consensus       118 v~E~~~~-~L~~~~-~~~~~~-----------------------------~~~~~~------------------------  142 (218)
                      .+++..+ ++.+.+ ......                             ++.|.+                        
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~  178 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNK  178 (601)
T ss_pred             ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhcccccc
Confidence            9999754 333333 111100                             111111                        


Q ss_pred             --------ccc--CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          143 --------KEV--GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       143 --------~~~--g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              ..+  +.+|.|||...+.++.+...|+||+|+++..+++|..||...
T Consensus       179 ~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~  233 (601)
T KOG0590|consen  179 NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFP  233 (601)
T ss_pred             CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccc
Confidence                    112  345999997776677889999999999999999999999866

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.10  E-value=5.5e-06  Score=68.52  Aligned_cols=32  Identities=25%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             hhhhhhhhccceeEEEEeeecCceEEEEEEEc
Q 041487           32 SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNL   63 (218)
Q Consensus        32 ~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~   63 (218)
                      .....++..++|.+..-||+|....||.+...
T Consensus       148 ~r~dskFtiddyeiG~~igkGC~AaVY~A~~~  179 (598)
T KOG4158|consen  148 NRIDSKFTIDDYEIGEFIGKGCNAAVYSARLA  179 (598)
T ss_pred             chhhcccchhhhcccchhhccchhhhhhhhcC
Confidence            34566678899999999999999999998754

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.07  E-value=1e-05  Score=61.74  Aligned_cols=82  Identities=23%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC--------------------CchHHHHHHHHHHhhCCCC--
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE--------------------GVPSYLIAGVSLLKELEHD--  100 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~--------------------~~~~~~~~e~~~l~~l~h~--  100 (218)
                      |.+.+.||+|+||.||++.. .+++.+|+|+++......                    ........|..++..+.++  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALD-PDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEc-CCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            77889999999999999986 479999999976432110                    0112356788888888766  


Q ss_pred             CeeeeeeeEEeCCEEEEEEecCCC-ChHHH
Q 041487          101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSF  129 (218)
Q Consensus       101 ~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~  129 (218)
                      .++..++    ....+++|||+++ +|.+.
T Consensus        96 ~v~~~~~----~~~~~lv~e~~~g~~L~~~  121 (198)
T cd05144          96 PVPKPID----WNRHAVVMEYIDGVELYRV  121 (198)
T ss_pred             CCCceee----cCCceEEEEEeCCcchhhc
Confidence            3444443    2446899999998 66544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=5.8e-06  Score=71.07  Aligned_cols=160  Identities=20%  Similarity=0.262  Sum_probs=112.9

Q ss_pred             hhhhhccceeEEEEeee--cCceEEEEEEE--ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeE
Q 041487           35 MEKVKDWNYKVVEKIGQ--GVFGEVYKCLN--LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVL  109 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~--G~~g~v~~~~~--~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~  109 (218)
                      ........+.+.+.+|.  |.+|.+|.+..  +.++..+|+|.-+..........+-.+|+.....+ .|++.++.+..+
T Consensus       108 ~~s~~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~  187 (524)
T KOG0601|consen  108 FDSFFDQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAW  187 (524)
T ss_pred             ccchhhhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccc
Confidence            33445566888999999  99999999988  78889999998654443334445556777777777 699999999999


Q ss_pred             EeCCEEEEEEecCCCChHHHhhhcccC--------------------------------Cccccc---------------
Q 041487          110 TTGRYVYLVFEYLDLDLGSFIRKHTIT--------------------------------SIRPHI---------------  142 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~~L~~~~~~~~~~--------------------------------~~~~~~---------------  142 (218)
                      ...+..++-+|.|+.+|..+......-                                +.++..               
T Consensus       188 e~~~~lfiqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df  267 (524)
T KOG0601|consen  188 EGSGILFIQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDF  267 (524)
T ss_pred             ccCCcceeeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCc
Confidence            999999999999986666654432110                                000000               


Q ss_pred             -------------------c-ccCCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          143 -------------------K-EVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       143 -------------------~-~~g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                                         + ..+..|++||. .++. ++...||+|+|.+..+..++..+........+.++.
T Consensus       268 ~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~-~~~l-~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r  339 (524)
T KOG0601|consen  268 GLVSKISDGNFSSVFKVSKRPEGDCIYAAKEL-LNGL-ATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR  339 (524)
T ss_pred             ceeEEccCCccccceeeeecCCCCceEeChhh-hccc-cchHhhhcchhhhhHhhHhhcccccCCCCCCccccc
Confidence                               0 12334999994 4443 799999999999999999987666555344444443

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.99  E-value=2e-05  Score=56.47  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC--CCeeeeeeeEEeCCEEEEEEecC
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH--DNIVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h--~~iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      +.+.||.|.++.||++..  .+..+++|.......    ...+.+|+..++.+.+  .++++++.....++..+++|||+
T Consensus         2 ~~~~i~~g~~~~v~~~~~--~~~~~~iK~~~~~~~----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGT--KDEDYVLKINPSREK----GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             cceecccccccceEEEEe--cCCeEEEEecCCCCc----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEec
Confidence            457899999999999987  347899998764322    4678899999999966  58999988888878899999999


Q ss_pred             CC-ChH
Q 041487          123 DL-DLG  127 (218)
Q Consensus       123 ~~-~L~  127 (218)
                      .+ .+.
T Consensus        76 ~g~~~~   81 (155)
T cd05120          76 EGETLD   81 (155)
T ss_pred             CCeecc
Confidence            87 443

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.97  E-value=3e-05  Score=67.92  Aligned_cols=63  Identities=27%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             EEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           59 KCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        59 ~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      .|..+.++.+|.+...+....  ...+...+-+.-++.++||||+++++.+...+.+|+|+|.+.
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~--~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~   92 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNG--EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR   92 (690)
T ss_pred             ccceeccCCceEEEEEeCCCc--hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc
Confidence            466678899999998874332  445567777788999999999999999999999999999985

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=2.7e-06  Score=72.21  Aligned_cols=30  Identities=43%  Similarity=0.778  Sum_probs=26.9

Q ss_pred             ccCcccccCCCCCCCcchHHHHHHHHHHHHh
Q 041487          149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS  179 (218)
Q Consensus       149 y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t  179 (218)
                      ||+||+ +.+..|+.++||||||++|+|++.
T Consensus       428 YmsPEQ-i~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  428 YMSPEQ-IRGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             cCCHHH-HhhhhhhhhcchhhHHHHHHHHHH
Confidence            999995 556669999999999999999988

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.76  E-value=7e-05  Score=56.33  Aligned_cols=74  Identities=23%  Similarity=0.256  Sum_probs=48.0

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHH----------------------HHHHHHHHhhCCCCC--
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY----------------------LIAGVSLLKELEHDN--  101 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~----------------------~~~e~~~l~~l~h~~--  101 (218)
                      .+.||+|+||.||+|.+. +++.||+|+++...........                      ...|...+..+.+.+  
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            467999999999999875 7999999998754322111111                      134555555554332  


Q ss_pred             eeeeeeeEEeCCEEEEEEecCCC
Q 041487          102 IVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus       102 iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      +.+.++.    ...+++|||+++
T Consensus        81 ~~~~~~~----~~~~lv~e~~~g   99 (187)
T cd05119          81 VPKPIDL----NRHVLVMEFIGG   99 (187)
T ss_pred             CCceEec----CCCEEEEEEeCC
Confidence            4444432    235899999987

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.65  E-value=1.7e-05  Score=69.27  Aligned_cols=36  Identities=11%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecC
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ   77 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~   77 (218)
                      ..|.. +.||.|++|+||+|+.+++|+.||||+.++.
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~  155 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD  155 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence            34666 7899999999999999878999999999754

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.49  E-value=3.2e-05  Score=70.87  Aligned_cols=157  Identities=17%  Similarity=0.200  Sum_probs=98.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...+.+.+.+-+-+|+++.++.+.-...+-..++|...... ......+...++-.++-...+|.+++....+......+
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~  880 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLP  880 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcc
Confidence            45677888999999999999998766666555555443222 11112333334434444445678887776666777899


Q ss_pred             EEEecCCC-ChHHHhhhcccC-----------------------------------------------------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT-----------------------------------------------------------  136 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~-----------------------------------------------------------  136 (218)
                      ++++|.++ +|..-+...+..                                                           
T Consensus       881 L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~  960 (1205)
T KOG0606|consen  881 LVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPT  960 (1205)
T ss_pred             hhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccccccCc
Confidence            99998842 222221111100                                                           


Q ss_pred             ---------------------------CccccccccC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          137 ---------------------------SIRPHIKEVG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       137 ---------------------------~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                                 +.+.+....| ..|.+||... +...+..+|+|++|+++++.++|.+||+...
T Consensus       961 ~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~l-g~~hgs~ad~~~~g~~l~e~l~g~pp~na~t 1039 (1205)
T KOG0606|consen  961 TDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILL-GRRHGSAADWWSSGVCLFEVLTGIPPFNAET 1039 (1205)
T ss_pred             CCcccccccCccccccccccccccccchhhccccccCCCcccCCcccc-cccCCCcchhhhhhhhhhhhhcCCCCCCCcc
Confidence                                       0000011122 3399999544 5557899999999999999999999999876


Q ss_pred             cchHHHH
Q 041487          189 KDHLSLI  195 (218)
Q Consensus       189 ~~~~~~~  195 (218)
                      +....+-
T Consensus      1040 pq~~f~n 1046 (1205)
T KOG0606|consen 1040 PQQIFEN 1046 (1205)
T ss_pred             hhhhhhc
Confidence            6666543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.08  E-value=0.0017  Score=49.84  Aligned_cols=82  Identities=12%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCC--CeeeeeeeEEeC---CEEEEEEec
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD--NIVRLLDVLTTG---RYVYLVFEY  121 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~--~iv~~~~~~~~~---~~~~lv~E~  121 (218)
                      +.|+.|..+.+|++... .|..+++|........ .....+.+|..+++.+.+.  .+++++.+....   +..+++|||
T Consensus         4 ~~l~~G~~n~~~~v~~~-~g~~~ilK~~~~~~~~-~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~   81 (223)
T cd05154           4 RQLSGGQSNLTYLLTAG-GGRRLVLRRPPPGALL-PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMER   81 (223)
T ss_pred             eecCCCccceEEEEEec-CCcceEEEeCCCcccC-cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEE
Confidence            57899999999999863 3589999997643321 2345688999999998653  456777766543   367899999


Q ss_pred             CCC-ChHHHh
Q 041487          122 LDL-DLGSFI  130 (218)
Q Consensus       122 ~~~-~L~~~~  130 (218)
                      +++ ++.+.+
T Consensus        82 i~G~~l~~~~   91 (223)
T cd05154          82 VDGRVLRDRL   91 (223)
T ss_pred             eCCEecCCCC
Confidence            998 665543

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.04  E-value=0.0019  Score=55.50  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQ   77 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~   77 (218)
                      +.||.|++|+||+|+. .+|+.||||+.++.
T Consensus       123 ~plasaSigQVh~A~l-~~G~~VaVKv~rp~  152 (437)
T TIGR01982       123 KPLAAASIAQVHRARL-VDGKEVAVKVLRPG  152 (437)
T ss_pred             cceeeeehhheEEEEe-cCCCEEEEEeeCCC
Confidence            5699999999999986 47899999998643

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.93  E-value=0.00058  Score=59.02  Aligned_cols=148  Identities=17%  Similarity=0.125  Sum_probs=102.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc-cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      ....+|..+..||.|.|+.|+.+..+ ..+..+++|.+............-..|+.+...+ .|.++++....|......
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~  341 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQG  341 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccc
Confidence            44567899999999999999998866 6788999999876554433334445666666666 689999998888877778


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccccc------------ccc----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI------------KEV----------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~------------~~~----------  145 (218)
                      |+-.|||++ ++..........                           +..+.+            ..+          
T Consensus       342 ~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~  421 (524)
T KOG0601|consen  342 YIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSS  421 (524)
T ss_pred             cCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccccceec
Confidence            899999965 444333211000                           122211            111          


Q ss_pred             -----CCccc-CcccccCCCCCCCcchHHHHHHHHHHHHhCC-CCCC
Q 041487          146 -----GSPYK-APESRIRSSVYSTPHDVWAVGCIFAEMVSGK-PLFP  185 (218)
Q Consensus       146 -----g~~y~-aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~-~Pf~  185 (218)
                           +..++ .+|.+.....+..+.|++|||..+.+.+++. .+.+
T Consensus       422 ~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~  468 (524)
T KOG0601|consen  422 GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSES  468 (524)
T ss_pred             ccccccccccccchhhccccccccccccccccccccccccCcccCcc
Confidence                 11255 3666777777889999999999999999886 3444

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.92  E-value=0.006  Score=48.06  Aligned_cols=84  Identities=13%  Similarity=0.128  Sum_probs=58.0

Q ss_pred             EEee-ecCceEEEEEEEccCCcEEEEEEeecCCC-----------CCCchHHHHHHHHHHhhCCCCCe--eeeeeeEEe-
Q 041487           47 EKIG-QGVFGEVYKCLNLETGKKVAIKMINIQNE-----------PEGVPSYLIAGVSLLKELEHDNI--VRLLDVLTT-  111 (218)
Q Consensus        47 ~~ig-~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-----------~~~~~~~~~~e~~~l~~l~h~~i--v~~~~~~~~-  111 (218)
                      ..|| .|+.|+||.+..  .+..+++|.+.....           ......++.+|+.++..+.|+++  ++.++.... 
T Consensus        37 ~~lg~~~g~gtv~~v~~--~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT--PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             ceeecCCCCccEEEEEe--CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            4566 778888888876  478899998853210           11234678899999999988775  666666432 


Q ss_pred             CC---EEEEEEecCCC--ChHHHhhh
Q 041487          112 GR---YVYLVFEYLDL--DLGSFIRK  132 (218)
Q Consensus       112 ~~---~~~lv~E~~~~--~L~~~~~~  132 (218)
                      ..   ..++|||++++  +|.+++..
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~  140 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQE  140 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhc
Confidence            22   24699999985  78777654

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.59  E-value=0.0083  Score=52.03  Aligned_cols=102  Identities=22%  Similarity=0.303  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhhCCCCCeeeeeeeEEe-CCEEEEEEecCCCChHHHhhhcccCCccccc---cccCCcccCcccccCC--
Q 041487           85 SYLIAGVSLLKELEHDNIVRLLDVLTT-GRYVYLVFEYLDLDLGSFIRKHTITSIRPHI---KEVGSPYKAPESRIRS--  158 (218)
Q Consensus        85 ~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~E~~~~~L~~~~~~~~~~~~~~~~---~~~g~~y~aPE~~~~~--  158 (218)
                      ..+.-....++.+.|+++..+.++-+. ..+..+|||+++.++.|+...+...+..-..   ...+.-|.+-. +..+  
T Consensus        27 ~~ilgr~~~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~~~Sled~~~~~~l~~~s~~~~~~~~~~~~~~td~-~~t~~~  105 (725)
T KOG1093|consen   27 IQILGRFQYLKSLQHDNLCQYLDFSRGKHERVIVVMEHYTMSLEDILKTGNLKDESLLAHGVLHLNIIYITDH-FLTKYP  105 (725)
T ss_pred             HHHhhhhHHHHhhcCccceeeEeeecCccceEEEEehhhccchHHHHHhcccchhhhcccccceehhhhcccc-ccccCC
Confidence            445556778999999999999988763 3458999999999999998776532111100   00000011110 1111  


Q ss_pred             CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          159 SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       159 ~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      -..++++||||+|.++.++..|...+...
T Consensus       106 ~~~~pKsdVwsl~~i~~el~L~~~l~~~~  134 (725)
T KOG1093|consen  106 SPIGPKSDVWSLGFIILELYLGISLEAEL  134 (725)
T ss_pred             CCCCcchhhhhHHHHHHHHHHhhHHHHHH
Confidence            11346999999999999999998877654

>cd05151 ChoK Choline Kinase (ChoK)

Probab=96.49  E-value=0.011  Score=43.35  Aligned_cols=75  Identities=13%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC-eeeeeeeEEeCCEEEEEEecCCC
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN-IVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      ++.++.|..+.||++..  .+..+++|.......   ....+..|+.+++.+.+.+ +++++....  ...++|||++++
T Consensus         3 ~~~l~~G~~~~vy~~~~--~~~~~~lK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv~e~i~G   75 (170)
T cd05151           3 ISPLKGGMTNKNYRVEV--ANKKYVVRIPGNGTE---LLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLITEFIEG   75 (170)
T ss_pred             eeecCCcccCceEEEEE--CCeEEEEEeCCCCcc---cccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEEEEecCC
Confidence            46789999999999986  478899998753321   1223577888888875433 445555433  235799999987


Q ss_pred             -ChH
Q 041487          125 -DLG  127 (218)
Q Consensus       125 -~L~  127 (218)
                       ++.
T Consensus        76 ~~l~   79 (170)
T cd05151          76 SELL   79 (170)
T ss_pred             Cccc
Confidence             554

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.03  E-value=0.014  Score=43.73  Aligned_cols=78  Identities=21%  Similarity=0.264  Sum_probs=55.6

Q ss_pred             eEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCe-eeeeeeEEeCCEEEEEEecC
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI-VRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~E~~  122 (218)
                      +..+.|++|.+|.||++..  .+..+|+|+=+    .++-...+..|++++..+.-.++ .+++.+-.    .++.|||.
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~--~~~~~a~Kvrr----~ds~r~~l~kEakiLeil~g~~~~p~vy~yg~----~~i~me~i   94 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEW--RGGEVALKVRR----RDSPRRNLEKEAKILEILAGEGVTPEVYFYGE----DFIRMEYI   94 (201)
T ss_pred             hhhhhhhcccccEEEEeec--cCceEEEEEec----CCcchhhHHHHHHHHHHhhhcCCCceEEEech----hhhhhhhh
Confidence            4567899999999999987  67799999743    22334678899999988865443 44544332    23559999


Q ss_pred             CC-ChHHHhh
Q 041487          123 DL-DLGSFIR  131 (218)
Q Consensus       123 ~~-~L~~~~~  131 (218)
                      +| .|.+...
T Consensus        95 ~G~~L~~~~~  104 (201)
T COG2112          95 DGRPLGKLEI  104 (201)
T ss_pred             cCcchhhhhh
Confidence            98 7766544

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.98  E-value=0.019  Score=46.98  Aligned_cols=40  Identities=28%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             HHhhCCCCCeeeeeeeEEe-----CCEEEEEEecCCC-ChHHHhhh
Q 041487           93 LLKELEHDNIVRLLDVLTT-----GRYVYLVFEYLDL-DLGSFIRK  132 (218)
Q Consensus        93 ~l~~l~h~~iv~~~~~~~~-----~~~~~lv~E~~~~-~L~~~~~~  132 (218)
                      -+..+.|.||++++.++.+     ..+..+++||+.. ++..|+++
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkr  165 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKR  165 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHH
Confidence            4556689999999999864     3468999999976 88887765

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=94.72  E-value=0.19  Score=38.08  Aligned_cols=89  Identities=17%  Similarity=0.043  Sum_probs=63.0

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecC-C----CCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ-N----EPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~-~----~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .+..+.+|+-+.|+.+..  .|+.++||.=... .    .+. -..++..+|+..+.++.--.|.-..-++.+...-.+.
T Consensus        11 ~l~likQGAEArv~~~~~--~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~   88 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF--SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIY   88 (229)
T ss_pred             cceeeeccceeeEeeecc--CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEE
Confidence            678899999999999976  7888888753221 1    111 1246788899998888655555444455555666799


Q ss_pred             EecCCC--ChHHHhhhccc
Q 041487          119 FEYLDL--DLGSFIRKHTI  135 (218)
Q Consensus       119 ~E~~~~--~L~~~~~~~~~  135 (218)
                      |||+++  ++.+|+.....
T Consensus        89 ME~~~g~~~vk~~i~~~~~  107 (229)
T KOG3087|consen   89 MEFIDGASTVKDFILSTME  107 (229)
T ss_pred             EEeccchhHHHHHHHHHcc
Confidence            999998  88999877544

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=94.66  E-value=0.14  Score=39.14  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=50.9

Q ss_pred             EEEeeecCceEEEEEEEcc------CCcEEEEEEeecCCC-----------C---------CCchHHHH----HHHHHHh
Q 041487           46 VEKIGQGVFGEVYKCLNLE------TGKKVAIKMINIQNE-----------P---------EGVPSYLI----AGVSLLK   95 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~------~~~~vaiK~~~~~~~-----------~---------~~~~~~~~----~e~~~l~   95 (218)
                      ...||.|.-+.||.|...+      .+..+|+|+.+....           +         ..-.+.+.    +|...|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            3579999999999997543      357999999973211           0         01122233    7888888


Q ss_pred             hCCC--CCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           96 ELEH--DNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        96 ~l~h--~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      ++..  -.+++++++    ...++||||+++
T Consensus        82 rl~~~Gv~vP~pi~~----~~~~lvME~Ig~  108 (197)
T cd05146          82 RMQKAGIPCPEVVVL----KKHVLVMSFIGD  108 (197)
T ss_pred             HHHHcCCCCCeEEEe----cCCEEEEEEcCC
Confidence            8843  456666653    457799999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.41  E-value=0.26  Score=37.28  Aligned_cols=85  Identities=13%  Similarity=0.045  Sum_probs=57.6

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCC-----chHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEG-----VPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~-----~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ..+++|+-+.++.+..  -|.++++|.=.++. ...+     -..+..+|+.++.++.-..+....-++.+.+...++||
T Consensus         2 ~~i~~GAEa~i~~~~~--~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me   79 (204)
T COG3642           2 DLIKQGAEAIIYLTDF--LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVME   79 (204)
T ss_pred             chhhCCcceeEEeeec--cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEE
Confidence            3578899999998865  45557776533222 1111     14567789999998866666655555566777789999


Q ss_pred             cCCC-ChHHHhhhc
Q 041487          121 YLDL-DLGSFIRKH  133 (218)
Q Consensus       121 ~~~~-~L~~~~~~~  133 (218)
                      |+++ .|.+++...
T Consensus        80 ~I~G~~lkd~l~~~   93 (204)
T COG3642          80 YIEGELLKDALEEA   93 (204)
T ss_pred             EeCChhHHHHHHhc
Confidence            9999 667677655

>PLN02876 acyl-CoA dehydrogenase

Probab=94.41  E-value=0.22  Score=46.48  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             EEEEeeecCceEEEEEEEccCC--cEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCe--eeeeeeEEeC---CEEE
Q 041487           45 VVEKIGQGVFGEVYKCLNLETG--KKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNI--VRLLDVLTTG---RYVY  116 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~i--v~~~~~~~~~---~~~~  116 (218)
                      -+..++.|..+.+|+......+  ..+++|..+.... ......+.+|..+++.+. |+++  ++++.++.+.   +..|
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~-~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~f  120 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKL-LQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAF  120 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCcc-CccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCce
Confidence            3678899999999998764332  4677777653221 112346889999999985 6664  7777777653   4688


Q ss_pred             EEEecCCCC
Q 041487          117 LVFEYLDLD  125 (218)
Q Consensus       117 lv~E~~~~~  125 (218)
                      +||||+++.
T Consensus       121 lVME~v~G~  129 (822)
T PLN02876        121 YIMEYLEGR  129 (822)
T ss_pred             EEEEecCCc
Confidence            999999983

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=94.23  E-value=0.2  Score=43.68  Aligned_cols=77  Identities=19%  Similarity=0.206  Sum_probs=56.4

Q ss_pred             CceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE----eCCEEEEEEecCCC--Ch
Q 041487           53 VFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT----TGRYVYLVFEYLDL--DL  126 (218)
Q Consensus        53 ~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----~~~~~~lv~E~~~~--~L  126 (218)
                      .-.+.|++....+|-.|++|.+...+.-.  .-....-++..+++.|+|+|.+.++|.    .+..+++|.+|.++  +|
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~--~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL  365 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQS--TNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTL  365 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccC--cccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchH
Confidence            44578999999999999999984322111  111233456789999999999999986    45679999999986  77


Q ss_pred             HHHhh
Q 041487          127 GSFIR  131 (218)
Q Consensus       127 ~~~~~  131 (218)
                      .++.-
T Consensus       366 ~d~~F  370 (655)
T KOG3741|consen  366 YDLYF  370 (655)
T ss_pred             HHHHc
Confidence            76653

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=94.16  E-value=0.54  Score=40.02  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=54.6

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCC---C--CCchHHHHHHHHHHhhCC---CCCeeeeeeeEEeCCEEEE
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE---P--EGVPSYLIAGVSLLKELE---HDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~---~--~~~~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~l  117 (218)
                      .+.||.|.++.||++.....++.++||.-.....   .  .-..++...|.+.|+.+.   -..+++++.+.  ....++
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D--~~~~~l  108 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYD--EELAVT  108 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCCCEE
Confidence            4689999999999999754335899998642211   1  234577888888888762   24577777663  345789


Q ss_pred             EEecCCC
Q 041487          118 VFEYLDL  124 (218)
Q Consensus       118 v~E~~~~  124 (218)
                      |||+++.
T Consensus       109 VME~L~~  115 (401)
T PRK09550        109 VMEDLSD  115 (401)
T ss_pred             EEecCCC
Confidence            9999975

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=93.87  E-value=0.017  Score=51.28  Aligned_cols=134  Identities=15%  Similarity=0.148  Sum_probs=83.2

Q ss_pred             eEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC-eeeeeeeEEeCCEEEEEEecC
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN-IVRLLDVLTTGRYVYLVFEYL  122 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~E~~  122 (218)
                      .....+++++++++++.+...+...+ .+++...       ....-++++|.+++||| .++.++.+..+...++.|+++
T Consensus       245 ~~fh~fvK~altknpKkRptaeklL~-h~fvs~~-------l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~  316 (829)
T KOG0576|consen  245 EFFHNFVKGALTKNPKKRPTAEKLLQ-HPFVSQT-------LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRIC  316 (829)
T ss_pred             HHHHHHHHHHhcCCCccCCChhhhee-ceeeccc-------hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhh
Confidence            44556789999999988654443333 5554322       22334567899999999 777777888888999999998


Q ss_pred             CCC-------------hHHHhhh----cccC------Cc------------------------------cccccccCCcc
Q 041487          123 DLD-------------LGSFIRK----HTIT------SI------------------------------RPHIKEVGSPY  149 (218)
Q Consensus       123 ~~~-------------L~~~~~~----~~~~------~~------------------------------~~~~~~~g~~y  149 (218)
                      ...             +.++.-.    ....      ..                              .+........+
T Consensus       317 s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d~~l~s~~~~~~~~~~v~~~L~~~~~~~t~~~~~~~  396 (829)
T KOG0576|consen  317 STGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRDNILGSEEEVKLLDFAVPPQLTRTMKPRTAIGTPEP  396 (829)
T ss_pred             cCCccccccCChhhHhhhhhhhhhhhhhhcccccccccccccCcccccccccccccccccCCcccCcccccccCCCCCCC
Confidence            521             1111000    0000      00                              00011112238


Q ss_pred             cCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          150 KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       150 ~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                      +|||+ ...+.+..+.|.|++|+-..++.-|-+|-..
T Consensus       397 ~~pev-~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~  432 (829)
T KOG0576|consen  397 LAPEV-IQENTIDGCPDSGSLAVSAIQMAPGLPPRSS  432 (829)
T ss_pred             CCchh-hcccccccCCCccCCCcchhhcCCCCCCCCC
Confidence            99994 5555589999999999877777777766543

>PRK10593 hypothetical protein; Provisional

Probab=93.79  E-value=0.45  Score=38.77  Aligned_cols=79  Identities=15%  Similarity=0.105  Sum_probs=56.2

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC---CCeeeeeeeEEe---CCEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH---DNIVRLLDVLTT---GRYV  115 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~---~~~~  115 (218)
                      ...-.+.||.|..+.||....  .+..+.+|..+. .   .....+..|+..++.+.-   ..++++++++..   .+..
T Consensus        15 ~~~~~~~i~~G~~~~vy~~~~--~~~~~~~k~~~~-~---~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~   88 (297)
T PRK10593         15 KLSRVECISEQPYAALWALYD--SQGNPMPLMARS-F---STPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPD   88 (297)
T ss_pred             hhheeeecCCccceeEEEEEc--CCCCEEEEEecc-c---ccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCe
Confidence            345567899999999999864  333577787432 1   122468899999988842   367888877653   3668


Q ss_pred             EEEEecCCC-Ch
Q 041487          116 YLVFEYLDL-DL  126 (218)
Q Consensus       116 ~lv~E~~~~-~L  126 (218)
                      ++|||++++ ++
T Consensus        89 ~LVmE~i~G~~~  100 (297)
T PRK10593         89 VLLLERLRGVSV  100 (297)
T ss_pred             EEEEeccCCEec
Confidence            999999997 54

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=93.44  E-value=0.59  Score=35.73  Aligned_cols=77  Identities=18%  Similarity=0.336  Sum_probs=54.7

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCC--CeeeeeeeE---EeCCEEEEEEe
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD--NIVRLLDVL---TTGRYVYLVFE  120 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~--~iv~~~~~~---~~~~~~~lv~E  120 (218)
                      ++.++.|..+.||......  ..+++|.....    .....+.+|..+++.+...  .+++++...   ......+++|+
T Consensus         2 i~~l~~G~~n~~~~v~~~~--~~~vlK~~~~~----~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~   75 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD--GRYVLKFYRPP----DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLME   75 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT--SEEEEEEESSH----HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEE
T ss_pred             CccCCCCCeeeEEEEEECC--cEEEEEEeCCC----CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEE
Confidence            5689999999999998743  69999986532    3456778888888887432  356666643   34456899999


Q ss_pred             cCCC-ChHH
Q 041487          121 YLDL-DLGS  128 (218)
Q Consensus       121 ~~~~-~L~~  128 (218)
                      ++++ .+..
T Consensus        76 ~i~g~~~~~   84 (239)
T PF01636_consen   76 YIPGRPLDD   84 (239)
T ss_dssp             EESSEEHHH
T ss_pred             Eeccccccc
Confidence            9998 5555

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=93.41  E-value=0.33  Score=37.89  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC--eeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN--IVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~--iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      ..|+.|..+.||+.    .+..+++|..+...    ......+|.++++.+....  +++++++....+...++||+++|
T Consensus         7 ~~i~~G~t~~~y~~----~~~~~VlR~~~~~~----~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G   78 (226)
T TIGR02172         7 TQTGEGGNGESYTH----KTGKWMLKLYNPGF----DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVG   78 (226)
T ss_pred             eeecCCCCcceeEe----cCCCEEEEeCCCCC----CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCC
Confidence            67899999999974    25567889875321    2345788999998885433  57778887777788899999998

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=92.56  E-value=0.02  Score=49.22  Aligned_cols=74  Identities=28%  Similarity=0.393  Sum_probs=59.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      .-..++|.....+|.|+||+|+.+....++..+|||.+.... ......+..+|...+..+.|+++++++..|..
T Consensus        45 sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn-~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   45 SREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKN-REESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hhhhccccccccccccCccccCCccccccchhhHHHHhcccc-hhhhhhhhhccccchhhhcccchhhheeceec
Confidence            345678999999999999999999988778899999986432 23345667788888999999999999877753

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=92.49  E-value=0.35  Score=38.89  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC------------------CCCc--hHHHHHHHHHHhhCCCC--
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE------------------PEGV--PSYLIAGVSLLKELEHD--  100 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~------------------~~~~--~~~~~~e~~~l~~l~h~--  100 (218)
                      ..+...||.|.-|.||.|.+ +.|.++|+|+=+....                  ++-.  .....+|.++|.++...  
T Consensus        93 e~iG~~IGvGKEsdVY~~~~-~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAID-PKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HhhccccccCccceEEEEEC-CCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            35678999999999999986 4789999998652211                  1111  23456788889988644  


Q ss_pred             CeeeeeeeEEeCCEEEEEEecCCC
Q 041487          101 NIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus       101 ~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      .+++.+    +.+..++|||++++
T Consensus       172 ~VP~P~----~~nRHaVvMe~ieG  191 (304)
T COG0478         172 KVPKPI----AWNRHAVVMEYIEG  191 (304)
T ss_pred             CCCCcc----ccccceeeeehccc
Confidence            666665    45567899999987

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=92.26  E-value=0.69  Score=36.18  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=51.5

Q ss_pred             EeeecCc-eEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEEecCCC-
Q 041487           48 KIGQGVF-GEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL-  124 (218)
Q Consensus        48 ~ig~G~~-g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~E~~~~-  124 (218)
                      .|..|.. +.||+...  .+..+.+|..+...     ...+.+|+.+++.+ .+--++++++.....+..++|||+++| 
T Consensus         5 ~~~~g~~~~~v~~~~~--~~~~~~vk~~~~~~-----~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~   77 (244)
T cd05150           5 RVTEGQSGATVYRLDG--KNPGLYLKIAPSGP-----TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGV   77 (244)
T ss_pred             ecCCCCCcCeEEEEcC--CCCcEEEEecCCCc-----ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCc
Confidence            4555555 78888864  34688889875332     23467788888887 344566777777766778999999998 


Q ss_pred             ChHH
Q 041487          125 DLGS  128 (218)
Q Consensus       125 ~L~~  128 (218)
                      ++..
T Consensus        78 ~l~~   81 (244)
T cd05150          78 PAAA   81 (244)
T ss_pred             cHhH
Confidence            5653

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=90.20  E-value=2.4  Score=32.39  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=61.0

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCC--------------CCCCchHHHHHHHHHHhhCC------CCCeeee
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN--------------EPEGVPSYLIAGVSLLKELE------HDNIVRL  105 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~--------------~~~~~~~~~~~e~~~l~~l~------h~~iv~~  105 (218)
                      ...||+|+.-.||.-   +.+...+||+.....              ..........+|+.....+.      +.+|.++
T Consensus         6 ~~~i~~G~~R~cy~H---P~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    6 SDLIAQGGERDCYQH---PDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CcccccCCCceEEEC---CCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            357899998888854   456778889887554              11223455666666544444      8899999


Q ss_pred             eeeEEeCCEEEEEEecCC-------CChHHHhhhcc
Q 041487          106 LDVLTTGRYVYLVFEYLD-------LDLGSFIRKHT  134 (218)
Q Consensus       106 ~~~~~~~~~~~lv~E~~~-------~~L~~~~~~~~  134 (218)
                      +|...++--+.+|+|.+.       .+|.+++....
T Consensus        83 ~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~  118 (199)
T PF10707_consen   83 YGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGG  118 (199)
T ss_pred             eEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCC
Confidence            999999888899999862       37888875543

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=89.97  E-value=1.8  Score=33.27  Aligned_cols=68  Identities=18%  Similarity=0.266  Sum_probs=48.6

Q ss_pred             cceeEEEEeeecCc-eEEEEEEEccCCcEEEEEEeecCC---C-------CC---------CchHHHHHHHHHHhhCC--
Q 041487           41 WNYKVVEKIGQGVF-GEVYKCLNLETGKKVAIKMINIQN---E-------PE---------GVPSYLIAGVSLLKELE--   98 (218)
Q Consensus        41 ~~~~~~~~ig~G~~-g~v~~~~~~~~~~~vaiK~~~~~~---~-------~~---------~~~~~~~~e~~~l~~l~--   98 (218)
                      .+++.++.||.|.- |.||++..  .|..+|+|.++.-.   .       ..         ...+-|..|-++..+++  
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I--~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI--DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE--CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            78999999999999 99999987  78899999943210   0       00         22345777777766664  


Q ss_pred             -CCCe--eeeeeeEE
Q 041487           99 -HDNI--VRLLDVLT  110 (218)
Q Consensus        99 -h~~i--v~~~~~~~  110 (218)
                       +.++  ++++++..
T Consensus       115 ~~e~~~Avkc~Gyl~  129 (207)
T PF13095_consen  115 GREGLWAVKCHGYLL  129 (207)
T ss_pred             cccCceEEEeeEEEE
Confidence             3344  88887763

>PLN02756 S-methyl-5-thioribose kinase

Probab=89.86  E-value=1.7  Score=37.09  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-----CCCchHHHHHHHHHHhhCC---CCCeeeeeeeEEeCCEEE
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-----PEGVPSYLIAGVSLLKELE---HDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~  116 (218)
                      ..+.||-|....||+...  .+..++||.-.....     ......+...|...|+.+.   ...+++++.++.+.  .+
T Consensus        36 ~~~eiggGn~N~VyrV~~--~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~ded~--~v  111 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVS--SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDRTM--AL  111 (418)
T ss_pred             eEEEcCCCceeeEEEEEc--CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECCCC--CE
Confidence            477899999999999886  355799998762221     1124556666677776653   24788888777644  67


Q ss_pred             EEEecCCC
Q 041487          117 LVFEYLDL  124 (218)
Q Consensus       117 lv~E~~~~  124 (218)
                      ++||++++
T Consensus       112 lvME~L~~  119 (418)
T PLN02756        112 IGMRYLEP  119 (418)
T ss_pred             EEEeecCC
Confidence            88999965

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=89.80  E-value=0.15  Score=35.59  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=31.3

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhh
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE   96 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~   96 (218)
                      .-|+.|+.|+||+|+.+ +|+.||||+.++.     ..+.+...+.+++.
T Consensus        17 ~PlasASiaQVh~a~l~-~g~~VaVKV~rP~-----i~~~i~~Dl~~l~~   60 (119)
T PF03109_consen   17 EPLASASIAQVHRARLK-DGEEVAVKVQRPG-----IEEQIEADLRILRR   60 (119)
T ss_pred             chhhheehhhheeeeec-ccchhhhhhcchH-----HHHHHHHHHHHHHH
Confidence            46999999999999864 4999999986532     23444455544443

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=85.44  E-value=0.91  Score=38.95  Aligned_cols=38  Identities=13%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             ccCcccccC-----CCCCCCcchHHHHHHHHHHHHhC-CCCCCCC
Q 041487          149 YKAPESRIR-----SSVYSTPHDVWAVGCIFAEMVSG-KPLFPCG  187 (218)
Q Consensus       149 y~aPE~~~~-----~~~~~~~~DiwSlG~~l~~l~tg-~~Pf~~~  187 (218)
                      |.+|| +..     +-.-+...|-|.||+++++++.| +.||++.
T Consensus       182 ftPPE-lQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI  225 (637)
T COG4248         182 FTPPE-LQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGI  225 (637)
T ss_pred             cCCHH-HhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcc
Confidence            88888 333     22245679999999999999985 9999876

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=85.41  E-value=1.1  Score=39.56  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=24.6

Q ss_pred             EEeeecCceEEEEEEEccCCcEEEEEEee
Q 041487           47 EKIGQGVFGEVYKCLNLETGKKVAIKMIN   75 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~~~~~vaiK~~~   75 (218)
                      +.||..+.|+|++|+.+. |+.||||+=+
T Consensus       167 ~piaaASlaQVhrA~L~~-G~~VaVKVQ~  194 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKN-GEDVAVKVQH  194 (538)
T ss_pred             chhhhcchhheEEEEecC-CCEEEEEecC
Confidence            579999999999999765 9999999865

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=85.29  E-value=6.5  Score=31.95  Aligned_cols=76  Identities=16%  Similarity=0.233  Sum_probs=47.6

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC---CCCCeeeeeeeEEeCCEEEEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---EHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .+-.+.++.|..+.+|+..  .++..+-+|+-..     .....+..|+.-|+.+   ..-.+++++.+...++..+++|
T Consensus        19 i~~~~~v~GG~i~~a~~~~--~~~~~~FvK~~~~-----~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLll   91 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLD--TDGGSYFVKVNSE-----SGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLL   91 (288)
T ss_dssp             --EEEEE--SSSSEEEEEE--TTS-EEEEEEEEG-----GGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEE
T ss_pred             eeeeEecCCCChhheEEEE--CCCccEEEEecCh-----hhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEE
Confidence            3456788999999999886  5788999998652     2234577788777776   3456888888887777779999


Q ss_pred             ecCCCC
Q 041487          120 EYLDLD  125 (218)
Q Consensus       120 E~~~~~  125 (218)
                      ||.+..
T Consensus        92 e~l~~~   97 (288)
T PF03881_consen   92 EFLEMG   97 (288)
T ss_dssp             E-----
T ss_pred             EeecCC
Confidence            998754

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=85.07  E-value=2.5  Score=35.88  Aligned_cols=77  Identities=26%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             eEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-----------------------CCCC-chHHHHHHHHHHhhCCC
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-----------------------EPEG-VPSYLIAGVSLLKELEH   99 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-----------------------~~~~-~~~~~~~e~~~l~~l~h   99 (218)
                      .+.+.|..|.-+-||.|+. .+|..+|||+++..-                       .++. ..-....|+.=|.++..
T Consensus       147 ~inGCiSTGKEANVYHat~-~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~  225 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATE-EDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNN  225 (520)
T ss_pred             ecccccccCccceeEeeec-CCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHh
Confidence            4567788899999999974 678889999997321                       1111 12233456666777776


Q ss_pred             CCeeeeeeeEEeCCEEEEEEecCC
Q 041487          100 DNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus       100 ~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      ..|+-.-.+....  .++||+|+.
T Consensus       226 aGIP~PePIlLk~--hVLVM~FlG  247 (520)
T KOG2270|consen  226 AGIPCPEPILLKN--HVLVMEFLG  247 (520)
T ss_pred             cCCCCCCceeeec--ceEeeeecc
Confidence            6654433333333  679999985

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=83.97  E-value=6.5  Score=30.34  Aligned_cols=74  Identities=18%  Similarity=0.241  Sum_probs=46.0

Q ss_pred             EEEeeecCceEEEEEEEcc-CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEEEecCC
Q 041487           46 VEKIGQGVFGEVYKCLNLE-TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLVFEYLD  123 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~E~~~  123 (218)
                      ++.|..|-.+.+|++.... .+..+++|+....  .... -...+|+.+++.+. +.-.++++..+. .   .++|||++
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~--~~~~-~d~~~E~~~~~~l~~~gl~P~v~~~~~-~---~~l~e~i~   75 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNK--TELI-IDRERELRIHKLLSKHGLAPKLYATFQ-N---GLIYEFIP   75 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCC--ccce-ecHHHHHHHHHHHHhCCCCCeEEEEeC-C---cEEEEeeC
Confidence            4667888888999987533 3578889976532  1111 12246777788774 333455554432 2   37999998


Q ss_pred             C-Ch
Q 041487          124 L-DL  126 (218)
Q Consensus       124 ~-~L  126 (218)
                      + ++
T Consensus        76 G~~l   79 (235)
T cd05157          76 GRTL   79 (235)
T ss_pred             CCcC
Confidence            8 44

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=82.69  E-value=14  Score=28.93  Aligned_cols=94  Identities=18%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchH------HHHHHHHHHhhCC---CCCee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPS------YLIAGVSLLKELE---HDNIV  103 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~------~~~~e~~~l~~l~---h~~iv  103 (218)
                      -...+...+|.+.+++.......|.+-..  ++..+++|..+..... +....      ...+.+..+.++.   -....
T Consensus        24 l~~~i~~~~~~~~kv~k~~~r~~ValIei--~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~  101 (229)
T PF06176_consen   24 LGEKILDNNYKIIKVFKNTKRNYVALIEI--DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPA  101 (229)
T ss_pred             HHHHHHhCCceEEEeecCCCccEEEEEEE--CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccc
Confidence            34567888999999999988877776654  7899999988643211 11011      1122233333332   22333


Q ss_pred             eeeeeE-----EeCCEEEEEEecCCC-ChHHH
Q 041487          104 RLLDVL-----TTGRYVYLVFEYLDL-DLGSF  129 (218)
Q Consensus       104 ~~~~~~-----~~~~~~~lv~E~~~~-~L~~~  129 (218)
                      .++.+.     .-....+++|||++| .|.++
T Consensus       102 ~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~  133 (229)
T PF06176_consen  102 DPYLAAEKKIFRYTSSYVLLMEYIEGVELNDI  133 (229)
T ss_pred             cceeeeeeeeccceeEEEEEEEEecCeecccc
Confidence            323222     223456789999998 66553

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=80.05  E-value=0.18  Score=45.11  Aligned_cols=50  Identities=18%  Similarity=0.290  Sum_probs=36.4

Q ss_pred             CcccCcccccCCCCCCCcchHHHHHHHHHHHH-hCCCCCCCCCcchHHHHHH
Q 041487          147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMV-SGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~-tg~~Pf~~~~~~~~~~~~~  197 (218)
                      ..|.|||.+.. ...+.++|++|+|+.+|.+. .|+.-+..........+..
T Consensus       173 ~~f~apE~~~~-~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~  223 (700)
T KOG2137|consen  173 LNFLAPEYLLG-TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSR  223 (700)
T ss_pred             cccccchhhcc-ccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhh
Confidence            34999996655 55788999999999999999 4777676554444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-25
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		1e-23
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-21
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-06
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-21
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-06
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-21
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-06
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-21
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-06
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		3e-21
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		2e-06
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		4e-21
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		4e-21
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		5e-21
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		5e-21
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		5e-21
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		5e-21
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		5e-21
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		5e-21
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		5e-21
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		5e-21
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		5e-21
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		5e-21
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		5e-21
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		6e-21
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		6e-21
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		6e-21
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		6e-21
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		6e-21
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		6e-21
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		6e-21
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		6e-21
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		6e-21
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		6e-21
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		6e-21
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		6e-21
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		6e-21
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		6e-21
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		6e-21
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-20
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		3e-20
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		3e-20
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		3e-20
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-20
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		3e-19
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		3e-19
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		1e-18
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		1e-17
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		6e-05
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		3e-17
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		7e-17
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		3e-08
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		1e-14
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-13
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-13
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-07
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		3e-13
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		3e-07
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		3e-13
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		3e-13
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		3e-07
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		3e-13
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		4e-13
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		4e-13
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-13
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-07
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-13
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-07
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-13
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-07
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		6e-11
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		8e-11
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		9e-11
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		1e-10
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		1e-10
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		1e-10
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		1e-10
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		1e-10
2oza_B	366	Structure Of P38alpha Complex Length = 366		1e-10
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		1e-10
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		1e-10
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		1e-10
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-10
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		2e-10
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		2e-10
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		2e-10
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-10
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-10
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		2e-10
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-10
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		2e-10
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-10
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		2e-10
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		2e-10
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		2e-10
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-10
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		2e-10
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		2e-10
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		2e-10
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-10
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		2e-10
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-10
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-10
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		2e-10
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-10
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		2e-10
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-10
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		2e-10
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		2e-10
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		2e-10
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-10
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		2e-10
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-10
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-10
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-10
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		2e-10
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		2e-10
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-10
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		2e-10
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		2e-10
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-10
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-10
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		3e-10
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		2e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		5e-10
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		3e-07
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		8e-10
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		1e-09
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		1e-09
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-09
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		2e-09
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		2e-09
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		5e-09
4exu_A	371	Mapk13, Inactive Form Length = 371		6e-09
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		2e-08
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-08
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-08
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		3e-08
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		3e-08
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-08
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-08
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		3e-08
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		3e-08
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		4e-08
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		4e-08
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-08
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		5e-08
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		8e-08
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		8e-08
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-07
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		1e-07
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		1e-07
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		1e-07
3kk8_A	284	Camkii Substrate Complex A Length = 284		2e-07
3kk9_A	282	Camkii Substrate Complex B Length = 282		2e-07
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		2e-07
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		2e-07
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		2e-07
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		3e-07
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		3e-07
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		4e-07
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		3e-05
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		5e-07
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		7e-07
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		8e-07
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		8e-07
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		8e-07
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		8e-07
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		8e-07
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		8e-07
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		8e-07
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		9e-07
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		9e-07
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		9e-07
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		9e-07
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		9e-07
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		9e-07
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		9e-07
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		9e-07
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		9e-07
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		9e-07
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		9e-07
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		9e-07
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		9e-07
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		9e-07
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		9e-07
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		9e-07
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		9e-07
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		9e-07
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		9e-07
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-06
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-06
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		1e-06
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		1e-06
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		1e-06
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		1e-06
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		2e-06
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		2e-06
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-06
3rgf_A	405	Crystal Structure Of Human Cdk8CYCC Length = 405		2e-06
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		2e-06
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		2e-06
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		2e-06
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		2e-06
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		3e-06
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		3e-06
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		3e-06
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		3e-06
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		3e-06
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		3e-06
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		3e-06
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		3e-06
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		3e-06
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		3e-06
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		3e-06
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		4e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		4e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		4e-06
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		4e-06
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		4e-06
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		5e-06
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		5e-06
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		5e-06
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		5e-06
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		5e-06
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		5e-06
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		6e-06
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		6e-06
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		6e-06
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		6e-06
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-06
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		8e-06
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		9e-06
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		1e-05
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		1e-05
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		1e-05
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		1e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		1e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		1e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		1e-05
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		2e-05
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		2e-04
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-05
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		2e-05
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		2e-04
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		2e-05
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		2e-05
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		2e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-05
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-05
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		2e-05
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		2e-05
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		2e-05
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		2e-05
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		3e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		3e-05
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		3e-05
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		4e-04
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		3e-05
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		3e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		3e-05
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		3e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		3e-05
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-05
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		3e-05
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		3e-05
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		3e-05
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		2e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		3e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		3e-05
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		3e-05
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		3e-05
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		3e-05
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		3e-05
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		3e-05
3soa_A	444	Full-Length Human Camkii Length = 444		3e-05
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		3e-05
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-05
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		4e-05
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		4e-05
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		4e-05
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		4e-05
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		4e-05
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		4e-05
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		4e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-05
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		4e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-05
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		4e-05
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		4e-05
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		4e-05
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		5e-05
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		5e-05
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		5e-05
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		5e-05
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		5e-05
2pl0_A	289	Lck Bound To Imatinib Length = 289		5e-05
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		5e-05
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		5e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		5e-05
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		5e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		5e-05
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		5e-05
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		5e-05
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		5e-05
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		5e-05
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-05
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		5e-05
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		5e-05
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		5e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		5e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		5e-05
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		5e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		5e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		5e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		6e-05
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		6e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		6e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		6e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		6e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		6e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		6e-05
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		6e-05
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		6e-05
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		6e-05
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		6e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		6e-05
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		6e-05
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		6e-05
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		6e-05
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		6e-05
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		6e-05
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		6e-05
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		6e-05
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		6e-05
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		6e-05
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		6e-05
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		7e-05
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		7e-05
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		7e-05
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		7e-05
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		7e-05
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		7e-05
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		7e-05
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		7e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		7e-05
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		7e-05
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		7e-05
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		7e-05
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		7e-05
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		7e-05
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		8e-05
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		8e-05
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		8e-05
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		8e-05
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		8e-05
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		8e-05
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		8e-05
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		1e-04
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		1e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		1e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		1e-04
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-04
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		1e-04
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		1e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-04
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		1e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-04
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-04
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-04
3a7f_A	303	Human Mst3 Kinase Length = 303		1e-04
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		2e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-04
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		2e-04
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		2e-04
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		2e-04
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		2e-04
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		2e-04
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-04
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		2e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-04
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		2e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		3e-04
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		3e-04
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		3e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		3e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		3e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		3e-04
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		3e-04
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		3e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		4e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		4e-04
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		4e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		4e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		4e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		4e-04
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		4e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		4e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		4e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		4e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		4e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		4e-04
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		4e-04
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		4e-04
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-04
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		4e-04
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		5e-04
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		5e-04
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		5e-04
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		5e-04
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		5e-04
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		5e-04
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		5e-04
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		5e-04
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		5e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		5e-04
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		5e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		6e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		6e-04
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		6e-04
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		6e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		6e-04
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		6e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		6e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		6e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		6e-04
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		6e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		6e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		6e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		6e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		6e-04
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		6e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		6e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		6e-04
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		6e-04
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		7e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		8e-04
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		9e-04

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 102/215 (47%), Gaps = 59/215 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLG---------------------------SFIRKHT 134
           IV+LLDV+ T   +YLVFE+L  DL                            SF   H 
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFCHSHR 123
Query: 135 I--TSIRPH-----------------IKEVGSP------------YKAPESRIRSSVYST 163
           +    ++P                   +  G P            Y+APE  +    YST
Sbjct: 124 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYST 183
Query: 164 PHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
             D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 184 AVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 218

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 98/215 (45%), Gaps = 59/215 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI----------------------- 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I                       
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR 123
Query: 139 ------RPH-----------------IKEVGSPYKAPESRIRSSVYSTPH---------- 165
                 +P                   +  G P +     + +  Y  P           
Sbjct: 124 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYST 183
Query: 166 --DVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
             D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 184 AVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 218

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 66/97 (68%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L +DL  F+    +T I
Sbjct: 66  IVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGI 102

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 171 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 220

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 66/97 (68%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L +DL  F+    +T I
Sbjct: 67  IVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGI 103

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 172 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 221

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 66/97 (68%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L +DL  F+    +T I
Sbjct: 67  IVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGI 103

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 172 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 221

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 66/97 (68%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L +DL  F+    +T I
Sbjct: 65  IVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGI 101

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 170 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 219

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 66/97 (68%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE++D DL  F+    +T I
Sbjct: 67  IVKLLDVIHTENKLYLVFEHVDQDLKKFMDASALTGI 103

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    YST  D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 172 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 221

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 66/97 (68%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL +F+    +T I
Sbjct: 67  IVKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGI 103

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 59/213 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EKIG+G +G VYK  N   G+  A+K I ++ E EG+PS  I  +S+LKEL+H NI
Sbjct: 4   YHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFI----------------------------RKHT 134
           V+L DV+ T + + LVFE+LD DL   +                            R+  
Sbjct: 63  VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL 122
Query: 135 ITSIRPH-----------------IKEVGSPYKAPESRIRSSVYSTPH------------ 165
              ++P                   +  G P +     I +  Y  P             
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTI 182
Query: 166 DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           D+W+VGCIFAEMV+G PLFP   + D L  I R
Sbjct: 183 DIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR 215

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 66  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 102

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 100

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 100

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 65  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 101

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 67  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 103

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 66  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 102

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 66  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 102

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 8   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 67
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 68  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 104

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 65  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 101

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 100

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 11  NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 70
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 71  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 107

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKDFMDASALTGI 100

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 99

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 100

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 99

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 59/213 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EKIG+G +G VYK  N   G+  A+K I ++ E EG+PS  I  +S+LKEL+H NI
Sbjct: 4   YHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFI----------------------------RKHT 134
           V+L DV+ T + + LVFE+LD DL   +                            R+  
Sbjct: 63  VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL 122
Query: 135 ITSIRPH-----------------IKEVGSPYKAPESRIRSSVYSTPH------------ 165
              ++P                   +  G P +     + +  Y  P             
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTI 182
Query: 166 DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           D+W+VGCIFAEMV+G PLFP   + D L  I R
Sbjct: 183 DIWSVGCIFAEMVNGAPLFPGVSEADQLMRIFR 215

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 100

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 99

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 100

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 65  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 101

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 65  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 101

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 99

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 8   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 67
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 68  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 104

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 11  NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 70
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 71  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 107

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 67  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 103

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 59/213 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +EKIG+G +G VYK  N   G+  A+K I ++ E EG+PS  I  +S+LKEL+H NI
Sbjct: 4   YHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFI----------------------------RKHT 134
           V+L DV+ T + + LVFE+LD DL   +                            R+  
Sbjct: 63  VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL 122
Query: 135 ITSIRPH-----------------IKEVGSPYKAPESRIRSSVYSTPH------------ 165
              ++P                   +  G P +     + +  Y  P             
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTI 182
Query: 166 DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           D+W+VGCIFAEMV+G PLFP   + D L  I R
Sbjct: 183 DIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR 215

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE++  DL +F+    +T I
Sbjct: 63  IVKLLDVIHTENKLYLVFEHVHQDLKTFMDASALTGI 99

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 64/97 (65%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+  I +  E EGVPS  I  +SLLKEL H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 100

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 64/97 (65%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+  I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T I
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGI 99

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 58/201 (28%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +EK+G+G +G VYK  + + G+ VA+K I +  E EG+PS  I  +SLLKEL H N
Sbjct: 22  KYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN 80
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFI--------------------------RKHTI 135
           IV L+DV+ + R + LVFE+++ DL   +                           +H I
Sbjct: 81  IVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRI 140
Query: 136 --TSIRPH-----------------IKEVGSPYKAPESRIRSSVYSTPH----------- 165
               ++P                   +  G P ++    + +  Y  P            
Sbjct: 141 LHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTS 200
Query: 166 -DVWAVGCIFAEMVSGKPLFP 185
            D+W++GCIFAEM++GKPLFP
Sbjct: 201 VDIWSIGCIFAEMITGKPLFP 221

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 58/201 (28%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +EK+G+G +G VYK  + + G+ VA+K I +  E EG+PS  I  +SLLKEL H N
Sbjct: 22  KYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN 80
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFI--------------------------RKHTI 135
           IV L+DV+ + R + LVFE+++ DL   +                           +H I
Sbjct: 81  IVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRI 140
Query: 136 --TSIRPH-----------------IKEVGSPYKAPESRIRSSVYSTPH----------- 165
               ++P                   +  G P ++    + +  Y  P            
Sbjct: 141 LHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTS 200
Query: 166 -DVWAVGCIFAEMVSGKPLFP 185
            D+W++GCIFAEM++GKPLFP
Sbjct: 201 VDIWSIGCIFAEMITGKPLFP 221

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 99/213 (46%), Gaps = 59/213 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  ++K+G+G +  VYK  +  T   VA+K I +++E EG P   I  VSLLK+L+H NI
Sbjct: 4   YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 62
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDL-------GSFIRKHTIT------------------- 136
           V L D++ T + + LVFEYLD DL       G+ I  H +                    
Sbjct: 63  VTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVL 122
Query: 137 --SIRPH---IKEVGS--------------P------------YKAPESRIRSSVYSTPH 165
              ++P    I E G               P            Y+ P+  + S+ YST  
Sbjct: 123 HRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQI 182
Query: 166 DVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVR 197
           D+W VGCIF EM +G+PLFP    ++ L  I R
Sbjct: 183 DMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFR 215

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +EKIG+G +G V+K  N ET + VA+K + + ++ EGVPS  +  + LLKEL+H NI
Sbjct: 4   YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI 63
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFI----------------------------RKHT 134
           VRL DVL + + + LVFE+ D DL  +                             R   
Sbjct: 64  VRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVL 123
Query: 135 ITSIRPH-----------------IKEVGSPYKAPESRIRSSVYSTPH------------ 165
              ++P                   +  G P +   + + +  Y  P             
Sbjct: 124 HRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSI 183
Query: 166 DVWAVGCIFAEMV-SGKPLFPCGK-KDHLSLIVR 197
           D+W+ GCIFAE+  +G+PLFP     D L  I R
Sbjct: 184 DMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFR 217

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +EKIG+G +G V+K  N ET + VA+K + + ++ EGVPS  +  + LLKEL+H NI
Sbjct: 4   YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI 63
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFI----------------------------RKHT 134
           VRL DVL + + + LVFE+ D DL  +                             R   
Sbjct: 64  VRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVL 123
Query: 135 ITSIRPH-----------------IKEVGSPYKAPESRIRSSVYSTPH------------ 165
              ++P                   +  G P +   + + +  Y  P             
Sbjct: 124 HRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSI 183
Query: 166 DVWAVGCIFAEMV-SGKPLFPCGK-KDHLSLIVR 197
           D+W+ GCIFAE+  + +PLFP     D L  I R
Sbjct: 184 DMWSAGCIFAELANAARPLFPGNDVDDQLKRIFR 217

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 64/97 (65%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + K+G+G +GEVYK ++  T + VAIK I +++E EGVP   I  VSLLKEL+H NI
Sbjct: 36  YRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNI 95
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR 139
           + L  V+     ++L+FEY + DL  ++ K+   S+R
Sbjct: 96  IELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVSMR 132

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+ PE  + S  YST  D+W++ CI+AEM+   PLFP
Sbjct: 203 YRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFP 239

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 58/206 (28%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ + KIG+G +G V+KC N +TG+ VAIK      +   +    +  + +LK+L+H N
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPN 63
Query: 102 IVRLLDVLTTGRYVYLVFEYLD--------------------------LDLGSFIRKHTI 135
           +V LL+V    R ++LVFEY D                          L   +F  KH  
Sbjct: 64  LVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNC 123
Query: 136 --TSIRP----------------------------HIKEVGSPY-KAPESRIRSSVYSTP 164
               ++P                            +  EV + + ++PE  +  + Y  P
Sbjct: 124 IHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPP 183
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKKD 190
            DVWA+GC+FAE++SG PL+P GK D
Sbjct: 184 VDVWAIGCVFAELLSGVPLWP-GKSD 208

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           +K +EK+G G +  VYK LN  TG  VA+K + + +E EG PS  I  +SL+KEL+H+NI
Sbjct: 7   FKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSE-EGTPSTAIREISLMKELKHENI 65
Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTI 135
           VRL DV+ T   + LVFE++D DL  ++   T+
Sbjct: 66  VRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTV 98

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP-CGKKDHLSLI 195
           Y+AP+  + S  YST  D+W+ GCI AEM++GKPLFP    ++ L LI
Sbjct: 174 YRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLI 221

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 89/210 (42%), Gaps = 62/210 (29%)
Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
           + MEK     Y+ +  +G+G +G V KC N +TG+ VAIK     ++ + V    +  + 
Sbjct: 22  QSMEK-----YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIK 76
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLD-------------LDLG------------ 127
           LLK+L H+N+V LL+V    +  YLVFE++D             LD              
Sbjct: 77  LLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIING 136
Query: 128 -SFIRKHTI--TSIRPH-----------------IKEVGSP------------YKAPESR 155
             F   H I    I+P                   + + +P            Y+APE  
Sbjct: 137 IGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELL 196
Query: 156 IRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           +    Y    DVWA+GC+  EM  G+PLFP
Sbjct: 197 VGDVKYGKAVDVWAIGCLVTEMFMGEPLFP 226

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 62/226 (27%)
Query: 37  KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE---GVPSYLIAGVSL 93
           K +   Y+ ++ +G+G F  VYK  +  T + VAIK I + +  E   G+    +  + L
Sbjct: 6   KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKL 65
Query: 94  LKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHI----------- 142
           L+EL H NI+ LLD       + LVF++++ DL   I+ +++     HI           
Sbjct: 66  LQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGL 125
Query: 143 ----------------------------------KEVGSP------------YKAPESRI 156
                                             K  GSP            Y+APE   
Sbjct: 126 EYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWYRAPELLF 185
Query: 157 RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL 202
            + +Y    D+WAVGCI AE++   P  P G  D L  + R F  L
Sbjct: 186 GARMYGVGVDMWAVGCILAELLLRVPFLP-GDSD-LDQLTRIFETL 229

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 9/102 (8%)
Query: 40  DWNYKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAGVSLLKEL- 97
           D  Y+ V +IG+G +G+V+K  +L+ G + VA+K + +Q   EG+P   I  V++L+ L 
Sbjct: 10  DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE 69
Query: 98  --EHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
             EH N+VRL DV T  R      + LVFE++D DL +++ K
Sbjct: 70  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDK 111

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+APE  ++SS Y+TP D+W+VGCIFAEM   KPLF
Sbjct: 185 YRAPEVLLQSS-YATPVDLWSVGCIFAEMFRRKPLF 219

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 9/102 (8%)
Query: 40  DWNYKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAGVSLLKEL- 97
           D  Y+ V +IG+G +G+V+K  +L+ G + VA+K + +Q   EG+P   I  V++L+ L 
Sbjct: 10  DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE 69
Query: 98  --EHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
             EH N+VRL DV T  R      + LVFE++D DL +++ K
Sbjct: 70  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDK 111

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+APE  ++SS Y+TP D+W+VGCIFAEM   KPLF
Sbjct: 185 YRAPEVLLQSS-YATPVDLWSVGCIFAEMFRRKPLF 219

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 12/109 (11%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + KIGQG FGEV+K  + +TG+KVA+K + ++NE EG P   +  + +L+ L+H+N+
Sbjct: 20  YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 79
Query: 103 VRLLDVLTTGR--------YVYLVFEYLDLDLGSFIR----KHTITSIR 139
           V L+++  T           +YLVF++ + DL   +     K T++ I+
Sbjct: 80  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIK 128

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 9/102 (8%)
Query: 40  DWNYKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAGVSLLKEL- 97
           D  Y+ V +IG+G +G+V+K  +L+ G + VA+K + +Q   EG+P   I  V++L+ L 
Sbjct: 10  DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE 69
Query: 98  --EHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
             EH N+VRL DV T  R      + LVFE++D DL +++ K
Sbjct: 70  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDK 111

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+APE  ++SS Y+TP D+W+VGCIFAEM   KPLF
Sbjct: 185 YRAPEVLLQSS-YATPVDLWSVGCIFAEMFRRKPLF 219

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 12/109 (11%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + KIGQG FGEV+K  + +TG+KVA+K + ++NE EG P   +  + +L+ L+H+N+
Sbjct: 19  YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 78
Query: 103 VRLLDVLTTGR--------YVYLVFEYLDLDLGSFIR----KHTITSIR 139
           V L+++  T           +YLVF++ + DL   +     K T++ I+
Sbjct: 79  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIK 127

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 12/109 (11%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + KIGQG FGEV+K  + +TG+KVA+K + ++NE EG P   +  + +L+ L+H+N+
Sbjct: 20  YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 79
Query: 103 VRLLDVLTT--------GRYVYLVFEYLDLDLGSFIR----KHTITSIR 139
           V L+++  T           +YLVF++ + DL   +     K T++ I+
Sbjct: 80  VNLIEICRTKASPYNRCKASIYLVFDFCEHDLAGLLSNVLVKFTLSEIK 128

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 12/109 (11%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ + KIGQG FGEV+K  + +TG+KVA+K + ++NE EG P   +  + +L+ L+H+N+
Sbjct: 20  YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 79
Query: 103 VRLLDVLTTGR--------YVYLVFEYLDLDLGSFIR----KHTITSIR 139
           V L+++  T           +YLVF++ + DL   +     K T++ I+
Sbjct: 80  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIK 128

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---E 98
            Y+ V +IG G +G VYK  +  +G  VA+K + + N  EG+P   +  V+LL+ L   E
Sbjct: 5   RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFE 64
Query: 99  HDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
           H N+VRL+DV  T R      V LVFE++D DL +++ K
Sbjct: 65  HPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDK 103

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  ++S+ Y+TP D+W+VGCIFAEM   KPLF CG  +
Sbjct: 177 YRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLF-CGNSE 216

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---E 98
            Y+ V +IG G +G VYK  +  +G  VA+K + + N  EG+P   +  V+LL+ L   E
Sbjct: 5   RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFE 64
Query: 99  HDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
           H N+VRL+DV  T R      V LVFE++D DL +++ K
Sbjct: 65  HPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDK 103

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  ++S+ Y+TP D+W+VGCIFAEM   KPLF CG  +
Sbjct: 177 YRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLF-CGNSE 216

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---E 98
            Y+ V +IG G +G VYK  +  +G  VA+K + + N  EG+P   +  V+LL+ L   E
Sbjct: 5   RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFE 64
Query: 99  HDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
           H N+VRL+DV  T R      V LVFE++D DL +++ K
Sbjct: 65  HPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDK 103

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  ++S+ Y+TP D+W+VGCIFAEM   KPLF CG  +
Sbjct: 177 YRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLF-CGNSE 216

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  + +  Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNAMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKSQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDSELKILDFGLCRHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 79
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 80  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 139
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 140 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 199
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 200 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 233

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 44  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 103
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 104 IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 163
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 164 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 223
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 224 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 257

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFYLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 89
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 90  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 149
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 150 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 209
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 210 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 243

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 34  YQNLAPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 93
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 94  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 153
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 154 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 213
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 214 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 247

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  IG G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 29  YQNLSPIGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 86
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 87  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 146
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 147 HSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 206
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 207 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 242

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 43  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 102
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 103 IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 162
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 163 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 222
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 223 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 256

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 29  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 86
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 87  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 146
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 147 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 206
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 207 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 242

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDAGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 88
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 89  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 148
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 149 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYN 208
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 209 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 244

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 77
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 78  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 137
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 138 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 197
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 198 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 233

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 89
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 90  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 149
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 150 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 209
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 210 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 243

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 88
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 89  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 148
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 149 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 208
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 209 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 244

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 83
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 84  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 143
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 144 ADIIHRDLKPSNLAVNEDCELKILGFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 203
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 204 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 88
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 89  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 148
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 149 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYN 208
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 209 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 244

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 36  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 95
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 96  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 155
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 156 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 215
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 216 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 249

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 36  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSKPFQSIIHAKRTYRELRLLKHMKHENV 95
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 96  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 155
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 156 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 215
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 216 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 249

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 36  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 95
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 96  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 155
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 156 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 215
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 216 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 249

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 87
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 88  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 147
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 148 HSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 207
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 208 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 243

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 21  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 80
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 81  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 140
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 141 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 200
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 201 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 234

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 84  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 143
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 144 HSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 203
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 204 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 239

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 22  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 81
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 82  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 141
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 142 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 201
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 235

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 47  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 106
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 107 IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 166
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 167 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 226
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 227 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 260

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 84  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 143
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 144 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 203
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 204 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 239

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDRGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 44  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 103
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 104 IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 163
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 164 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 223
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 224 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 257

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDGGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 29  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 86
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 87  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 146
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 147 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 206
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 207 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 242

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 23  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 80
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 81  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 140
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 141 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 200
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 201 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 236

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 83
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 84  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 143
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 144 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 203
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 204 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 35  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 94
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 95  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 154
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 155 ADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 214
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 215 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 248

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 24  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 82  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 141
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDYGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 201
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 202 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 21  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 80
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 81  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 140
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 141 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 200
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 201 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 234

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 79
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 80  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCAKLTDDHVQFLIYQILRGLKYIHS 139
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 140 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 199
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 200 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 233

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 29  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 86
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 87  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 146
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 147 HSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN 206
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 207 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 242

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 30  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 89
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 90  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 149
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 150 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 209
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 210 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 243

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 35  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 94
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 95  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 154
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 155 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 214
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 215 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 248

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 88
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 89  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 148
Query: 137 --------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYS 162
                    ++P                    H  +  + Y      +APE  +    Y+
Sbjct: 149 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYN 208
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 209 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 244

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 85
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 86  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 145
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 146 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 205
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 206 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 239

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 26  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 85
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 86  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 145
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 146 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 205
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 206 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 239

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 59/214 (27%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 43  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 102
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T  R       VYLV   +  DL + ++   +T                    
Sbjct: 103 IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 162
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 163 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQT 222
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
            D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 223 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 256

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 7/101 (6%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI--NIQNEPEGVPSYLIAGVSLLKELE-H 99
           Y++V+K+G+G +G V+K ++  TG+ VA+K I    QN  +   ++    + +L EL  H
Sbjct: 11  YELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTF--REIMILTELSGH 68
Query: 100 DNIVRLLDVL--TTGRYVYLVFEYLDLDLGSFIRKHTITSI 138
           +NIV LL+VL     R VYLVF+Y++ DL + IR + +  +
Sbjct: 69  ENIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRANILEPV 109

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S+ Y+   D+W++GCI  E++ GKP+FP
Sbjct: 196 YRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP 232

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 11/102 (10%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN---EPEGVPSYLIAGVSLLKEL- 97
            Y+ V +IG G +G VYK  +  +G  VA+K + + N      G+P   +  V+LL+ L 
Sbjct: 10  RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLE 69
Query: 98  --EHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
             EH N+VRL+DV  T R      V LVFE++D DL +++ K
Sbjct: 70  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDK 111

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  ++S+ Y+TP D+W+VGCIFAEM   KPLF CG  +
Sbjct: 185 YRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLF-CGNSE 224

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 57/197 (28%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ NI
Sbjct: 23  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI 80
Query: 103 VRLLDVLTTGRYVYLVFEYL---------------DLDLGSFIRK--------HTITSIR 139
           V  LD    G  +++V EYL               +  + +  R+        H+   I 
Sbjct: 81  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIH 140
Query: 140 PHIKE-------VGS---------PYKAPESRIRSSVYSTPH----------------DV 167
            +IK         GS             PE   RS++  TP+                D+
Sbjct: 141 RNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDI 200
Query: 168 WAVGCIFAEMVSGKPLF 184
           W++G +  EM+ G+P +
Sbjct: 201 WSLGIMAIEMIEGEPPY 217

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 57/197 (28%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ NI
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI 79
Query: 103 VRLLDVLTTGRYVYLVFEYL---------------DLDLGSFIRK--------HTITSIR 139
           V  LD    G  +++V EYL               +  + +  R+        H+   I 
Sbjct: 80  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIH 139
Query: 140 PHIKE-------VGS---------PYKAPESRIRSSVYSTPH----------------DV 167
             IK         GS             PE   RS++  TP+                D+
Sbjct: 140 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDI 199
Query: 168 WAVGCIFAEMVSGKPLF 184
           W++G +  EM+ G+P +
Sbjct: 200 WSLGIMAIEMIEGEPPY 216

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 63/216 (29%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+      +Y    + LLK ++H+
Sbjct: 47  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHE 104
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT------------------ 136
           N++ LLDV T  R       VYLV   +  DL + ++   +T                  
Sbjct: 105 NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYI 164
Query: 137 --------SIRP--------------------HIKEVGSPYKA------PESRIRSSVYS 162
                    ++P                    H  +    Y A      PE  +    Y+
Sbjct: 165 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMXGYVATRWYRAPEIMLNWMHYN 224
Query: 163 TPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
              D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 225 QTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 260

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ NI
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI 79
Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  LD    G  +++V EYL
Sbjct: 80  VNYLDSYLVGDELWVVMEYL 99

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ NI
Sbjct: 23  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI 80
Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  LD    G  +++V EYL
Sbjct: 81  VNYLDSYLVGDELWVVMEYL 100

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ NI
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI 79
Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  LD    G  +++V EYL
Sbjct: 80  VNYLDSYLVGDELWVVMEYL 99

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 63/208 (30%)
Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDV 108
           +G G +G V   ++  +G+KVAIK ++   + E         + LLK ++H+N++ LLDV
Sbjct: 32  VGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDV 91
Query: 109 LTTG-------------------------------RYVYLVFEYL--------------D 123
            T                                 +  YLV++ L              D
Sbjct: 92  FTPASSLRNFYDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRD 151
Query: 124 LDLGSF--------------IRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWA 169
           L  G+               + +H    +  ++  V   Y+APE  +    Y+   D+W+
Sbjct: 152 LKPGNLAVNEDCELKILDFGLARHADAEMTGYV--VTRWYRAPEVILSWMHYNQTVDIWS 209
Query: 170 VGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
           VGCI AEM++GK LF    KD+L  + +
Sbjct: 210 VGCIMAEMLTGKTLFKG--KDYLDQLTQ 235

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 63/208 (30%)
Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDV 108
           +G G +G V   ++  +G+KVAIK ++   + E         + LLK ++H+N++ LLDV
Sbjct: 50  VGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDV 109
Query: 109 LTTG-------------------------------RYVYLVFEYL--------------D 123
            T                                 +  YLV++ L              D
Sbjct: 110 FTPASSLRNFYDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRD 169
Query: 124 LDLGSF--------------IRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWA 169
           L  G+               + +H    +  ++  V   Y+APE  +    Y+   D+W+
Sbjct: 170 LKPGNLAVNEDCELKILDFGLARHADAEMTGYV--VTRWYRAPEVILSWMHYNQTVDIWS 227
Query: 170 VGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
           VGCI AEM++GK LF    KD+L  + +
Sbjct: 228 VGCIMAEMLTGKTLFKG--KDYLDQLTQ 253

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ---NEPEGVPSYLIAGVSLLKELEH 99
           Y++ E IG+G F  V +C+N ETG++ A+K++++    + P      L    S+   L+H
Sbjct: 26  YELCEVIGKGAFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH 85
Query: 100 DNIVRLLDVLTTGRYVYLVFEYLD 123
            +IV LL+  ++   +Y+VFE++D
Sbjct: 86  PHIVELLETYSSDGMLYMVFEFMD 109

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 60/209 (28%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    ++++G K+A+K ++   +           + LLK ++H+N+
Sbjct: 53  YQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 112
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTIT-------------------- 136
           + LLDV T          VYLV   +  DL + ++   +T                    
Sbjct: 113 IGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHS 172
Query: 137 ------SIRP--------------------HIKEVGSPY------KAPESRIRSSVYSTP 164
                  ++P                    H  +  + Y      +APE  +    Y+  
Sbjct: 173 ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMT 232
Query: 165 HDVWAVGCIFAEMVSGKPLFPCGKKDHLS 193
            D+W+VGCI AE+++G+ LFP    DH++
Sbjct: 233 VDIWSVGCIMAELLTGRTLFP--GTDHIN 259

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TGK+VA+K+I+           L   V ++K L H N
Sbjct: 8   NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 67
Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YLV EY
Sbjct: 68  IVKLFEVIETEKTLYLVMEY 87

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TGK+VA+K+I+           L   V ++K L H N
Sbjct: 15  NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YLV EY
Sbjct: 75  IVKLFEVIETEKTLYLVMEY 94

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y +V  +G+G FGEV KC +  T ++ A+K+IN  +      S ++  V LLK+L+H NI
Sbjct: 24  YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI 83
Query: 103 VRLLDVLTTGRYVYLVFE 120
           ++L ++L      Y+V E
Sbjct: 84  MKLFEILEDSSSFYIVGE 101

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TGK+VA+K+I+           L   V ++K L H N
Sbjct: 15  NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YLV EY
Sbjct: 75  IVKLFEVIETEKTLYLVMEY 94

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TGK+VA+K+I+           L   V ++K L H N
Sbjct: 15  NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YLV EY
Sbjct: 75  IVKLFEVIETEKTLYLVMEY 94

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y +V  +G+G FGEV KC +  T ++ A+K+IN  +      S ++  V LLK+L+H NI
Sbjct: 24  YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI 83
Query: 103 VRLLDVLTTGRYVYLVFE 120
           ++L ++L      Y+V E
Sbjct: 84  MKLFEILEDSSSFYIVGE 101

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y +V  +G+G FGEV KC +  T ++ A+K+IN  +      S ++  V LLK+L+H NI
Sbjct: 24  YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI 83
Query: 103 VRLLDVLTTGRYVYLVFE 120
           ++L ++L      Y+V E
Sbjct: 84  MKLFEILEDSSSFYIVGE 101

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ---NEPEGVPSYLIAGVSLLKELEH 99
           Y++ E IG+G F  V +C+N ETG++ A+K++++    + P      L    S+   L+H
Sbjct: 26  YELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH 85
Query: 100 DNIVRLLDVLTTGRYVYLVFEYLD 123
            +IV LL+  ++   +Y+VFE++D
Sbjct: 86  PHIVELLETYSSDGMLYMVFEFMD 109

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ---NEPEGVPSYLIAGVSLLKELEH 99
           Y++ E IG+G F  V +C+N ETG++ A+K++++    + P      L    S+   L+H
Sbjct: 28  YELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH 87
Query: 100 DNIVRLLDVLTTGRYVYLVFEYLD 123
            +IV LL+  ++   +Y+VFE++D
Sbjct: 88  PHIVELLETYSSDGMLYMVFEFMD 111

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TGK+VA+++I+           L   V ++K L H N
Sbjct: 15  NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YLV EY
Sbjct: 75  IVKLFEVIETEKTLYLVMEY 94

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TGK+VA+++I+           L   V ++K L H N
Sbjct: 15  NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YLV EY
Sbjct: 75  IVKLFEVIETEKTLYLVMEY 94

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN-IQNEPEGVPSYLIAGVSLLKELEHD 100
           NY++++ IG+G F +V    ++ TG++VAIK+I+  Q  P  +   L   V ++K L H 
Sbjct: 13  NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQK-LFREVRIMKILNHP 71
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYK 150
           NIV+L +V+ T + +YL+ EY     G  +  + +   R   KE  S ++
Sbjct: 72  NIVKLFEVIETEKTLYLIMEYAS---GGEVFDYLVAHGRMKEKEARSKFR 118

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN-IQNEPEGVPSYLIAGVSLLKELEHD 100
           NY++++ IG+G F +V    ++ TG++VAIK+I+  Q  P  +   L   V ++K L H 
Sbjct: 16  NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQK-LFREVRIMKILNHP 74
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYK 150
           NIV+L +V+ T + +YL+ EY     G  +  + +   R   KE  S ++
Sbjct: 75  NIVKLFEVIETEKTLYLIMEYAS---GGEVFDYLVAHGRMKEKEARSKFR 121

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TGK+VA+K+I+           L   V + K L H N
Sbjct: 15  NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIXKVLNHPN 74
Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YLV EY
Sbjct: 75  IVKLFEVIETEKTLYLVXEY 94

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 59/204 (28%)
Query: 41  WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           + Y+V++ IG+G FG+V K  + +  + VA+KM+  +       +  I  +  L++ + D
Sbjct: 97  YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKD 156
Query: 101 ---NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK---------------HTI------- 135
              N++ +L+  T   ++ + FE L ++L   I+K               H+I       
Sbjct: 157 NTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDAL 216
Query: 136 -------TSIRPH---IKEVGSP-----------------YKAPESR-------IRSSVY 161
                    ++P    +K+ G                   Y   +SR       I  + Y
Sbjct: 217 HKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARY 276
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
             P D+W++GCI AE+++G PL P
Sbjct: 277 GMPIDMWSLGCILAELLTGYPLLP 300

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 59/204 (28%)
Query: 41  WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           + Y+V++ IG+G FG+V K  + +  + VA+KM+  +       +  I  +  L++ + D
Sbjct: 97  YRYEVLKVIGKGXFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKD 156
Query: 101 ---NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK---------------HTI------- 135
              N++ +L+  T   ++ + FE L ++L   I+K               H+I       
Sbjct: 157 NTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDAL 216
Query: 136 -------TSIRPH---IKEVGSP-----------------YKAPESR-------IRSSVY 161
                    ++P    +K+ G                   Y   +SR       I  + Y
Sbjct: 217 HKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGARY 276
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
             P D+W++GCI AE+++G PL P
Sbjct: 277 GMPIDMWSLGCILAELLTGYPLLP 300

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 59/204 (28%)
Query: 41  WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           + Y+V++ IG+G FG+V K  + +  + VA+KM+  +       +  I  +  L++ + D
Sbjct: 97  YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKD 156
Query: 101 ---NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK---------------HTI------- 135
              N++ +L+  T   ++ + FE L ++L   I+K               H+I       
Sbjct: 157 NTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDAL 216
Query: 136 -------TSIRPH---IKEVGSP-----------------YKAPESR-------IRSSVY 161
                    ++P    +K+ G                   Y   +SR       I  + Y
Sbjct: 217 HKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARY 276
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
             P D+W++GCI AE+++G PL P
Sbjct: 277 GMPIDMWSLGCILAELLTGYPLLP 300

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY V E++G+G F  V +C++  TG + A K+IN +         L     + ++L+H N
Sbjct: 7   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D +    + YLVF+
Sbjct: 67  IVRLHDSIQEESFHYLVFD 85

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY V E++G+G F  V +C++  TG + A K+IN +         L     + ++L+H N
Sbjct: 6   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN 65
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D +    + YLVF+
Sbjct: 66  IVRLHDSIQEESFHYLVFD 84

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY V E++G+G F  V +C++  TG + A K+IN +         L     + ++L+H N
Sbjct: 30  NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN 89
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D +    + YLVF+
Sbjct: 90  IVRLHDSIQEESFHYLVFD 108

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN-IQNEPEGVPSYLIAGVSLLKELEHD 100
           NY++ + IG+G F +V    ++ TG++VA+K+I+  Q  P  +   L   V ++K L H 
Sbjct: 16  NYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQK-LFREVRIMKILNHP 74
Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
           NIV+L +V+ T + +YLV EY
Sbjct: 75  NIVKLFEVIETEKTLYLVMEY 95

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY V E++G+G F  V +C++  TG + A K+IN +         L     + ++L+H N
Sbjct: 7   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN 66
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D +    + YLVF+
Sbjct: 67  IVRLHDSIQEESFHYLVFD 85

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y++ E++G+G F  V +C+ + TG++ A K+IN +         L     + + L+H NI
Sbjct: 6   YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 65
Query: 103 VRLLDVLTTGRYVYLVFE 120
           VRL D ++   + YLVF+
Sbjct: 66  VRLHDSISEEGFHYLVFD 83

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y++ E++G+G F  V +C+ + TG++ A K+IN +         L     + + L+H N
Sbjct: 5   EYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPN 64
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D ++   + YLVF+
Sbjct: 65  IVRLHDSISEEGFHYLVFD 83

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ ++ +G G +G V   ++  TG KVAIK +    + E         + LLK + H+N+
Sbjct: 27  YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV 86
Query: 103 VRLLDVLTTGRYV------YLVFEYLDLDLGSFIRKHTITSIR 139
           + LLDV T    +      YLV  ++  DLG  ++   +   R
Sbjct: 87  IGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDR 129

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS 193
           Y+APE  +    Y+   D+W+VGCI AEM++GK LF     DHL 
Sbjct: 191 YRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS--DHLD 233

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y++ E IG+G F  V +C+ L TG + A K+IN +         L     + + L+H N
Sbjct: 5   EYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLLKHSN 64
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D ++   + YLVF+
Sbjct: 65  IVRLHDSISEEGFHYLVFD 83

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 42  NYKVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
           N + V  IG+G FG V++      L  E    VA+KM+  +   + + +      +L+ E
Sbjct: 48  NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASAD-MQADFQREAALMAE 106
Query: 97  LEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRK---HTITSI-------RPHIKEV 145
            ++ NIV+LL V   G+ + L+FEY+   DL  F+R    HT+ S+       R  +   
Sbjct: 107 FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP 166
Query: 146 GSP 148
           G P
Sbjct: 167 GPP 169

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           NY++V+ +G+G FG+V    +  TG+KVA+K+IN +      +   +   +S L+ L H 
Sbjct: 14  NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 73
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
           +I++L DV+ +   + +V EY   +L  +I
Sbjct: 74  HIIKLYDVIKSKDEIIMVIEYAGNELFDYI 103

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           NY++V+ +G+G FG+V    +  TG+KVA+K+IN +      +   +   +S L+ L H 
Sbjct: 15  NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 74
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
           +I++L DV+ +   + +V EY   +L  +I
Sbjct: 75  HIIKLYDVIKSKDEIIMVIEYAGNELFDYI 104

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           NY++V+ +G+G FG+V    +  TG+KVA+K+IN +      +   +   +S L+ L H 
Sbjct: 5   NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 64
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
           +I++L DV+ +   + +V EY   +L  +I
Sbjct: 65  HIIKLYDVIKSKDEIIMVIEYAGNELFDYI 94

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           NY++V+ +G+G FG+V    +  TG+KVA+K+IN +      +   +   +S L+ L H 
Sbjct: 9   NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
           +I++L DV+ +   + +V EY   +L  +I
Sbjct: 69  HIIKLYDVIKSKDEIIMVIEYAGNELFDYI 98

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ V+K+G G +GEV  C +  T  + AIK+I   +      S L+  V++LK L+H NI
Sbjct: 39  YQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNI 98
Query: 103 VRLLDVLTTGRYVYLVFE 120
           ++L D     R  YLV E
Sbjct: 99  MKLYDFFEDKRNYYLVME 116

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++++ ++G G FG+VYK  N ET    A K+I+ ++E E +  Y++  + +L   +H NI
Sbjct: 39  WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE-LEDYMVE-IDILASCDHPNI 96
Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+LLD       ++++ E+
Sbjct: 97  VKLLDAFYYENNLWILIEF 115

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++++ ++G G FG+VYK  N ET    A K+I+ ++E E +  Y++  + +L   +H NI
Sbjct: 39  WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE-LEDYMVE-IDILASCDHPNI 96
Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+LLD       ++++ E+
Sbjct: 97  VKLLDAFYYENNLWILIEF 115

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 193 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 229

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 233

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 193 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 229

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 193 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 229

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++++ ++G G FG+VYK  N ET    A K+I+ ++E E +  Y++  + +L   +H NI
Sbjct: 39  WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE-LEDYMVE-IDILASCDHPNI 96
Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+LLD       ++++ E+
Sbjct: 97  VKLLDAFYYENNLWILIEF 115

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 201 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 237

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 193 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 229

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 233

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 191 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 227

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 193 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 229

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 191 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 227

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 195 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 231

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 233

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 233

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 198 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 234

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 199 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 235

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 190 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 226

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 233

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 198 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 234

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 195 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 231

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 195 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 231

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 213 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 249

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 213 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 249

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 233

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP
Sbjct: 213 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 249

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPS-YLIAGVSLLKELEHD 100
            Y+ V+K+G G +GEV  C +  TG + AIK+I   +      S  L+  V++LK+L+H 
Sbjct: 22  RYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHP 81
Query: 101 NIVRLLDVLTTGRYVYLVFE 120
           NI++L +     R  YLV E
Sbjct: 82  NIMKLYEFFEDKRNYYLVME 101

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPS-YLIAGVSLLKELEHDN 101
           Y+ V+K+G G +GEV  C +  TG + AIK+I   +      S  L+  V++LK+L+H N
Sbjct: 6   YQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPN 65
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           I++L +     R  YLV E
Sbjct: 66  IMKLYEFFEDKRNYYLVME 84

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y+V+  IG G +G   K      GK +  K ++  +  E     L++ V+LL+EL+H N
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 66
Query: 102 IVRLLDVL--TTGRYVYLVFEYLD-LDLGSFIRKHT 134
           IVR  D +   T   +Y+V EY +  DL S I K T
Sbjct: 67  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGT 102

>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC Length = 405

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD 190
           Y+APE  + +  Y+   D+WA+GCIFAE+++ +P+F C ++D
Sbjct: 201 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQED 242

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ--NEPEGVPSYLIAGVSLLKELEHDNIV 103
            E +G G FG+V+KC    TG K+A K+I  +   + E V +     +S++ +L+H N++
Sbjct: 94  TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNE----ISVMNQLDHANLI 149
Query: 104 RLLDVLTTGRYVYLVFEYLD 123
           +L D   +   + LV EY+D
Sbjct: 150 QLYDAFESKNDIVLVMEYVD 169

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y+V+  IG G +G   K      GK +  K ++  +  E     L++ V+LL+EL+H N
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 66
Query: 102 IVRLLDVL--TTGRYVYLVFEYLD-LDLGSFIRKHT 134
           IVR  D +   T   +Y+V EY +  DL S I K T
Sbjct: 67  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGT 102

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y+V+  IG G +G   K      GK +  K ++  +  E     L++ V+LL+EL+H N
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 66
Query: 102 IVRLLD--VLTTGRYVYLVFEYLD-LDLGSFIRKHT 134
           IVR  D  +  T   +Y+V EY +  DL S I K T
Sbjct: 67  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGT 102

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 62/197 (31%)
Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           +G G +G V    +    +KVA+K ++   Q+      +Y    + LLK L+H+N++ LL
Sbjct: 36  VGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTY--RELRLLKHLKHENVIGLL 93
Query: 107 DVLTTG------RYVYLVFEYLDLDLGSFIRKHTIT------------------------ 136
           DV T          VYLV   +  DL + ++   ++                        
Sbjct: 94  DVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKYIHSAGII 153
Query: 137 --SIRP-----------HIKEVGSPYKAPESR---IRSSVYSTPH------------DVW 168
              ++P            I + G   +A E     + +  Y  P             D+W
Sbjct: 154 HRDLKPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIW 213
Query: 169 AVGCIFAEMVSGKPLFP 185
           +VGCI AE++ GK LFP
Sbjct: 214 SVGCIMAELLQGKALFP 230

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEH-D 100
           Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      L K  +H D
Sbjct: 58  YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 116
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
            I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 117 KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 154

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVS 92
           Q   VK   Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      
Sbjct: 21  QSMSVKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAY 79
Query: 93  LLKELEH-DNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
           L K  +H D I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 80  LNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 126

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEH-D 100
           Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      L K  +H D
Sbjct: 11  YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 69
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
            I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 70  KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 107

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEH-D 100
           Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      L K  +H D
Sbjct: 58  YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 116
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
            I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 117 KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 154

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVPSYLIAGVSLLKELEHD 100
            YK    +G+G FGEV  C +  TG++ A+K+I+  Q + +     L+  V LLK+L+H 
Sbjct: 33  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHP 92
Query: 101 NIVRLLDVLTTGRYVYLVFE 120
           NI++L +      Y YLV E
Sbjct: 93  NIMKLYEFFEDKGYFYLVGE 112

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVPSYLIAGVSLLKELEHDN 101
           YK    +G+G FGEV  C +  TG++ A+K+I+  Q + +     L+  V LLK+L+H N
Sbjct: 28  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 87
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           I++L +      Y YLV E
Sbjct: 88  IMKLYEFFEDKGYFYLVGE 106

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEH-D 100
           Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      L K  +H D
Sbjct: 58  YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 116
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
            I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 117 KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 154

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVPSYLIAGVSLLKELEHDN 101
           YK    +G+G FGEV  C +  TG++ A+K+I+  Q + +     L+  V LLK+L+H N
Sbjct: 51  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 110
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           I++L +      Y YLV E
Sbjct: 111 IMKLYEFFEDKGYFYLVGE 129

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVS 92
           Q   VK   Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      
Sbjct: 21  QSMSVKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAY 79
Query: 93  LLKELEH-DNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
           L K  +H D I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 80  LNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 126

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVPSYLIAGVSLLKELEHDN 101
           YK    +G+G FGEV  C +  TG++ A+K+I+  Q + +     L+  V LLK+L+H N
Sbjct: 52  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 111
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           I++L +      Y YLV E
Sbjct: 112 IMKLYEFFEDKGYFYLVGE 130

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEH-D 100
           Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      L K  +H D
Sbjct: 14  YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 72
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
            I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 73  KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 110

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKE 96
           VK   Y ++++IG G   +V++ LN E  +  AIK +N++  + + + SY      L K 
Sbjct: 5   VKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL 63
Query: 97  LEH-DNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRP 140
            +H D I+RL D   T +Y+Y+V E  ++DL S+++K    SI P
Sbjct: 64  QQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDP 106

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 48  KIGQGVFGEVY--KCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVR 104
           ++G+G FG+V+  +C NL     K+ + +  ++   E           LL  L+H +IVR
Sbjct: 25  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 84
Query: 105 LLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
              V T GR + +VFEY+   DL  F+R H
Sbjct: 85  FFGVCTEGRPLLMVFEYMRHGDLNRFLRSH 114

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 48  KIGQGVFGEVY--KCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVR 104
           ++G+G FG+V+  +C NL     K+ + +  ++   E           LL  L+H +IVR
Sbjct: 19  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 78
Query: 105 LLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
              V T GR + +VFEY+   DL  F+R H
Sbjct: 79  FFGVCTEGRPLLMVFEYMRHGDLNRFLRSH 108

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 48  KIGQGVFGEVY--KCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVR 104
           ++G+G FG+V+  +C NL     K+ + +  ++   E           LL  L+H +IVR
Sbjct: 48  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 107
Query: 105 LLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
              V T GR + +VFEY+   DL  F+R H
Sbjct: 108 FFGVCTEGRPLLMVFEYMRHGDLNRFLRSH 137

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVPSYLIAGVSLLKELEHDN 101
           YK    +G+G FGEV  C +  TG++ A+K+I+  Q + +     L+  V LLK+L+H N
Sbjct: 28  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 87
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           I +L +      Y YLV E
Sbjct: 88  IXKLYEFFEDKGYFYLVGE 106

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 62/197 (31%)
Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           +G G +G V    +    +KVA+K ++   Q+      +Y    + LLK L+H+N++ LL
Sbjct: 28  VGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTY--RELRLLKHLKHENVIGLL 85
Query: 107 DVLTTG------RYVYLVFEYLDLDLGSFIRKHTIT------------------------ 136
           DV T          VYLV   +  DL + ++   ++                        
Sbjct: 86  DVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHSAGII 145
Query: 137 --SIRP-----------HIKEVGSPYKAPESR---IRSSVYSTPH------------DVW 168
              ++P            I + G   +A E     + +  Y  P             D+W
Sbjct: 146 HRDLKPSNVAVNEDCELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIW 205
Query: 169 AVGCIFAEMVSGKPLFP 185
           +VGCI AE++ GK LFP
Sbjct: 206 SVGCIMAELLQGKALFP 222

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     ++   P++  + S Y +APE    +  Y+T  D+W+VGCIFAEM+ G+P
Sbjct: 171 LKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEP 230
Query: 183 LF 184
           +F
Sbjct: 231 IF 232

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    Y+   D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 188 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    Y+   D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 188 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    Y+   D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 188 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 237

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 20  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 79
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTITS 137
           + LLDV T  R       VYLV   +  DL + ++   +T 
Sbjct: 80  IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTD 120

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    Y+   D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 184 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 233

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 62/197 (31%)
Query: 49  IGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           +G G +G V    +    +KVA+K ++   Q+      +Y    + LLK L+H+N++ LL
Sbjct: 36  VGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTY--RELRLLKHLKHENVIGLL 93
Query: 107 DVLTTG------RYVYLVFEYLDLDLGSFIRKHTIT------------------------ 136
           DV T          VYLV   +  DL + ++   ++                        
Sbjct: 94  DVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHSAGII 153
Query: 137 --SIRP-----------HIKEVGSPYKAPESR---IRSSVYSTPH------------DVW 168
              ++P            I + G   +A E     + +  Y  P             D+W
Sbjct: 154 HRDLKPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIW 213
Query: 169 AVGCIFAEMVSGKPLFP 185
           +VGCI AE++ GK LFP
Sbjct: 214 SVGCIMAELLQGKALFP 230

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N+
Sbjct: 44  YQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 103
Query: 103 VRLLDVLTTGRY------VYLVFEYLDLDLGSFIRKHTITS 137
           + LLDV T  R       VYLV   +  DL + ++   +T 
Sbjct: 104 IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTD 144

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR 197
           Y+APE  +    Y+   D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 208 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 257

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 58/209 (27%)
Query: 34  QMEKVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIA 89
            M K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L  
Sbjct: 3   HMSKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRR 62
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT----- 136
            V +   L H NI+RL         VYL+ EY  L         L  F  + T T     
Sbjct: 63  EVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL 122
Query: 137 ---------------SIRPH-----------IKEVGSPYKAPESR--------------- 155
                           I+P            I + G    AP SR               
Sbjct: 123 ANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEM 182
Query: 156 IRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           I   ++    D+W++G +  E + GKP F
Sbjct: 183 IEGRMHDEKVDLWSLGVLCYEFLVGKPPF 211

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y++ E++G+G F  V +C+ +  G++ A K+IN +         L     + + L+H NI
Sbjct: 24  YQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 83
Query: 103 VRLLDVLTTGRYVYLVFE 120
           VRL D ++   + YL+F+
Sbjct: 84  VRLHDSISEEGHHYLIFD 101

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y+T  D+W+ GC+ AE++ G+PLFP
Sbjct: 207 YRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFP 243

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV 196
           Y+APE  + S+ YS   DVW+ GCI AE+   +P+FP     H  L++
Sbjct: 188 YRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLI 235

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV 196
           Y+APE  + S+ YS   DVW+ GCI AE+   +P+FP     H  L++
Sbjct: 188 YRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLI 235

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV 196
           Y+APE  + S+ YS   DVW+ GCI AE+   +P+FP     H  L++
Sbjct: 188 YRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLI 235

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPS-----------YLIAGV 91
           Y  V K+G G +GEV  C       + AIK+I      +G  S            +   +
Sbjct: 38  YFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEI 97
Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
           SLLK L+H NI++L DV    +Y YLV E+
Sbjct: 98  SLLKSLDHPNIIKLFDVFEDKKYFYLVTEF 127

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLL 94
           EK++D  +KV   +G+G F  VY+  ++ TG +VAIKMI+ +     G+   +   V + 
Sbjct: 8   EKIED--FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIH 65
Query: 95  KELEHDNIVRLLDVLTTGRYVYLVFE 120
            +L+H +I+ L +      YVYLV E
Sbjct: 66  CQLKHPSILELYNYFEDSNYVYLVLE 91

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSY 86
           GS  M + ++ + K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E     
Sbjct: 18  GSHNMTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRD 75
Query: 87  LIAGVSLLKELEHDNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
               + +LK L+HDNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 76  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 125

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSY 86
           GS  M + ++ + K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E     
Sbjct: 18  GSHNMTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRD 75
Query: 87  LIAGVSLLKELEHDNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
               + +LK L+HDNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 76  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 125

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLET-GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
            Y++V+ +G+G FG+V +C++ +  G+ VA+K++      + V  Y  A  S ++ LEH 
Sbjct: 15  RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIV------KNVDRYCEAARSEIQVLEHL 68
Query: 101 NI---------VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIKEVG 146
           N          V++L+      ++ +VFE L L    FI+++     R  HI+++ 
Sbjct: 69  NTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMA 124

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC-GKKDHLSLIVRYFTALTNYLV 207
           Y+APE  I +  +S P DVW++GCI  E   G  +FP    K+HL+++ R    L  +++
Sbjct: 200 YRAPEV-ILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMI 258

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLET-GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
            Y++V+ +G+G FG+V +C++ +  G+ VA+K++      + V  Y  A  S ++ LEH 
Sbjct: 15  RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIV------KNVDRYCEAARSEIQVLEHL 68
Query: 101 NI---------VRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIR-PHIKEVG 146
           N          V++L+      ++ +VFE L L    FI+++     R  HI+++ 
Sbjct: 69  NTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMA 124

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC-GKKDHLSLIVRYFTALTNYLV 207
           Y+APE  I +  +S P DVW++GCI  E   G  +FP    K+HL+++ R    L  +++
Sbjct: 200 YRAPEV-ILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMI 258

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+APE  + ++ Y+   D+W++GC+F E++ GKPLF
Sbjct: 207 YRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLF 242

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKXVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLCGIKHLH 143
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 202
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 203 KENVDIWSVGCIMGEMVRHKILFP 226

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           + V+EK+G+G +G VYK ++ ETG+ VAIK + ++++ + +    I  +S++++ +  ++
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEI----IKEISIMQQCDSPHV 86
Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+          +++V EY
Sbjct: 87  VKYYGSYFKNTDLWIVMEY 105

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 4   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 60
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 61  NHENVVKFYGHRREGNIQYLFLEY 84

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKXVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 143
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 202
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 203 KENVDIWSVGCIMGEMVRHKILFP 226

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEIXINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEIXINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 123
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPF 209

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 123
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 183
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPF 209

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+++E IG G +G V       TG++VAIK I    +        +  + +LK  +HDN
Sbjct: 56  EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDN 115
Query: 102 IVRLLDVLTTG------RYVYLVFEYLDLDLGSFI 130
           I+ + D+L         + VY+V + ++ DL   I
Sbjct: 116 IIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQII 150

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  +    Y+   D+W+VGCIF EM++ + LFP
Sbjct: 229 YRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFP 265

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEIXINKML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 123
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPF 209

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 1   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 60
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 61  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 120
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 180
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPF 206

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 3   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 62
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 63  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 122
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 123 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 182
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPF 208

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y++ E++G+G F  V +C+     ++ A K+IN +         L     + + L+H N
Sbjct: 32  DYQLFEELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPN 91
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D ++   + YLVF+
Sbjct: 92  IVRLHDSISEEGFHYLVFD 110

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+++E IG G +G V       TG++VAIK I    +        +  + +LK  +HDN
Sbjct: 55  EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDN 114
Query: 102 IVRLLDVLTTG------RYVYLVFEYLDLDLGSFI 130
           I+ + D+L         + VY+V + ++ DL   I
Sbjct: 115 IIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQII 149

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE  +    Y+   D+W+VGCIF EM++ + LFP
Sbjct: 228 YRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFP 264

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 125
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 185
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPF 211

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 35  MEKVKDWNYKVVEKIGQGVFGEVY--KCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGV 91
           ++ +K  N  +  ++G+G FG+V+  +C NL     K+ + +  +++  +          
Sbjct: 7   VQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREA 66
Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            LL  L+H++IV+   V   G  + +VFEY+   DL  F+R H
Sbjct: 67  ELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAH 109

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKXVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLH 143
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 202
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 203 KENVDIWSVGCIMGEMVRHKILFP 226

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 2   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 61
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 62  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 121
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEG 181
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPF 207

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 2   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 61
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 62  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 121
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 181
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPF 207

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDN 101
           Y + E +G+G FG+V    + +T +KVA+K I+ Q  +   +   +   +S LK L H +
Sbjct: 11  YIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPH 70
Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFI 130
           I++L DV+TT   + +V EY   +L  +I
Sbjct: 71  IIKLYDVITTPTDIVMVIEYAGGELFDYI 99

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   VA+K++   Q E EGV   L   + +   L H 
Sbjct: 24  DFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHP 83
Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
           NI+RL +     R +YL+ EY
Sbjct: 84  NILRLYNYFYDRRRIYLILEY 104

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y++ E++G+G F  V +C+ +  G++ A  +IN +         L     + + L+H N
Sbjct: 12  EYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPN 71
Query: 102 IVRLLDVLTTGRYVYLVFE 120
           IVRL D ++   + YL+F+
Sbjct: 72  IVRLHDSISEEGHHYLIFD 90

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           +++V ++G G FG+VYK  N ETG   A K+I  ++E E +  Y++  + +L   +H  I
Sbjct: 13  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE-LEDYIVE-IEILATCDHPYI 70
Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+LL        ++++ E+
Sbjct: 71  VKLLGAYYHDGKLWIMIEF 89

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 18  KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 77
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 78  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 137
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 138 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 197
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 198 RMHDEKVDLWSLGVLCYEFLVGKPPF 223

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 2   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 61
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 62  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 121
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEG 181
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPF 207

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 117 LVFEYLDLDLGSFIRKHTITSIRPHIKE--VGSPYKAPESRIRSSVYSTPHDVWAVGCIF 174
           LV +  D  L   +  H   S + H+ E  V   Y++P   +  + Y+   D+WA GCIF
Sbjct: 158 LVLKIGDFGLARIMDPHY--SHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIF 215
Query: 175 AEMVSGKPLF 184
           AEM++GK LF
Sbjct: 216 AEMLTGKTLF 225

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG-VSLLKELEHDN 101
           Y ++E++G G FG V++C+   TG+    K IN    P  +  Y +   +S++ +L H  
Sbjct: 53  YDILEELGSGAFGVVHRCVEKATGRVFVAKFINT---PYPLDKYTVKNEISIMNQLHHPK 109
Query: 102 IVRLLDVLTTGRYVYLVFEYL 122
           ++ L D       + L+ E+L
Sbjct: 110 LINLHDAFEDKYEMVLILEFL 130

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           +++V ++G G FG+VYK  N ETG   A K+I  ++E E +  Y++  + +L   +H  I
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE-LEDYIVE-IEILATCDHPYI 78
Query: 103 VRLLDVLTTGRYVYLVFEY 121
           V+LL        ++++ E+
Sbjct: 79  VKLLGAYYHDGKLWIMIEF 97

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 27  KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 86
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 87  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 146
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 147 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEG 206
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPF 232

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 27  KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 86
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 87  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 146
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 147 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 206
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPF 232

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 57/209 (27%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIA 89
           GS++   ++D  +++   +G+G FG VY     ++   +A+K++   Q E  GV   L  
Sbjct: 4   GSKRQWALED--FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRR 61
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT----- 136
            V +   L H NI+RL         VYL+ EY  L         L  F  + T T     
Sbjct: 62  EVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL 121
Query: 137 ---------------SIRPH-----------IKEVGSPYKAPESR--------------- 155
                           I+P            I + G    AP SR               
Sbjct: 122 ANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEM 181
Query: 156 IRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           I   ++    D+W++G +  E + GKP F
Sbjct: 182 IEGRMHDEKVDLWSLGVLCYEFLVGKPPF 210

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 34  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 92
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 93  HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 128

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 17  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 75
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 76  HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 111

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 3   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 62
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 63  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 122
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I   G    AP SR               I  
Sbjct: 123 LSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 182
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPF 208

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 44  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 102
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           H NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 103 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 138

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 24  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 78
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 79  VRLYAVVTQ-EPIYIITEYME 98

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 123
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I   G    AP SR               I  
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPF 209

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 26  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 80
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 81  VRLYAVVTQ-EPIYIITEYME 100

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY  L         L  F  + T T        
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 125
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEG 185
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
             +    D+W++G +  E + GKP F
Sbjct: 186 RXHDEKVDLWSLGVLCYEFLVGKPPF 211

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 22  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 76
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 77  VRLYAVVTQ-EPIYIITEYME 96

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 22  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 76
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 77  VRLYAVVTQ-EPIYIITEYME 96

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 25  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 79
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 80  VRLYAVVTQ-EPIYIITEYME 99

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG-VPSYLIAGVSLLKELEHD 100
           N+++ +KIG+G F EVY+   L  G  VA+K + I +  +    +  I  + LLK+L H 
Sbjct: 33  NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHP 92
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIR 131
           N+++          + +V E  D  DL   I+
Sbjct: 93  NVIKYYASFIEDNELNIVLELADAGDLSRMIK 124

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 9   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 128
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVD 188
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 189 LWSLGVLCYEFLVGKPPF 206

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 8   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 67
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 68  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 127
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 128 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVD 187
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 188 LWSLGVLCYEFLVGKPPF 205

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 9   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 128
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVD 188
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 189 LWSLGVLCYEFLVGKPPF 206

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 9   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 128
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVD 188
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 189 LWSLGVLCYEFLVGKPPF 206

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 21  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 75
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 76  VRLYAVVTQ-EPIYIITEYME 95

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 9   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 128
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVD 188
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 189 LWSLGVLCYEFLVGKPPF 206

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 9   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 128
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVD 188
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 189 LWSLGVLCYEFLVGKPPF 206

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEPEGVPSYLIA 89
           GS  + K+ +  YK+V+K+G G    VY   +     KVAIK I I   E E        
Sbjct: 1   GSHMIGKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFER 60
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
            V    +L H NIV ++DV       YLV EY++   L  +I  H
Sbjct: 61  EVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH 105

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 16  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 70
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 71  VRLYAVVTQ-EPIYIITEYME 90

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 9   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 128
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVD 188
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 189 LWSLGVLCYEFLVGKPPF 206

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 18  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 72
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 73  VRLYAVVTQ-EPIYIITEYME 92

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 17  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 71
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 72  VRLYAVVTQ-EPIYIITEYME 91

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 16  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 70
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 71  VRLYAVVTQ-EPIYIITEYME 90

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 12  DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 131
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVD 191
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 192 LWSLGVLCYEFLVGKPPF 209

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 221
Query: 183 LFP 185
           +FP
Sbjct: 222 IFP 224

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 163 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 222
Query: 183 LFP 185
           +FP
Sbjct: 223 IFP 225

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 16  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 70
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 71  VRLYAVVTQ-EPIYIITEYME 90

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 166 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 225
Query: 183 LFP 185
           +FP
Sbjct: 226 IFP 228

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 221
Query: 183 LFP 185
           +FP
Sbjct: 222 IFP 224

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 12  DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 131
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVD 191
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 192 LWSLGVLCYEFLVGKPPF 209

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 221
Query: 183 LFP 185
           +FP
Sbjct: 222 IFP 224

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 221
Query: 183 LFP 185
           +FP
Sbjct: 222 IFP 224

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 12  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 66
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 67  VRLYAVVTQ-EPIYIITEYME 86

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 174 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 233
Query: 183 LFP 185
           +FP
Sbjct: 234 IFP 236

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 181 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 240
Query: 183 LFP 185
           +FP
Sbjct: 241 IFP 243

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 66/205 (32%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 19  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 76
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLG------------SFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VYLV E +D +L             S++    +  I+ H+
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIK-HL 135
Query: 143 KEVG------------------------------------SPY------KAPESRIRSSV 160
              G                                    +PY      +APE  I    
Sbjct: 136 HSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMG 194
Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y    D+W+VGCI  EMV  K LFP
Sbjct: 195 YKENVDIWSVGCIMGEMVRHKILFP 219

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 27  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 84
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 85  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 144
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 145 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 203
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 204 KENVDIWSVGCIMGEMVRHKILFP 227

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 170 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 229
Query: 183 LFP 185
           +FP
Sbjct: 230 IFP 232

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 25  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 82
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 83  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 142
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 143 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 201
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 202 KENVDIWSVGCIMGEMVRHKILFP 225

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLH 143
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 202
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 203 KENVDIWSVGCIMGEMVRHKILFP 226

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 66/205 (32%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 64  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 121
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLG------------SFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VYLV E +D +L             S++    +  I+ H+
Sbjct: 122 NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIK-HL 180
Query: 143 KEVG------------------------------------SPY------KAPESRIRSSV 160
              G                                    +PY      +APE  I    
Sbjct: 181 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMG 239
Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y    D+W+VGCI  EMV  K LFP
Sbjct: 240 YKENVDIWSVGCIMGEMVRHKILFP 264

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 174 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 233
Query: 183 LFP 185
           +FP
Sbjct: 234 IFP 236

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 19  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 76
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 136
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 137 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 195
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 196 KENVDIWSVGCIMGEMVRHKILFP 219

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 188 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 224

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 20  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 77
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 78  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 137
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 138 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 196
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 197 KENVDIWSVGCIMGEMVRHKILFP 220

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 193 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 229

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 143
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 202
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 203 KENVDIWSVGCIMGEMVRHKILFP 226

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 143
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 202
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 203 KENVDIWSVGCIMGEMVRHKILFP 226

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V+D +Y++ E++G G F  V KC    TGK+ A K I    + +   GV    I  
Sbjct: 6   RQEDVED-HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIER 64
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            V++L+E+ H NI+ L D+      V L+ E
Sbjct: 65  EVNILREIRHPNIITLHDIFENKTDVVLILE 95

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 188 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 224

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 201 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 237

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G FGEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 11  KLVERLGAGQFGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 65
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 66  VRLYAVVTQ-EPIYIITEYME 85

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 27  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 84
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 85  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 144
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 145 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 203
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 204 KENVDIWSVGCIMGEMVRHKILFP 227

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 188 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 224

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 64/204 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 20  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 77
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VYLV E +D +L   I+                   KH  
Sbjct: 78  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 137
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 138 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 196
Query: 162 STPHDVWAVGCIFAEMVSGKPLFP 185
               D+W+VGCI  EMV  K LFP
Sbjct: 197 KENVDIWSVGCIMGEMVRHKILFP 220

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 124 LDLGSFIRKHTITSIRPHIKEVGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           L L  F     +    P++  + S Y +APE    ++ Y++  DVW+ GC+ AE++ G+P
Sbjct: 196 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 255
Query: 183 LFP 185
           +FP
Sbjct: 256 IFP 258

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 216 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 252

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 66/205 (32%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 64  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHK 121
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLG------------SFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VYLV E +D +L             S++    +  I+ H+
Sbjct: 122 NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIK-HL 180
Query: 143 KEVG------------------------------------SPY------KAPESRIRSSV 160
              G                                    +PY      +APE  I    
Sbjct: 181 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMG 239
Query: 161 YSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y    D+W+VGCI  EMV  K LFP
Sbjct: 240 YKENVDIWSVGCIMGEMVRHKILFP 264

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 267 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 303

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 222 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 258

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G  GEV   +N  T + VA+K+++++   +  P  +   + + K L
Sbjct: 5   VEDWD--LVQTLGEGAAGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKML 61
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 62  NHENVVKFYGHRREGNIQYLFLEY 85

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---------IQNEPEGVPSYLIAGVS 92
            Y  +  +G G FG V+  ++ E  K+V +K I          I++   G  +  IA   
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIA--- 81
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEY--LDLDLGSFIRKH 133
           +L  +EH NI+++LD+     +  LV E     LDL +FI +H
Sbjct: 82  ILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH 124

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 224 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 260

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP
Sbjct: 226 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 262

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 71/198 (35%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     +    +A+K++   Q E  GV   L   V +   L H 
Sbjct: 6   DFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 65
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 66  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 125
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 126 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVD 185
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 186 LWSLGVLCYEFLVGKPPF 203

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           V+DW+  +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + +   L
Sbjct: 6   VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINAML 62
Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H+N+V+       G   YL  EY
Sbjct: 63  NHENVVKFYGHRREGNIQYLFLEY 86

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G GVF  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGVFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           E+IG+G FGEV+          VA+K    +  P  + +  +    +LK+  H NIVRL+
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCR-ETLPPDLKAKFLQEARILKQYSHPNIVRLI 178
Query: 107 DVLTTGRYVYLVFEYLD-LDLGSFIR 131
            V T  + +Y+V E +   D  +F+R
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFLR 204

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLL 106
           E+IG+G FGEV+          VA+K    +  P  + +  +    +LK+  H NIVRL+
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCR-ETLPPDLKAKFLQEARILKQYSHPNIVRLI 178
Query: 107 DVLTTGRYVYLVFEYLD-LDLGSFIR 131
            V T  + +Y+V E +   D  +F+R
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFLR 204

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSY 86
           GS    + ++ + K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E     
Sbjct: 1   GSRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRD 58
Query: 87  LIAGVSLLKELEHDNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
               + +LK L+HDNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 59  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 108

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 85/212 (40%), Gaps = 66/212 (31%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +    + VAIK ++   QN+     +Y    + L+K + H 
Sbjct: 26  YQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKVVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLGSFIR-------------------KHTI 135
           NI+ LL+V T  +       VY+V E +D +L   I+                   KH  
Sbjct: 84  NIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLCGIKHLH 143
Query: 136 TS------IRP-----------HIKEVG-----------SPY------KAPESRIRSSVY 161
           ++      ++P            I + G           +PY      +APE  I    Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV-ILGMGY 202
Query: 162 STPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS 193
               D+W+VGCI  EM+ G  LFP    DH+ 
Sbjct: 203 KENVDIWSVGCIMGEMIKGGVLFPG--TDHID 232

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y V E IG G + E  +C++  T  + A+K+I+        PS  I    LL+  +H N
Sbjct: 28  GYVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRD---PSEEIE--ILLRYGQHPN 82
Query: 102 IVRLLDVLTTGRYVYLVFEYL 122
           I+ L DV   G++VYLV E +
Sbjct: 83  IITLKDVYDDGKHVYLVTELM 103

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 71/198 (35%), Gaps = 55/198 (27%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY      +   +A+K++   Q E  GV   L   V +   L H 
Sbjct: 9   DFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT---------------- 136
           NI+RL         VYL+ EY  L         L  F  + T T                
Sbjct: 69  NILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKK 128
Query: 137 ----SIRPH-----------IKEVGSPYKAPESR---------------IRSSVYSTPHD 166
                I+P            I + G    AP SR               I   ++    D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVD 188
Query: 167 VWAVGCIFAEMVSGKPLF 184
           +W++G +  E + GKP F
Sbjct: 189 LWSLGVLCYEFLVGKPPF 206

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIA 89
           GS+   +VK  +Y + + +G G FG+V    +  TG KVA+K++N Q      V   +  
Sbjct: 1   GSKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKR 60
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
            +  LK   H +I++L  V++T    ++V EY+   +L  +I KH
Sbjct: 61  EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH 105

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y V E IG G + E  +C++  T  + A+K+I+        PS  I    LL+  +H NI
Sbjct: 29  YVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRD---PSEEIE--ILLRYGQHPNI 83
Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           + L DV   G++VYLV E +
Sbjct: 84  ITLKDVYDDGKHVYLVTELM 103

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 74/206 (35%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY            L  F  + T T        
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANA 125
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 185
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPF 211

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 58/193 (30%)
Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINI----------QNE------------PEGV 83
           +EKIG+G FGEV+K ++  T K VAIK+I++          Q E             +  
Sbjct: 32  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 91
Query: 84  PSYL-----------IAGVSLLKELEHD------------NIVRLLDVLTTGRYVY---- 116
            SYL           + G S L  LE               I++ LD L + + ++    
Sbjct: 92  GSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIK 151
Query: 117 ----LVFEYLDLDLGSFIRKHTITSIRPHIKE---VGSPYKAPESRIRSSVYSTPHDVWA 169
               L+ E+ ++ L  F     +T  +  IK    VG+P+      I+ S Y +  D+W+
Sbjct: 152 AANVLLSEHGEVKLADFGVAGQLTDTQ--IKRNTFVGTPFWMAPEVIKQSAYDSKADIWS 209
Query: 170 VGCIFAEMVSGKP 182
           +G    E+  G+P
Sbjct: 210 LGITAIELARGEP 222

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 31  GSEQMEKVKDWNY-KVVEKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSY 86
           GS +  K  D +Y K+ E IG G FGEV +      GKK   VAIK +      E     
Sbjct: 3   GSMEFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLK-GGYTERQRRE 61
Query: 87  LIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLD-LGSFIR 131
            ++  S++ + EH NI+RL  V+T    V ++ E+++   L SF+R
Sbjct: 62  FLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLR 107

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIA 89
           GS+   +VK  +Y + + +G G FG+V    +  TG KVA+K++N Q      V   +  
Sbjct: 1   GSKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKR 60
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
            +  LK   H +I++L  V++T    ++V EY+   +L  +I KH
Sbjct: 61  EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH 105

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 74/206 (35%), Gaps = 58/206 (28%)
Query: 37  KVKDW---NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVS 92
           K + W   ++++   +G+G FG VY     ++   +A+K++   Q E  GV   L   V 
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT-------- 136
           +   L H NI+RL         VYL+ EY            L  F  + T T        
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANA 125
Query: 137 ------------SIRPH-----------IKEVGSPYKAPESR---------------IRS 158
                        I+P            I + G    AP SR               I  
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEG 185
Query: 159 SVYSTPHDVWAVGCIFAEMVSGKPLF 184
            ++    D+W++G +  E + GKP F
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPF 211

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 58/193 (30%)
Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINI----------QNE------------PEGV 83
           +EKIG+G FGEV+K ++  T K VAIK+I++          Q E             +  
Sbjct: 12  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 71
Query: 84  PSYL-----------IAGVSLLKELEHD------------NIVRLLDVLTTGRYVY---- 116
            SYL           + G S L  LE               I++ LD L + + ++    
Sbjct: 72  GSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIK 131
Query: 117 ----LVFEYLDLDLGSFIRKHTITSIRPHIKE---VGSPYKAPESRIRSSVYSTPHDVWA 169
               L+ E+ ++ L  F     +T  +  IK    VG+P+      I+ S Y +  D+W+
Sbjct: 132 AANVLLSEHGEVKLADFGVAGQLTDTQ--IKRNXFVGTPFWMAPEVIKQSAYDSKADIWS 189
Query: 170 VGCIFAEMVSGKP 182
           +G    E+  G+P
Sbjct: 190 LGITAIELARGEP 202

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           +E +G G F EV+      TGK  A+K I  +  P    S L   +++LK+++H+NIV L
Sbjct: 14  MEVLGSGAFSEVFLVKQRLTGKLFALKCI--KKSPAFRDSSLENEIAVLKKIKHENIVTL 71
Query: 106 LDVLTTGRYVYLVFE 120
            D+  +  + YLV +
Sbjct: 72  EDIYESTTHYYLVMQ 86

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 58/193 (30%)
Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINI----------QNE------------PEGV 83
           +EKIG+G FGEV+K ++  T K VAIK+I++          Q E             +  
Sbjct: 27  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 86
Query: 84  PSYL-----------IAGVSLLKELEHD------------NIVRLLDVLTTGRYVY---- 116
            SYL           + G S L  LE               I++ LD L + + ++    
Sbjct: 87  GSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIK 146
Query: 117 ----LVFEYLDLDLGSFIRKHTITSIRPHIKE---VGSPYKAPESRIRSSVYSTPHDVWA 169
               L+ E+ ++ L  F     +T  +  IK    VG+P+      I+ S Y +  D+W+
Sbjct: 147 AANVLLSEHGEVKLADFGVAGQLTDTQ--IKRNXFVGTPFWMAPEVIKQSAYDSKADIWS 204
Query: 170 VGCIFAEMVSGKP 182
           +G    E+  G+P
Sbjct: 205 LGITAIELARGEP 217

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
           +Q E ++D  Y   + +G G F EV    +  T K VAIK I  +   EG    +   ++
Sbjct: 11  KQAEDIRDI-YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCI-AKKALEGKEGSMENEIA 68
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFE 120
           +L +++H NIV L D+  +G ++YL+ +
Sbjct: 69  VLHKIKHPNIVALDDIYESGGHLYLIMQ 96

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVY--KCLNLE-TGKKVAIKMINIQNEPEGVPSYLIAG 90
            ++ +K  +  +  ++G+G FG+V+  +C NL  T  K+ + +  +++            
Sbjct: 8   HVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQRE 67
Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
             LL  L+H++IV+   V   G  + +VFEY+   DL  F+R H
Sbjct: 68  AELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAH 111

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 58/193 (30%)
Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINI----------QNE------------PEGV 83
           +EKIG+G FGEV+K ++  T K VAIK+I++          Q E             +  
Sbjct: 12  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 71
Query: 84  PSYL-----------IAGVSLLKELEHD------------NIVRLLDVLTTGRYVY---- 116
            SYL           + G S L  LE               I++ LD L + + ++    
Sbjct: 72  GSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIK 131
Query: 117 ----LVFEYLDLDLGSFIRKHTITSIRPHIKE---VGSPYKAPESRIRSSVYSTPHDVWA 169
               L+ E+ ++ L  F     +T  +  IK    VG+P+      I+ S Y +  D+W+
Sbjct: 132 AANVLLSEHGEVKLADFGVAGQLTDTQ--IKRNTFVGTPFWMAPEVIKQSAYDSKADIWS 189
Query: 170 VGCIFAEMVSGKP 182
           +G    E+  G+P
Sbjct: 190 LGITAIELARGEP 202

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++ +V  +G+G FG VY     +    +A+K++   Q E EGV   L   + +   L H 
Sbjct: 15  DFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHP 74
Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
           NI+R+ +     + +YL+ E+
Sbjct: 75  NILRMYNYFHDRKRIYLMLEF 95

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 37  KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
           KV D NY++   IG+G +G VY   +    K VAIK +N   E       ++  +++L  
Sbjct: 25  KVPD-NYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNRMFEDLIDCKRILREITILNR 83
Query: 97  LEHDNIVRLLDV-----LTTGRYVYLVFEYLDLDLGSFIR 131
           L+ D I+RL D+     L     +Y+V E  D DL    +
Sbjct: 84  LKSDYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFK 123

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
           +Q E ++D  Y   + +G G F EV    +  T K VAIK I  +   EG    +   ++
Sbjct: 11  KQAEDIRDI-YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCI-AKEALEGKEGSMENEIA 68
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFE 120
           +L +++H NIV L D+  +G ++YL+ +
Sbjct: 69  VLHKIKHPNIVALDDIYESGGHLYLIMQ 96

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
           +Q E ++D  Y   + +G G F EV    +  T K VAIK I  +   EG    +   ++
Sbjct: 11  KQAEDIRDI-YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCI-AKEALEGKEGSMENEIA 68
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFE 120
           +L +++H NIV L D+  +G ++YL+ +
Sbjct: 69  VLHKIKHPNIVALDDIYESGGHLYLIMQ 96

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
           +Q E ++D  Y   + +G G F EV    +  T K VAIK I  +   EG    +   ++
Sbjct: 11  KQAEDIRDI-YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCI-AKEALEGKEGSMENEIA 68
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFE 120
           +L +++H NIV L D+  +G ++YL+ +
Sbjct: 69  VLHKIKHPNIVALDDIYESGGHLYLIMQ 96

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY +   IG+G +G VY   +  T K VAIK +N   E       ++  +++L  L+ D 
Sbjct: 27  NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDY 86
Query: 102 IVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRKHTITSIRPHIKEV 145
           I+RL D++          +Y+V E  D DL     K  I     HIK +
Sbjct: 87  IIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLF-KTPIFLTEEHIKTI 134

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIA 89
           GS++   ++D++  +   +G+G FG VY     ++   +A+K++   Q E  GV   L  
Sbjct: 4   GSKRQWTLEDFD--IGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRR 61
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT----- 136
            V +   L H NI+RL         VYL+ EY  L         L  F  + T T     
Sbjct: 62  EVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITEL 121
Query: 137 ---------------SIRPH-----------IKEVGSPYKAPESR--------------- 155
                           I+P            I + G    AP SR               
Sbjct: 122 ANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEM 181
Query: 156 IRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           I   ++    D+W++G +  E + G P F
Sbjct: 182 IEGRMHDEKVDLWSLGVLCYEFLVGMPPF 210

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI-NIQNEPEGVPSYLIA 89
           GS++   ++D++  +   +G+G FG VY     ++   +A+K++   Q E  GV   L  
Sbjct: 4   GSKRQWTLEDFD--IGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRR 61
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL--------DLGSFIRKHTIT----- 136
            V +   L H NI+RL         VYL+ EY  L         L  F  + T T     
Sbjct: 62  EVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITEL 121
Query: 137 ---------------SIRPH-----------IKEVGSPYKAPESR--------------- 155
                           I+P            I + G    AP SR               
Sbjct: 122 ANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEM 181
Query: 156 IRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           I   ++    D+W++G +  E + G P F
Sbjct: 182 IEGRMHDEKVDLWSLGVLCYEFLVGMPPF 210

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI---NIQNEPEGVPSYLIA-GVSLLKEL 97
           +Y++ E++G G F  V KC    TGK+ A K I    + +   GV    I   V++L+E+
Sbjct: 6   HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI 65
Query: 98  EHDNIVRLLDVLTTGRYVYLVFE 120
            H NI+ L D+      V L+ E
Sbjct: 66  RHPNIITLHDIFENKTDVVLILE 88

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 31  GSEQME--KVKDWNYKVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVP 84
           GSE  +  + ++ + K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E   
Sbjct: 1   GSEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHL 58
Query: 85  SYLIAGVSLLKELEHDNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
                 + +LK L+HDNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 59  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 110

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+V+++G G FGEV+         KVA+K   ++     V ++L    +L+K L+HD +V
Sbjct: 16  KLVKRLGAGQFGEVWMGY-YNNSTKVAVK--TLKPGTMSVQAFL-EEANLMKTLQHDKLV 71
Query: 104 RLLDVLTTGRYVYLVFEYL 122
           RL  V+T    +Y++ EY+
Sbjct: 72  RLYAVVTREEPIYIITEYM 90

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+V E IG G +    +C++  T  + A+K+I+        P+  I    LL+  +H NI
Sbjct: 24  YEVKEDIGVGSYSVCKRCIHKATNXEFAVKIIDKSKRD---PTEEIE--ILLRYGQHPNI 78
Query: 103 VRLLDVLTTGRYVYLVFE 120
           + L DV   G+YVY+V E
Sbjct: 79  ITLKDVYDDGKYVYVVTE 96

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI---NIQNEPEGVPSYLIA-GVSLLKEL 97
           +Y++ E++G G F  V KC    TGK+ A K I    + +   GV    I   V++L+E+
Sbjct: 27  HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLXSSRRGVSREEIEREVNILREI 86
Query: 98  EHDNIVRLLDVLTTGRYVYLVFE 120
            H NI+ L D+      V L+ E
Sbjct: 87  RHPNIITLHDIFENKTDVVLILE 109

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V E ++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKH 140

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 79/204 (38%), Gaps = 66/204 (32%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +   G  VA+K ++   QN+     +Y    + LLK + H 
Sbjct: 26  YQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAY--RELVLLKCVNHK 83
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLG------------SFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VYLV E +D +L             S++    +  I+ H+
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIK-HL 142
Query: 143 KEVG------------------------------------SPY------KAPESRIRSSV 160
              G                                    +PY      +APE  I    
Sbjct: 143 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEV-ILGMG 201
Query: 161 YSTPHDVWAVGCIFAEMVSGKPLF 184
           Y+   D+W+VGCI  E+V G  +F
Sbjct: 202 YAANVDIWSVGCIMGELVKGCVIF 225

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 17  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 75
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V E ++   L SF+RKH
Sbjct: 76  HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKH 111

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+V E IG G +    +C++  T  + A+K+I+        P+  I    LL+  +H NI
Sbjct: 24  YEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD---PTEEIE--ILLRYGQHPNI 78
Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           + L DV   G+YVY+V E +
Sbjct: 79  ITLKDVYDDGKYVYVVTELM 98

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           N  + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFD 104
Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           H NI+RL  V+T  + V +V E ++   L SF+RKH
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKH 140

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 12  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 69
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 70  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 106

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 66/204 (32%)
Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ IG G  G V    +   G  VA+K ++   QN+     +Y    + LLK + H 
Sbjct: 24  YQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAY--RELVLLKCVNHK 81
Query: 101 NIVRLLDVLTTGRY------VYLVFEYLDLDLG------------SFIRKHTITSIRPHI 142
           NI+ LL+V T  +       VYLV E +D +L             S++    +  I+ H+
Sbjct: 82  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIK-HL 140
Query: 143 KEVG------------------------------------SPY------KAPESRIRSSV 160
              G                                    +PY      +APE  I    
Sbjct: 141 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTASTNFMMTPYVVTRYYRAPEV-ILGMG 199
Query: 161 YSTPHDVWAVGCIFAEMVSGKPLF 184
           Y    D+W+VGCI  E+V G  +F
Sbjct: 200 YKENVDIWSVGCIMGELVKGSVIF 223

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+V+K+G G FGEV+         KVA+K   ++     V ++L    +L+K L+HD +V
Sbjct: 15  KLVKKLGAGQFGEVWMGY-YNNSTKVAVK--TLKPGTMSVQAFL-EEANLMKTLQHDKLV 70
Query: 104 RLLDVLTTGRYVYLVFEYL 122
           RL  V+T    +Y++ E++
Sbjct: 71  RLYAVVTKEEPIYIITEFM 89

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 70
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 71  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 107

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 11  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 68
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 69  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 105

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
           +Q E +K   ++  E +G G F EV       TGK  A+K I  +   +G  S +   ++
Sbjct: 15  KQAEDIKKI-FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIP-KKALKGKESSIENEIA 72
Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFE 120
           +L++++H+NIV L D+  +  ++YLV +
Sbjct: 73  VLRKIKHENIVALEDIYESPNHLYLVMQ 100

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 70
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 71  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 107

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 17  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 74
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 75  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 111

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 44  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 101
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 102 DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 138

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 70
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 71  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 107

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 18  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 75
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 76  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 112

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 19  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 76
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 77  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 113

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 20  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQH 77
Query: 100 DNIVRLLDVLTTG--RYVYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +   R + L+ EYL    L  +++KH
Sbjct: 78  DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 114

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-------QNEPEGVPSYLIAGVSLL 94
           NY+  E +G+GV   V +C++  T K+ A+K+I++         E + +    +  V +L
Sbjct: 18  NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 77
Query: 95  KELE-HDNIVRLLDVLTTGRYVYLVFEYL 122
           +++  H NI++L D   T  + +LVF+ +
Sbjct: 78  RKVSGHPNIIQLKDTYETNTFFFLVFDLM 106

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 4   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 63  EVSILKEIQHPNVITLHEVYENKTDVILILE 93

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           K+VE++G G  GEV+  +    G  KVA+K +    +    P   +A  +L+K+L+H  +
Sbjct: 16  KLVERLGAGQAGEVW--MGYYNGHTKVAVKSLK---QGSMSPDAFLAEANLMKQLQHQRL 70
Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           VRL  V+T    +Y++ EY++
Sbjct: 71  VRLYAVVTQ-EPIYIITEYME 90

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 4   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 63  EVSILKEIQHPNVITLHEVYENKTDVILILE 93

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-------QNEPEGVPSYLIAGVSLL 94
           NY+  E +G+GV   V +C++  T K+ A+K+I++         E + +    +  V +L
Sbjct: 18  NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 77
Query: 95  KELE-HDNIVRLLDVLTTGRYVYLVFEYL 122
           +++  H NI++L D   T  + +LVF+ +
Sbjct: 78  RKVSGHPNIIQLKDTYETNTFFFLVFDLM 106

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 48  KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLI-AGVSLLKELEHDNIVRLL 106
           K+G G FG+V+      +G +  IK IN   +   VP   I A + +LK L+H NI+++ 
Sbjct: 29  KLGSGAFGDVHLVEERSSGLERVIKTIN--KDRSQVPMEQIEAEIEVLKSLDHPNIIKIF 86
Query: 107 DVLTTGRYVYLVFE 120
           +V      +Y+V E
Sbjct: 87  EVFEDYHNMYIVME 100

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 25  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 83
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 84  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 129

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIA- 89
           + E V D+ Y   E++G G F  V KC    TG + A K I     ++   GV    I  
Sbjct: 5   RQENVDDY-YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFE 120
            VS+LKE++H N++ L +V      V L+ E
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILE 94

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 17  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 75
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 76  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 121

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           K+ E IG G FGEV +      GKK   VAIK +      E      ++  S++ + EH 
Sbjct: 19  KIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLK-GGYTERQRREFLSEASIMGQFEHP 77
Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLD-LGSFIR 131
           NI+RL  V+T    V ++ E+++   L SF+R
Sbjct: 78  NIIRLEGVVTNSMPVMILTEFMENGALDSFLR 109

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-------QNEPEGVPSYLIAGVSLL 94
           NY+  E +G+GV   V +C++  T K+ A+K+I++         E + +    +  V +L
Sbjct: 5   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 64
Query: 95  KELE-HDNIVRLLDVLTTGRYVYLVFEYL 122
           +++  H NI++L D   T  + +LVF+ +
Sbjct: 65  RKVSGHPNIIQLKDTYETNTFFFLVFDLM 93

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 37  KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG-----V 91
           +VK  +Y + + +G G FG+V    +  TG KVA+K++N Q     + S  + G     +
Sbjct: 12  RVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQK----IRSLDVVGKIRREI 67
Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
             LK   H +I++L  V++T   +++V EY+
Sbjct: 68  QNLKLFRHPHIIKLYQVISTPSDIFMVMEYV 98

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 58/193 (30%)
Query: 46  VEKIGQGVFGEVYKCLNLETGKKVAIKMINI----------QNEP--------------- 80
           +E+IG+G FGEV+K ++  T + VAIK+I++          Q E                
Sbjct: 28  LERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYVTKYY 87
Query: 81  ----EGVPSYLI-------AGVSLLKELEHD---------NIVRLLDVLTTGRYVY---- 116
               +G   ++I       + + LL+    D          I++ LD L + + ++    
Sbjct: 88  GSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIK 147
Query: 117 ----LVFEYLDLDLGSFIRKHTITSIRPHIKE---VGSPYKAPESRIRSSVYSTPHDVWA 169
               L+ E  D+ L  F     +T  +  IK    VG+P+      I+ S Y +  D+W+
Sbjct: 148 AANVLLSEQGDVKLADFGVAGQLTDTQ--IKRNTFVGTPFWMAPEVIQQSAYDSKADIWS 205
Query: 170 VGCIFAEMVSGKP 182
           +G    E+  G+P
Sbjct: 206 LGITAIELAKGEP 218

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 26  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 84
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 85  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 130

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 23  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 81
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 82  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 127

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 25  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 83
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 84  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 129

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 32  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 90
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 91  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 136

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+++ IG+G FG+V   L    G KVA+K I    + +      +A  S++ +L H N+V
Sbjct: 196 KLLQTIGKGEFGDVM--LGDYRGNKVAVKCI----KNDATAQAFLAEASVMTQLRHSNLV 249
Query: 104 RLLDVLTTGR-YVYLVFEYL 122
           +LL V+   +  +Y+V EY+
Sbjct: 250 QLLGVIVEEKGGLYIVTEYM 269

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+++ IG+G FG+V   L    G KVA+K I    + +      +A  S++ +L H N+V
Sbjct: 9   KLLQTIGKGEFGDVM--LGDYRGNKVAVKCI----KNDATAQAFLAEASVMTQLRHSNLV 62
Query: 104 RLLDVLTTGR-YVYLVFEYL 122
           +LL V+   +  +Y+V EY+
Sbjct: 63  QLLGVIVEEKGGLYIVTEYM 82

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 19  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 77
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 78  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 123

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+++ IG+G FG+V   L    G KVA+K I    + +      +A  S++ +L H N+V
Sbjct: 15  KLLQTIGKGEFGDVM--LGDYRGNKVAVKCI----KNDATAQAFLAEASVMTQLRHSNLV 68
Query: 104 RLLDVLTTGR-YVYLVFEYL 122
           +LL V+   +  +Y+V EY+
Sbjct: 69  QLLGVIVEEKGGLYIVTEYM 88

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 54  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 112
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 113 VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 158

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 19  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 77
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 78  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 123

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 48  KIGQGVFGEVYK-----CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           ++GQG FG VY+      +  E   +VAIK +N          +L    S++KE    ++
Sbjct: 26  ELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKEFNCHHV 84
Query: 103 VRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           VRLL V++ G+   ++ E +   DL S++R     S+RP ++   +P  AP S
Sbjct: 85  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR-----SLRPEME--NNPVLAPPS 130

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+++ IG+G FG+V   L    G KVA+K I    + +      +A  S++ +L H N+V
Sbjct: 24  KLLQTIGKGEFGDVM--LGDYRGNKVAVKCI----KNDATAQAFLAEASVMTQLRHSNLV 77
Query: 104 RLLDVLTTGR-YVYLVFEYL 122
           +LL V+   +  +Y+V EY+
Sbjct: 78  QLLGVIVEEKGGLYIVTEYM 97

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGK-----KVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
           N +  + +G G FG+V +      GK     KVA+KM+      +   + L++ + ++  
Sbjct: 32  NLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA-LMSELKIMSH 90
Query: 97  L-EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           L +H+NIV LL   T G  V ++ EY    DL +F+R+     + P +    +P + PE 
Sbjct: 91  LGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSL----APGQDPEG 146

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 54/207 (26%)
Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKM------------INIQNEPEGVPSYLIA 89
           +Y++V K+G+G + EV++ +N+   +KV +K+            I I     G P+ +I 
Sbjct: 38  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKNKIKREIKILENLRGGPN-IIT 96
Query: 90  GVSLLKE---------LEHDN---IVRLLDVLTTGR---YVYLVFEYLDL--DLGSF--- 129
              ++K+          EH N     +L   LT      Y+Y + + LD    +G     
Sbjct: 97  LADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRD 156
Query: 130 IRKHTITSIRPHIK--------------------EVGSPY-KAPESRIRSSVYSTPHDVW 168
           ++ H +     H K                     V S Y K PE  +   +Y    D+W
Sbjct: 157 VKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMW 216
Query: 169 AVGCIFAEMVSGKPLFPCGKKDHLSLI 195
           ++GC+ A M+  K  F  G  ++  L+
Sbjct: 217 SLGCMLASMIFRKEPFFHGHDNYDQLV 243

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 48  KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLD 107
           KIG+G  G V       TGK+VA+K ++++ +       L   V ++++  HDN+V +  
Sbjct: 52  KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRR--ELLFNEVVIMRDYHHDNVVDMYS 109
Query: 108 VLTTGRYVYLVFEYLDLDLGSFIRKHT 134
               G  +++V E+L+    + I  HT
Sbjct: 110 SYLVGDELWVVMEFLEGGALTDIVTHT 136

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 36  EKVKDWNYKVVEKIGQGVFGEVY---KCLNLETGKKVAIKMIN----IQNEPEGVPSYLI 88
           EK++   ++++  +G+G +G+V+   K     TGK  A+K++     ++N  +   ++  
Sbjct: 12  EKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKD--TAHTK 69
Query: 89  AGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
           A  ++L+E++H  IV L+    TG  +YL+ EYL
Sbjct: 70  AERNILEEVKHPFIVDLIYAFQTGGKLYLILEYL 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-50
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-48
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	9e-46
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-45
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-43
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-43
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-43
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	7e-38
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-37
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-34
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-12
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-33
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	3e-13
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-33
3niz_A	311	Rhodanese family protein; structural genomics, str	9e-13
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-31
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-11
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-29
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-29
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	4e-28
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-28
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	8e-26
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	4e-12
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	7e-23
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-22
3rp9_A	458	Mitogen-activated protein kinase; structural genom	6e-10
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-21
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-20
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-20
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-14
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-05
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-19
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-08
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	7e-19
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-18
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-18
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-05
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	4e-18
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	4e-18
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	5e-18
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	3e-13
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	7e-18
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	9e-13
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	8e-18
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	8e-18
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-17
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-17
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	6e-13
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-17
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-17
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-17
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-17
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-17
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-17
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-17
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-17
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-17
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-17
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-17
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-17
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	5e-17
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-17
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	7e-17
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-17
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	9e-17
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-16
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-16
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-16
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-16
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-16
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-16
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	7e-13
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	1e-16
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	4e-09
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-16
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-16
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-16
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-16
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-16
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-16
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-16
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-16
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	1e-12
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-16
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	4e-16
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-16
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-16
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-16
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-16
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	5e-16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-16
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	5e-16
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-13
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-16
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	6e-16
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	6e-16
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	7e-16
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	9e-16
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	9e-16
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	9e-16
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-15
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-15
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	1e-15
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-15
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-15
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-15
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-15
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-15
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-15
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-15
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-15
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	4e-15
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-15
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-15
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-12
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-15
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	5e-15
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-12
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-15
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	5e-15
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	6e-15
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	6e-15
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	7e-15
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	1e-11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-15
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	8e-15
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	8e-15
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	5e-11
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	8e-15
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-14
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-12
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-14
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-14
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-14
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-14
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-14
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-14
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	6e-04
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-14
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-14
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-14
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-14
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-14
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-14
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	3e-14
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-04
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	3e-14
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	3e-14
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-14
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-14
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	5e-14
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-12
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	6e-14
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	8e-14
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	8e-14
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-13
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-13
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-13
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-13
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-13
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-13
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	2e-13
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	5e-08
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-13
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-13
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-13
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-13
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-13
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-13
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	5e-13
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	6e-13
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	6e-13
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	8e-13
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-12
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-12
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	5e-08
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-12
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-12
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-12
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-12
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	5e-12
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	6e-12
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	6e-12
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-12
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-11
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	2e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-11
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-11
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-04
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-11
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	3e-11
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	4e-11
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	5e-11
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	6e-11
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	9e-11
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-10
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-10
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-10
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-10
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-10
3an0_A	340	Dual specificity mitogen-activated protein kinase;	4e-10
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	5e-10
3soc_A	322	Activin receptor type-2A; structural genomics cons	5e-10
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-10
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-10
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-09
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-09
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-09
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	6e-09
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	6e-09
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	9e-09
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	1e-08
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-08
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	2e-08
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	3e-08
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	9e-08
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-07
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	1e-06
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-07
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-07
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-06
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	6e-06
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-05
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	2e-05
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	1e-04

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score =  165 bits (421), Expect = 1e-50
 Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 60/215 (27%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ + KIG+G +G V+KC N +TG+ VAIK      +   +    +  + +LK+L+H N
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPN 63

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK------------------ 143
           +V LL+V    R ++LVFEY D  +   + ++        +K                  
Sbjct: 64  LVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNC 123

Query: 144 ---------------------------EVGSP------------YKAPESRIRSSVYSTP 164
                                       +  P            Y++PE  +  + Y  P
Sbjct: 124 IHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPP 183

Query: 165 HDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
            DVWA+GC+FAE++SG PL+P GK   D L LI +
Sbjct: 184 VDVWAIGCVFAELLSGVPLWP-GKSDVDQLYLIRK 217

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score =  160 bits (406), Expect = 3e-48
 Identities = 55/226 (24%), Positives = 87/226 (38%), Gaps = 65/226 (28%)

Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG 90
             + MEK     Y+ +  +G+G +G V KC N +TG+ VAIK     ++ + V    +  
Sbjct: 20  YFQSMEK-----YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMRE 74

Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK------- 143
           + LLK+L H+N+V LL+V    +  YLVFE++D  +   +           ++       
Sbjct: 75  IKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQII 134

Query: 144 --------------------------------------EVGSPYKA------------PE 153
                                                  + +P +             PE
Sbjct: 135 NGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPE 194

Query: 154 SRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
             +    Y    DVWA+GC+  EM  G+PLFP G    D L  I+ 
Sbjct: 195 LLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFP-GDSDIDQLYHIMM 239

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score =  153 bits (389), Expect = 9e-46
 Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 69/230 (30%)

Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG 90
            +  ++      Y+ + K+G+G +GEVYK ++  T + VAIK I +++E EGVP   I  
Sbjct: 29  SATSID-----RYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIRE 83

Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD------LDLGSFIRKHTITSI------ 138
           VSLLKEL+H NI+ L  V+     ++L+FEY +      +D    +    I S       
Sbjct: 84  VSLLKELQHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLIN 143

Query: 139 -----------------------------RPHIK--------EVGSP------------Y 149
                                         P +K          G P            Y
Sbjct: 144 GVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWY 203

Query: 150 KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
           + PE  + S  YST  D+W++ CI+AEM+   PLFP G    D L  I  
Sbjct: 204 RPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFP-GDSEIDQLFKIFE 252

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score =  153 bits (388), Expect = 2e-45
 Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 63/218 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE---PEGVPSYLIAGVSLLKELE 98
            Y+ ++ +G+G F  VYK  +  T + VAIK I + +     +G+    +  + LL+EL 
Sbjct: 11  RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS 70

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK--------------- 143
           H NI+ LLD       + LVF++++ DL   I+ +++     HIK               
Sbjct: 71  HPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ 130

Query: 144 ------------------------------EVGSPYK------------APESRIRSSVY 161
                                           GSP +            APE    + +Y
Sbjct: 131 HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMY 190

Query: 162 STPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
               D+WAVGCI AE++   P  P G    D L+ I  
Sbjct: 191 GVGVDMWAVGCILAELLLRVPFLP-GDSDLDQLTRIFE 227

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score =  147 bits (374), Expect = 1e-43
 Identities = 69/215 (32%), Positives = 97/215 (45%), Gaps = 61/215 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y  ++K+G+G +  VYK  +  T   VA+K I +++E EG P   I  VSLLK+L+H N
Sbjct: 3   TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHAN 61

Query: 102 IVRLLDVLTTGRYVYLVFEYL--DL-----DLGSFIRKHTITSI---------------- 138
           IV L D++ T + + LVFEYL  DL     D G+ I  H +                   
Sbjct: 62  IVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKV 121

Query: 139 --------------RPHIK--------EVGSP------------YKAPESRIRSSVYSTP 164
                         R  +K            P            Y+ P+  + S+ YST 
Sbjct: 122 LHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQ 181

Query: 165 HDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
            D+W VGCIF EM +G+PLFP G   ++ L  I R
Sbjct: 182 IDMWGVGCIFYEMATGRPLFP-GSTVEEQLHFIFR 215

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score =  146 bits (371), Expect = 2e-43
 Identities = 67/216 (31%), Positives = 97/216 (44%), Gaps = 61/216 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +EKIG+G +G V+K  N ET + VA+K + + ++ EGVPS  +  + LLKEL+H N
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYL--DL-----DLGSFIRKHTITSI---------------- 138
           IVRL DVL + + + LVFE+   DL          +    + S                 
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNV 122

Query: 139 --------------RPHIK--------EVGSP------------YKAPESRIRSSVYSTP 164
                            +K          G P            Y+ P+    + +YST 
Sbjct: 123 LHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTS 182

Query: 165 HDVWAVGCIFAEMVS-GKPLFPCGK--KDHLSLIVR 197
            D+W+ GCIFAE+ + G+PLFP G    D L  I R
Sbjct: 183 IDMWSAGCIFAELANAGRPLFP-GNDVDDQLKRIFR 217

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score =  133 bits (336), Expect = 7e-38
 Identities = 68/244 (27%), Positives = 96/244 (39%), Gaps = 83/244 (34%)

Query: 26  VKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNL-ETGKKVAIKMINIQNEPEGVP 84
           ++K       +      Y+ V +IG+G +G+V+K  +L   G+ VA+K + +Q   EG+P
Sbjct: 1   MEKDGLCRADQ-----QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMP 55

Query: 85  SYLIAGVSLLKEL---EHDNIVRLLDVLTTGRY-----VYLVFEY--------LDLDLGS 128
              I  V++L+ L   EH N+VRL DV T  R      + LVFE+        LD     
Sbjct: 56  LSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEP 115

Query: 129 FIRKHTITSI------------------------------RPHIK--------EVGSP-- 148
            +   TI  +                                 IK               
Sbjct: 116 GVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMA 175

Query: 149 ---------YKAPE----SRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLS 193
                    Y+APE    S      Y+TP D+W+VGCIFAEM   KPLF  G    D L 
Sbjct: 176 LTSVVVTLWYRAPEVLLQSS-----YATPVDLWSVGCIFAEMFRRKPLFR-GSSDVDQLG 229

Query: 194 LIVR 197
            I+ 
Sbjct: 230 KILD 233

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score =  131 bits (331), Expect = 2e-37
 Identities = 68/241 (28%), Positives = 90/241 (37%), Gaps = 85/241 (35%)

Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG---VPSYL 87
           GS          Y+ V +IG G +G VYK  +  +G  VA+K + + N   G   +P   
Sbjct: 4   GSMATS-----RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPIST 58

Query: 88  IAGVSLLKEL---EHDNIVRLLDVLTTGRY-----VYLVFEY--------LDLDLGSFIR 131
           +  V+LL+ L   EH N+VRL+DV  T R      V LVFE+        LD      + 
Sbjct: 59  VREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLP 118

Query: 132 KHTITSI------------------------------RPHIK--------EVGSP----- 148
             TI  +                                 +K                  
Sbjct: 119 AETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTP 178

Query: 149 ------YKAPE----SRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
                 Y+APE    S      Y+TP D+W+VGCIFAEM   KPLF  G    D L  I 
Sbjct: 179 VVVTLWYRAPEVLLQST-----YATPVDMWSVGCIFAEMFRRKPLFC-GNSEADQLGKIF 232

Query: 197 R 197
            
Sbjct: 233 D 233

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score =  122 bits (309), Expect = 3e-34
 Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y  +EKIG+G +G VYK  N   G+  A+K I ++ E EG+PS  I  +S+LKEL+H N
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           IV+L DV+ T + + LVFE+LD DL   +            K
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAK 103

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
           Y+AP+  + S  YST  D+W+VGCIFAEMV+G PLFP G    D L  I R
Sbjct: 166 YRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFP-GVSEADQLMRIFR 215

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score =  121 bits (307), Expect = 1e-33
 Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            +K +EK+G G +  VYK LN  TG  VA+K + + +E EG PS  I  +SL+KEL+H+N
Sbjct: 6   QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSE-EGTPSTAIREISLMKELKHEN 64

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKE 144
           IVRL DV+ T   + LVFE++D DL  ++   T+ +    ++ 
Sbjct: 65  IVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLEL 107

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
           Y+AP+  + S  YST  D+W+ GCI AEM++GKPLFP G   ++ L LI  
Sbjct: 174 YRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFP-GTNDEEQLKLIFD 223

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score =  121 bits (305), Expect = 2e-33
 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +EK+G+G +G VYK  +   G+ VA+K I +  E EG+PS  I  +SLLKEL H N
Sbjct: 22  KYQKLEKVGEGTYGVVYKAKD-SQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN 80

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           IV L+DV+ + R + LVFE+++ DL   + ++        IK
Sbjct: 81  IVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIK 122

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 64.9 bits (159), Expect = 9e-13
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
           Y+AP+  + S  YST  D+W++GCIFAEM++GKPLFP G    D L  I  
Sbjct: 185 YRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFP-GVTDDDQLPKIFS 234

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score =  116 bits (292), Expect = 2e-31
 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 8/110 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ + KIGQG FGEV+K  + +TG+KVA+K + ++NE EG P   +  + +L+ L+H+N
Sbjct: 18  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 77

Query: 102 IVRLLDVLTTGRY--------VYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           +V L+++  T           +YLVF++ + DL   +    +      IK
Sbjct: 78  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIK 127

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
           Y+ PE  +    Y  P D+W  GCI AEM +  P+   G   +  L+LI +
Sbjct: 194 YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQ-GNTEQHQLALISQ 243

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score =  111 bits (279), Expect = 1e-29
 Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 66/216 (30%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHD 100
           +Y++V K+G+G + EV++ +N+   +KV +K++    + +     +   + +L+ L    
Sbjct: 37  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK-----IKREIKILENLRGGP 91

Query: 101 NIVRLLDVLT--TGRYVYLVFEYLDL-DLGSFIRKHTITSIR------------------ 139
           NI+ L D++     R   LVFE+++  D     +  T   IR                  
Sbjct: 92  NIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGI 151

Query: 140 ------PH----------IK-------EVGSP------------YKAPESRIRSSVYSTP 164
                 PH          ++       E   P            +K PE  +   +Y   
Sbjct: 152 MHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYS 211

Query: 165 HDVWAVGCIFAEMVSGK-PLFPCGK--KDHLSLIVR 197
            D+W++GC+ A M+  K P F  G    D L  I +
Sbjct: 212 LDMWSLGCMLASMIFRKEPFFH-GHDNYDQLVRIAK 246

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  109 bits (274), Expect = 5e-29
 Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 70/224 (31%)

Query: 30  NGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIA 89
           N   Q   VK   Y ++++IG G   +V++ LN E  +  AIK +N++            
Sbjct: 17  NLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRN 75

Query: 90  GVSLLKELEH--DNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH---TITSIRPHIKE 144
            ++ L +L+   D I+RL D   T +Y+Y+V E  ++DL S+++K         + + K 
Sbjct: 76  EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKN 135

Query: 145 -----------------------------------------------------VGSP-YK 150
                                                                VG+  Y 
Sbjct: 136 MLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYM 195

Query: 151 APE----------SRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
            PE          +    S  S   DVW++GCI   M  GK  F
Sbjct: 196 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF 239

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  107 bits (269), Expect = 4e-28
 Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 70/217 (32%)

Query: 37  KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
            VK   Y ++++IG G   +V++ LN E  +  AIK +N++             ++ L +
Sbjct: 5   SVKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNK 63

Query: 97  LEH--DNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH---TITSIRPHIKEV------ 145
           L+   D I+RL D   T +Y+Y+V E  ++DL S+++K         + + K +      
Sbjct: 64  LQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHT 123

Query: 146 -----------------------------------------------GSP-YKAPE---- 153
                                                          G+  Y  PE    
Sbjct: 124 IHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKD 183

Query: 154 ------SRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
                 +    S  S   DVW++GCI   M  GK  F
Sbjct: 184 MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF 220

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  107 bits (269), Expect = 8e-28
 Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 70/227 (30%)

Query: 27  KKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY 86
           K ++ + +   VK   Y ++++IG G   +V++ LN E  +  AIK +N++         
Sbjct: 42  KASSSANECISVKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDS 100

Query: 87  LIAGVSLLKELEH--DNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH---TITSIRPH 141
               ++ L +L+   D I+RL D   T +Y+Y+V E  ++DL S+++K         + +
Sbjct: 101 YRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSY 160

Query: 142 IKEV-----------------------------------------------------GSP 148
            K +                                                     G+ 
Sbjct: 161 WKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGAV 220

Query: 149 -YKAPE----------SRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
            Y  PE          +    S  S   DVW++GCI   M  GK  F
Sbjct: 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF 267

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score =  102 bits (255), Expect = 8e-26
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 28  KTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPS 85
           K   S + E+V+D       K+G+G +G VYK    +    K  A+K I    E  G+  
Sbjct: 8   KVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQI----EGTGISM 63

Query: 86  YLIAGVSLLKELEHDNIVRLLDVLT--TGRYVYLVFEYLDLDLGSFIRKH 133
                ++LL+EL+H N++ L  V      R V+L+F+Y + DL   I+ H
Sbjct: 64  SACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFH 113

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 17/38 (44%), Positives = 28/38 (73%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC 186
           Y+APE  + +  Y+   D+WA+GCIFAE+++ +P+F C
Sbjct: 201 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 238

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 94.4 bits (235), Expect = 7e-23
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 76/233 (32%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG---VSLLKEL-E 98
           Y+V++ IG+G FG+V K  + +  + VA+KM+           +       + +L+ L +
Sbjct: 99  YEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVR------NEKRFHRQAAEEIRILEHLRK 152

Query: 99  HD-----NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH-----TITSIR--------- 139
            D     N++ +L+  T   ++ + FE L ++L   I+K+     ++  +R         
Sbjct: 153 QDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQC 212

Query: 140 --------------------------PHIK-----------EVGSPY------KAPESRI 156
                                       IK           +    Y      +APE  I
Sbjct: 213 LDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEV-I 271

Query: 157 RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVRYFTALTNYLV 207
             + Y  P D+W++GCI AE+++G PL P G+   D L+ ++      +  L+
Sbjct: 272 LGARYGMPIDMWSLGCILAELLTGYPLLP-GEDEGDQLACMIELLGMPSQKLL 323

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y++   IG G +G V +  +    + VAIK I    E       ++  +++L  L HD+
Sbjct: 54  RYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDH 113

Query: 102 IVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           +V++LD++          +Y+V E  D D     R     +   HIK
Sbjct: 114 VVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFRTPVYLTEL-HIK 159

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 11/48 (22%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-----------GKPLFP 185
           Y+APE  +    Y+   DVW++GCIFAE+++             PLFP
Sbjct: 249 YRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFP 296

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 26  VKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPS 85
           V  T G        + +Y   + IG G FG VY+    ++G+ VAIK +      +    
Sbjct: 40  VVATPGQGPDRPQ-EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE- 97

Query: 86  YLIAGVSLLKELEHDNIVRLLDVLTTGR------YVYLVFEYLDLDLGSFIRKHTITSIR 139
                + ++++L+H NIVRL     +        Y+ LV +Y+   +    R ++     
Sbjct: 98  -----LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQT 152

Query: 140 ---PHIK 143
               ++K
Sbjct: 153 LPVIYVK 159

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 69.4 bits (170), Expect = 4e-14
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP G    D L  I++
Sbjct: 222 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP-GDSGVDQLVEIIK 271

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y  ++KIG+G FG+     + E G++  IK INI              V++L  ++H N
Sbjct: 25  KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPN 84

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           IV+  +       +Y+V +Y +  DL   I   
Sbjct: 85  IVQYRESFEENGSLYIVMDYCEGGDLFKRINAQ 117

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 145 VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           +G+P Y +PE    +  Y+   D+WA+GC+  E+ + K  F
Sbjct: 186 IGTPYYLSPE-ICENKPYNNKSDIWALGCVLYELCTLKHAF 225

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 24  KVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV 83
           KV+K      +  + ++  Y   + IG G FG V++   +E+  +VAIK +      +  
Sbjct: 23  KVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVESD-EVAIKKVLQDKRFKNR 81

Query: 84  PSYLIAGVSLLKELEHDNIVRLLDVLTTG------RYVYLVFEYLDLDLGSFIRKHTITS 137
                  + +++ ++H N+V L     +        ++ LV EY+   +    R +    
Sbjct: 82  E------LQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLK 135

Query: 138 IR---PHIK 143
                  IK
Sbjct: 136 QTMPMLLIK 144

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           Y+APE    ++ Y+T  D+W+ GC+ AE++ G+PLFP G+   D L  I++
Sbjct: 207 YRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFP-GESGIDQLVEIIK 256

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 60/200 (30%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
            K   +IG+G F  VYK L+ ET  +VA   +  +   +           +LK L+H NI
Sbjct: 28  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI 87

Query: 103 VRLL----DVLTTGRYVYLVFEYLDL-DLGSFIRKH---TITSIRPHIKEV--GSPY--- 149
           VR        +   + + LV E +    L +++++     I  +R   +++  G  +   
Sbjct: 88  VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT 147

Query: 150 --------------------------------KAPESRIRSSVYSTPH------------ 165
                                               +    +V  TP             
Sbjct: 148 RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYD 207

Query: 166 ---DVWAVGCIFAEMVSGKP 182
              DV+A G    EM + + 
Sbjct: 208 ESVDVYAFGMCMLEMATSEY 227

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 35  MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLL 94
           M    + +Y+V+  IG G +G   K      GK +  K ++  +  E     L++ V+LL
Sbjct: 1   MPSRAE-DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLL 59

Query: 95  KELEHDNIVRLLD--VLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +EL+H NIVR  D  +  T   +Y+V EY +  DL S I K 
Sbjct: 60  RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKG 101

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 145 VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           VG+P Y +PE ++    Y+   D+W++GC+  E+ +  P F
Sbjct: 177 VGTPYYMSPE-QMNRMSYNEKSDIWSLGCLLYELCALMPPF 216

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 82.4 bits (204), Expect = 5e-19
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 26  VKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVP 84
           ++   G   +       +++ +KIG+G F EVY+   L  G  VA+K + I +       
Sbjct: 22  LRPDMGYNTLAN-----FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKAR 76

Query: 85  SYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +  I  + LLK+L H N+++          + +V E  D  DL   I+  
Sbjct: 77  ADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHF 126

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 145 VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
           VG+P Y +PE RI  + Y+   D+W++GC+  EM + +  F   K +  SL  +
Sbjct: 197 VGTPYYMSPE-RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKK 249

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 92/250 (36%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG---VS 92
           E  KD  Y +V K+G G F  V+   ++     VA+K++       G   Y  A    + 
Sbjct: 14  EPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIV------RGDKVYTEAAEDEIK 67

Query: 93  LLKEL-----------EHDNIVRLLDVLT----TGRYVYLVFEYLDLDLGSFIRKH---- 133
           LL+ +             ++I++LLD        G +V +VFE L  +L + I+K+    
Sbjct: 68  LLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRG 127

Query: 134 -TITSIRP-------------------H-------IKEVGSPYKAPESRIR-----SSVY 161
             +  ++                    H       +            +I+     ++ +
Sbjct: 128 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACW 187

Query: 162 STPH-------------------------DVWAVGCIFAEMVSGKPLFPCGK-------K 189
              H                         D+W+  C+  E+++G  LF   +        
Sbjct: 188 YDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD 247

Query: 190 DHLSLIVRYF 199
           DH++ I+   
Sbjct: 248 DHIAQIIELL 257

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLK 95
           +   +  + + + +GQG    V++  + +TG   AIK+ N  +    V    +    +LK
Sbjct: 4   QSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDV-QMREFEVLK 62

Query: 96  ELEHDNIVRLLDVL--TTGRYVYLVFEYLDL-DLGSFIRKH 133
           +L H NIV+L  +   TT R+  L+ E+     L + + + 
Sbjct: 63  KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEP 103

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 27  KKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP--EGVP 84
           K      +  +   W      ++G+G FGEV++  + +TG + A+K + ++     E   
Sbjct: 45  KLKPVDYEYREEVHW-MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEE--- 100

Query: 85  SYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
                 +     L    IV L   +  G +V +  E L
Sbjct: 101 ------LVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 145 VGSPY-KAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
            G+    APE  +         D+W+  C+   M++G  
Sbjct: 217 PGTETHMAPEV-VMGKPCDAKVDIWSSCCMMLHMLNGCH 254

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 80.7 bits (199), Expect = 4e-18
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLK 95
           +   +  + + + +GQG    V++  + +TG   AIK+ N  +    V    +    +LK
Sbjct: 4   QSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDV-QMREFEVLK 62

Query: 96  ELEHDNIVRLLDVL--TTGRYVYLVFEYLDL-DLGSFIRKH 133
           +L H NIV+L  +   TT R+  L+ E+     L + + + 
Sbjct: 63  KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEP 103

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 79.9 bits (198), Expect = 4e-18
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 21/99 (21%)

Query: 32  SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---------IQNEPEG 82
           S Q   ++   +  +E +G G F EV+      TGK  A+K I          ++NE   
Sbjct: 1   SMQTTNIRK-TFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENE--- 56

Query: 83  VPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
                   +++LK+++H+NIV L D+  +  + YLV + 
Sbjct: 57  --------IAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 80.0 bits (198), Expect = 5e-18
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 20/133 (15%)

Query: 24  KVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV 83
            +       E+  K  D  ++V    GQG FG V       TG  VAIK + IQ+     
Sbjct: 7   SLNAAAAADERSRKEMD-RFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKV-IQD----- 59

Query: 84  PSYLIAGVSLLKEL---EHDNIVRLLDVLTTGR-------YVYLVFEYLDLDLGSFIRKH 133
           P +    + ++++L    H NIV+L     T         Y+ +V EY+   L    R +
Sbjct: 60  PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNY 119

Query: 134 TITSIR---PHIK 143
               +      IK
Sbjct: 120 YRRQVAPPPILIK 132

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           Y+APE    +  Y+T  D+W+VGCIFAEM+ G+P+F  G      L  IVR
Sbjct: 197 YRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFR-GDNSAGQLHEIVR 246

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 79.6 bits (197), Expect = 7e-18
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 24/114 (21%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-QNEP-------EGVPSYLIAGVSLL 94
           +++   +G+G +G V    +  TG+ VAIK I              E         + +L
Sbjct: 13  FQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLRE---------IKIL 63

Query: 95  KELEHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           K  +H+NI+ + ++     +     VY++ E +  DL   I    ++    HI+
Sbjct: 64  KHFKHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDD--HIQ 115

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 65.3 bits (160), Expect = 9e-13
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  + S+ YS   DVW+ GCI AE+   +P+FP G+  +  L LI 
Sbjct: 188 YRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP-GRDYRHQLLLIF 236

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 79.5 bits (196), Expect = 8e-18
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 35  MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAGV 91
           + +++   Y +   IGQG +G V   +  +T    AIK++N   I+         +   V
Sbjct: 21  LLELQK-KYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEV 79

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
            L+K+L H NI RL +V    +Y+ LV E  
Sbjct: 80  RLMKKLHHPNIARLYEVYEDEQYICLVMELC 110

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAGVSLLKELEH 99
           Y++ E IG+G F  V +C+N ETG++ A+K+++     + P      L    S+   L+H
Sbjct: 26  YELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH 85

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLD 123
            +IV LL+  ++   +Y+VFE++D
Sbjct: 86  PHIVELLETYSSDGMLYMVFEFMD 109

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 78.4 bits (194), Expect = 1e-17
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLK 95
            K  D NY V E++G+G F  V +C++  TG + A K+IN +         L     + +
Sbjct: 2   TKFSD-NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60

Query: 96  ELEHDNIVRLLDVLTTGRYVYLVFEY 121
           +L+H NIVRL D +    + YLVF+ 
Sbjct: 61  KLQHPNIVRLHDSIQEESFHYLVFDL 86

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 32/122 (26%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-------EGVPSYLIAGVSLLK 95
           Y  ++ +G G  G V+  ++ +  K+VAIK I + +         E         + +++
Sbjct: 13  YMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALRE---------IKIIR 63

Query: 96  ELEHDNIVRLLDVLT--------------TGRYVYLVFEYLDLDLGSFIRKHTITSIRPH 141
            L+HDNIV++ ++L                   VY+V EY++ DL + + +  +     H
Sbjct: 64  RLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLEE--H 121

Query: 142 IK 143
            +
Sbjct: 122 AR 123

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y++P   +  + Y+   D+WA GCIFAEM++GK LF  G    + + LI+
Sbjct: 190 YRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFA-GAHELEQMQLIL 238

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 32  SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV 91
           +    +  +  Y++ E++G+G F  V +C+ +  G++ A  +IN +         L    
Sbjct: 3   TITCTRFTE-EYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREA 61

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
            + + L+H NIVRL D ++   + YL+F+ 
Sbjct: 62  RICRLLKHPNIVRLHDSISEEGHHYLIFDL 91

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 32  SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV 91
           + +   + +  Y+ V+K+G G +GEV  C +  T  + AIK+I   +      S L+  V
Sbjct: 29  TSKKGHLSE-MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEV 87

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
           ++LK L+H NI++L D     R  YLV E 
Sbjct: 88  AVLKLLDHPNIMKLYDFFEDKRNYYLVMEC 117

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 79.0 bits (194), Expect = 2e-17
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            +++ E++G G FG V + ++ +TG++VAIK    +  P+         + ++K+L H N
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRER-WCLEIQIMKKLNHPN 73

Query: 102 IVRLLDV------LTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +V   +V      L       L  EY +  DL  ++ + 
Sbjct: 74  VVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQF 112

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 32  SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV 91
           + + +KV+D  Y + E++G G F  V KC    TG + A K I  +             +
Sbjct: 4   TFKQQKVED-FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEI 62

Query: 92  ----SLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
               S+L+++ H NI+ L DV      V L+ E +
Sbjct: 63  EREVSILRQVLHPNIITLHDVYENRTDVVLILELV 97

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 78.7 bits (194), Expect = 3e-17
 Identities = 34/219 (15%), Positives = 63/219 (28%), Gaps = 81/219 (36%)

Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---------IQNEPEGVP 84
           + + V D +Y + E++G G FG V++     TG   A K +          ++ E     
Sbjct: 151 KHDHVLD-HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKE----- 204

Query: 85  SYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV---------FEYLDLDLGSFIRKHTI 135
                 +  +  L H  +V L D       + ++         FE +  +         +
Sbjct: 205 ------IQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAV 258

Query: 136 TSIR-------------------------------PHIK------------------EVG 146
             +R                                 +K                    G
Sbjct: 259 EYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTG 318

Query: 147 SP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           +  + APE            D+W+VG +   ++SG   F
Sbjct: 319 TAEFAAPEV-AEGKPVGYYTDMWSVGVLSYILLSGLSPF 356

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
               K  D NY V E++G+G F  V +C++  TG + A K+IN +         L     
Sbjct: 22  NASTKFSD-NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR 80

Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
           + ++L+H NIVRL D +    + YLVF+ 
Sbjct: 81  ICRKLQHPNIVRLHDSIQEESFHYLVFDL 109

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 29/81 (35%), Positives = 47/81 (58%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y +V  +G+G FGEV KC +  T ++ A+K+IN  +      S ++  V LLK+L+H N
Sbjct: 23  RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN 82

Query: 102 IVRLLDVLTTGRYVYLVFEYL 122
           I++L ++L      Y+V E  
Sbjct: 83  IMKLFEILEDSSSFYIVGELY 103

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
                KIG+G  G V       +G++VA+KM++++ +       L   V ++++ +H N+
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQR--RELLFNEVVIMRDYQHFNV 104

Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           V +      G  ++++ E+L 
Sbjct: 105 VEMYKSYLVGEELWVLMEFLQ 125

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHD 100
            +  +EKIG G FG V+KC+    G   AIK               +  V     L +H 
Sbjct: 12  EFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHS 71

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           ++VR         ++ +  EY +   L   I ++
Sbjct: 72  HVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 105

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 144 EVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG 187
           E G   + A E    +  +    D++A+          +PL   G
Sbjct: 190 EEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG 234

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIA 89
           GS+   +VK  +Y + + +G G FG+V    +  TG KVA+K++N Q      V   +  
Sbjct: 1   GSKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKR 60

Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
            +  LK   H +I++L  V++T    ++V EY
Sbjct: 61  EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEY 92

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 76.5 bits (189), Expect = 5e-17
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI-------QNEPEGV 83
           GS       + NY+  E +G+GV   V +C++  T K+ A+K+I++         E + +
Sbjct: 8   GSHSTHGFYE-NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQEL 66

Query: 84  PSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEY 121
               +  V +L+++  H NI++L D   T  + +LVF+ 
Sbjct: 67  REATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDL 105

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 77.0 bits (190), Expect = 5e-17
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHD 100
           +++ + ++G G +GEV+K  + E G+  A+K            +  +A V   +++ +H 
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
             VRL      G  +YL  E     L       
Sbjct: 118 CCVRLEQAWEEGGILYLQTELCGPSLQQHCEAW 150

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 144 EVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH 191
           + G P Y APE  +    Y T  DV+++G    E+     L   G+   
Sbjct: 216 QEGDPRYMAPE--LLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQ 262

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 77.5 bits (191), Expect = 5e-17
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 21/108 (19%)

Query: 23  YKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN------- 75
           +K         +   V D  Y ++E++G G FG V++C+   TG+    K IN       
Sbjct: 34  WKKYVPQPVEVKQGSVYD-YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDK 92

Query: 76  --IQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
             ++NE           +S++ +L H  ++ L D       + L+ E+
Sbjct: 93  YTVKNE-----------ISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 76.6 bits (189), Expect = 5e-17
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ NI
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNI 79

Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           V  LD    G  +++V EYL 
Sbjct: 80  VNYLDSYLVGDELWVVMEYLA 100

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 76.5 bits (189), Expect = 7e-17
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV---- 91
           +KV+D  Y + E++G G F  V KC    TG + A K I  +             +    
Sbjct: 8   QKVED-FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREV 66

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
           S+L+++ H N++ L DV      V L+ E 
Sbjct: 67  SILRQVLHHNVITLHDVYENRTDVVLILEL 96

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 77.4 bits (191), Expect = 7e-17
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 27  KKTNGSEQMEKVKDWN--YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVP 84
             ++G E +     +   Y +V  +G+G FGEV KC +  T ++ A+K+IN  +      
Sbjct: 6   HHSSGRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDT 65

Query: 85  SYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
           S ++  V LLK+L+H NI++L ++L      Y+V E  
Sbjct: 66  STILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELY 103

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 76.2 bits (188), Expect = 9e-17
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           +++V ++G G FG+VYK  N ETG   A K+I  ++E E      I  + +L   +H  I
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEE--LEDYIVEIEILATCDHPYI 78

Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
           V+LL        ++++ E+  
Sbjct: 79  VKLLGAYYHDGKLWIMIEFCP 99

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV-- 91
           + E V D  Y   E++G G F  V KC    TG + A K I  +             +  
Sbjct: 5   RQENVDD-YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63

Query: 92  --SLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
             S+LKE++H N++ L +V      V L+ E +
Sbjct: 64  EVSILKEIQHPNVITLHEVYENKTDVILILELV 96

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 26  VKKTNGSEQMEKVKDWNYKVVEK-----IGQGVFGEVYKCLNLETGKKVAIKMINIQNEP 80
           ++ T   +    + +++Y+  E      +G+G +G VY   +L    ++AIK I  ++  
Sbjct: 2   MRSTEEGDCESDLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSR 61

Query: 81  EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
              P  L   ++L K L+H NIV+ L   +   ++ +  E 
Sbjct: 62  YSQP--LHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ 100

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 145 VGSPY-KAPESRIRSSV--YSTPHDVWAVGCIFAEMVSGKP 182
            G+    APE  I      Y    D+W++GC   EM +GKP
Sbjct: 184 TGTLQYMAPEI-IDKGPRGYGKAADIWSLGCTIIEMATGKP 223

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 20/94 (21%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--------IQNEPEGVPSYL 87
           +++ +  Y + E +G+G FG V++C+   + K    K +         ++ E        
Sbjct: 1   KELYE-KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKE-------- 51

Query: 88  IAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
              +S+L    H NI+ L +   +   + ++FE+
Sbjct: 52  ---ISILNIARHRNILHLHESFESMEELVMIFEF 82

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV----SLLKEL 97
           +Y++ E++G G F  V KC    TGK+ A K I  +             +    ++L+E+
Sbjct: 6   HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI 65

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H NI+ L D+      V L+ E 
Sbjct: 66  RHPNIITLHDIFENKTDVVLILEL 89

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG-VSLLKELEHDN 101
           +  + +IG G FG VY   ++   + VAIK ++   +        I   V  L++L H N
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115

Query: 102 IVRLLDVLTTGRYVYLVFEYL 122
            ++           +LV EY 
Sbjct: 116 TIQYRGCYLREHTAWLVMEYC 136

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 24/115 (20%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN-IQNEP-------EGVPSYLIAGVSL 93
            Y  +  IG+G +G V    +     +VAIK I+  +++        E         + +
Sbjct: 28  RYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLRE---------IKI 78

Query: 94  LKELEHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           L    H+NI+ + D++          VY+V + ++ DL   ++   +++   HI 
Sbjct: 79  LLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSND--HIC 131

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  + S  Y+   D+W+VGCI AEM+S +P+FP GK   D L+ I+
Sbjct: 197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP-GKHYLDQLNHIL 245

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 76.7 bits (189), Expect = 1e-16
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 23/105 (21%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEP-------EGVPSYLIAGVS 92
           NY +   IG+G +G VY   +  T K VAIK +N   ++         E         ++
Sbjct: 27  NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILRE---------IT 77

Query: 93  LLKELEHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRK 132
           +L  L+ D I+RL D++          +Y+V E  D DL    + 
Sbjct: 78  ILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKT 122

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 11/48 (22%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG-----------KPLFP 185
           Y+APE  +    Y+   D+W+ GCIFAE+++             PLFP
Sbjct: 217 YRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFP 264

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           ++ +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L H+N
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKMLNHEN 66

Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           +V+       G   YL  EY
Sbjct: 67  VVKFYGHRREGNIQYLFLEY 86

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV----SLLKEL 97
            Y+V   +G G FG VY  + +     VAIK +      +         V     LLK++
Sbjct: 44  QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 103

Query: 98  EHD--NIVRLLDVLTTGRYVYLVFEYLDL--DLGSFIRKH 133
                 ++RLLD         L+ E  +   DL  FI + 
Sbjct: 104 SSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER 143

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 35  MEKVKDW--NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGV 91
           M   K     Y + E +G+G FG+V    + +T +KVA+K I+ Q  +   +   +   +
Sbjct: 1   MAISKRHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREI 60

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           S LK L H +I++L DV+TT   + +V EY   +L  +I + 
Sbjct: 61  SYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGGELFDYIVEK 102

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           ++ +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L H+N
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKMLNHEN 66

Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           +V+       G   YL  EY
Sbjct: 67  VVKFYGHRREGNIQYLFLEY 86

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG-V 91
                  D  YK    +G+G FGEV  C +  TG++ A+K+I+ +   +      +   V
Sbjct: 19  HSTAIFSD-RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREV 77

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
            LLK+L+H NI++L +      Y YLV E 
Sbjct: 78  QLLKQLDHPNIMKLYEFFEDKGYFYLVGEV 107

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 23/120 (19%)

Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG 90
           G+  ++K    ++K +E IG G FG+V+K  +   GK   IK +   NE           
Sbjct: 1   GAHTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNE------KAERE 54

Query: 91  VSLLKELEHDNIVRLLD----------------VLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           V  L +L+H NIV                      +  + +++  E+ D   L  +I K 
Sbjct: 55  VKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKR 114

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI------QNEPEGVPSYLIAGVSLLK 95
            Y   + IG+GV   V +C++  TG + A+K++ +        + E V         +L+
Sbjct: 95  KYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILR 154

Query: 96  EL-EHDNIVRLLDVLTTGRYVYLVFEY 121
           ++  H +I+ L+D   +  +++LVF+ 
Sbjct: 155 QVAGHPHIITLIDSYESSSFMFLVFDL 181

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 75.2 bits (185), Expect = 3e-16
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 44/137 (32%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLK 95
            +     Y + + +G G FG V +  ++E+GK+ A+K +         P Y    + ++K
Sbjct: 2   LETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD------PRYKNRELDIMK 55

Query: 96  ELEHDNIVRLLDVLTTG--------------------------------------RYVYL 117
            L+H NI++L+D   T                                       +Y+ +
Sbjct: 56  VLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNV 115

Query: 118 VFEYLDLDLGSFIRKHT 134
           + EY+   L   ++   
Sbjct: 116 IMEYVPDTLHKVLKSFI 132

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK--DHLSLIVR 197
           Y+APE  + ++ Y+   D+W++GC+F E++ GKPLF  G+   D L  I++
Sbjct: 207 YRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFS-GETSIDQLVRIIQ 256

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 74.9 bits (184), Expect = 4e-16
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 43  YKVVEKIGQGV--FGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+++  IG+G      V       TG+ V ++ IN++     + ++L   + + K   H 
Sbjct: 27  YELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHP 86

Query: 101 NIVRLLDVLTTGRYVYLVFEYLD 123
           NIV           +++V  ++ 
Sbjct: 87  NIVPYRATFIADNELWVVTSFMA 109

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            + V+EK+G+G +G VYK ++ ETG+ VAIK + ++++ + +    I  +S++++ +  +
Sbjct: 30  VFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEI----IKEISIMQQCDSPH 85

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           +V+          +++V EY  
Sbjct: 86  VVKYYGSYFKNTDLWIVMEYCG 107

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 23  YKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG 82
           +  +   + S   + ++D  Y + + +G G  GEV      +T KKVAI++I+ +    G
Sbjct: 118 FFDLTVDDQSVYPKALRD-EYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIG 176

Query: 83  VPSYLIAG------VSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
                         + +LK+L H  I+++ +        Y+V E 
Sbjct: 177 SAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-EDYYIVLEL 220

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           +  +EKIG+G FGEV+K ++  T K VAIK+I+++   + +   +   +++L + +   +
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEI-EDIQQEITVLSQCDSPYV 82

Query: 103 VRLLDVLTTGRYVYLVFEYLD 123
            +          ++++ EYL 
Sbjct: 83  TKYYGSYLKDTKLWIIMEYLG 103

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           NY++++ IG+G F +V    ++ TG++VAIK+I+           L   V ++K L H N
Sbjct: 16  NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN 75

Query: 102 IVRLLDVLTTGRYVYLVFEY 121
           IV+L +V+ T + +YL+ EY
Sbjct: 76  IVKLFEVIETEKTLYLIMEY 95

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K +  +G+G FG+V        N  TG+ VA+K +   +      S     + +L+ L H
Sbjct: 34  KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALK-ADAGPQHRSGWKQEIDILRTLYH 92

Query: 100 DNIVRLLDVLTTGRY--VYLVFEYLDL-DLGSFIRKHTITSIR 139
           ++I++            + LV EY+ L  L  ++ +H+I   +
Sbjct: 93  EHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQ 135

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 73.8 bits (182), Expect = 5e-16
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 27  KKTNGSEQMEKVKDWN--YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVP 84
             ++G E +      +  +    K+G G FG+V+      +G +  IK IN       + 
Sbjct: 6   HHSSGRENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPME 65

Query: 85  SYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
             + A + +LK L+H NI+++ +V      +Y+V E 
Sbjct: 66  Q-IEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 74.7 bits (184), Expect = 5e-16
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 23/113 (20%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEP-------EGVPSYLIAGVSL 93
           Y++V+K+G+G +G V+K ++  TG+ VA+K I    QN         E         + +
Sbjct: 11  YELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFRE---------IMI 61

Query: 94  LKEL-EHDNIVRLLDVLTTGRY--VYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           L EL  H+NIV LL+VL       VYLVF+Y++ DL + IR + +  +  H +
Sbjct: 62  LTELSGHENIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRANILEPV--HKQ 112

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  + S+ Y+   D+W++GCI  E++ GKP+FP G    + L  I+
Sbjct: 196 YRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP-GSSTMNQLERII 244

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 74.7 bits (184), Expect = 6e-16
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 16  KKVKDCCYKVVKKTNGS---EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIK 72
              ++  ++ +    G    ++  K+ + +Y  V K+G G +GEV  C       + AIK
Sbjct: 9   SGRENLYFQGIAINPGMYVRKKEGKIGE-SYFKVRKLGSGAYGEVLLCKEKNGHSEKAIK 67

Query: 73  MIN---IQNEPEGVPSYLIAG--------VSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
           +I             +  I          +SLLK L+H NI++L DV    +Y YLV E+
Sbjct: 68  VIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEF 127

Query: 122 LD 123
            +
Sbjct: 128 YE 129

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 74.0 bits (182), Expect = 6e-16
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAG---VSLLK 95
            Y  +  +G G FG V+  ++ E  K+V +K I    +  +       L      +++L 
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILS 84

Query: 96  ELEHDNIVRLLDVLTTGRYVYLVFEYLD--LDLGSFIRKH 133
            +EH NI+++LD+     +  LV E     LDL +FI +H
Sbjct: 85  RVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH 124

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 73.9 bits (182), Expect = 6e-16
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 32  SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN------IQNEPEGVPS 85
           S   + ++D  Y + + +G G  GEV      +T KKVAIK+I+                
Sbjct: 2   SVYPKALRD-EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPAL 60

Query: 86  YLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
            +   + +LK+L H  I+++ +        Y+V E 
Sbjct: 61  NVETEIEILKKLNHPCIIKIKNFFDA-EDYYIVLEL 95

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 73.9 bits (182), Expect = 7e-16
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 37  KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
            + + +Y  ++K+G+G F  V     L  G   A+K I    + +           + + 
Sbjct: 25  IIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQD--REEAQREADMHRL 82

Query: 97  LEHDNIVRLLDV----LTTGRYVYLVFEYLDL-DLGSFIRKH 133
             H NI+RL+             +L+  +     L + I + 
Sbjct: 83  FNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERL 124

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV----SLLKEL 97
            Y++   +G+G FG V+    L    +VAIK+I         P           +LL ++
Sbjct: 32  EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKV 91

Query: 98  ----EHDNIVRLLDVLTTGRYVYLVFEYLD--LDLGSFIRKH 133
                H  ++RLLD   T     LV E      DL  +I + 
Sbjct: 92  GAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK 133

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 73.0 bits (180), Expect = 9e-16
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 21/96 (21%)

Query: 35  MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---------IQNEPEGVPS 85
              +    Y +   IG+G +GEV   +   T  + A K I           + E      
Sbjct: 4   KGDINQ-YYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQE------ 56

Query: 86  YLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
                + ++K L+H NI+RL +       +YLV E 
Sbjct: 57  -----IEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 16/95 (16%)

Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN-----IQNEPEGVPSYL 87
               +  D  Y+V E IG G +    +C++  T  + A+K+I+        E E      
Sbjct: 15  RNSIQFTD-GYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIE------ 67

Query: 88  IAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
                LL+  +H NI+ L DV   G+YVY+V E +
Sbjct: 68  ----ILLRYGQHPNIITLKDVYDDGKYVYVVTELM 98

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +++ +  +GQG FG+V K  N    +  AIK I    E     S +++ V LL  L H  
Sbjct: 7   DFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKL---STILSEVMLLASLNHQY 63

Query: 102 IVRLLDV-------------LTTGRYVYLVFEYLD-LDLGSFIRKH 133
           +VR                 +     +++  EY +   L   I   
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSE 109

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
              + IG G FGEVYK  L   +GK    VAIK +      E      +    ++ +  H
Sbjct: 47  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK-AGYTEKQRVDFLGEAGIMGQFSH 105

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            NI+RL  V++  + + ++ EY++   L  F+R+ 
Sbjct: 106 HNIIRLEGVISKYKPMMIITEYMENGALDKFLREK 140

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSL 93
             + + D  ++V  ++G+G    VY+C    T K  A+K++    + + V +     + +
Sbjct: 47  NRDALSD-FFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTE----IGV 101

Query: 94  LKELEHDNIVRLLDVLTTGRYVYLVFEY 121
           L  L H NI++L ++  T   + LV E 
Sbjct: 102 LLRLSHPNIIKLKEIFETPTEISLVLEL 129

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           +Y + + +G G FG+V    +  TG KVA+K++N Q      V   +   +  LK   H 
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76

Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
           +I++L  V++T   +++V EY
Sbjct: 77  HIIKLYQVISTPSDIFMVMEY 97

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 19/88 (21%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--------IQNEPEGVPSYLIAGVSL 93
            Y  V+ IG G FG      +  T + VA+K I         +Q E           +  
Sbjct: 21  RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQRE-----------IIN 69

Query: 94  LKELEHDNIVRLLDVLTTGRYVYLVFEY 121
            + L H NIVR  +V+ T  ++ ++ EY
Sbjct: 70  HRSLRHPNIVRFKEVILTPTHLAIIMEY 97

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 13/119 (10%)

Query: 44  KVVEKIGQGVFGEVYKCL--NLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
            +  ++G+G FG+V+     NL   +    VA+K +   +E             LL  L+
Sbjct: 44  VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESA--RQDFQREAELLTMLQ 101

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPESRI 156
           H +IVR   V T GR + +VFEY+   DL  F+R H      P  K +          +
Sbjct: 102 HQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSH-----GPDAKLLAGGEDVAPGPL 155

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 23/103 (22%)

Query: 32  SEQMEKVKDWNYKV--VEKIGQGVFGEVYKCLNLETGKKVAIKMIN---------IQNEP 80
           + +   V    Y V   E +G G FG+V+KC    TG K+A K+I          ++NE 
Sbjct: 79  TAKQGAVNS-FYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNE- 136

Query: 81  EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD 123
                     +S++ +L+H N+++L D   +   + LV EY+D
Sbjct: 137 ----------ISVMNQLDHANLIQLYDAFESKNDIVLVMEYVD 169

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y++ E IG G    V         +KVAIK IN++     +   L+  +  + +  H N
Sbjct: 16  DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSM-DELLKEIQAMSQCHHPN 74

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           IV           ++LV + L 
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLS 96

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 44  KVVEKIGQGVFGEVYKCL--NLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
            +  ++G+G FG+V+     NL   K    VA+K +                  LL  L+
Sbjct: 18  VLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAA--RKDFQREAELLTNLQ 75

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           H++IV+   V   G  + +VFEY+   DL  F+R H
Sbjct: 76  HEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAH 111

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 6/85 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAGVSLLKELE 98
            Y + + +G+G +G+V + L+ ET  + A+K++    ++  P G  + +   + LL+ L 
Sbjct: 6   KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEAN-VKKEIQLLRRLR 64

Query: 99  HDNIVRLLDVLT--TGRYVYLVFEY 121
           H N+++L+DVL     + +Y+V EY
Sbjct: 65  HKNVIQLVDVLYNEEKQKMYMVMEY 89

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K +  +G+G FG+V  C        TG++VA+K +          + L   + +L+ L H
Sbjct: 24  KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLK-PESGGNHIADLKKEIEILRNLYH 82

Query: 100 DNIVRLLDVLTT--GRYVYLVFEYLDL-DLGSFIRKH 133
           +NIV+   + T   G  + L+ E+L    L  ++ K+
Sbjct: 83  ENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN 119

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
            + + +G G FGEV    L L + K+  VAIK + +    +    +L    S++ + +H 
Sbjct: 48  SIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFL-GEASIMGQFDHP 106

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           NI+RL  V+T  + V +V EY++   L SF+RKH
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH 140

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDN 101
            +  K+G G +GEVY+ +  +    VA+K +      E        +   +++KE++H N
Sbjct: 16  TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEIKHPN 70

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +V+LL V T     Y++ E++   +L  ++R+ 
Sbjct: 71  LVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 103

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 72.0 bits (177), Expect = 5e-15
 Identities = 29/115 (25%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS---------L 93
           Y V   I  G +G V   ++   G  VAIK +          + L              L
Sbjct: 24  YTVQRFISSGSYGAVCAGVD-SEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRL 82

Query: 94  LKELEHDNIVRLLDVLTTGRY-----VYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           L    H NI+ L D+           +YLV E +  DL   I    I     HI+
Sbjct: 83  LNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQ 137

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  ++   ++   D+W+ GC+ AEM + K LF  G    + L+ IV
Sbjct: 199 YRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFR-GSTFYNQLNKIV 247

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 18/87 (20%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN------IQNEPEGVPSYLIAGVSLLKE 96
               + +G+G F    KC++ ++ +  A+K+I+       Q E           ++ LK 
Sbjct: 13  DLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKE-----------ITALKL 61

Query: 97  L-EHDNIVRLLDVLTTGRYVYLVFEYL 122
              H NIV+L +V     + +LV E L
Sbjct: 62  CEGHPNIVKLHEVFHDQLHTFLVMELL 88

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 24/106 (22%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEP-------EGVPSYLIAGVS 92
            Y     +G G +G V   ++  +G+KVAIK ++   Q+E        E         + 
Sbjct: 25  TYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRE---------LL 75

Query: 93  LLKELEHDNIVRLLDVLT------TGRYVYLVFEYLDLDLGSFIRK 132
           LLK ++H+N++ LLDV T           YLV  ++  DL   +  
Sbjct: 76  LLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGL 121

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  +    Y+   D+W+VGCI AEM++GK LF  GK   D L+ I+
Sbjct: 189 YRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFK-GKDYLDQLTQIL 237

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDN 101
             V++IG G FG V+         KVAIK I      EG  S    I    ++ +L H  
Sbjct: 11  TFVQEIGSGQFGLVHLGY-WLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSHPK 64

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +V+L  V      + LV E+++   L  ++R  
Sbjct: 65  LVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQ 97

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 71.5 bits (176), Expect = 5e-15
 Identities = 18/92 (19%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 33  EQMEKVKDWNYKVV-EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV 91
           + ME   +  Y +  +++G+G F  V +C++  TG++ A K +  +   +   + ++  +
Sbjct: 21  QSMENFNN-FYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEI 79

Query: 92  SLLKELEHD-NIVRLLDVLTTGRYVYLVFEYL 122
           ++L+  +    ++ L +V      + L+ EY 
Sbjct: 80  AVLELAKSCPRVINLHEVYENTSEIILILEYA 111

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 71.2 bits (175), Expect = 6e-15
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
            + + IG G  GEV        G+    VAIK +           +L +  S++ + +H 
Sbjct: 52  HIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFL-SEASIMGQFDHP 110

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           NI+RL  V+T GR   +V EY++   L +F+R H
Sbjct: 111 NIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTH 144

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 70.7 bits (174), Expect = 6e-15
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDN 101
             ++++G G FG V           VAIKMI      EG  S    I    ++  L H+ 
Sbjct: 27  TFLKELGTGQFGVVKYGK-WRGQYDVAIKMIK-----EGSMSEDEFIEEAKVMMNLSHEK 80

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +V+L  V T  R ++++ EY+    L +++R+ 
Sbjct: 81  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREM 113

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 71.8 bits (176), Expect = 7e-15
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 24/106 (22%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEP-------EGVPSYLIAGVSL 93
           Y+ ++ IG G  G V    +    + VAIK ++   QN+        E         + L
Sbjct: 64  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRE---------LVL 114

Query: 94  LKELEHDNIVRLLDVLT------TGRYVYLVFEYLDLDLGSFIRKH 133
           +K + H NI+ LL+V T        + VYLV E +D +L   I+  
Sbjct: 115 MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQME 160

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  I    Y    D+W+VGCI  EMV  K LFP G+   D  + ++
Sbjct: 229 YRAPEV-ILGMGYKENVDIWSVGCIMGEMVRHKILFP-GRDYIDQWNKVI 276

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 71.7 bits (176), Expect = 7e-15
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDN 101
            +  K+G G +GEVY+ +  +    VA+K +      E        +   +++KE++H N
Sbjct: 223 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEIKHPN 277

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +V+LL V T     Y++ E++   +L  ++R+ 
Sbjct: 278 LVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 310

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K + ++G+G FG V  C    L   TG  VA+K   +Q+            + +LK L  
Sbjct: 26  KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQ--LQHSGPDQQRDFQREIQILKALHS 83

Query: 100 DNIVRLLDV--LTTGRYVYLVFEYLDL-DLGSFIRKH 133
           D IV+   V      + + LV EYL    L  F+++H
Sbjct: 84  DFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH 120

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 71.3 bits (175), Expect = 8e-15
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 24/106 (22%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEP-------EGVPSYLIAGVSL 93
           Y+ ++ IG G  G V    +    + VAIK ++   QN+        E         + L
Sbjct: 27  YQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRE---------LVL 77

Query: 94  LKELEHDNIVRLLDVLT------TGRYVYLVFEYLDLDLGSFIRKH 133
           +K + H NI+ LL+V T        + VY+V E +D +L   I+  
Sbjct: 78  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQME 123

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  I    Y    D+W+VGCI  EM+ G  LFP G    D  + ++
Sbjct: 192 YRAPEV-ILGMGYKENVDIWSVGCIMGEMIKGGVLFP-GTDHIDQWNKVI 239

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 43  YKVVEK-IGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HD 100
           Y++ E  +G+G    V  C+NL T ++ A+K+I  Q  P  + S +   V +L + + H 
Sbjct: 14  YQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ--PGHIRSRVFREVEMLYQCQGHR 71

Query: 101 NIVRLLDVLTTGRYVYLVFEYL 122
           N++ L++        YLVFE +
Sbjct: 72  NVLELIEFFEEEDRFYLVFEKM 93

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELEHD 100
           Y+ ++ +G G +G V   ++  TG KVAIK +    Q+E     +Y    + LLK + H+
Sbjct: 27  YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAY--RELRLLKHMRHE 84

Query: 101 NIVRLLDVLT------TGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           N++ LLDV T           YLV  ++  DLG  ++   +      I+
Sbjct: 85  NVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGED--RIQ 131

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  +    Y+   D+W+VGCI AEM++GK LF  G    D L  I+
Sbjct: 191 YRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFK-GSDHLDQLKEIM 239

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 44  KVVEKIGQGVFGEVYKCL--NLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           + V  IG+G FG V++     L   +    VA+KM+  +     + +      +L+ E +
Sbjct: 50  EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK-EEASADMQADFQREAALMAEFD 108

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPESRIR 157
           + NIV+LL V   G+ + L+FEY+   DL  F+R        PH     S          
Sbjct: 109 NPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSM-----SPHTVCSLSHSDLSTRARV 163

Query: 158 SSVYSTP 164
           SS    P
Sbjct: 164 SSPGPPP 170

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           K ++++G+G FG V  C    L   TG+ VA+K   +Q+  E         + +LK L+H
Sbjct: 44  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKK--LQHSTEEHLRDFEREIEILKSLQH 101

Query: 100 DNIVRLLDVLTTGRY--VYLVFEYLDL-DLGSFIRKH 133
           DNIV+   V  +     + L+ EYL    L  +++KH
Sbjct: 102 DNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 138

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
              E +G+G FG+  K  + ETG+ + +K   +    E      +  V +++ LEH N++
Sbjct: 13  IHGEVLGKGCFGQAIKVTHRETGEVMVMKE--LIRFDEETQRTFLKEVKVMRCLEHPNVL 70

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           + + VL   + +  + EY+    L   I+  
Sbjct: 71  KFIGVLYKDKRLNFITEYIKGGTLRGIIKSM 101

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 44  KVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
            +  ++GQG FG VY+      +  E   +VAIK +N +          +   S++KE  
Sbjct: 28  TMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN-EAASMRERIEFLNEASVMKEFN 86

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
             ++VRLL V++ G+   ++ E +   DL S++R  
Sbjct: 87  CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL 122

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAGVSLLKELE 98
            Y     +G+G F + ++  + +T +  A K++    +          +   +S+ + L 
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLA 73

Query: 99  HDNIVRLLDVLTTGRYVYLVFEY 121
           H ++V          +V++V E 
Sbjct: 74  HQHVVGFHGFFEDNDFVFVVLEL 96

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 27  KKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN------IQNEP 80
              +    +  V   ++   + +G G  G +     +   + VA+K I          E 
Sbjct: 10  DDGDEETSVVIVGKISFCPKDVLGHGAEGTIV-YRGMFDNRDVAVKRILPECFSFADRE- 67

Query: 81  EGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
                     V LL+E  EH N++R        ++ Y+  E     L  ++ + 
Sbjct: 68  ----------VQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQK 111

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 122 LDLDLGSFIRKHTITSIRPHIKEVGSP-YKAPE--SRIRSSVYSTPHDVWAVGCIFAEMV 178
           L +   SF R+  +          G+  + APE  S       +   D+++ GC+F  ++
Sbjct: 173 LAVGRHSFSRRSGV---------PGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVI 223

Query: 179 S-GKPLF 184
           S G   F
Sbjct: 224 SEGSHPF 230

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 44  KVVEKIGQGVFGEVYKC----LNLETGKKVAIKMINIQNEPEGVPSY---LIAGVSLLKE 96
           K ++++G+G FG V  C    L   TG+ VA+K +           +       + +LK 
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ-----HSTEEHLRDFEREIEILKS 67

Query: 97  LEHDNIVRLLDVLTTGRY--VYLVFEYLDL-DLGSFIRKH 133
           L+HDNIV+   V  +     + L+ EYL    L  +++KH
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH 107

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
            + E+IG+G FGEV+          VA+K       P+    +L     +LK+  H NIV
Sbjct: 117 VLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFL-QEARILKQYSHPNIV 175

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           RL+ V T  + +Y+V E +   D  +F+R  
Sbjct: 176 RLIGVCTQKQPIYIVMELVQGGDFLTFLRTE 206

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 15/117 (12%)

Query: 32  SEQMEKVKDW-----NYKVVEKIGQGVFGEVYKCL---NLETGKKVAIKMINIQNEPEGV 83
            E  EK++D       + +   +G+G FG V +        +  KVA+KM+         
Sbjct: 9   DELKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSD 68

Query: 84  PSYLIAGVSLLKELEHDNIVRLLDVLTTGR------YVYLVFEYLDL-DLGSFIRKH 133
               +   + +KE +H ++ +L+ V    R         ++  ++   DL +F+   
Sbjct: 69  IEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLAS 125

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query: 32  SEQMEKVKDW-----NYKVVEKIGQGVFGEVYKCL---NLETGKKVAIKMINIQNEPEGV 83
            E   K++D         + + +G+G FG V +        T  KVA+K + + N  +  
Sbjct: 20  EELQNKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQRE 79

Query: 84  PSYLIAGVSLLKELEHDNIVRLLDVLTTGR-----YVYLVFEYLDL-DLGSFIRKH 133
               ++  + +K+  H N++RLL V             ++  ++   DL +++   
Sbjct: 80  IEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYS 135

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY--LIAGVSLLKELEHDN 101
            +++++G G FG V      +    VA+KMI      EG  S          + +L H  
Sbjct: 11  TLLKELGSGQFGVVKLGK-WKGQYDVAVKMIK-----EGSMSEDEFFQEAQTMMKLSHPK 64

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +V+   V +    +Y+V EY+    L +++R H
Sbjct: 65  LVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSH 97

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAGVSLLKELE 98
            Y     +G+G F + ++  + +T +  A K++    +          +   +S+ + L 
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLK--PHQREKMSMEISIHRSLA 99

Query: 99  HDNIVRLLDVLTTGRYVYLVFEY 121
           H ++V          +V++V E 
Sbjct: 100 HQHVVGFHGFFEDNDFVFVVLEL 122

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +++ ++ +G+G FG V++  N       AIK I + N        ++  V  L +LEH  
Sbjct: 6   DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAR-EKVMREVKALAKLEHPG 64

Query: 102 IVRLLDV------------LTTGRYVYLVFEYLD-LDLGSFIRKHTITSIRP 140
           IVR  +              +   Y+Y+  +     +L  ++        R 
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERE 116

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 141 HIKEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
           H  +VG+  Y +PE +I  + YS   D++++G I  E+     L+P   +      + 
Sbjct: 187 HTGQVGTKLYMSPE-QIHGNSYSHKVDIFSLGLILFEL-----LYPFSTQMERVRTLT 238

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 44  KVVEKIGQGVFGEVYKCL--NLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
            ++  +G G FGEVY+     +       +VA+K +  +   E      +    ++ +  
Sbjct: 33  TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP-EVCSEQDELDFLMEALIISKFN 91

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKE 144
           H NIVR + V       +++ E +   DL SF+R+      RP   +
Sbjct: 92  HQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRET-----RPRPSQ 133

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 44  KVVEKIGQGVFGEVYKCL--NLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           + +E++G+  FG+VYK        G+    VAIK +        +         L   L+
Sbjct: 12  RFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLK-DKAEGPLREEFRHEAMLRARLQ 70

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           H N+V LL V+T  + + ++F Y    DL  F+   
Sbjct: 71  HPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMR 106

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 68.3 bits (168), Expect = 4e-14
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           ++KV   +G+G F  VY+  ++ TG +VAIKMI+ +     G+   +   V +  +L+H 
Sbjct: 12  DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHP 71

Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
           +I+ L +      YVYLV E 
Sbjct: 72  SILELYNYFEDSNYVYLVLEM 92

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 44  KVVEKIGQGVFGEVYKCL--NLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
            ++  +G G FGEVY+     +       +VA+K +  +   E      +    ++ +  
Sbjct: 74  TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP-EVCSEQDELDFLMEALIISKFN 132

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKE 144
           H NIVR + V       +++ E +   DL SF+R+      RP   +
Sbjct: 133 HQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRET-----RPRPSQ 174

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 32  SEQMEKVKDW-------NYKVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPE 81
           S  + +VKD               IG+G FG VY    ++  +   + AIK ++ +    
Sbjct: 5   SALLAEVKDVLIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLS-RITEM 63

Query: 82  GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-YVYLVFEYLDL-DLGSFIRKH 133
                 +    L++ L H N++ L+ ++       +++  Y+   DL  FIR  
Sbjct: 64  QQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSP 117

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 26/116 (22%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEP-------EGVPSYLIAGVSL 93
           Y+ +  +G G +G V    + +TG +VA+K ++   Q+         E         + L
Sbjct: 31  YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE---------LRL 81

Query: 94  LKELEHDNIVRLLDVLT------TGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIK 143
           LK ++H+N++ LLDV T          VYLV   +  DL + ++   +T    H++
Sbjct: 82  LKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDD--HVQ 135

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIV 196
           Y+APE  +    Y+   D+W+VGCI AE+++G+ LFP G    D L LI+
Sbjct: 195 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFP-GTDHIDQLKLIL 243

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 68.0 bits (167), Expect = 6e-14
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+++ IG+G FG+V        G KVA+K I      +      +A  S++ +L H N+V
Sbjct: 24  KLLQTIGKGEFGDVMLGD--YRGNKVAVKCIK----NDATAQAFLAEASVMTQLRHSNLV 77

Query: 104 RLLDVLTTGR-YVYLVFEYLDL-DLGSFIRKH 133
           +LL V+   +  +Y+V EY+    L  ++R  
Sbjct: 78  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR 109

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 21/92 (22%)

Query: 42  NYKVVEK-IGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIAGVSLLKE 96
           +YKV  + +G G+ G+V +  N  T +K A+KM+      + E           V L   
Sbjct: 62  DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARRE-----------VELHWR 110

Query: 97  L-EHDNIVRLLDV----LTTGRYVYLVFEYLD 123
             +  +IVR++DV        + + +V E LD
Sbjct: 111 ASQCPHIVRIVDVYENLYAGRKCLLIVMECLD 142

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDN 101
           +++VE +G G +G+VYK  +++TG+  AIK++++  + E     +   +++LK+   H N
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE---EEIKQEINMLKKYSHHRN 82

Query: 102 IVRLLD------VLTTGRYVYLVFEYLD 123
           I                  ++LV E+  
Sbjct: 83  IATYYGAFIKKNPPGMDDQLWLVMEFCG 110

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 26/106 (24%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN-----------IQNEPEGVPSYLIAG 90
            Y + ++IG+G +G V    N       A+K+++            +  P G        
Sbjct: 14  QYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGC 73

Query: 91  -------------VSLLKELEHDNIVRLLDVLT--TGRYVYLVFEY 121
                        +++LK+L+H N+V+L++VL      ++Y+VFE 
Sbjct: 74  IQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFEL 119

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 44  KVVEKIGQGVFGEVYKCL-----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
            + + +G+G FG+V K              VA+KM+  +N        L++  ++LK++ 
Sbjct: 26  VLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLK-ENASPSELRDLLSEFNVLKQVN 84

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           H ++++L    +    + L+ EY     L  F+R+ 
Sbjct: 85  HPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRES 120

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGK-------KVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
              E +GQG F +++K +  E G        +V +K+++                S++ +
Sbjct: 11  IFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLD--KAHRNYSESFFEAASMMSK 68

Query: 97  LEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           L H ++V    V   G    LV E++    L ++++K+
Sbjct: 69  LSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKN 106

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 19/90 (21%)

Query: 43  YKVV-EKIGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIAGVSLLKEL 97
           Y++  + +G GV G+V +C +  TG+K A+K++      + E +             +  
Sbjct: 30  YQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVD----------HHWQAS 79

Query: 98  EHDNIVRLLDV----LTTGRYVYLVFEYLD 123
              +IV +LDV        R + ++ E ++
Sbjct: 80  GGPHIVCILDVYENMHHGKRCLLIIMECME 109

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK----VAIKMINIQNEPEGVPSYLIA 89
            +  +K+  +K ++ +G G FG VYK L +  G+K    VAIK +  +         ++ 
Sbjct: 8   LLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR-EATSPKANKEILD 66

Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
              ++  +++ ++ RLL +  T   V L+ + +    L  ++R+H
Sbjct: 67  EAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREH 110

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDN 101
               + +G G  G V        G+ VA+K + I           +  + LL E  +H N
Sbjct: 17  VVSEKILGYGSSGTVVFQ-GSFQGRPVAVKRMLIDFC-----DIALMEIKLLTESDDHPN 70

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           ++R     TT R++Y+  E  +L+L   +   
Sbjct: 71  VIRYYCSETTDRFLYIALELCNLNLQDLVESK 102

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG---VSLLKEL-E 98
           + V+ K+G G FG V  C +++  K  A+K++        +  Y  +      +LK++  
Sbjct: 37  FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVR------NIKKYTRSAKIEADILKKIQN 90

Query: 99  HD----NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
            D    NIV+         ++ L+FE L   L   I ++
Sbjct: 91  DDINNNNIVKYHGKFMYYDHMCLIFEPLGPSLYEIITRN 129

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 149 YKAPESRIRSSV-----YSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVRYFTA 201
           Y+APE      V     +    D+W+ GC+ AE+ +G  LF       +HL+++      
Sbjct: 225 YRAPE------VILNLGWDVSSDMWSFGCVLAELYTGSLLFR-THEHMEHLAMMESIIQP 277

Query: 202 LTNYLV 207
           +   ++
Sbjct: 278 IPKNML 283

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++     E  GV   L   V +   L H 
Sbjct: 10  DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 69

Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
           NI+RL         VYL+ EY
Sbjct: 70  NILRLYGYFHDATRVYLILEY 90

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG---VSLLKEL-E 98
           Y++   IG+G FG+V K  +    + VAIK+I          ++L      V LL+ + +
Sbjct: 56  YEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIK------NKKAFLNQAQIEVRLLELMNK 109

Query: 99  HD-----NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           HD      IV L        ++ LVFE L  +L   +R  
Sbjct: 110 HDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNT 149

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC-GKKDHLSLIVRYFTALTNYLV 207
           Y++PE  +    Y    D+W++GCI  EM +G+PLF    + D ++ IV        +++
Sbjct: 224 YRSPEV-LLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHIL 282

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 32  SEQMEKVKDW-------NYKVVEKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPE 81
            E ++ V+              E IG+G FG VY    L+   K    A+K +N +    
Sbjct: 9   PELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDI 67

Query: 82  GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-YVYLVFEYLDL-DLGSFIRKH 133
           G  S  +    ++K+  H N++ LL +         +V  Y+   DL +FIR  
Sbjct: 68  GEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE 121

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 44  KVVEKIGQGVFGEVYKCL--NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHD 100
           K  + IG+G FG+V K            AIK +  +   +         + +L +L  H 
Sbjct: 28  KFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMK-EYASKDDHRDFAGELEVLCKLGHHP 86

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSP 148
           NI+ LL       Y+YL  EY    +L  F+RK  +    P      S 
Sbjct: 87  NIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 135

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
            +   +G+G FGEVY+       G+K  VA+K    ++         ++   ++K L+H 
Sbjct: 15  VLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCK-KDCTLDNKEKFMSEAVIMKNLDHP 73

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +IV+L+ ++      +++ E     +LG ++ ++
Sbjct: 74  HIVKLIGIIEEEP-TWIIMELYPYGELGHYLERN 106

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGK--KVAIKMINIQN-EPEGVPSYLIAGVSLLKELEH 99
           +++EK+G G FG V +   +  +GK   VA+K +              I  V+ +  L+H
Sbjct: 21  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDH 80

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            N++RL  V      + +V E   L  L   +RKH
Sbjct: 81  RNLIRLYGV-VLTPPMKMVTELAPLGSLLDRLRKH 114

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+++ IG+G FG+V        G KVA+K I      +      +A  S++ +L H N+V
Sbjct: 196 KLLQTIGKGEFGDVMLGD--YRGNKVAVKCIKNDATAQA----FLAEASVMTQLRHSNLV 249

Query: 104 RLLDVLTTGR-YVYLVFEYLDL-DLGSFIRKH 133
           +LL V+   +  +Y+V EY+    L  ++R  
Sbjct: 250 QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR 281

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 20/89 (22%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIAGVSLLKEL- 97
               + +G G+ G+V +  N  T +K A+KM+      + E           V L     
Sbjct: 20  KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARRE-----------VELHWRAS 68

Query: 98  EHDNIVRLLDV----LTTGRYVYLVFEYL 122
           +  +IVR++DV        + + +V E L
Sbjct: 69  QCPHIVRIVDVYENLYAGRKCLLIVMECL 97

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHD 100
             +V   + +G F  VY+  ++ +G++ A+K +    E +     +I  V  +K+L  H 
Sbjct: 29  RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKN--RAIIQEVCFMKKLSGHP 86

Query: 101 NIVRLLD-------VLTTGRYVYLVFEYL 122
           NIV+             TG+  +L+   L
Sbjct: 87  NIVQFCSAASIGKEESDTGQAEFLLLTEL 115

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 32  SEQMEKVKDW-------NYKVVEKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPE 81
            E ++ V+              E IG+G FG VY    L+   K    A+K +N +    
Sbjct: 73  PELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDI 131

Query: 82  GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY-VYLVFEYLDL-DLGSFIRKH 133
           G  S  +    ++K+  H N++ LL +         +V  Y+   DL +FIR  
Sbjct: 132 GEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE 185

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAGVSLLKELEH 99
           + ++ +G GVFG V+K + +  G+     V IK+I            +   +  +  L+H
Sbjct: 16  RKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIE-DKSGRQSFQAVTDHMLAIGSLDH 74

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            +IVRLL +      + LV +YL L  L   +R+H
Sbjct: 75  AHIVRLLGLCPGSS-LQLVTQYLPLGSLLDHVRQH 108

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN-----------IQNEPEGVPSYLIAG 90
           +Y+++  + QG F ++   L  +  K  A+K                N  +         
Sbjct: 32  DYRIIRTLNQGKFNKII--LCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDD 89

Query: 91  V----SLLKELEHDNIVRLLDVLTTGRYVYLVFEY 121
                 ++ +++++  +    ++T    VY+++EY
Sbjct: 90  FKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEY 124

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 16/101 (15%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAG---VSLLKEL- 97
           Y++V+ +G+G FG+V +C++ + G + VA+K++      + V  Y  A    + +L+ L 
Sbjct: 16  YEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIV------KNVDRYCEAARSEIQVLEHLN 69

Query: 98  EHD-----NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
             D       V++L+      ++ +VFE L L    FI+++
Sbjct: 70  TTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKEN 110

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 14/66 (21%)

Query: 149 YKAPESRIRSSV-----YSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVRYFTA 201
           Y+APE      V     +S P DVW++GCI  E   G  +FP     K+HL+++ R    
Sbjct: 200 YRAPE------VILALGWSQPCDVWSIGCILIEYYLGFTVFP-THDSKEHLAMMERILGP 252

Query: 202 LTNYLV 207
           L  +++
Sbjct: 253 LPKHMI 258

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK----VAIKMINIQNEPEGVPSYLIA 89
            +  +K+  +K ++ +G G FG VYK L +  G+K    VAIK +  +         ++ 
Sbjct: 8   LLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR-EATSPKANKEILD 66

Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
              ++  +++ ++ RLL +  T   V L+ + +    L  ++R+H
Sbjct: 67  EAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREH 110

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           ++ +   +G+G FG VY     +    +A+K++     E EGV   L   + +   L H 
Sbjct: 15  DFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHP 74

Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
           NI+R+ +     + +YL+ E+
Sbjct: 75  NILRMYNYFHDRKRIYLMLEF 95

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 44  KVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL- 97
              + +G G FG+V +      +  +    VA+KM+   +        L++ + +L  L 
Sbjct: 26  SFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK-PSAHLTEREALMSELKVLSYLG 84

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            H NIV LL   T G    ++ EY    DL +F+R+ 
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 121

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 48  KIGQGVFGEVYK-CLNLETGK-KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           ++G G FG V +    +   +  VAIK++  Q   +     ++    ++ +L++  IVRL
Sbjct: 17  ELGCGNFGSVRQGVYRMRKKQIDVAIKVLK-QGTEKADTEEMMREAQIMHQLDNPYIVRL 75

Query: 106 LDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           + V      + LV E      L  F+   
Sbjct: 76  IGVC-QAEALMLVMEMAGGGPLHKFLVGK 103

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 37  KVKDW-----NYKVVEKIGQGVFGEVYK-CLNLETGK--KVAIKMINIQNEPEGVPSYLI 88
             +D+       ++   IG+G FG+V++            VAIK             +L 
Sbjct: 6   STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFL- 64

Query: 89  AGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
                +++ +H +IV+L+ V+T    V+++ E   L +L SF++  
Sbjct: 65  QEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVR 109

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+VE++G G FGEV+         KVA+K +   +     P   +A  +L+K+L+H  +V
Sbjct: 16  KLVERLGAGQFGEVWMGY-YNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLV 71

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           RL  V  T   +Y++ EY++   L  F++  
Sbjct: 72  RLYAV-VTQEPIYIITEYMENGSLVDFLKTP 101

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 63.4 bits (154), Expect = 5e-12
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           ++  K+GQG FGEV+         +VAIK +             +    ++K+L H+ +V
Sbjct: 270 RLEVKLGQGCFGEVWMGT-WNGTTRVAIKTLKPGTMSP---EAFLQEAQVMKKLRHEKLV 325

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +L  V+ +   +Y+V EY+    L  F++  
Sbjct: 326 QLYAVV-SEEPIYIVTEYMSKGSLLDFLKGE 355

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 44  KVVEKIGQGVFGEVYKCL-------NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
            + + +G+G FG+V             +    VA+KM+   +  E   S L++ + ++K 
Sbjct: 84  TLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLK-DDATEKDLSDLVSEMEMMKM 142

Query: 97  L-EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           + +H NI+ LL   T    +Y++ EY    +L  ++R       RP   E          
Sbjct: 143 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR-----RPPGMEYSYDINRVPE 197

Query: 155 R 155
            
Sbjct: 198 E 198

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 44  KVVEKIGQGVFGEVYKCL-------NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
            + + +G+G FG+V             +    VA+KM+   +  E   S L++ + ++K 
Sbjct: 38  TLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLK-DDATEKDLSDLVSEMEMMKM 96

Query: 97  L-EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           + +H NI+ LL   T    +Y++ EY    +L  ++R       RP   E          
Sbjct: 97  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR-----RPPGMEYSYDINRVPE 151

Query: 155 R 155
            
Sbjct: 152 E 152

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 44  KVVEKIGQGVFGEVYKCL-----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL- 97
           +  + +G G FG+V +         +   KVA+KM+            L++ + ++  L 
Sbjct: 49  QFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLK-STAHADEKEALMSELKIMSHLG 107

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           +H+NIV LL   T G  V ++ EY    DL +F+R+         ++   +   A  +
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRK-----SRVLETDPAFAIANST 160

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 19/102 (18%), Positives = 42/102 (41%)

Query: 31  GSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG 90
             EQ       + K + +IG+G +G V K ++  +G+ +A+K I    + +     L+  
Sbjct: 12  SPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDL 71

Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
             +++  +   IV+    L      ++  E +      F + 
Sbjct: 72  DVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKY 113

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 16/101 (15%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAG---VSLLKEL- 97
           Y++V  +G+G FG+V +CL+   GK  VA+K+I        V  Y  A    +++LK++ 
Sbjct: 21  YEIVGNLGEGTFGKVVECLDHARGKSQVALKII------RNVGKYREAARLEINVLKKIK 74

Query: 98  EHD-----NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           E D       V + D      ++ + FE L  +   F++++
Sbjct: 75  EKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKEN 115

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVRYFTALTNYL 206
           Y+ PE  I    ++ P DVW++GCI  E   G  LF      ++HL ++ +    + +++
Sbjct: 205 YRPPEV-ILELGWAQPCDVWSIGCILFEYYRGFTLFQ-THENREHLVMMEKILGPIPSHM 262

Query: 207 V 207
           +
Sbjct: 263 I 263

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           ++  K+GQG FGEV+         +VAIK +             +    ++K+L H+ +V
Sbjct: 187 RLEVKLGQGCFGEVWMGT-WNGTTRVAIKTLKPGTMSP---EAFLQEAQVMKKLRHEKLV 242

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +L  V+ +   +Y+V EY+    L  F++  
Sbjct: 243 QLYAVV-SEEPIYIVTEYMSKGSLLDFLKGE 272

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +++ ++ +G+G FG V++  N       AIK I + N        +   V  L +LEH  
Sbjct: 7   DFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMR-EVKALAKLEHPG 65

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVY 161
           IVR  +            E  ++ L        ++S  P         +      +++V 
Sbjct: 66  IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVG 125

Query: 162 STPH 165
               
Sbjct: 126 QLQP 129

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 44/179 (24%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ-NEPEGVPSYLIAGVSLLKELEHDN 101
           Y+++   G     + ++ L+    ++VA+  ++ Q   P+ V    ++    L  ++   
Sbjct: 33  YRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPG 92

Query: 102 IVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH-------TITS---------------- 137
           + R+LDV+ T     +V E++    L                                  
Sbjct: 93  VARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVAL 152

Query: 138 --IRP---------HIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
               P          +  +  P   P++  +        D+  +G     ++  +   P
Sbjct: 153 SIDHPSRVRVSIDGDVV-LAYPATMPDANPQD-------DIRGIGASLYALLVNRWPLP 203

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 48  KIGQGVFGEVYK-CLNLETGK-KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           ++G G FG V K    ++     VA+K++  +     +   L+A  +++++L++  IVR+
Sbjct: 24  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 83

Query: 106 LDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           + +        LV E  +L  L  +++++
Sbjct: 84  IGICEAES-WMLVMEMAELGPLNKYLQQN 111

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 44  KVVEKIGQGVFGEVYKCL-------NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
            + + +G+G FG+V                 KVA+KM+   +  E   S LI+ + ++K 
Sbjct: 72  VLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLK-SDATEKDLSDLISEMEMMKM 130

Query: 97  L-EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           + +H NI+ LL   T    +Y++ EY    +L  +++  
Sbjct: 131 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAR 169

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 48  KIGQGVFGEVYK-CLNLETGK-KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           ++G G FG V +    +   +  VAIK++    E       +     ++ +L++  IVRL
Sbjct: 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMM-REAQIMHQLDNPYIVRL 401

Query: 106 LDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           + V      + LV E      L  F+   
Sbjct: 402 IGVC-QAEALMLVMEMAGGGPLHKFLVGK 429

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 29  TNGSEQMEKVKDWNY-----KVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEP 80
              S+    +++W+      ++ E IG+G FG+VY       G+   +VAI++I+I+ + 
Sbjct: 16  RKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYH------GRWHGEVAIRLIDIERDN 69

Query: 81  EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYL 122
           E         V   ++  H+N+V  +    +  ++ ++    
Sbjct: 70  EDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLC 111

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 19/92 (20%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 32  SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV 91
            +++ ++KD +++ + ++G G  G V+K  +  +G  +A K+I+++ +P  + + +I  +
Sbjct: 24  KQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPA-IRNQIIREL 82

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD 123
            +L E     IV       +   + +  E++D
Sbjct: 83  QVLHECNSPYIVGFYGAFYSDGEISICMEHMD 114

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 145 VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
           VG   Y +PE R++ + YS   D+W++G    EM  G+   P
Sbjct: 191 VGTRSYMSPE-RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP 231

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGK--KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
           ++   IG+G FG+V++            VAIK             +L      +++ +H 
Sbjct: 393 ELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFL-QEALTMRQFDHP 451

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +IV+L+ V+T    V+++ E   L +L SF++  
Sbjct: 452 HIVKLIGVITENP-VWIIMELCTLGELRSFLQVR 484

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 44  KVVEKIGQGVFGEVYKCL-----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL- 97
           K+ + +G+G FG+V +          T + VA+KM+  +         L++ + +L  + 
Sbjct: 30  KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK-EGATHSEHRALMSELKILIHIG 88

Query: 98  EHDNIVRLLDVLTT-GRYVYLVFEYLDL-DLGSFIRKH 133
            H N+V LL   T  G  + ++ E+    +L +++R  
Sbjct: 89  HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK 126

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           K+ +K+G G FGEV+         KVA+K +             +A  +++K L+HD +V
Sbjct: 191 KLEKKLGAGQFGEVWMAT-YNKHTKVAVKTM---KPGSMSVEAFLAEANVMKTLQHDKLV 246

Query: 104 RLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +L  V  T   +Y++ E++    L  F++  
Sbjct: 247 KLHAV-VTKEPIYIITEFMAKGSLLDFLKSD 276

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 44  KVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL- 97
           +  + +G G FG+V               +VA+KM+  +         L++ + ++ +L 
Sbjct: 48  EFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLK-EKADSSEREALMSELKMMTQLG 106

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            H+NIV LL   T    +YL+FEY    DL +++R  
Sbjct: 107 SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK 143

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG-----VSLLKELE 98
           +  ++IG+G FG V+K   ++    VAIK + + +                 V ++  L 
Sbjct: 22  EYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLN 81

Query: 99  HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTI 135
           H NIV+L  ++       +V E++   DL   +     
Sbjct: 82  HPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAH 117

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 44  KVVEKIGQGVFGEVYKCL-NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
            + EKIG G FG V++   +   G  VA+K++  Q+      +  +  V+++K L H NI
Sbjct: 40  NIKEKIGAGSFGTVHRAEWH---GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI 96

Query: 103 VRLLDVLTTGRYVYLVFEYL 122
           V  +  +T    + +V EYL
Sbjct: 97  VLFMGAVTQPPNLSIVTEYL 116

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGKKVAIKMINI--QNEPEGVPSYLIAGVSLLKELEHD 100
            + E IG G FG+VY+       G +VA+K        +       +     L   L+H 
Sbjct: 10  TLEEIIGIGGFGKVYRAFWI---GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHP 66

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT 136
           NI+ L  V      + LV E+     L   +    I 
Sbjct: 67  NIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIP 103

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 59.6 bits (144), Expect = 9e-11
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 42  NYKVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGV-SLLK 95
              V   +G+G F +VY+       + +  +K  +K+    N  E    Y+   +   LK
Sbjct: 66  LVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWE---FYIGTQLMERLK 122

Query: 96  ELEHDNIVRLLDVLTTGRYVYLVFEYLD 123
                  ++            LV E   
Sbjct: 123 PSMQHMFMKFYSAHLFQNGSVLVGELYS 150

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
            + + ++G G  G+V+K    +TG  +A+K +      E     L+    +LK  +   I
Sbjct: 27  LENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYI 86

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
           V+      T   V++  E +        ++
Sbjct: 87  VQCFGTFITNTDVFIAMELMGTCAEKLKKR 116

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD 100
            V ++IG G FG VYK      GK    VA+KM+N+              V +L++  H 
Sbjct: 27  TVGQRIGSGSFGTVYK------GKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHV 80

Query: 101 NIVRLLDVLTTGRYVYLVFEYL 122
           NI+  +   T  +   +V ++ 
Sbjct: 81  NILLFMGYSTAPQL-AIVTQWC 101

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 37/210 (17%), Positives = 59/210 (28%), Gaps = 83/210 (39%)

Query: 43  YKVVEKIGQGVFGEVYKC--LNLETGKKVAIKMINIQNEPEGVPSYL-----IAGVSLLK 95
           Y+V   I  G  G +Y     N+  G+ V +K +    + E     +     +A      
Sbjct: 82  YEVKGCIAHGGLGWIYLALDRNVN-GRPVVLKGLVHSGDAEAQAMAMAERQFLA------ 134

Query: 96  ELEHDNIVRLLDV-----LTTGRYVYLVFEYLD-LDLGSFIR-----KHTITSIRP---- 140
           E+ H +IV++ +             Y+V EY+    L             I  +      
Sbjct: 135 EVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPA 194

Query: 141 ----H--------IKEVGSPYKAPE-----------------SRI--RSSVYSTPH---- 165
               H        +K        PE                 SRI     +Y TP     
Sbjct: 195 LSYLHSIGLVYNDLK--------PENIMLTEEQLKLIDLGAVSRINSFGYLYGTPGFQAP 246

Query: 166 -----------DVWAVGCIFAEMVSGKPLF 184
                      D++ VG   A +    P  
Sbjct: 247 EIVRTGPTVATDIYTVGRTLAALTLDLPTR 276

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 17/90 (18%), Positives = 40/90 (44%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
            + + ++G+G +G V K  ++ +G+ +A+K I      +     L+     ++ ++    
Sbjct: 9   LEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFT 68

Query: 103 VRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
           V     L     V++  E +D  L  F ++
Sbjct: 69  VTFYGALFREGDVWICMELMDTSLDKFYKQ 98

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 57.7 bits (139), Expect = 5e-10
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 35  MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLL 94
           ME      +++  KIG G FGE+Y   N++T ++VAIK+ N++ +       L+    + 
Sbjct: 1   MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK----HPQLLYESKIY 56

Query: 95  KELE-HDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
           + L+    I  +      G Y  LV + L   L      
Sbjct: 57  RILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNF 95

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 22/106 (20%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ------NEPEGVPSYLIAGVSLLK 95
             +++E   +G FG V+K       + VA+K+  IQ      NE E         V  L 
Sbjct: 25  PLQLLEVKARGRFGCVWKA--QLLNEYVAVKIFPIQDKQSWQNEYE---------VYSLP 73

Query: 96  ELEHDNIVRLLDVLTTGRYV----YLVFEYLDL-DLGSFIRKHTIT 136
            ++H+NI++ +     G  V    +L+  + +   L  F++ + ++
Sbjct: 74  GMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVS 119

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 12/99 (12%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLI-AGVSLLKELEHDNI 102
            + E IG+G FGEV++      G++VA+K+ + + E     S+   A +     L H+NI
Sbjct: 45  VLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE----RSWFREAEIYQTVMLRHENI 98

Query: 103 VRLLDVLTTGRYV----YLVFEYLDL-DLGSFIRKHTIT 136
           +  +             +LV +Y +   L  ++ ++T+T
Sbjct: 99  LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVT 137

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLI-AGVSLLKELEHDNI 102
            ++E +G+G +GEV++      G+ VA+K+ + ++E     S+     +     L H+NI
Sbjct: 11  TLLECVGKGRYGEVWRGSWQ--GENVAVKIFSSRDE----KSWFRETELYNTVMLRHENI 64

Query: 103 VRLLDVLTTGRY----VYLVFEYLDL-DLGSFIRKHTIT 136
           +  +    T R+    ++L+  Y ++  L  +++  T+ 
Sbjct: 65  LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLD 103

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 16/147 (10%), Positives = 40/147 (27%), Gaps = 5/147 (3%)

Query: 39  KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSY-LIAGVSLLKEL 97
            +   K+VE +  G    V+   ++E  +  A+K+  +  E        L         L
Sbjct: 60  GERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARL 119

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHI----KEVGSPYKAPE 153
             ++     D          V                  ++  ++               
Sbjct: 120 LGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFS 179

Query: 154 SRIRSSVYSTPHDVWAVGCIFAEMVSG 180
           +     V+     + A+  + A+++  
Sbjct: 180 TLDFVYVFRGDEGILALHILTAQLIRL 206

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 2/55 (3%)

Query: 145 VGSPYKAPESRIRSS--VYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
                 AP   + +S   ++   + W +G     +      F            R
Sbjct: 252 SVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKR 306

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 22/104 (21%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ------NEPEGVPSYLIAGVSLLKEL 97
           ++V++IG+G +GEV+       G+KVA+K+           E E         +     +
Sbjct: 40  QMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTEEASWFRETE---------IYQTVLM 88

Query: 98  EHDNIVRLLDVLTTGRY----VYLVFEYLDL-DLGSFIRKHTIT 136
            H+NI+  +     G      +YL+ +Y +   L  +++  T+ 
Sbjct: 89  RHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLD 132

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 13/102 (12%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 44  KVVEKIGQGVFGEVYK-CLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
             + K+ +   GE++K       G  + +K++ +++               L+   H N+
Sbjct: 13  NFLTKLNENHSGELWKGRWQ---GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNV 69

Query: 103 VRLLDVLTT--GRYVYLVFEYLDL-DLGSFIRKHTITSIRPH 141
           + +L    +    +  L+  ++    L + + + T   +   
Sbjct: 70  LPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQS 111

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 20/102 (19%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLK------- 95
           YK+V+K+G G    VY   +     KVAIK I I                 LK       
Sbjct: 13  YKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIP---------PREKEETLKRFEREVH 63

Query: 96  ---ELEHDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
              +L H NIV ++DV       YLV EY++   L  +I  H
Sbjct: 64  NSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH 105

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGKKVAIKMINIQNEPEGVPSYLI-AGVSLLKELEH 99
           N K++E IG+G +G VYK  L+    + VA+K+ +  N      +++    +  +  +EH
Sbjct: 14  NLKLLELIGRGRYGAVYKGSLD---ERPVAVKVFSFANR----QNFINEKNIYRVPLMEH 66

Query: 100 DNIVRLL-----DVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT 136
           DNI R +               LV EY     L  ++  HT  
Sbjct: 67  DNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSD 109

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-D 100
            Y++  KIG G FG++Y   ++  G++VAIK+  ++ +       L     + K ++   
Sbjct: 10  RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGV 65

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
            I  +      G Y  +V E L   L      
Sbjct: 66  GIPTIRWCGAEGDYNVMVMELLGPSLEDLFNF 97

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 44  KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           +V E +G+G FG V K       K VAIK I  ++E +      I  +  L  + H NIV
Sbjct: 11  EVEEVVGRGAFGVVCKAKW--RAKDVAIKQIESESERKAF----IVELRQLSRVNHPNIV 64

Query: 104 RLLDVLTTGRYVYLVFEYL 122
           +L         V LV EY 
Sbjct: 65  KLYGACL--NPVCLVMEYA 81

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-D 100
           +YKV  +IG+G FG +++  NL   ++VAIK    +++       L       K L    
Sbjct: 11  HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCT 66

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK 132
            I  +      G +  LV + L   L   +  
Sbjct: 67  GIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDL 98

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 24/238 (10%), Positives = 51/238 (21%), Gaps = 97/238 (40%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPS---------------- 85
                  +GQ       +  + ETG+   + +      P                     
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 133

Query: 86  ----------YLIAGVSLLKELEHDNIVRLLDVLTTG--RYVYLVFEYLDLDLG------ 127
                       I    L+K+ +   ++R+            + ++  +  +L       
Sbjct: 134 KNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVL 193

Query: 128 -SFIRKHTITS---------------------------IRP---------HIK------- 143
            S    H                               +RP          +        
Sbjct: 194 LSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL 253

Query: 144 --------EVGSP-YKAPE----------SRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
                      S  ++ PE           R R ++ +   D WA+G +   +     
Sbjct: 254 VRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADL 311

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-D 100
           N++V +KIG G FGE+    NL T + VAIK+  +++        L       K+L   D
Sbjct: 10  NFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR----APQLHLEYRFYKQLGSGD 65

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDL 126
            I ++      G+Y  +V E L   L
Sbjct: 66  GIPQVYYFGPCGKYNAMVLELLGPSL 91

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 16/127 (12%)

Query: 23  YKVVKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG 82
           Y         + ++ ++   + + +KIG G FG +Y        +K A  ++ ++ +  G
Sbjct: 19  YFQSMPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENG 78

Query: 83  VPSY------LIAGVSLLKELEHDNIVRLLDV----------LTTGRYVYLVFEYLDLDL 126
                      +A    +K+      +  L +               Y ++V E L +DL
Sbjct: 79  PLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDL 138

Query: 127 GSFIRKH 133
                ++
Sbjct: 139 QKISGQN 145

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI--NIQNEPEGVP-----SYLIAGVSLLK 95
           Y++   +G+G  G+VY+  +    + VA+K++   + ++P         +          
Sbjct: 36  YRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGR----- 90

Query: 96  ELEHDNIVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
            L+  ++V + D       +Y+    ++ +DL + +R+ 
Sbjct: 91  -LQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQ 128

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 14/82 (17%)

Query: 123 DLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP 182
           DL    ++ KH    I+         Y++ E  I S  Y+TP D+W+  C+  E+ +G  
Sbjct: 239 DLGNACWVHKHFTEDIQTR------QYRSLEVLIGSG-YNTPADIWSTACMAFELATGDY 291

Query: 183 LFPC-------GKKDHLSLIVR 197
           LF           +DH++LI+ 
Sbjct: 292 LFEPHSGEEYTRDEDHIALIIE 313

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 21/105 (20%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAG---VSLLKELE- 98
           Y V+ K+G G F  V+   +++  K VA+K++           Y       + LLK +  
Sbjct: 39  YHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVK------SAEHYTETALDEIRLLKSVRN 92

Query: 99  -------HDNIVRLLDVLT----TGRYVYLVFEYLDLDLGSFIRK 132
                   + +V+LLD        G ++ +VFE L   L  +I K
Sbjct: 93  SDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIK 137

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 18/103 (17%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI--NIQNEPEGVP-----SYLIAGVSLLK 95
           Y++ E +G G   EV+   +L   + VA+K++  ++  +P         +   A      
Sbjct: 14  YELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAA----- 68

Query: 96  ELEHDNIVRLLDV----LTTGRYVYLVFEYLD-LDLGSFIRKH 133
            L H  IV + D        G   Y+V EY+D + L   +   
Sbjct: 69  -LNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE 110

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 17/82 (20%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINI------QNEPEGVPSYLIAGVSLLK 95
             +  EKIG+GVFGEV++ +       VAIK+I I          +     ++  + + K
Sbjct: 21  KLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISK 78

Query: 96  ELE---------HDNIVRLLDV 108
           EL           +  + L  V
Sbjct: 79  ELSLLSGEVCNRTEGFIGLNSV 100

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 44  KVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE 98
           K+ + +G+G FG+V +          T + VA+KM+          + +     L+    
Sbjct: 25  KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGH 84

Query: 99  HDNIVRLLDVLTT-GRYVYLVFEYLDL-DLGSFIRKH 133
           H N+V LL   T  G  + ++ E+    +L +++R  
Sbjct: 85  HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK 121

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 48  KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLD 107
            +G+G FG+VYK   L  G  VA+K +  +    G        V ++    H N++RL  
Sbjct: 37  ILGRGGFGKVYKG-RLADGTLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRG 94

Query: 108 VLTTGRYVYLVFEYL 122
              T     LV+ Y+
Sbjct: 95  FCMTPTERLLVYPYM 109

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 10/117 (8%), Positives = 29/117 (24%), Gaps = 28/117 (23%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG-------------------- 82
                 +GQ       +  + ETG+   + +      P                      
Sbjct: 80  LVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIK 139

Query: 83  VPSYLIAGVSLLKE---LEHDNIVRLLDVLTTGR-----YVYLVFEYLDLDLGSFIR 131
                   +  +     ++     +++ V    R       + ++  +  +L +F  
Sbjct: 140 NQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGE 196

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAGVSLLKELE 98
           N+     IG GVFG+VYK   L  G KVA+K       Q   E         +  L    
Sbjct: 40  NFDHKFLIGHGVFGKVYKG-VLRDGAKVALKRRTPESSQGIEE-----FETEIETLSFCR 93

Query: 99  HDNIVRLLDVLTTGRYVYLVFEY 121
           H ++V L+        + L+++Y
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKY 116

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 48  KIGQGVFGEVYK-CLNLETGKKVAIKMINIQNEPEGVPSYL--IAGVSLLKELEHDNIVR 104
           K+G+G FG VYK  +N      VA+K +    +             + ++ + +H+N+V 
Sbjct: 38  KMGEGGFGVVYKGYVN---NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 94

Query: 105 LLDVLTTGRYVYLVFEYL 122
           LL   + G  + LV+ Y+
Sbjct: 95  LLGFSSDGDDLCLVYVYM 112

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 17/108 (15%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETG--------KKVAIKM--INIQNEPE------GVPS 85
            +K+     +   G +Y+     T         +K ++K+   + +   E          
Sbjct: 43  QWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKP 102

Query: 86  YLIAGVSLLKELEHDNIVRLLDV-LTTGRYVYLVFEYLDLDLGSFIRK 132
             +     L       I   +   +   +Y +LV   L   L S +  
Sbjct: 103 LQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDV 150

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 42  NYKVVEKIGQGVFGEVYKCL-----NLETGKKVAIKMINIQNEP---------EGVPSYL 87
            +KV   IGQG FG +Y        ++ +     +K+    N P                
Sbjct: 36  AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQ 95

Query: 88  IAGVSLLKELEHDNIVRL----LDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           I      ++L++  + +     L       Y +++ +    DL      +
Sbjct: 96  IQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEAN 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.98
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.97
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.97
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.97
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.97
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.97
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.96
3niz_A	311	Rhodanese family protein; structural genomics, str	99.96
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.96
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.96
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.96
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.95
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.95
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.95
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.95
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.95
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.95
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.95
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.95
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.95
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.95
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.95
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.95
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.95
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.95
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.95
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.95
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.95
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.95
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.95
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.95
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.95
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.95
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.95
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.95
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.95
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.95
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.95
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.95
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.95
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.95
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.94
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.94
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.94
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.94
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.94
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.94
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.94
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.94
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.94
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.94
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.94
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.94
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.94
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.94
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.94
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.94
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.94
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.94
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.94
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.94
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.94
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.94
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.94
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.94
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.94
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.94
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.94
3bhy_A	283	Death-associated protein kinase 3; death associate	99.94
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.94
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.94
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.94
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.94
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.94
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.94
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.94
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.94
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.94
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.94
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.94
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.94
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.94
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.94
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.93
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.93
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.93
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.93
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.93
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.93
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.93
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.93
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.93
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.93
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.93
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.93
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.93
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.93
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.93
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.93
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.93
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.93
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.93
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.93
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.93
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.93
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.93
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.93
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.93
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.93
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.93
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.93
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.93
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.93
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.93
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.93
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.93
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.93
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.93
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.93
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.93
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.93
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.93
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.93
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.93
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.93
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.93
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.93
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.93
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.93
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.93
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.93
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.93
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.93
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.93
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.93
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.93
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.93
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.93
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.93
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.93
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.93
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.93
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.93
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.93
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.92
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.92
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.92
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.92
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.92
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.92
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.92
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.92
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.92
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.92
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.92
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.92
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.92
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.92
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.92
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.92
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.92
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.92
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.92
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.92
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.92
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.92
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.92
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.92
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.92
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.92
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.92
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.92
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.92
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.92
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.92
3uqc_A	286	Probable conserved transmembrane protein; structur	99.92
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.92
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.92
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.92
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.92
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.92
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.92
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.91
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.91
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.91
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.91
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.91
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.91
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.91
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.91
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.91
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.91
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.91
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.91
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.91
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.91
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.91
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.91
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.91
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.91
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.91
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.91
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.91
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.91
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.91
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.9
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.9
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.9
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.9
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.9
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.9
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.9
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.9
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.9
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.9
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.9
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.9
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.89
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.89
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.89
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.89
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.89
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.89
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.89
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.89
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.88
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.88
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.88
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.87
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.87
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.86
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.86
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.86
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.82
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.81
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.53
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.32
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.9
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.6
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.23
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.88
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.07
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.63
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	95.87
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	95.65
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.58
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.09
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	94.52
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	93.65
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	93.37
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	92.52
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	91.18
3ats_A	357	Putative uncharacterized protein; hypothetical pro	87.84
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	85.54
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	85.52

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.9e-36  Score=248.55  Aligned_cols=177  Identities=26%  Similarity=0.403  Sum_probs=134.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++++.||+|+||.||+|+++.+++.||||++.+........+.+.+|+.++++++|||||++++++.+.+.+|+|
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV  101 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV  101 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            35789999999999999999999999999999999987665555678899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~------------  145 (218)
                      ||||++ +|.+++......                             |++|.+           .+|            
T Consensus       102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~  181 (350)
T 4b9d_A          102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVEL  181 (350)
T ss_dssp             EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHH
T ss_pred             EeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCccc
Confidence            999987 999998654221                             444443           233            


Q ss_pred             -----CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCcccc----hhhhhhhc
Q 041487          146 -----GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLV----LPCFLSIM  215 (218)
Q Consensus       146 -----g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  215 (218)
                           |+ .|+|||. +.+..|+.++|||||||++|+|+||+.||.+.+...+...+.....++.+..    +-+++..|
T Consensus       182 ~~~~~GT~~YmAPE~-l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~  260 (350)
T 4b9d_A          182 ARACIGTPYYLSPEI-CENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQL  260 (350)
T ss_dssp             HHHHHSCCTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHH
T ss_pred             ccccCCCccccCHHH-HCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHH
Confidence                 32 3999995 5566799999999999999999999999998765555554444333333322    33455555


Q ss_pred             c
Q 041487          216 L  216 (218)
Q Consensus       216 l  216 (218)
                      |
T Consensus       261 L  261 (350)
T 4b9d_A          261 F  261 (350)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3e-35  Score=234.48  Aligned_cols=178  Identities=26%  Similarity=0.362  Sum_probs=133.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .++|++.+.||+|+||.||+|.++.+++.||+|++.+... .....+.+.+|+.++++++||||+++++++.+.+.+|+|
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            4789999999999999999999999999999999986553 345567899999999999999999999999999999999


Q ss_pred             EecCCCChHHHhhhcccC---------------------------Cccccc-----------cccC--------------
Q 041487          119 FEYLDLDLGSFIRKHTIT---------------------------SIRPHI-----------KEVG--------------  146 (218)
Q Consensus       119 ~E~~~~~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g--------------  146 (218)
                      ||||+++|.+++......                           |++|.+           .+||              
T Consensus        92 mEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~  171 (275)
T 3hyh_A           92 IEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTS  171 (275)
T ss_dssp             EECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC------------
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCe
Confidence            999988999998765432                           444443           2333              


Q ss_pred             --C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc---ccchhhhhhhccc
Q 041487          147 --S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN---YLVLPCFLSIMLL  217 (218)
Q Consensus       147 --~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~  217 (218)
                        + .|+|||.+....+++.++||||+||++|+|+||+.||.+.+...+...+.......+   +..+-+++..||.
T Consensus       172 ~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  248 (275)
T 3hyh_A          172 CGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLI  248 (275)
T ss_dssp             ---CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSC
T ss_pred             eECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcc
Confidence              2 299999665555567899999999999999999999998766666665554322211   2233445555553

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.7e-35  Score=239.33  Aligned_cols=179  Identities=22%  Similarity=0.407  Sum_probs=139.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|++++.||+|+||.||+|+++.+++.||+|++.+.. ......+.+.+|+.++++++|||||+++++|.+.+.+|
T Consensus        29 ~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~y  108 (311)
T 4aw0_A           29 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY  108 (311)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            44678999999999999999999999999999999997643 23455788999999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc-------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE-------------  144 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~-------------  144 (218)
                      +|||||++ +|.+++...+..                           |++|.+           .+             
T Consensus       109 ivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~  188 (311)
T 4aw0_A          109 FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ  188 (311)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTC
T ss_pred             EEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCc
Confidence            99999998 999998765432                           444432           12             


Q ss_pred             ------cCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc---ccchhhhhhh
Q 041487          145 ------VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN---YLVLPCFLSI  214 (218)
Q Consensus       145 ------~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  214 (218)
                            +|++ |+|||. +.+..|+.++||||+||++|+|+||++||.+.+...+...+.......+   +...-+++..
T Consensus       189 ~~~~~~~GTp~YmAPEv-l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~  267 (311)
T 4aw0_A          189 ARANSFVGTAQYVSPEL-LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEK  267 (311)
T ss_dssp             CCBCCCCSCGGGCCHHH-HHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHH
T ss_pred             ccccCcccCcccCCHHH-HcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHH
Confidence                  2433 999995 4556689999999999999999999999998766555555444222111   2233355666


Q ss_pred             ccc
Q 041487          215 MLL  217 (218)
Q Consensus       215 ~l~  217 (218)
                      ||.
T Consensus       268 lL~  270 (311)
T 4aw0_A          268 LLV  270 (311)
T ss_dssp             HSC
T ss_pred             Hcc
Confidence            653

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.9e-34  Score=236.30  Aligned_cols=155  Identities=25%  Similarity=0.462  Sum_probs=128.0

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ..|++++.||+|+||.||+|+++.+|+.||||++....  ....+.+.+|+.+++.++|||||+++++|.+.+.+|+|||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE  151 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  151 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG--CSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCc--hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            56999999999999999999999999999999997543  2335678999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Cccccc-----------ccc-----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEV-----------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~-----------------  145 (218)
                      ||++ +|.+++......                          |++|.+           .+|                 
T Consensus       152 y~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~  231 (346)
T 4fih_A          152 FLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLV  231 (346)
T ss_dssp             CCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCC
T ss_pred             CCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccc
Confidence            9998 899888764332                          444433           233                 


Q ss_pred             CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          146 GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                      |++ |+|||. +.+..|+.++|||||||++|||++|++||.+.+.......+..
T Consensus       232 GTp~YmAPEv-l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~  284 (346)
T 4fih_A          232 GTPYWMAPEL-ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRD  284 (346)
T ss_dssp             SCGGGCCHHH-HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH
T ss_pred             cCcCcCCHHH-HCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHc
Confidence            332 999995 5566699999999999999999999999998765555555544

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=9.8e-34  Score=237.48  Aligned_cols=174  Identities=24%  Similarity=0.391  Sum_probs=136.1

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ..|++++.||+|+||.||+|.++.+|+.||||++....  ....+.+.+|+.+|+.++|||||+++++|...+.+|+|||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE  228 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  228 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT--CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccc--hhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence            56999999999999999999999999999999997543  3345779999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Cccccc-----------cccCC---------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEVGS---------------  147 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g~---------------  147 (218)
                      ||++ +|.+++......                          |+++.+           .+||.               
T Consensus       229 y~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~  308 (423)
T 4fie_A          229 FLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLV  308 (423)
T ss_dssp             CCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCE
T ss_pred             CCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccc
Confidence            9998 899888654332                          444432           33332               


Q ss_pred             ---cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc------ccchhhhhhhccc
Q 041487          148 ---PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN------YLVLPCFLSIMLL  217 (218)
Q Consensus       148 ---~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~  217 (218)
                         .|+|||. +.+..|+.++|||||||++|||++|++||.+.+...+...+.....+..      +..+-+++..||.
T Consensus       309 GTp~YmAPEv-l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~  386 (423)
T 4fie_A          309 GTPYWMAPEL-ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLV  386 (423)
T ss_dssp             ECTTTCCHHH-HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSC
T ss_pred             cCcCcCCHHH-HCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcC
Confidence               2999995 5566699999999999999999999999988765555555544322211      2233456666653

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4e-35  Score=236.76  Aligned_cols=161  Identities=22%  Similarity=0.381  Sum_probs=124.4

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ....++|++++.||+|+||.||+|++.   .+++.||+|++++.........++.+|+.++++++|||||++++++.+.+
T Consensus        20 ~~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~   99 (304)
T 3ubd_A           20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEG   99 (304)
T ss_dssp             CCCGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETT
T ss_pred             cCCccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC
Confidence            455678999999999999999999874   46789999999765433334456889999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc----------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE----------  144 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~----------  144 (218)
                      .+|+|||||++ +|.+++......                           |++|.+           .+          
T Consensus       100 ~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  179 (304)
T 3ubd_A          100 KLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  179 (304)
T ss_dssp             EEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred             EEEEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence            99999999997 999998765432                           444433           11          


Q ss_pred             -------cCCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          145 -------VGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       145 -------~g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             +|++ |+|||. ..+..|+.++|||||||++|+|+||+.||.+.+...+...+..
T Consensus       180 ~~~~~~~~GT~~YmAPE~-~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~  240 (304)
T 3ubd_A          180 EKKAYSFCGTVEYMAPEV-VNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILK  240 (304)
T ss_dssp             -CCCCSCCCCGGGCCHHH-HHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CccccccccCcccCCHHH-hccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHc
Confidence                   2333 999995 5566699999999999999999999999998866555555443

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3e-34  Score=231.63  Aligned_cols=172  Identities=25%  Similarity=0.426  Sum_probs=130.7

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      +.+..++|.+.+.||+|+||.||+|++.     .++..||||.++..  .....+.|.+|+.++++++|||||++++++.
T Consensus         8 ~~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~   85 (299)
T 4asz_A            8 QHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCV   85 (299)
T ss_dssp             CBCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             cccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC--ChHHHHHHHHHHHHHHhCCCCCCccEEEEEe
Confidence            4567789999999999999999999865     35788999998642  3344678999999999999999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhccc--------------C--------------------------Ccccc--------
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTI--------------T--------------------------SIRPH--------  141 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~--------------~--------------------------~~~~~--------  141 (218)
                      +.+.+++|||||++ +|.+++..+..              .                          |+++.        
T Consensus        86 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~  165 (299)
T 4asz_A           86 EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENL  165 (299)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCC
Confidence            99999999999987 99999876421              0                          33332        


Q ss_pred             ---ccccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          142 ---IKEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       142 ---~~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                         +.+||.                    .|+|||.+ .+..|+.++|||||||++|||+| |+.||.+.+...+...+.
T Consensus       166 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~-~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~  244 (299)
T 4asz_A          166 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI-MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECIT  244 (299)
T ss_dssp             CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH
T ss_pred             cEEECCcccceecCCCCceeecCceecChhhcCHHHH-cCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence               233332                    39999955 45569999999999999999999 899999886666655555


Q ss_pred             HhcccCcccchhh
Q 041487          198 YFTALTNYLVLPC  210 (218)
Q Consensus       198 ~~~~~~~~~~~~~  210 (218)
                      ....++.+...|.
T Consensus       245 ~~~~~~~p~~~~~  257 (299)
T 4asz_A          245 QGRVLQRPRTCPQ  257 (299)
T ss_dssp             HTCCCCCCTTCCH
T ss_pred             cCCCCCCCccchH
Confidence            5443433333343

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=236.87  Aligned_cols=163  Identities=31%  Similarity=0.536  Sum_probs=132.5

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------CCE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------GRY  114 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~  114 (218)
                      ++|++++.||+|+||.||+|.++.+|+.||||+++.........+.+.+|+.+|+.++|||||++++++..      .+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            57999999999999999999999999999999997655444556788999999999999999999998763      367


Q ss_pred             EEEEEecCCCChHHHhhhcccC---------------------------Cccccc-----------cc------------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI-----------KE------------  144 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~-----------~~------------  144 (218)
                      +|+|||||+++|.+++......                           |++|.+           .+            
T Consensus       134 ~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~  213 (398)
T 4b99_A          134 VYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA  213 (398)
T ss_dssp             EEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-----
T ss_pred             EEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCcc
Confidence            9999999999999988764332                           444432           12            


Q ss_pred             ---------cCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccC
Q 041487          145 ---------VGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALT  203 (218)
Q Consensus       145 ---------~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~  203 (218)
                               +|+ .|+|||.+.+..+++.++||||+||++|+|++|++||.+. ..+.+..+.+..+.++
T Consensus       214 ~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~  283 (398)
T 4b99_A          214 EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPS  283 (398)
T ss_dssp             --CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCC
T ss_pred             ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence                     233 3999997776677899999999999999999999999987 4555666666666554

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.1e-33  Score=229.19  Aligned_cols=177  Identities=23%  Similarity=0.374  Sum_probs=133.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      ..++..+++++++.||+|+||.||+|...     .+++.||||.++.. ......+.|.+|+.++++++|||||++++++
T Consensus        20 ~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~-~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~   98 (308)
T 4gt4_A           20 LKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK-AEGPLREEFRHEAMLRARLQHPNVVCLLGVV   98 (308)
T ss_dssp             CCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC--CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc-cChHHHHHHHHHHHHHHhCCCCCCCCcceEE
Confidence            34566788999999999999999999853     35789999999743 3445567899999999999999999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcccC-------------------------------------------Cccc-----
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRP-----  140 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~-----  140 (218)
                      ...+.+++|||||++ +|.+++......                                           |+++     
T Consensus        99 ~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl  178 (308)
T 4gt4_A           99 TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLV  178 (308)
T ss_dssp             CSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred             EECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEE
Confidence            999999999999987 999998543210                                           2222     


Q ss_pred             ------cccccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHH
Q 041487          141 ------HIKEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLS  193 (218)
Q Consensus       141 ------~~~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~  193 (218)
                            ++.+||.                    .|+|||.+. ++.|+.++|||||||++|||+| |+.||.+.+...+.
T Consensus       179 ~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~-~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~  257 (308)
T 4gt4_A          179 YDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIM-YGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVV  257 (308)
T ss_dssp             CGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHH
T ss_pred             CCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHh-CCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence                  2233332                    399999654 5569999999999999999999 89999988666666


Q ss_pred             HHHHHhcccCcccchhhhhh
Q 041487          194 LIVRYFTALTNYLVLPCFLS  213 (218)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~  213 (218)
                      ..+.....++.+...|..+.
T Consensus       258 ~~i~~~~~~~~p~~~~~~~~  277 (308)
T 4gt4_A          258 EMIRNRQVLPCPDDCPAWVY  277 (308)
T ss_dssp             HHHHTTCCCCCCTTCCHHHH
T ss_pred             HHHHcCCCCCCcccchHHHH
Confidence            66655444444444444443

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.5e-33  Score=223.09  Aligned_cols=155  Identities=25%  Similarity=0.375  Sum_probs=122.8

Q ss_pred             cce-eEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe----CCEE
Q 041487           41 WNY-KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT----GRYV  115 (218)
Q Consensus        41 ~~~-~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~  115 (218)
                      ++| ++.++||+|+||.||+|.++.++..||+|.+..........+.+.+|+.++++++|||||+++++|..    ...+
T Consensus        25 gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~  104 (290)
T 3fpq_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI  104 (290)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             CceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEE
Confidence            344 78889999999999999999999999999998665555567789999999999999999999999864    4569


Q ss_pred             EEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc------------cccC-------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI------------KEVG-------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~------------~~~g-------  146 (218)
                      |+|||||++ +|.+++......                             |++|.+            .+||       
T Consensus       105 ~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~  184 (290)
T 3fpq_A          105 VLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence            999999987 999988764332                             333332            2333       


Q ss_pred             --------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHH
Q 041487          147 --------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVR  197 (218)
Q Consensus       147 --------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~  197 (218)
                              + .|+|||.+ .+ .|+.++|||||||++|+|+||+.||... +...+...+.
T Consensus       185 ~~~~~~~GTp~YmAPE~~-~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~  243 (290)
T 3fpq_A          185 SFAKAVIGTPEFMAPEMY-EE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVT  243 (290)
T ss_dssp             TSBEESCSSCCCCCGGGG-GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHT
T ss_pred             CccCCcccCccccCHHHc-CC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHH
Confidence                    2 29999955 44 4899999999999999999999999765 3344444333

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=6.7e-33  Score=226.46  Aligned_cols=151  Identities=21%  Similarity=0.362  Sum_probs=123.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..+.|++.+.||+|+||.||+|+++.+|+.||||+++....       ..+|+.+++.++|||||++++++.+.+.+|+|
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv  128 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIF  128 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            34678999999999999999999999999999999975422       24799999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccccc------------ccc-------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPHI------------KEV-------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~------------~~~-------------  145 (218)
                      ||||++ +|.+++......                           |++|.+            .+|             
T Consensus       129 mEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~  208 (336)
T 4g3f_A          129 MELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK  208 (336)
T ss_dssp             ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred             EeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccc
Confidence            999997 999998765432                           333322            222             


Q ss_pred             ---------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          146 ---------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 ---------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                               |+ .|+|||. +.+..|+.++|||||||++|+|+||++||.+.+...+...+.
T Consensus       209 ~~~~~~~~~GT~~YmAPE~-~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~  269 (336)
T 4g3f_A          209 SLLTGDYIPGTETHMAPEV-VMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIA  269 (336)
T ss_dssp             -----CCCCCCGGGCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHH
T ss_pred             ceecCCccccCccccCHHH-HCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHH
Confidence                     33 3999995 556679999999999999999999999999875554444444

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=228.78  Aligned_cols=172  Identities=27%  Similarity=0.414  Sum_probs=130.9

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      ..+..++|.+.++||+|+||.||+|+.+     .++..||||.++..  .....+.|.+|+.++++++|||||+++++|.
T Consensus        36 ~~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~  113 (329)
T 4aoj_A           36 HHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIVRFFGVCT  113 (329)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             cccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            3466788999999999999999999865     35789999998632  3344678999999999999999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC------------------------------------------Ccccc------
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT------------------------------------------SIRPH------  141 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~------------------------------------------~~~~~------  141 (218)
                      +...+++|||||++ +|.+++..+...                                          |+++.      
T Consensus       114 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~  193 (329)
T 4aoj_A          114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQ  193 (329)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEET
T ss_pred             ECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECC
Confidence            99999999999997 999998654210                                          23332      


Q ss_pred             -----ccccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHH
Q 041487          142 -----IKEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLI  195 (218)
Q Consensus       142 -----~~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~  195 (218)
                           +.+||.                    .|+|||. ..+..++.++|||||||++|||+| |+.||...+...+...
T Consensus       194 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~-~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~  272 (329)
T 4aoj_A          194 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPES-ILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDC  272 (329)
T ss_dssp             TTEEEECCCC----------------CCCCGGGCCHHH-HTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHH
T ss_pred             CCcEEEcccccceeccCCCcceecCcccccccccChhh-hcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence                 233332                    3999995 556669999999999999999999 8999998765555555


Q ss_pred             HHHhcccCcccchhh
Q 041487          196 VRYFTALTNYLVLPC  210 (218)
Q Consensus       196 ~~~~~~~~~~~~~~~  210 (218)
                      +.....++.+...|.
T Consensus       273 i~~g~~~~~p~~~~~  287 (329)
T 4aoj_A          273 ITQGRELERPRACPP  287 (329)
T ss_dssp             HHHTCCCCCCTTCCH
T ss_pred             HHcCCCCCCcccccH
Confidence            544333433333333

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.98  E-value=1.1e-32  Score=222.84  Aligned_cols=159  Identities=20%  Similarity=0.341  Sum_probs=123.9

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      .+++..+++++.+.||+|+||.||+|+.+   ..||||+++.........+.|.+|+.++++++|||||++++++.. +.
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~  105 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DN  105 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-Ce
Confidence            34677889999999999999999999753   469999997655555567889999999999999999999998754 56


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccCC-------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVGS-------  147 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g~-------  147 (218)
                      +++|||||++ +|.+++......                            |++|.           +.+||.       
T Consensus       106 ~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~  185 (307)
T 3omv_A          106 LAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW  185 (307)
T ss_dssp             CEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred             EEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence            8999999997 999998654321                            33332           233332       


Q ss_pred             -------------cccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHH
Q 041487          148 -------------PYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVR  197 (218)
Q Consensus       148 -------------~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~  197 (218)
                                   .|+|||.+..  ...|+.++|||||||++|||+||+.||.+.+. ..+...+.
T Consensus       186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~  251 (307)
T 3omv_A          186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVG  251 (307)
T ss_dssp             --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHH
T ss_pred             CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHh
Confidence                         3999997643  34589999999999999999999999987643 34444433

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.97  E-value=3.9e-31  Score=217.91  Aligned_cols=166  Identities=23%  Similarity=0.422  Sum_probs=125.5

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccC-----CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC-CCeeeeeee
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLET-----GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-DNIVRLLDV  108 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~  108 (218)
                      ..++..++|++.+.||+|+||.||+|.+...     ++.||||.+.... .....+.+.+|+.++.+++| ||||+++++
T Consensus        58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~-~~~~~~~~~~E~~il~~l~hhpnIV~l~g~  136 (353)
T 4ase_A           58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNLLGA  136 (353)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc-ChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence            3457788999999999999999999997654     3579999986432 23345679999999999976 899999999


Q ss_pred             EEe-CCEEEEEEecCCC-ChHHHhhhcccC-------------------------------------------Ccccc--
Q 041487          109 LTT-GRYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRPH--  141 (218)
Q Consensus       109 ~~~-~~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~~--  141 (218)
                      |.. +..+++|||||++ +|.+++......                                           |+++.  
T Consensus       137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NI  216 (353)
T 4ase_A          137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNI  216 (353)
T ss_dssp             ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             EEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccce
Confidence            865 5679999999997 999998653210                                           22222  


Q ss_pred             ---------ccccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC-cc
Q 041487          142 ---------IKEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK-KD  190 (218)
Q Consensus       142 ---------~~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~-~~  190 (218)
                               +.+||.                    .|+|||.+. ++.|+.++|||||||++|||+| |+.||.+.+ .+
T Consensus       217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~-~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~  295 (353)
T 4ase_A          217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE  295 (353)
T ss_dssp             EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH
T ss_pred             eeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHh-cCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHH
Confidence                     223322                    399999654 5569999999999999999998 999999874 34


Q ss_pred             hHHHHHHHhccc
Q 041487          191 HLSLIVRYFTAL  202 (218)
Q Consensus       191 ~~~~~~~~~~~~  202 (218)
                      .+...+.....+
T Consensus       296 ~~~~~i~~g~~~  307 (353)
T 4ase_A          296 EFCRRLKEGTRM  307 (353)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHcCCCC
Confidence            455555543333

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.97  E-value=7.9e-31  Score=229.74  Aligned_cols=152  Identities=24%  Similarity=0.434  Sum_probs=121.9

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHH---HHHHhhCCCCCeeeeeeeEEeC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAG---VSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e---~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .+..++|++++.||+|+||.||+|+++.+|+.||+|++++... .........+|   +.+++.++|||||+++++|.+.
T Consensus       185 ~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~  264 (689)
T 3v5w_A          185 HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP  264 (689)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             CCchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC
Confidence            3456889999999999999999999999999999999976432 22223344444   5667778999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc--------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV--------  145 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~--------  145 (218)
                      +.+|+|||||++ +|.+++...+..                           |++|.+           .+|        
T Consensus       265 ~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~  344 (689)
T 3v5w_A          265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK  344 (689)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             CEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCC
Confidence            999999999997 999998765432                           444433           233        


Q ss_pred             -------CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 -------GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 -------g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             |++ |+|||.+..+..|+.++|||||||++|+|++|++||.+.+
T Consensus       345 ~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~  395 (689)
T 3v5w_A          345 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK  395 (689)
T ss_dssp             CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGG
T ss_pred             CCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                   333 9999976666679999999999999999999999998753

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.97  E-value=3.7e-30  Score=224.55  Aligned_cols=156  Identities=21%  Similarity=0.354  Sum_probs=126.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++++.||+|+||.||+|.++.+|+.||+|++....  ....+.+.+|+.+|+.++||||++++++|.+...+|+||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~  233 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY  233 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc--hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence            478999999999999999999999999999999987532  233567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Cccccc-------------cccC-----------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPHI-------------KEVG-----------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-------------~~~g-----------  146 (218)
                      |||++ +|.+++......                            |++|.+             .+||           
T Consensus       234 E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~  313 (573)
T 3uto_A          234 EFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV  313 (573)
T ss_dssp             ECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEE
T ss_pred             eecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCce
Confidence            99987 999988643211                            333322             2333           


Q ss_pred             -----C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 -----S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -----~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                           + .|+|||. +.+..|+.++|||||||++|+|++|+.||.+.+.......+..
T Consensus       314 ~~~~GT~~y~APEv-~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~  370 (573)
T 3uto_A          314 KVTTGTAEFAAPEV-AEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKS  370 (573)
T ss_dssp             EEECSSGGGCCHHH-HTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHT
T ss_pred             eeeEECccccCHHH-hCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHh
Confidence                 2 2999994 5566789999999999999999999999998865555544443

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.97  E-value=1.1e-30  Score=210.89  Aligned_cols=142  Identities=25%  Similarity=0.463  Sum_probs=112.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-------
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-------  113 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-------  113 (218)
                      ++|++++.||+|+||.||+|.++.+++.||||.++... .....+.+.+|+.++++++|||||+++++|...+       
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            56999999999999999999999999999999997543 3334568899999999999999999999986443       


Q ss_pred             -----EEEEEEecCCC-ChHHHhhhcccC------------------------------Cccccc-----------ccc-
Q 041487          114 -----YVYLVFEYLDL-DLGSFIRKHTIT------------------------------SIRPHI-----------KEV-  145 (218)
Q Consensus       114 -----~~~lv~E~~~~-~L~~~~~~~~~~------------------------------~~~~~~-----------~~~-  145 (218)
                           .+|+|||||++ +|.+++......                              |++|.+           .+| 
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFG  163 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFG  163 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCc
Confidence                 47999999987 999988754321                              344432           222 


Q ss_pred             ----------------------------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ----------------------------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ----------------------------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                                  |+ .|+|||. ..+..|+.++|||||||++|||++   ||...
T Consensus       164 la~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~-~~~~~y~~~~DiwSlGvilyell~---Pf~~~  230 (299)
T 4g31_A          164 LVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQ-IHGNSYSHKVDIFSLGLILFELLY---PFSTQ  230 (299)
T ss_dssp             CC--------------------------CCCTTSCHHH-HTTCCCCTHHHHHHHHHHHHHHHS---CCSSH
T ss_pred             cceecCCCccccccccccccccccCCcccCccccCHHH-HcCCCCCCHHHHHHHHHHHHHHcc---CCCCc
Confidence                                        33 3999995 556679999999999999999996   88653

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.97  E-value=9.4e-30  Score=210.50  Aligned_cols=158  Identities=23%  Similarity=0.407  Sum_probs=124.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      .+.|++.+.||+|+||.||+|+++   .+++.||+|.+...    ....++.+|+.+++.+ +||||++++++|.+.+.+
T Consensus        20 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~----~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~   95 (361)
T 4f9c_A           20 SNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT----SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV   95 (361)
T ss_dssp             GGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT----SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred             cCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc----cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence            467999999999999999999875   35788999988532    3456788999999998 699999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC------------------------Cccccc------------ccc-------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT------------------------SIRPHI------------KEV-------------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~------------------------~~~~~~------------~~~-------------  145 (218)
                      |+|||||++ +|.+++......                        |++|.+            .+|             
T Consensus        96 ~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~  175 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIEL  175 (361)
T ss_dssp             EEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGG
T ss_pred             EEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccc
Confidence            999999986 898887542221                        444432            122             


Q ss_pred             --------------------------------CCc-ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC--Ccc
Q 041487          146 --------------------------------GSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG--KKD  190 (218)
Q Consensus       146 --------------------------------g~~-y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~--~~~  190 (218)
                                                      |++ |+|||.+.+...|+.++||||+||++|+|++|+.||...  +.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~  255 (361)
T 4f9c_A          176 LKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLT  255 (361)
T ss_dssp             GGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH
T ss_pred             cccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHH
Confidence                                            333 999997766667999999999999999999999999654  445


Q ss_pred             hHHHHHHHhcc
Q 041487          191 HLSLIVRYFTA  201 (218)
Q Consensus       191 ~~~~~~~~~~~  201 (218)
                      .+..+...++.
T Consensus       256 ~l~~I~~~~G~  266 (361)
T 4f9c_A          256 ALAQIMTIRGS  266 (361)
T ss_dssp             HHHHHHHHHCH
T ss_pred             HHHHHHHhcCC
Confidence            56666655543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.96  E-value=8.7e-29  Score=202.39  Aligned_cols=181  Identities=27%  Similarity=0.387  Sum_probs=139.3

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ....++|++.+.||+|+||.||+|.+..+++.||+|++..........+.+.+|+.+++.++||||+++++++...+.+|
T Consensus        11 ~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~   90 (328)
T 3fe3_A           11 QPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLY   90 (328)
T ss_dssp             CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEE
Confidence            34568899999999999999999999999999999999866555555678899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-----------  146 (218)
                      +||||+++ +|.+++......                           +++|.+           .++|           
T Consensus        91 lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~  170 (328)
T 3fe3_A           91 LIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKL  170 (328)
T ss_dssp             EEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGG
T ss_pred             EEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCcc
Confidence            99999976 998888654321                           333322           2222           


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc---ccchhhhhhhccc
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN---YLVLPCFLSIMLL  217 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~  217 (218)
                            ..|+|||.+......+.++|||||||++|+|++|+.||.+.+...+...+.......+   +..+.+++..||+
T Consensus       171 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  250 (328)
T 3fe3_A          171 DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLV  250 (328)
T ss_dssp             GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHCC
T ss_pred             ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHCC
Confidence                  2399999766555456899999999999999999999998876666655554322211   3334455555553

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.96  E-value=4.2e-28  Score=196.75  Aligned_cols=169  Identities=40%  Similarity=0.694  Sum_probs=131.8

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ...+...++|++.+.||+|+||.||+|.+. +++.||+|.+..........+.+.+|+.++++++||||+++++++....
T Consensus        14 ~~~q~l~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   92 (311)
T 3niz_A           14 LYFQGLMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSER   92 (311)
T ss_dssp             -CEECSSCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS
T ss_pred             eeecchHhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC
Confidence            344556789999999999999999999984 5899999999765555566788999999999999999999999999999


Q ss_pred             EEEEEEecCCCChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      ..++||||++++|.+++......                            +++|.+           .++|        
T Consensus        93 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  172 (311)
T 3niz_A           93 CLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP  172 (311)
T ss_dssp             CEEEEEECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred             EEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence            99999999998888877654321                            333322           2222        


Q ss_pred             ----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccC
Q 041487          147 ----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALT  203 (218)
Q Consensus       147 ----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~  203 (218)
                                ..|+|||.+.....++.++|||||||++|+|++|+.||.+. ..+.+..+...++.+.
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~  240 (311)
T 3niz_A          173 VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPN  240 (311)
T ss_dssp             CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCC
T ss_pred             cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCC
Confidence                      23999997766667899999999999999999999999887 5566666666655543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.96  E-value=6.3e-28  Score=197.99  Aligned_cols=179  Identities=20%  Similarity=0.301  Sum_probs=135.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|++++.||+|+||.||+|.++.+++.||+|++++.. ......+.+.+|+.+++.++||||+++++++.....+|
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE
Confidence            34678999999999999999999999999999999997543 23445678899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-----------  146 (218)
                      +||||+++ +|.+++......                           +++|.+           .++|           
T Consensus        82 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~  161 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCc
Confidence            99999987 888887654321                           333322           2222           


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc---Ccccchhhhhhhcc
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL---TNYLVLPCFLSIML  216 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l  216 (218)
                             ..|+|||. ..+..++.++|||||||++|+|++|+.||...+...+...+......   ..+..+.+++..||
T Consensus       162 ~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL  240 (337)
T 1o6l_A          162 MKTFCGTPEYLAPEV-LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLL  240 (337)
T ss_dssp             BCCCEECGGGCCGGG-GSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             ccccccChhhCChhh-hcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence                   23999995 45566899999999999999999999999887666555544432211   11333445555555


Q ss_pred             c
Q 041487          217 L  217 (218)
Q Consensus       217 ~  217 (218)
                      .
T Consensus       241 ~  241 (337)
T 1o6l_A          241 K  241 (337)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.96  E-value=7.3e-28  Score=196.69  Aligned_cols=168  Identities=38%  Similarity=0.637  Sum_probs=128.4

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ......++|++.+.||+|+||.||+|.+..+++.||+|+++.........+.+.+|+.++++++||||+++++++.....
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (329)
T 3gbz_A           28 PSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHR  107 (329)
T ss_dssp             ----CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTE
T ss_pred             CcccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCE
Confidence            34456788999999999999999999999999999999997665555556778899999999999999999999999999


Q ss_pred             EEEEEecCCCChHHHhhhcccC---------------------------Cccccc----------------cccC-----
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI----------------KEVG-----  146 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~----------------~~~g-----  146 (218)
                      +++||||++++|.+++......                           ++++.+                .++|     
T Consensus       108 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~  187 (329)
T 3gbz_A          108 LHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAF  187 (329)
T ss_dssp             EEEEEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHH
T ss_pred             EEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCcccc
Confidence            9999999999999888764322                           333322                2222     


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                                   ..|+|||.+.....++.++|||||||++|+|++|+.||.+. ..+.+..+....+.+
T Consensus       188 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~  257 (329)
T 3gbz_A          188 GIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLP  257 (329)
T ss_dssp             C-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCC
T ss_pred             CCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCC
Confidence                         23999997766666899999999999999999999999887 444555555554443

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.95  E-value=1.4e-27  Score=197.66  Aligned_cols=159  Identities=30%  Similarity=0.489  Sum_probs=128.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++.+.||+|+||.||+|.++.++..||+|++..........+.+.+|+.+++.++||||+++++++...+..|+|
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            35689999999999999999999999999999999986555555567899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccC----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVG----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g----------  146 (218)
                      |||+.+ +|.+++......                           +++|.              +.++|          
T Consensus       107 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~  186 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA  186 (362)
T ss_dssp             ECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCS
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcc
Confidence            999987 888877654321                           22222              22222          


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+..
T Consensus       187 ~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~  244 (362)
T 2bdw_A          187 WHGFAGTPGYLSPEVL-KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKA  244 (362)
T ss_dssp             CCCSCSCTTTCCHHHH-TTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             cccCCCCccccCHHHH-ccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence                   239999954 555689999999999999999999999988765555554443

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.95  E-value=1.1e-27  Score=191.98  Aligned_cols=160  Identities=44%  Similarity=0.722  Sum_probs=127.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|+||.||+|.+ .+++.||+|.+..........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE   80 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence            6799999999999999999998 678999999997654444556788999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Cccccc-----------ccc----------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEV----------------  145 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~----------------  145 (218)
                      |++++|.+++......                            +++|.+           .++                
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  160 (288)
T 1ob3_A           81 HLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHE  160 (288)
T ss_dssp             CCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--------
T ss_pred             ecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccccc
Confidence            9998888887653211                            333322           122                


Q ss_pred             --CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcc
Q 041487          146 --GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTA  201 (218)
Q Consensus       146 --g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~  201 (218)
                        ...|+|||.+.....++.++|||||||++|+|++|+.||.+. ..+.+..+.+..+.
T Consensus       161 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~  219 (288)
T 1ob3_A          161 IVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGT  219 (288)
T ss_dssp             -CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred             cccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCC
Confidence              223999997666566899999999999999999999999877 33445555554443

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.95  E-value=2.1e-27  Score=190.57  Aligned_cols=162  Identities=38%  Similarity=0.671  Sum_probs=128.1

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|+||.||+|.++.+++.||+|.+..........+.+.+|+.++++++||||+++++++......++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            57999999999999999999999999999999998766666667889999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Cccccc-----------cccC---------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---------------  146 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---------------  146 (218)
                      |+++++.+++......                            ++++.+           .++|               
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  161 (292)
T 3o0g_A           82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAE  161 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSC
T ss_pred             cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCC
Confidence            9998877766542211                            333322           2222               


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCC-CCCC-CcchHHHHHHHhccc
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPL-FPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~P-f~~~-~~~~~~~~~~~~~~~  202 (218)
                         ..|+|||.+.....++.++|||||||++|+|++|..| |.+. ..+.+..+.+..+.+
T Consensus       162 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~  222 (292)
T 3o0g_A          162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTP  222 (292)
T ss_dssp             CSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             ccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCC
Confidence               2399999766666689999999999999999998777 4444 334445555544443

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.95  E-value=9.6e-29  Score=200.05  Aligned_cols=141  Identities=25%  Similarity=0.382  Sum_probs=104.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC----EE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR----YV  115 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~  115 (218)
                      ..+|.+.+.||+|+||.||+|+.  +|+.||||+++...   ........|+..+.+++|||||++++++...+    .+
T Consensus         2 ar~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~   76 (303)
T 3hmm_A            2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL   76 (303)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccc---hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEE
Confidence            35689999999999999999987  68999999986421   11122334555667889999999999997543    68


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------------Ccccc-----------ccccCC--
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPH-----------IKEVGS--  147 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~-----------~~~~g~--  147 (218)
                      |+|||||++ +|.+++......                                  |++|.           +.+||.  
T Consensus        77 ~lV~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  156 (303)
T 3hmm_A           77 WLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence            999999986 999988654322                                  22332           233332  


Q ss_pred             --------------------cccCcccccCCC-----CCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          148 --------------------PYKAPESRIRSS-----VYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       148 --------------------~y~aPE~~~~~~-----~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                                          .|+|||.+....     .++.++|||||||++|||+||++||.
T Consensus       157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~  219 (303)
T 3hmm_A          157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGG  219 (303)
T ss_dssp             EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTT
T ss_pred             cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCC
Confidence                                399999664331     36679999999999999999987664

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.95  E-value=7.4e-28  Score=195.68  Aligned_cols=161  Identities=42%  Similarity=0.762  Sum_probs=114.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++++.||+|+||.||+|.++.+++.||+|.++... .....+.+.+|+.++++++||||+++++++...+..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   82 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS-EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF   82 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCS-TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc-ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence            467999999999999999999999999999999997543 3344577889999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhhccc-------C--------------------------Cccccc-----------cccC---------
Q 041487          120 EYLDLDLGSFIRKHTI-------T--------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~-------~--------------------------~~~~~~-----------~~~g---------  146 (218)
                      ||++++|.+++.....       .                          +++|.+           .++|         
T Consensus        83 e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  162 (317)
T 2pmi_A           83 EFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPV  162 (317)
T ss_dssp             ECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCC
T ss_pred             EecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCc
Confidence            9999999988765421       0                          233221           2222         


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHHhcc
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTA  201 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~~~~~  201 (218)
                               ..|+|||.+.....++.++|||||||++|+|++|+.||.+.+. +.+..+....+.
T Consensus       163 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~  227 (317)
T 2pmi_A          163 NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGT  227 (317)
T ss_dssp             CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCS
T ss_pred             ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence                     2399999766556689999999999999999999999988743 344444444443

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.95  E-value=4.3e-27  Score=194.70  Aligned_cols=157  Identities=25%  Similarity=0.403  Sum_probs=126.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..+.|++.+.||+|+||.||+|.++.++..||+|++++.....    ...+.+.+|+.+++.++||||+++++++.....
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   89 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD   89 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence            3567999999999999999999999999999999998654322    245789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc---------------ccccC-----
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH---------------IKEVG-----  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~---------------~~~~g-----  146 (218)
                      +++||||+++ +|.+++......                           +++|.               +.++|     
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~  169 (361)
T 2yab_A           90 VVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI  169 (361)
T ss_dssp             EEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEEC
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEc
Confidence            9999999975 999988654321                           22222               22232     


Q ss_pred             -----------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          147 -----------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 -----------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                                 + .|+|||. ..+..++.++|||||||++|+|++|..||.+.+...+...+
T Consensus       170 ~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i  230 (361)
T 2yab_A          170 EDGVEFKNIFGTPEFVAPEI-VNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANI  230 (361)
T ss_dssp             CTTCCCCCCCSCGGGCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHH
T ss_pred             CCCCccccCCCCccEECchH-HcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                       2 2999995 45566899999999999999999999999887555444443

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.95  E-value=6.3e-28  Score=201.24  Aligned_cols=165  Identities=34%  Similarity=0.620  Sum_probs=122.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCC--E
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGR--Y  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~--~  114 (218)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|.+..........+++.+|+.+++.+. ||||+++++++...+  .
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            3467899999999999999999999999999999998755444555678889999999996 999999999997543  7


Q ss_pred             EEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------cccCC----------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEVGS----------  147 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g~----------  147 (218)
                      +|+||||++++|.+++......                          +++|.+           .+||.          
T Consensus        86 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~  165 (388)
T 3oz6_A           86 VYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRV  165 (388)
T ss_dssp             EEEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCC
T ss_pred             EEEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccc
Confidence            9999999998888887654222                          333322           23331          


Q ss_pred             -----------------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHH
Q 041487          148 -----------------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVR  197 (218)
Q Consensus       148 -----------------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~  197 (218)
                                                   .|+|||.+.....++.++|||||||++|+|++|++||.+. ..+.+..++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~  245 (388)
T 3oz6_A          166 TNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIG  245 (388)
T ss_dssp             CCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence                                         2899997766577999999999999999999999999987 4455555555


Q ss_pred             Hhccc
Q 041487          198 YFTAL  202 (218)
Q Consensus       198 ~~~~~  202 (218)
                      .++.|
T Consensus       246 ~~~~p  250 (388)
T 3oz6_A          246 VIDFP  250 (388)
T ss_dssp             HHCCC
T ss_pred             hcCCC
Confidence            54444

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.95  E-value=3.6e-27  Score=190.02  Aligned_cols=153  Identities=28%  Similarity=0.522  Sum_probs=123.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..+|++.+.||+|+||.||+|.+..+++.||+|.+....  ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   96 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ--QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGG--CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccc--ccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence            467999999999999999999999999999999987543  233577899999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC--------------------------Cccccc-----------cccC---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEVG---------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g---------------  146 (218)
                      ||+++ +|.+++......                          +++|.+           .++|               
T Consensus        97 e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  176 (297)
T 3fxz_A           97 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM  176 (297)
T ss_dssp             ECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCC
T ss_pred             ECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCc
Confidence            99976 999887654322                          333322           2232               


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~  195 (218)
                         ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+.......
T Consensus       177 ~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~  227 (297)
T 3fxz_A          177 VGTPYWMAPEVV-TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL  227 (297)
T ss_dssp             CSCGGGCCHHHH-HCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH
T ss_pred             cCCcCccChhhh-cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence               239999954 455689999999999999999999999987754443333

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.95  E-value=2e-27  Score=193.53  Aligned_cols=179  Identities=18%  Similarity=0.292  Sum_probs=135.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|++.+.||+|+||.||+|+++.+++.||+|++++.. ......+.+.+|+.+++.++||||+++++++.+...+|
T Consensus         3 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF   82 (318)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE
T ss_pred             CChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEE
Confidence            45688999999999999999999999999999999997543 22345678889999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV------------  145 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~------------  145 (218)
                      +||||+++ +|.+++......                           +++|.+           .++            
T Consensus        83 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~  162 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT  162 (318)
T ss_dssp             EEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCC
T ss_pred             EEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCcccc
Confidence            99999987 999888654321                           333322           222            


Q ss_pred             --C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc---Ccccchhhhhhhccc
Q 041487          146 --G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL---TNYLVLPCFLSIMLL  217 (218)
Q Consensus       146 --g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~  217 (218)
                        | ..|+|||. ..+..++.++|||||||++|+|++|+.||...+.......+......   ..+..+.++++.||.
T Consensus       163 ~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~  239 (318)
T 1fot_A          163 LCGTPDYIAPEV-VSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLIT  239 (318)
T ss_dssp             CCSCTTTCCHHH-HTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             ccCCccccCHhH-hcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhc
Confidence              2 23999995 45566899999999999999999999999877554444433322111   123345556666653

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.95  E-value=2.4e-27  Score=190.70  Aligned_cols=153  Identities=30%  Similarity=0.460  Sum_probs=124.9

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++.+.||+|+||.||+|.+..++..||+|.+...... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus         7 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~   86 (294)
T 4eqm_A            7 KIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCY   86 (294)
T ss_dssp             SCEETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEE
T ss_pred             hHhhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeE
Confidence            45678899999999999999999999999999999998654322 34457889999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g----------  146 (218)
                      ++||||+++ +|.+++......                           +++|.+           .++|          
T Consensus        87 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  166 (294)
T 4eqm_A           87 YLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSL  166 (294)
T ss_dssp             EEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-----
T ss_pred             EEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccc
Confidence            999999987 999988764321                           333322           2222          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                               ..|+|||.+ .+..++.++||||||+++|+|++|+.||.+.+..
T Consensus       167 ~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~  218 (294)
T 4eqm_A          167 TQTNHVLGTVQYFSPEQA-KGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV  218 (294)
T ss_dssp             --------CCSSCCHHHH-HTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH
T ss_pred             cccCccccCccccCHhHh-cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH
Confidence                     239999954 4556899999999999999999999999876443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.95  E-value=1.3e-27  Score=197.01  Aligned_cols=160  Identities=22%  Similarity=0.337  Sum_probs=129.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|++++.||+|+||.||+|+++.+++.||+|++.+.. ......+.+.+|+.+++.++||||+++++++.+...+|
T Consensus        38 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  117 (350)
T 1rdq_E           38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE
Confidence            45689999999999999999999999999999999997543 23345678899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-----------  146 (218)
                      +||||+++ +|.+++......                           +++|.+           .++|           
T Consensus       118 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~  197 (350)
T 1rdq_E          118 MVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT  197 (350)
T ss_dssp             EEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCC
T ss_pred             EEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCCccc
Confidence            99999976 999888764321                           333332           2222           


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                          ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+..
T Consensus       198 ~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~  252 (350)
T 1rdq_E          198 LCGTPEALAPEII-LSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS  252 (350)
T ss_dssp             CEECGGGCCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             ccCCccccCHHHh-cCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHc
Confidence                239999954 455689999999999999999999999998765555544443

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=196.99  Aligned_cols=163  Identities=23%  Similarity=0.367  Sum_probs=126.5

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG  112 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~  112 (218)
                      ...+..++|++++.||+|+||.||+|+++.+++.||+|++++.. ......+.+.+|..+++.+ +||||+++++++...
T Consensus        17 ~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~   96 (353)
T 3txo_A           17 SNRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTP   96 (353)
T ss_dssp             ------CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             cCCCchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeC
Confidence            34467789999999999999999999999999999999997542 2234467788999999988 799999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------  146 (218)
                      ..+|+||||+++ +|.+++......                           +++|.+           .++|       
T Consensus        97 ~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~  176 (353)
T 3txo_A           97 DRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC  176 (353)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence            999999999987 888887654321                           333332           2222       


Q ss_pred             ----------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 ----------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ----------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                                + .|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+...+...+..
T Consensus       177 ~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~  238 (353)
T 3txo_A          177 NGVTTATFCGTPDYIAPEIL-QEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILN  238 (353)
T ss_dssp             ---------CCGGGCCHHHH-HHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCccccccCCCcCeEChhhc-CCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHc
Confidence                      2 39999954 455589999999999999999999999998866655555443

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.95  E-value=4.4e-27  Score=196.10  Aligned_cols=156  Identities=23%  Similarity=0.374  Sum_probs=126.0

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..+..++|++++.||+|+||.||+|.++.+++.||+|++.+.. ......+.+.+|+.+++.++||||+++++++.+...
T Consensus        10 ~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~   89 (384)
T 4fr4_A           10 EDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEED   89 (384)
T ss_dssp             CCCCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            4466789999999999999999999999999999999997543 234456789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC---------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g---------  146 (218)
                      +|+||||+.+ +|.+++......                           +++|.+           .++|         
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  169 (384)
T 4fr4_A           90 MFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET  169 (384)
T ss_dssp             EEEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             EEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence            9999999987 888887654321                           333322           2222         


Q ss_pred             --------CcccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          147 --------SPYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       147 --------~~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                              ..|+|||.+..  +..++.++|||||||++|+|++|+.||.......
T Consensus       170 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~  224 (384)
T 4fr4_A          170 QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS  224 (384)
T ss_dssp             CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC
T ss_pred             ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc
Confidence                    23999997653  3458899999999999999999999998654333

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.95  E-value=3e-27  Score=200.61  Aligned_cols=159  Identities=26%  Similarity=0.455  Sum_probs=127.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++.+.||+|+||.||+|.++.+++.+|+|++..........+.+.+|+.+++.++||||+++++++...+..++|
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            35779999999999999999999999999999999986554445567889999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccccc--------------cccC----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPHI--------------KEVG----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~--------------~~~g----------  146 (218)
                      |||+++ +|.+++......                           +++|.+              .++|          
T Consensus        89 ~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~  168 (444)
T 3soa_A           89 FDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ  168 (444)
T ss_dssp             ECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCC
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCc
Confidence            999987 888877654321                           333322              2222          


Q ss_pred             -------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 -------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             + .|+|||. ..+..++.++|||||||++|+|++|++||.+.+...+...+..
T Consensus       169 ~~~~~~gt~~Y~APE~-l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~  227 (444)
T 3soa_A          169 AWFGFAGTPGYLSPEV-LRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKA  227 (444)
T ss_dssp             BCCCSCSCGGGCCHHH-HTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred             eeecccCCcccCCHHH-hcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Confidence                   2 3999995 4555689999999999999999999999988765555555544

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.95  E-value=6.8e-27  Score=192.30  Aligned_cols=165  Identities=33%  Similarity=0.635  Sum_probs=128.9

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-------  111 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------  111 (218)
                      ..++|++.+.||+|+||.||+|.++.+++.||+|.+............+.+|+.+++.++||||+++++++..       
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            3578999999999999999999999999999999997665555556788899999999999999999999976       


Q ss_pred             -CCEEEEEEecCCCChHHHhhhcccC----------------------------Cccccc-----------cccC-----
Q 041487          112 -GRYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-----  146 (218)
Q Consensus       112 -~~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-----  146 (218)
                       .+.+++||||++++|.+++......                            +++|.+           .++|     
T Consensus        95 ~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~  174 (351)
T 3mi9_A           95 CKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAF  174 (351)
T ss_dssp             --CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CCceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcccc
Confidence             4579999999998777766543211                            333322           2222     


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHHhcccC
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTALT  203 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~~~~~~~  203 (218)
                                       ..|+|||.+.....++.++|||||||++|+|++|+.||.+... ..+..+.+..+.++
T Consensus       175 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~  249 (351)
T 3mi9_A          175 SLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  249 (351)
T ss_dssp             CCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             cccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence                             2299999766666689999999999999999999999998744 44444444444443

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.95  E-value=1.9e-27  Score=199.89  Aligned_cols=160  Identities=24%  Similarity=0.421  Sum_probs=126.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++++.||+|+||.||+|+++.+++.||+|++++.. ......+.+.+|+.+++.++||||+++++++.+...+
T Consensus        65 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~  144 (410)
T 3v8s_A           65 RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYL  144 (410)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEE
Confidence            356789999999999999999999999999999999997532 2233345688999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC--------------------------Cccccc-----------ccc------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEV------------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~------------  145 (218)
                      |+||||+++ +|.+++......                          +++|.+           .++            
T Consensus       145 ~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~  224 (410)
T 3v8s_A          145 YMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV  224 (410)
T ss_dssp             EEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEE
T ss_pred             EEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcc
Confidence            999999977 898887654321                          333322           222            


Q ss_pred             ------CC-cccCcccccCCC---CCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          146 ------GS-PYKAPESRIRSS---VYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       146 ------g~-~y~aPE~~~~~~---~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                            |+ .|+|||.+....   .++.++|||||||++|+|++|+.||.+.+.......+
T Consensus       225 ~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i  285 (410)
T 3v8s_A          225 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKI  285 (410)
T ss_dssp             ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH
T ss_pred             cccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHH
Confidence                  22 399999665433   2788999999999999999999999987555444433

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.95  E-value=5e-27  Score=193.24  Aligned_cols=162  Identities=23%  Similarity=0.338  Sum_probs=126.9

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCC
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGR  113 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~  113 (218)
                      ..+..++|++.+.||+|+||.||+|+++.+++.||+|++++.. ......+.+..|..++..+ +||||+++++++.+..
T Consensus        12 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~   91 (345)
T 1xjd_A           12 IKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE   91 (345)
T ss_dssp             ----CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC
Confidence            3467789999999999999999999999999999999997543 1234467788899988877 9999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc---------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV---------  145 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~---------  145 (218)
                      .+|+||||+++ +|.+++......                           +++|.+           .++         
T Consensus        92 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  171 (345)
T 1xjd_A           92 NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG  171 (345)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccC
Confidence            99999999976 998888653221                           233321           222         


Q ss_pred             --------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          146 --------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 --------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                              |+ .|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+...+...+..
T Consensus       172 ~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~  232 (345)
T 1xjd_A          172 DAKTNTFCGTPDYIAPEIL-LGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRM  232 (345)
T ss_dssp             TCCBCCCCSCGGGCCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCcccCCCCCcccCChhhh-cCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence                    22 39999954 455689999999999999999999999998766665555544

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.95  E-value=2.4e-26  Score=187.59  Aligned_cols=157  Identities=27%  Similarity=0.414  Sum_probs=125.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..+.|++.+.||+|+||.||+|.++.++..||+|++.......    ...+.+.+|+.+++.++||||+++++++.....
T Consensus         9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   88 (326)
T 2y0a_A            9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   88 (326)
T ss_dssp             HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            3467999999999999999999999999999999998654322    246789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccc---------------cccccC-----
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP---------------HIKEVG-----  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~---------------~~~~~g-----  146 (218)
                      .++||||+++ +|.+++......                           +++|               .+.++|     
T Consensus        89 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~  168 (326)
T 2y0a_A           89 VILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  168 (326)
T ss_dssp             EEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeEC
Confidence            9999999976 999988654321                           2222               222222     


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                                  ..|+|||. ..+..++.++|||||||++|+|++|+.||.+.........+
T Consensus       169 ~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~  229 (326)
T 2y0a_A          169 DFGNEFKNIFGTPEFVAPEI-VNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANV  229 (326)
T ss_dssp             CTTSCCCCCCSCTTTCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHH
T ss_pred             CCCCccccccCCcCcCCcee-ecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHH
Confidence                        23999995 45566899999999999999999999999877544444333

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.95  E-value=2.4e-27  Score=202.26  Aligned_cols=163  Identities=29%  Similarity=0.457  Sum_probs=128.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++++.||+|+||.||+|.+..+++.||+|.+..........+.+.+|+.+++.++||||+++++++...      
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence            35789999999999999999999999999999999976544445567889999999999999999999999644      


Q ss_pred             CEEEEEEecCCCChHHHhhhccc-------------------------CCccccc-----------cccCC---------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTI-------------------------TSIRPHI-----------KEVGS---------  147 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~-------------------------~~~~~~~-----------~~~g~---------  147 (218)
                      ..+|+||||+++++.+.+.....                         .+++|.+           .+||.         
T Consensus       140 ~~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  219 (464)
T 3ttj_A          140 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  219 (464)
T ss_dssp             CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CCC
T ss_pred             CeEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcc
Confidence            46899999999877666543211                         1333332           23332         


Q ss_pred             --------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          148 --------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       148 --------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                              .|+|||.+. +..++.++|||||||++|+|++|+.||.+. ..+.+..+++.++.+
T Consensus       220 ~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p  282 (464)
T 3ttj_A          220 MTPYVVTRYYRAPEVIL-GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP  282 (464)
T ss_dssp             C----CCCTTCCHHHHT-TCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSC
T ss_pred             cCCCcccccccCHHHHc-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCC
Confidence                    299999554 456899999999999999999999999987 455666666666554

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.95  E-value=3.2e-27  Score=194.69  Aligned_cols=157  Identities=32%  Similarity=0.544  Sum_probs=123.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC---CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN---EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...+.|++.+.||+|+||.||+|.++.+++.||+|++....   ......+.+.+|+.+++.++||||+++++++...+.
T Consensus        21 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  100 (351)
T 3c0i_A           21 LFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGM  100 (351)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             ccccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            44578999999999999999999999999999999986432   222346789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhccc-----C--------------------------Cccccc--------------ccc---
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTI-----T--------------------------SIRPHI--------------KEV---  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~-----~--------------------------~~~~~~--------------~~~---  145 (218)
                      +|+||||+++ +|.+++.....     .                          +++|.+              .++   
T Consensus       101 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a  180 (351)
T 3c0i_A          101 LYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA  180 (351)
T ss_dssp             EEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred             EEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence            9999999986 88877654321     0                          222221              122   


Q ss_pred             --------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 041487          146 --------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       146 --------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~  195 (218)
                                    | ..|+|||. ..+..++.++|||||||++|+|++|+.||.+........+
T Consensus       181 ~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~i  244 (351)
T 3c0i_A          181 IQLGESGLVAGGRVGTPHFMAPEV-VKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGI  244 (351)
T ss_dssp             EECCTTSCBCCCCCSCGGGCCHHH-HTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHHH
T ss_pred             eEecCCCeeecCCcCCcCccCHHH-HcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHHH
Confidence                          2 23999995 4455689999999999999999999999988644333333

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.1e-27  Score=196.91  Aligned_cols=165  Identities=32%  Similarity=0.559  Sum_probs=124.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++.+.||+|+||.||+|.++.+++.||+|.+..........+++.+|+.+++.++||||+++++++...      
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            35789999999999999999999999999999999865444444567889999999999999999999999765      


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------cccCC--------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEVGS--------  147 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g~--------  147 (218)
                      ..+|+||||++++|.+++......                          +++|.+           .++|.        
T Consensus       103 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  182 (367)
T 1cm8_A          103 TDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEM  182 (367)
T ss_dssp             CCCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSC
T ss_pred             ceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeeccccccccc
Confidence            346999999977998887654322                          333322           22322        


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhcccC
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFTALT  203 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~~~~  203 (218)
                             .|+|||.+.....++.++||||+||++|+|++|+.||.+.+ .+.+..+.+..+.++
T Consensus       183 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~  246 (367)
T 1cm8_A          183 TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPP  246 (367)
T ss_dssp             CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCC
T ss_pred             CcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence                   39999977665779999999999999999999999999873 445555555555443

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.95  E-value=1.5e-27  Score=203.06  Aligned_cols=150  Identities=30%  Similarity=0.515  Sum_probs=110.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-----CC
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-----GR  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~  113 (218)
                      ..++|++.+.||+|+||.||+|.++.+++.||||.+..........+++.+|+.+++.++||||+++++++..     ..
T Consensus        51 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           51 IPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             SCTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             cCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            4578999999999999999999999999999999987554444556789999999999999999999999843     35


Q ss_pred             EEEEEEecCCCChHHHhhhcccC---------------------------Cccccc-----------cccC---------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g---------  146 (218)
                      .+|+|||+++++|.+++......                           +++|.+           .+||         
T Consensus       131 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  210 (458)
T 3rp9_A          131 ELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPE  210 (458)
T ss_dssp             CEEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCT
T ss_pred             eEEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCcc
Confidence            79999999998888887654321                           333322           2222         


Q ss_pred             ------------------------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-----------
Q 041487          147 ------------------------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-----------  179 (218)
Q Consensus       147 ------------------------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-----------  179 (218)
                                                          ..|+|||.+.....++.++|||||||++|||++           
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~  290 (458)
T 3rp9_A          211 NGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHAD  290 (458)
T ss_dssp             TCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGG
T ss_pred             ccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcccccccccc
Confidence                                                229999976667779999999999999999999           


Q ss_pred             CCCCCCCCC
Q 041487          180 GKPLFPCGK  188 (218)
Q Consensus       180 g~~Pf~~~~  188 (218)
                      |++||++..
T Consensus       291 ~~p~f~g~~  299 (458)
T 3rp9_A          291 RGPLFPGSS  299 (458)
T ss_dssp             CCCSCC---
T ss_pred             ccccCCCCc
Confidence            788887753

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=187.57  Aligned_cols=150  Identities=37%  Similarity=0.650  Sum_probs=121.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+..........+.+.+|+.++++++||||+++++++...+..++||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF   81 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence            46899999999999999999999999999999998755444445677889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccCC-------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVGS-------------  147 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g~-------------  147 (218)
                      ||+++ +|.++.......                           +++|.+           .++|.             
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  161 (311)
T 4agu_A           82 EYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDD  161 (311)
T ss_dssp             ECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred             EeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCC
Confidence            99997 555555432211                           333322           22222             


Q ss_pred             -----cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          148 -----PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       148 -----~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                           .|+|||.+.....++.++||||||+++|+|++|+.||.+...
T Consensus       162 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  208 (311)
T 4agu_A          162 EVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSD  208 (311)
T ss_dssp             ----GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             CcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence                 289999776667789999999999999999999999988743

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=193.06  Aligned_cols=161  Identities=40%  Similarity=0.688  Sum_probs=124.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++.... ......+.+|+.+++.++||||+++++++......++|||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   80 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc-cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence            679999999999999999999999999999999874432 1222245579999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Cccccc-----------cccC---------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---------------  146 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---------------  146 (218)
                      |++++|.+++......                            +++|.+           .++|               
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~  160 (324)
T 3mtl_A           81 YLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNE  160 (324)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC----------
T ss_pred             ccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccc
Confidence            9999998887654321                            333322           2222               


Q ss_pred             ---CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHHhccc
Q 041487          147 ---SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRYFTAL  202 (218)
Q Consensus       147 ---~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~~~~~~  202 (218)
                         ..|+|||.+.....++.++|||||||++|+|++|+.||.+.+. +.+..+.+.++.+
T Consensus       161 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~  220 (324)
T 3mtl_A          161 VVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTP  220 (324)
T ss_dssp             --CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             cCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence               2399999776667789999999999999999999999998743 4444555544444

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.95  E-value=1e-26  Score=194.53  Aligned_cols=151  Identities=20%  Similarity=0.375  Sum_probs=119.9

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG  112 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~  112 (218)
                      ...+..++|++++.||+|+||.||+|+++.+++.||+|++++... .....+.+.+|..++.++ +||||+++++++...
T Consensus        46 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~  125 (396)
T 4dc2_A           46 SSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE  125 (396)
T ss_dssp             ---CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCCChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEEC
Confidence            345677899999999999999999999999999999999986543 334456788899999887 899999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------  146 (218)
                      ..+|+||||+++ +|.+++......                           +++|.+           .++|       
T Consensus       126 ~~~~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~  205 (396)
T 4dc2_A          126 SRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  205 (396)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             CEEEEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence            999999999987 888887654321                           333322           2222       


Q ss_pred             ----------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 ----------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 ----------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                + .|+|||. ..+..++.++|||||||++|+|++|+.||..
T Consensus       206 ~~~~~~~~~gt~~Y~aPE~-l~~~~~~~~~DiwslGvllyell~G~~Pf~~  255 (396)
T 4dc2_A          206 PGDTTSTFCGTPNYIAPEI-LRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  255 (396)
T ss_dssp             TTCCBCCCCBCGGGCCHHH-HTTCCBCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred             CCCccccccCCcccCCchh-hcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence                      2 3999995 4556689999999999999999999999964

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.95  E-value=6.1e-27  Score=193.26  Aligned_cols=164  Identities=21%  Similarity=0.314  Sum_probs=127.1

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT  111 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~  111 (218)
                      ....+..++|++++.||+|+||.||+|+++.+++.||+|++++.. ......+.+.+|..++..+ .||+|+++++++..
T Consensus        13 ~~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~   92 (353)
T 2i0e_A           13 NRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT   92 (353)
T ss_dssp             ------CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC
T ss_pred             CcCCCchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc
Confidence            344567889999999999999999999999899999999997643 2334567888999999888 89999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc-------
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV-------  145 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~-------  145 (218)
                      ...+|+||||+++ +|.+++......                           +++|.+           .++       
T Consensus        93 ~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~  172 (353)
T 2i0e_A           93 MDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  172 (353)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence            9999999999987 998888653321                           333322           222       


Q ss_pred             ----------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          146 ----------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 ----------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                                |+ .|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+...+...+..
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~  235 (353)
T 2i0e_A          173 WDGVTTKTFCGTPDYIAPEII-AYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIME  235 (353)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHH-TTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             cCCcccccccCCccccChhhh-cCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHh
Confidence                      22 39999954 555689999999999999999999999998766555554443

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.95  E-value=8.1e-28  Score=197.27  Aligned_cols=150  Identities=29%  Similarity=0.415  Sum_probs=121.8

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..++|.+.+.||+|+||.||+|.+..+++.||+|++.... ......+.+.+|+.+++.++||||+++++++......++
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   86 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM   86 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            4578999999999999999999999999999999997543 223345678999999999999999999999999999999


Q ss_pred             EEecCCCChHHHhhhcccC---------------------------Cccccc-----------cccC-------------
Q 041487          118 VFEYLDLDLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------------  146 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------------  146 (218)
                      ||||++++|.+++......                           +++|.+           .++|             
T Consensus        87 v~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~  166 (336)
T 3h4j_B           87 VIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKT  166 (336)
T ss_dssp             EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCC
T ss_pred             EEECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCccccc
Confidence            9999988998887654321                           333322           2222             


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                          ..|+|||.+......+.++|||||||++|+|++|+.||....
T Consensus       167 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~  212 (336)
T 3h4j_B          167 SCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEF  212 (336)
T ss_dssp             CTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSS
T ss_pred             ccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCcc
Confidence                239999966544445789999999999999999999998753

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.4e-26  Score=188.64  Aligned_cols=154  Identities=25%  Similarity=0.437  Sum_probs=124.2

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.++.++..+|+|.+...   ......+.+|+.+++.++||||+++++++.....+++||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~   80 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIF   80 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC---cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEE
Confidence            57899999999999999999999999999999998632   334567889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Cccccc-------------cccCC----------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPHI-------------KEVGS----------  147 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-------------~~~g~----------  147 (218)
                      ||+++ +|.+++......                            +++|.+             .++|.          
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~  160 (321)
T 1tki_A           81 EFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF  160 (321)
T ss_dssp             CCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE
T ss_pred             EeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCcc
Confidence            99987 999988654311                            333322             22222          


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                             .|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+.
T Consensus       161 ~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~  216 (321)
T 1tki_A          161 RLLFTAPEYYAPEVH-QHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIM  216 (321)
T ss_dssp             EEEESCGGGSCHHHH-TTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH
T ss_pred             ccccCChhhcCcHHh-cCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHH
Confidence                   29999954 45558999999999999999999999998875554444443

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.95  E-value=2.8e-27  Score=200.36  Aligned_cols=159  Identities=22%  Similarity=0.322  Sum_probs=125.6

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++.+.||+|+||.||+|+++.+++.||+|++++.. ......+.+.+|..++..++||||++++++|.+...+
T Consensus        70 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~  149 (437)
T 4aw2_A           70 RLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNL  149 (437)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEE
T ss_pred             cCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEE
Confidence            355688999999999999999999999999999999997532 1223345588999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------ccc----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEV----------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~----------  145 (218)
                      |+||||+++ +|.+++......                            +++|.+           .++          
T Consensus       150 ~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~  229 (437)
T 4aw2_A          150 YLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG  229 (437)
T ss_dssp             EEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred             EEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCC
Confidence            999999976 999988663211                            333322           222          


Q ss_pred             --------CC-cccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 041487          146 --------GS-PYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLI  195 (218)
Q Consensus       146 --------g~-~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~  195 (218)
                              |+ .|+|||.+..    ...++.++|||||||++|||++|+.||.+.+.......
T Consensus       230 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~  292 (437)
T 4aw2_A          230 TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGK  292 (437)
T ss_dssp             CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHH
T ss_pred             CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHh
Confidence                    22 3999997652    45589999999999999999999999998754444333

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.95  E-value=1e-26  Score=193.88  Aligned_cols=151  Identities=20%  Similarity=0.321  Sum_probs=125.3

Q ss_pred             hhccceeEEEEeeec--CceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           38 VKDWNYKVVEKIGQG--VFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G--~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      ...++|++.+.||+|  +||.||+|.++.+++.||+|.+..........+.+.+|+.+++.++||||+++++++...+.+
T Consensus        22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  101 (389)
T 3gni_B           22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL  101 (389)
T ss_dssp             CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence            456789999999999  999999999999999999999987655555677889999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV---------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~---------  145 (218)
                      ++||||+++ +|.+++......                             +++|.+           .++         
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~  181 (389)
T 3gni_B          102 WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISH  181 (389)
T ss_dssp             EEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEET
T ss_pred             EEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccc
Confidence            999999986 898888654211                             333332           111         


Q ss_pred             ----------------CCcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----------------GSPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----------------g~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                      +..|+|||.+... ..++.++|||||||++|+|++|+.||.+.+
T Consensus       182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  241 (389)
T 3gni_B          182 GQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMP  241 (389)
T ss_dssp             TEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             cccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCC
Confidence                            1238999976553 568999999999999999999999998763

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.94  E-value=1.2e-26  Score=190.93  Aligned_cols=149  Identities=21%  Similarity=0.373  Sum_probs=121.4

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~  114 (218)
                      .+..++|++++.||+|+||.||+|+++.+++.||+|++++.... ....+.+.+|..++..+ +||||+++++++.....
T Consensus         5 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~   84 (345)
T 3a8x_A            5 PLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR   84 (345)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             CCchhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCE
Confidence            35578899999999999999999999999999999999865433 34456788999999988 89999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc-----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE-----------  144 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~-----------  144 (218)
                      +|+||||+++ +|.+++......                           +++|.+           .+           
T Consensus        85 ~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~  164 (345)
T 3a8x_A           85 LFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  164 (345)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT
T ss_pred             EEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCC
Confidence            9999999986 888887654321                           233322           11           


Q ss_pred             ------cCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          145 ------VGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       145 ------~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                            .|+ .|+|||.+ .+..++.++|||||||++|+|++|+.||..
T Consensus       165 ~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~g~~pf~~  212 (345)
T 3a8x_A          165 DTTSTFCGTPNYIAPEIL-RGEDYGFSVDWWALGVLMFEMMAGRSPFDI  212 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             CcccccCCCccccCcccc-CCCCCChHHhHHHHHHHHHHHHhCCCCcCC
Confidence                  122 39999954 455689999999999999999999999975

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.94  E-value=2.2e-26  Score=187.89  Aligned_cols=183  Identities=23%  Similarity=0.356  Sum_probs=127.1

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCC--CCCchHHHHHHHHHHhhCCCCCeeeeeee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNE--PEGVPSYLIAGVSLLKELEHDNIVRLLDV  108 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~  108 (218)
                      ....+..++|++.+.||+|+||.||+|.+.   .+++.||+|++++...  .......+.+|+.+++.++||||++++++
T Consensus        10 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~   89 (327)
T 3a62_A           10 GPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYA   89 (327)
T ss_dssp             ---CCCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEE
T ss_pred             CCCCCCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEE
Confidence            344567889999999999999999999975   5789999999976532  22345678899999999999999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC---
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG---  146 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g---  146 (218)
                      +...+.+|+||||+++ +|.+++......                           +++|.+           .++|   
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~  169 (327)
T 3a62_A           90 FQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCK  169 (327)
T ss_dssp             EECSSCEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred             EEcCCEEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence            9999999999999986 888887654321                           233322           2222   


Q ss_pred             ---------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhccc-C--cccch
Q 041487          147 ---------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTAL-T--NYLVL  208 (218)
Q Consensus       147 ---------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~-~--~~~~~  208 (218)
                                     ..|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+.......+...... +  .+..+
T Consensus       170 ~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~  248 (327)
T 3a62_A          170 ESIHDGTVTHTFCGTIEYMAPEIL-MRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEA  248 (327)
T ss_dssp             ---------CTTSSCCTTSCHHHH-TTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHH
T ss_pred             ccccCCccccccCCCcCccCHhhC-cCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHH
Confidence                           239999954 4555899999999999999999999999887554444333322111 1  13334


Q ss_pred             hhhhhhccc
Q 041487          209 PCFLSIMLL  217 (218)
Q Consensus       209 ~~~~~~~l~  217 (218)
                      .+++..||.
T Consensus       249 ~~li~~~L~  257 (327)
T 3a62_A          249 RDLLKKLLK  257 (327)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHHh
Confidence            455555553

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.94  E-value=1e-26  Score=196.66  Aligned_cols=142  Identities=31%  Similarity=0.523  Sum_probs=116.6

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----C
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----R  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~  113 (218)
                      ..++|++.+.||+|+||.||+|.++.+++.||||.+..........+++.+|+.+++.++||||+++++++...     .
T Consensus        24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            46789999999999999999999999999999999975544445567899999999999999999999999765     5


Q ss_pred             EEEEEEecCCCChHHHhhhcccC---------------------------Cccccc-----------cccC---------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g---------  146 (218)
                      .+|+||||++++|.+++......                           +++|.+           .++|         
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~  183 (432)
T 3n9x_A          104 ELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEK  183 (432)
T ss_dssp             CEEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC----
T ss_pred             eEEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCcccccccc
Confidence            79999999999998888764321                           233322           1222         


Q ss_pred             -------------------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhC
Q 041487          147 -------------------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG  180 (218)
Q Consensus       147 -------------------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg  180 (218)
                                                     ..|+|||.+.....++.++|||||||++|+|++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g  248 (432)
T 3n9x_A          184 DTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNM  248 (432)
T ss_dssp             ---------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhc
Confidence                                           2399999766777799999999999999999984

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.94  E-value=1e-26  Score=193.26  Aligned_cols=162  Identities=21%  Similarity=0.381  Sum_probs=119.1

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHH-HhhCCCCCeeeeeeeEEeC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSL-LKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~-l~~l~h~~iv~~~~~~~~~  112 (218)
                      ...+..++|++++.||+|+||.||+|+++.++..||+|++++... .......+.+|..+ ++.++||||+++++++...
T Consensus        32 ~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~  111 (373)
T 2r5t_A           32 NPHAKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA  111 (373)
T ss_dssp             CTTCCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECS
T ss_pred             CCCCChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeC
Confidence            345677899999999999999999999999999999999986542 23344566777776 5678999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc--------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV--------  145 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~--------  145 (218)
                      ..+|+||||+++ +|.+++......                           +++|.+           .++        
T Consensus       112 ~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~  191 (373)
T 2r5t_A          112 DKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  191 (373)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred             CEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence            999999999987 888887653321                           333322           122        


Q ss_pred             ---------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          146 ---------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 ---------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                               |+ .|+|||. ..+..++.++|||||||++|+|++|+.||.+.+...+...+.
T Consensus       192 ~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~  252 (373)
T 2r5t_A          192 HNSTTSTFCGTPEYLAPEV-LHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNIL  252 (373)
T ss_dssp             CCCCCCSBSCCCCCCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHH
T ss_pred             CCCccccccCCccccCHHH-hCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence                     22 3999995 455668999999999999999999999998876555544443

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.94  E-value=2.1e-26  Score=190.50  Aligned_cols=147  Identities=26%  Similarity=0.327  Sum_probs=118.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|.+.....   ..+.+.+|+.+++.++||||+++++++......++
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l   93 (361)
T 3uc3_A           17 HDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA---IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAI   93 (361)
T ss_dssp             CCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT---SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc---ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEE
Confidence            456789999999999999999999999999999999975432   23678899999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Cccc-------------cccccCC---------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRP-------------HIKEVGS---------  147 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~-------------~~~~~g~---------  147 (218)
                      ||||+++ +|.+++......                           +++|             ++.++|.         
T Consensus        94 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~  173 (361)
T 3uc3_A           94 IMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQ  173 (361)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCC
Confidence            9999976 998887653321                           2222             2233332         


Q ss_pred             --------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 --------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 --------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              .|+|||.+......+.++|||||||++|+|++|+.||...
T Consensus       174 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (361)
T 3uc3_A          174 PKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDP  221 (361)
T ss_dssp             -------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC--
T ss_pred             CCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCC
Confidence                    3999997665554445599999999999999999999876

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.94  E-value=3.1e-26  Score=182.76  Aligned_cols=158  Identities=30%  Similarity=0.493  Sum_probs=128.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.++.++..||+|++..........+.+.+|+.++++++||||+++++++......+++|
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            57899999999999999999999999999999999866555555678899999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccCC----------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVGS----------  147 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g~----------  147 (218)
                      ||+++ +|.+++......                           +++|.              +.++|.          
T Consensus        85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~  164 (284)
T 3kk8_A           85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW  164 (284)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBC
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccc
Confidence            99987 887776554321                           22222              222222          


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             .|+|||.+ .+..++.++||||||+++|+|++|+.||...+.......+..
T Consensus       165 ~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~  221 (284)
T 3kk8_A          165 HGFAGTPGYLSPEVL-KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKA  221 (284)
T ss_dssp             CCSCSCGGGCCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             cCCCCCcCCcCchhh-cCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHh
Confidence                   29999954 555689999999999999999999999988765555555444

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.9e-27  Score=198.08  Aligned_cols=157  Identities=26%  Similarity=0.395  Sum_probs=125.3

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++.+.||+|+||.||+|+++.+++.||+|++++.. ......+.+.+|..++..++||||+++++++.+...+
T Consensus        57 ~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~  136 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYL  136 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEE
T ss_pred             cCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEE
Confidence            356789999999999999999999999999999999997532 1223345688999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cc-----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KE-----------  144 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~-----------  144 (218)
                      |+||||+++ +|.+++......                            +++|.+           .+           
T Consensus       137 ~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~  216 (412)
T 2vd5_A          137 YLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG  216 (412)
T ss_dssp             EEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred             EEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccCCC
Confidence            999999976 999998764311                            333322           11           


Q ss_pred             -------cCC-cccCcccccC------CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          145 -------VGS-PYKAPESRIR------SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       145 -------~g~-~y~aPE~~~~------~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                             .|+ .|+|||.+..      ...++.++|||||||++|+|++|+.||...+.....
T Consensus       217 ~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~  279 (412)
T 2vd5_A          217 TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETY  279 (412)
T ss_dssp             CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH
T ss_pred             ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHH
Confidence                   222 3999997653      345899999999999999999999999887554443

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.94  E-value=9e-27  Score=193.28  Aligned_cols=149  Identities=30%  Similarity=0.500  Sum_probs=120.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-----
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-----  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----  113 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+..........+.+.+|+.+++.++||||+++++++....     
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~  102 (371)
T 2xrw_A           23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  102 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred             hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence            357899999999999999999999999999999999865444455677889999999999999999999997654     


Q ss_pred             -EEEEEEecCCCChHHHhhhcccC-------------------------Cccccc-----------cccC----------
Q 041487          114 -YVYLVFEYLDLDLGSFIRKHTIT-------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       114 -~~~lv~E~~~~~L~~~~~~~~~~-------------------------~~~~~~-----------~~~g----------  146 (218)
                       ..++||||++++|.+++......                         +++|.+           .++|          
T Consensus       103 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~  182 (371)
T 2xrw_A          103 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  182 (371)
T ss_dssp             CEEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC---------
T ss_pred             cceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccccccccc
Confidence             79999999998887776432111                         333322           2222          


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                             ..|+|||.+. +..++.++|||||||++|+|++|+.||.+.+
T Consensus       183 ~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il~el~~g~~pf~~~~  230 (371)
T 2xrw_A          183 MTPYVVTRYYRAPEVIL-GMGYKENVDIWSVGCIMGEMIKGGVLFPGTD  230 (371)
T ss_dssp             -------CTTCCHHHHT-TCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cCCceecCCccCHHHhc-CCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence                   2399999554 5568999999999999999999999998874

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.94  E-value=1.6e-26  Score=187.29  Aligned_cols=161  Identities=24%  Similarity=0.337  Sum_probs=126.1

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .....+..++|++.+.||+|+||.||+|.+  .+..||+|++..........+.+.+|+.++++++||||+++++++...
T Consensus        29 ~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  106 (309)
T 3p86_A           29 GDDMDIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP  106 (309)
T ss_dssp             ---CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred             cccccCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC
Confidence            444556788999999999999999999976  788999999976544445567889999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc--------------------------------CCccccc-----------cccC--
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI--------------------------------TSIRPHI-----------KEVG--  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~--------------------------------~~~~~~~-----------~~~g--  146 (218)
                      ...++||||+++ +|.+++.....                                .++++.+           .++|  
T Consensus       107 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a  186 (309)
T 3p86_A          107 PNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS  186 (309)
T ss_dssp             TCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC--
T ss_pred             CceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCC
Confidence            999999999987 89888764321                                0222221           2232  


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                                      ..|+|||. ..+..++.++|||||||++|+|++|+.||...+.......+
T Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~  251 (309)
T 3p86_A          187 RLKASTFLSSKSAAGTPEWMAPEV-LRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAV  251 (309)
T ss_dssp             ---------------CCTTSCHHH-HTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHH
T ss_pred             ccccccccccccCCCCccccChhh-hcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                            23999995 45556899999999999999999999999887555544443

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.94  E-value=1.4e-26  Score=188.99  Aligned_cols=166  Identities=34%  Similarity=0.554  Sum_probs=127.1

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .+......++|++.+.||+|+||.||+|.+..+++.||+|.+..........+.+.+|+.+++.++||||+++++++...
T Consensus        17 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   96 (331)
T 4aaa_A           17 ENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK   96 (331)
T ss_dssp             --CCCBCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             chhhhhhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC
Confidence            44455567899999999999999999999999999999999876544444566788999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------  146 (218)
                      ...++||||+++ .|.++.......                           +++|.+           .++|       
T Consensus        97 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  176 (331)
T 4aaa_A           97 KRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  176 (331)
T ss_dssp             TEEEEEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             CEEEEEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecC
Confidence            999999999987 444443322111                           233322           2222       


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHH
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRY  198 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~  198 (218)
                                 ..|+|||.+.....++.++|||||||++|+|++|+.||...+ .+.+..+...
T Consensus       177 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~  240 (331)
T 4aaa_A          177 PGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMC  240 (331)
T ss_dssp             -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             CccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence                       229999976655568999999999999999999999998873 3344444433

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.94  E-value=3.8e-26  Score=196.18  Aligned_cols=158  Identities=32%  Similarity=0.473  Sum_probs=122.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..+.|++.+.||+|+||.||+|.++.++..+|+|++++........+.+.+|+.+++.++||||+++++++......++|
T Consensus        35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  114 (494)
T 3lij_A           35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV  114 (494)
T ss_dssp             HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            34579999999999999999999999999999999987655555568899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccC----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVG----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g----------  146 (218)
                      ||||.+ +|.+++......                           +++|.              +.++|          
T Consensus       115 ~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~  194 (494)
T 3lij_A          115 MECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK  194 (494)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBC
T ss_pred             EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCcc
Confidence            999987 888776543221                           22222              22232          


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             ..|+|||.+ . +.++.++||||+||++|+|++|+.||.+.....+...+..
T Consensus       195 ~~~~~gt~~y~aPE~l-~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~  251 (494)
T 3lij_A          195 MKERLGTAYYIAPEVL-R-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEK  251 (494)
T ss_dssp             BCCCCSCTTTCCHHHH-T-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             ccccCCCcCeeCHHHH-c-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence                   239999964 3 3489999999999999999999999998866655555554

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.94  E-value=3.1e-27  Score=196.47  Aligned_cols=173  Identities=26%  Similarity=0.379  Sum_probs=133.5

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...+..++|.+.+.||+|+||.||+|.++.++..||+|.++.. ......+.+.+|+.+++.++||||+++++++.....
T Consensus       108 ~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  186 (377)
T 3cbl_A          108 KWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET-LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP  186 (377)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT-SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             ccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc-CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC
Confidence            4557788999999999999999999999889999999998743 222334568899999999999999999999999899


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      +++||||+++ +|.+++......                            +++|.+           .++|        
T Consensus       187 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~  266 (377)
T 3cbl_A          187 IYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADG  266 (377)
T ss_dssp             CEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTS
T ss_pred             cEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCC
Confidence            9999999986 999988754321                            333322           2222        


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchh
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                  ..|+|||.+. +..++.++|||||||++|||+| |+.||...........+.....++.+...|
T Consensus       267 ~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (377)
T 3cbl_A          267 VYAASGGLRQVPVKWTAPEALN-YGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCP  341 (377)
T ss_dssp             EEECCSSCCEEEGGGSCHHHHH-HCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCC
T ss_pred             ceeecCCCCCCCcCcCCHhHhc-cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCC
Confidence                        1299999554 4558999999999999999999 999999886666655555444443333333

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.94  E-value=8.4e-26  Score=182.71  Aligned_cols=148  Identities=23%  Similarity=0.389  Sum_probs=121.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      .+..++|.+.+.||+|+||.||+|.+..++..||+|.+..  ......+.+.+|+.++++++||||+++++++......+
T Consensus         6 ~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   83 (310)
T 3s95_A            6 IFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIR--FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLN   83 (310)
T ss_dssp             EECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESC--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             eeChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEecc--CCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeE
Confidence            3567899999999999999999999999999999998853  23445678999999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccCC---------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVGS---------  147 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g~---------  147 (218)
                      +||||+++ +|.+++......                            ++++.           +.++|.         
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  163 (310)
T 3s95_A           84 FITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT  163 (310)
T ss_dssp             EEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred             EEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence            99999987 999988763211                            22322           122222         


Q ss_pred             -----------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 -----------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 -----------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                             .|+|||. ..+..++.++||||||+++|+|++|..||...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~  225 (310)
T 3s95_A          164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEM-INGRSYDEKVDVFSFGIVLCEIIGRVNADPDY  225 (310)
T ss_dssp             ----------------CCCCSCGGGCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTT
T ss_pred             cccccccccccccccccccCCCcceeCHHH-hcCCCCCcHHHHHHHHHHHHHHhcCCCCCcch
Confidence                                   2999995 45666899999999999999999999999764

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.94  E-value=3.1e-26  Score=182.03  Aligned_cols=185  Identities=26%  Similarity=0.358  Sum_probs=134.6

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      .....+..++|++.+.||+|+||.||+|.+..+++.||+|.+.... ......+.+.+|+.+++.++||||+++++++..
T Consensus         3 ~~~g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   82 (276)
T 2h6d_A            3 KHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIST   82 (276)
T ss_dssp             ----CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             cccCcceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEec
Confidence            3444567789999999999999999999998899999999987542 233456789999999999999999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC------
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g------  146 (218)
                      .+..++||||+++ +|.+++......                           ++++.+           .++|      
T Consensus        83 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~  162 (276)
T 2h6d_A           83 PTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS  162 (276)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCC
T ss_pred             CCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccC
Confidence            9999999999976 999988654321                           222221           2222      


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc---ccchhhhh
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN---YLVLPCFL  212 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  212 (218)
                                 ..|+|||.+......+.++||||||+++|+|++|+.||.......+...+.......+   +..+.+++
T Consensus       163 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  242 (276)
T 2h6d_A          163 DGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLL  242 (276)
T ss_dssp             C-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             CCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHH
Confidence                       2399999665544456899999999999999999999988765555544443221111   33344555


Q ss_pred             hhccc
Q 041487          213 SIMLL  217 (218)
Q Consensus       213 ~~~l~  217 (218)
                      ..||+
T Consensus       243 ~~~l~  247 (276)
T 2h6d_A          243 MHMLQ  247 (276)
T ss_dssp             HHHTC
T ss_pred             HHHcc
Confidence            55553

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.94  E-value=3.5e-26  Score=196.06  Aligned_cols=159  Identities=31%  Similarity=0.472  Sum_probs=127.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|++.+........+.+.+|+.++++++||||+++++++.....+++
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l   98 (486)
T 3mwu_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI   98 (486)
T ss_dssp             HHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEE
Confidence            34678999999999999999999999999999999997654444557889999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccC---------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVG---------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g---------  146 (218)
                      ||||+.+ +|.+++......                           +++|.              +.++|         
T Consensus        99 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~  178 (486)
T 3mwu_A           99 VGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT  178 (486)
T ss_dssp             EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-
T ss_pred             EEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC
Confidence            9999987 888777543221                           33332              22222         


Q ss_pred             -------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 -------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             + .|+|||.+. + .++.++|||||||++|+|++|++||.+.+...+...+..
T Consensus       179 ~~~~~~gt~~y~aPE~~~-~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~  236 (486)
T 3mwu_A          179 KMKDRIGTAYYIAPEVLR-G-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVET  236 (486)
T ss_dssp             ---CCTTGGGGCCGGGGG-S-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             ccCCCcCCCCCCCHHHhC-C-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence                   1 299999654 3 389999999999999999999999998765555554444

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.94  E-value=6.9e-26  Score=195.06  Aligned_cols=158  Identities=32%  Similarity=0.490  Sum_probs=123.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-----------CCchHHHHHHHHHHhhCCCCCeeeeee
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-----------EGVPSYLIAGVSLLKELEHDNIVRLLD  107 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-----------~~~~~~~~~e~~~l~~l~h~~iv~~~~  107 (218)
                      ..++|.+.+.||+|+||.||+|.++.++..||+|++++....           ....+.+.+|+.++++++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            467899999999999999999999999999999999764422           144678999999999999999999999


Q ss_pred             eEEeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc--------------cccc
Q 041487          108 VLTTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEV  145 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~  145 (218)
                      ++.....+++|||||++ +|.+++......                           +++|.              +.++
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Df  193 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDF  193 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCC
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEEC
Confidence            99999999999999987 888877553321                           22222              2223


Q ss_pred             C-----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          146 G-----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       146 g-----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                      |                 ..|+|||.+. + .++.++||||+||++|+|++|+.||.+.+...+...+..
T Consensus       194 g~a~~~~~~~~~~~~~gt~~y~aPE~~~-~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~  261 (504)
T 3q5i_A          194 GLSSFFSKDYKLRDRLGTAYYIAPEVLK-K-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEK  261 (504)
T ss_dssp             TTCEECCTTSCBCCCCSCTTTCCHHHHT-T-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCEEcCCCCccccccCCcCCCCHHHhc-c-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHc
Confidence            2                 2399999643 3 489999999999999999999999998866555555444

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.94  E-value=6.6e-27  Score=193.99  Aligned_cols=164  Identities=31%  Similarity=0.571  Sum_probs=120.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------  112 (218)
                      ..++|++++.||+|+||.||+|.+..+++.||+|.+..........+.+.+|+.+++.++||||+++++++...      
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            45789999999999999999999999999999999875444444567888999999999999999999998653      


Q ss_pred             CEEEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------cccC---------
Q 041487          113 RYVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g---------  146 (218)
                      ...++++|+++++|.+++......                          +++|.+           .++|         
T Consensus       107 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~  186 (367)
T 2fst_X          107 NDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEM  186 (367)
T ss_dssp             CCCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC-----------
T ss_pred             CeEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccccccccC
Confidence            568999999987887776543221                          333322           2222         


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhccc
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFTAL  202 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~~~  202 (218)
                            ..|+|||.+.....++.++|||||||++|+|++|+.||.+.+ .+.+..+.+..+.+
T Consensus       187 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p  249 (367)
T 2fst_X          187 TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP  249 (367)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSC
T ss_pred             CCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence                  238999976665679999999999999999999999999873 34555555555544

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.94  E-value=1.8e-26  Score=190.09  Aligned_cols=149  Identities=23%  Similarity=0.371  Sum_probs=120.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..|.+.+.||+|+||.||+|.+..+++.||+|.+..... .....+.+.+|+.++++++||||+++++++......++||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            459999999999999999999989999999999975432 2233567889999999999999999999999999999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Cccccc-----------cccCC-------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS-------------  147 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~-------------  147 (218)
                      ||+.+++.+++......                            +++|.+           .++|.             
T Consensus       134 e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt  213 (348)
T 1u5q_A          134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGT  213 (348)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSC
T ss_pred             ecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCC
Confidence            99999888877542211                            333322           23332             


Q ss_pred             -cccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          148 -PYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       148 -~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                       .|+|||.+.  ....++.++|||||||++|+|++|+.||...+.
T Consensus       214 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~  258 (348)
T 1u5q_A          214 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA  258 (348)
T ss_dssp             GGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             cceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence             399999764  355689999999999999999999999987643

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.94  E-value=1.5e-26  Score=197.70  Aligned_cols=182  Identities=26%  Similarity=0.346  Sum_probs=136.6

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..+..++|.+.+.||+|+||.||+|.+..+++.||+|++.... ......+.+.+|+.+++.++||||+++++++.....
T Consensus        11 ~~~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~   90 (476)
T 2y94_A           11 GRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSD   90 (476)
T ss_dssp             SCCEETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             CCceecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            3456789999999999999999999999999999999997543 223446789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV----------  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~----------  145 (218)
                      +++||||+++ +|.+++......                           +++|.+           .++          
T Consensus        91 ~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~  170 (476)
T 2y94_A           91 IFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE  170 (476)
T ss_dssp             EEEEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred             EEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence            9999999976 999988654321                           333322           222          


Q ss_pred             ------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccC---cccchhhhhhhc
Q 041487          146 ------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT---NYLVLPCFLSIM  215 (218)
Q Consensus       146 ------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  215 (218)
                            | ..|+|||.+......+.++|||||||++|+|++|+.||...+...+...+.......   .+..+-+++..|
T Consensus       171 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~  250 (476)
T 2y94_A          171 FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHM  250 (476)
T ss_dssp             CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHH
T ss_pred             cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHHHHHH
Confidence                  2 239999966555545789999999999999999999999876555544443322111   123344555555


Q ss_pred             cc
Q 041487          216 LL  217 (218)
Q Consensus       216 l~  217 (218)
                      |+
T Consensus       251 L~  252 (476)
T 2y94_A          251 LQ  252 (476)
T ss_dssp             TC
T ss_pred             cC
Confidence            53

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.94  E-value=2.8e-26  Score=187.00  Aligned_cols=148  Identities=27%  Similarity=0.488  Sum_probs=117.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.++.+++.||+|++..... ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~   84 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   84 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc-cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence            4789999999999999999999999999999999975432 223467889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG--------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g--------------  146 (218)
                      ||+++ +|.+++......                           ++++.+           .++|              
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  164 (323)
T 3tki_A           85 EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL  164 (323)
T ss_dssp             ECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCB
T ss_pred             EcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCccccc
Confidence            99987 888887654221                           333322           2222              


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                            ..|+|||.+.....++.++|||||||++|+|++|+.||....
T Consensus       165 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  212 (323)
T 3tki_A          165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  212 (323)
T ss_dssp             CSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSC
T ss_pred             CCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence                  239999976655555789999999999999999999998763

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.94  E-value=9e-27  Score=188.66  Aligned_cols=156  Identities=22%  Similarity=0.365  Sum_probs=122.5

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC--
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR--  113 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--  113 (218)
                      ....++|++.+.||+|+||.||+|.+..+++.||+|+++...... .....+.+|+.++++++||||+++++++....  
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   87 (311)
T 3ork_A            8 SHLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA   87 (311)
T ss_dssp             SEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETT
T ss_pred             ceecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCC
Confidence            345688999999999999999999999999999999997654322 34567889999999999999999999986543  


Q ss_pred             --EEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc-------
Q 041487          114 --YVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV-------  145 (218)
Q Consensus       114 --~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~-------  145 (218)
                        ..|+||||+++ +|.+++......                           ++++.+           .++       
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~  167 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA  167 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC----
T ss_pred             CcccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCccccc
Confidence              45999999986 999888654321                           233322           222       


Q ss_pred             --------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          146 --------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       146 --------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                                    ...|+|||.+ .+..++.++|||||||++|+|++|+.||.+.......
T Consensus       168 ~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~  228 (311)
T 3ork_A          168 DSGNSVTQTAAVIGTAQYLSPEQA-RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA  228 (311)
T ss_dssp             --------------CCTTCCHHHH-HTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             ccccccccccccCcCcccCCHHHh-cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence                          2239999955 4556899999999999999999999999887554443

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.94  E-value=1.2e-25  Score=182.88  Aligned_cols=155  Identities=25%  Similarity=0.404  Sum_probs=124.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..+.|++.+.||+|+||.||+|.+..++..||+|.+.......    ...+.+.+|+.+++.++||||+++++++.....
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   89 (321)
T 2a2a_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD   89 (321)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence            3577999999999999999999999999999999998654322    236789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccc---------------cccccC-----
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP---------------HIKEVG-----  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~---------------~~~~~g-----  146 (218)
                      .++||||+++ +|.+++......                           +++|               .+.++|     
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~  169 (321)
T 2a2a_A           90 VVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI  169 (321)
T ss_dssp             EEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEEC
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceec
Confidence            9999999976 999988654321                           2222               222222     


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                                  ..|+|||. ..+..++.++|||||||++|+|++|+.||.+........
T Consensus       170 ~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~  228 (321)
T 2a2a_A          170 EDGVEFKNIFGTPEFVAPEI-VNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA  228 (321)
T ss_dssp             CTTCCCCCCCSCGGGCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHH
T ss_pred             CccccccccCCCCCccCccc-ccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence                        12999995 455668999999999999999999999998775444333

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.94  E-value=3.8e-26  Score=183.72  Aligned_cols=160  Identities=25%  Similarity=0.409  Sum_probs=116.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC------------------------CCchHHHHHHHHH
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP------------------------EGVPSYLIAGVSL   93 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~------------------------~~~~~~~~~e~~~   93 (218)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|++......                        ....+.+.+|+.+
T Consensus        10 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   89 (298)
T 2zv2_A           10 VQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAI   89 (298)
T ss_dssp             CEETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHH
T ss_pred             eeecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHH
Confidence            5568899999999999999999999999999999999754321                        1224678899999


Q ss_pred             HhhCCCCCeeeeeeeEEe--CCEEEEEEecCCC-ChHHHhhhcccC--------------------------Cccccc--
Q 041487           94 LKELEHDNIVRLLDVLTT--GRYVYLVFEYLDL-DLGSFIRKHTIT--------------------------SIRPHI--  142 (218)
Q Consensus        94 l~~l~h~~iv~~~~~~~~--~~~~~lv~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~--  142 (218)
                      +++++||||+++++++..  ...+++||||+++ +|.++.......                          +++|.+  
T Consensus        90 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil  169 (298)
T 2zv2_A           90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLL  169 (298)
T ss_dssp             HHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             HHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE
Confidence            999999999999999986  6789999999975 555543221111                          233322  


Q ss_pred             ---------cccC------------------CcccCcccccCCCC--CCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          143 ---------KEVG------------------SPYKAPESRIRSSV--YSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       143 ---------~~~g------------------~~y~aPE~~~~~~~--~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                               .++|                  ..|+|||.+.....  ++.++|||||||++|+|++|+.||...+...+.
T Consensus       170 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~  249 (298)
T 2zv2_A          170 VGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLH  249 (298)
T ss_dssp             ECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             ECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHH
Confidence                     2222                  23999996554432  467899999999999999999999877555544


Q ss_pred             HHHH
Q 041487          194 LIVR  197 (218)
Q Consensus       194 ~~~~  197 (218)
                      ..+.
T Consensus       250 ~~~~  253 (298)
T 2zv2_A          250 SKIK  253 (298)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.94  E-value=1.8e-26  Score=195.80  Aligned_cols=180  Identities=19%  Similarity=0.278  Sum_probs=127.4

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++.+.||+|+||.||+|.++.+++.||+|+++... ........+.+|+.+++.++||||+++++++...+.+
T Consensus       144 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  223 (446)
T 4ejn_A          144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRL  223 (446)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEE
T ss_pred             CCChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEE
Confidence            345688999999999999999999999999999999997543 2334456788999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---------  146 (218)
                      ++||||+++ +|.+++......                            +++|.+           .+||         
T Consensus       224 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  303 (446)
T 4ejn_A          224 CFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG  303 (446)
T ss_dssp             EEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC--
T ss_pred             EEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCC
Confidence            999999987 887776543221                            333322           2232         


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccC---cccchhhhhhh
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT---NYLVLPCFLSI  214 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  214 (218)
                               ..|+|||.+ .+..++.++|||||||++|+|++|+.||...+...+...+.......   .+..+.++++.
T Consensus       304 ~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~  382 (446)
T 4ejn_A          304 ATMKTFCGTPEYLAPEVL-EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSG  382 (446)
T ss_dssp             ---CCSSSCGGGCCHHHH-HTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHH
T ss_pred             cccccccCCccccCHhhc-CCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHH
Confidence                     239999954 55568999999999999999999999999876666655554432221   23334455666


Q ss_pred             ccc
Q 041487          215 MLL  217 (218)
Q Consensus       215 ~l~  217 (218)
                      ||+
T Consensus       383 ~L~  385 (446)
T 4ejn_A          383 LLK  385 (446)
T ss_dssp             HTC
T ss_pred             Hcc
Confidence            553

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=4.9e-26  Score=189.55  Aligned_cols=159  Identities=30%  Similarity=0.611  Sum_probs=121.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------  111 (218)
                      ....+|++.+.||+|+||.||+|.+..+++.||+|.+.....      ...+|+.+++.++||||+++++++..      
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT------SCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc------hHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            345789999999999999999999999999999999864321      12379999999999999999999843      


Q ss_pred             --------------------------------CCEEEEEEecCCCChHHHhhhc----ccC-------------------
Q 041487          112 --------------------------------GRYVYLVFEYLDLDLGSFIRKH----TIT-------------------  136 (218)
Q Consensus       112 --------------------------------~~~~~lv~E~~~~~L~~~~~~~----~~~-------------------  136 (218)
                                                      ...+++||||++++|.+++...    ...                   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L  157 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI  157 (383)
T ss_dssp             --------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                            3459999999998877766531    100                   


Q ss_pred             --------Cccccc------------cccCC-----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh
Q 041487          137 --------SIRPHI------------KEVGS-----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS  179 (218)
Q Consensus       137 --------~~~~~~------------~~~g~-----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t  179 (218)
                              +++|.+            .++|.                 .|+|||.+.....++.++||||+||++|+|++
T Consensus       158 H~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  237 (383)
T 3eb0_A          158 HSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELIL  237 (383)
T ss_dssp             HTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             HHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHh
Confidence                    333322            22222                 29999976666668999999999999999999


Q ss_pred             CCCCCCCC-CcchHHHHHHHhccc
Q 041487          180 GKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       180 g~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                      |+.||.+. ..+.+..+++.++.+
T Consensus       238 g~~pf~~~~~~~~~~~i~~~~g~p  261 (383)
T 3eb0_A          238 GKPLFSGETSIDQLVRIIQIMGTP  261 (383)
T ss_dssp             SSCSSCCSSHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCChHHHHHHHHHHhCCC
Confidence            99999987 556666776666554

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.94  E-value=7.1e-26  Score=189.02  Aligned_cols=156  Identities=24%  Similarity=0.389  Sum_probs=124.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..+.|++.+.||+|+||.||+|.++.+++.+|+|++....  ......+.+|+.+++.++||||+++++++.....+++|
T Consensus        49 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  126 (387)
T 1kob_A           49 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  126 (387)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc--hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence            3578999999999999999999999999999999987432  22345788999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Ccccc-------------ccccCC---------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPH-------------IKEVGS---------  147 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-------------~~~~g~---------  147 (218)
                      |||+++ +|.+++......                            +++|.             +.++|.         
T Consensus       127 ~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~  206 (387)
T 1kob_A          127 LEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI  206 (387)
T ss_dssp             EECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred             EEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc
Confidence            999987 998888654211                            23322             222322         


Q ss_pred             --------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          148 --------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       148 --------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                              .|+|||. ..+..++.++|||||||++|+|++|+.||.+.+.......+.
T Consensus       207 ~~~~~gt~~y~aPE~-~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~  263 (387)
T 1kob_A          207 VKVTTATAEFAAPEI-VDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVK  263 (387)
T ss_dssp             EEEECSSGGGCCHHH-HTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHH
T ss_pred             eeeeccCCCccCchh-ccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence                    2999995 455668999999999999999999999998875444433333

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.94  E-value=2e-25  Score=178.03  Aligned_cols=155  Identities=26%  Similarity=0.428  Sum_probs=124.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.++......    ...+.+.+|+.+++.++||||+++++++.....
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   82 (283)
T 3bhy_A            3 VEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTD   82 (283)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCe
Confidence            3567999999999999999999999999999999998654322    246789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccc---------------cccccC-----
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRP---------------HIKEVG-----  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~---------------~~~~~g-----  146 (218)
                      .++||||+++ +|.+++......                           +++|               .+.++|     
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~  162 (283)
T 3bhy_A           83 VVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI  162 (283)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceec
Confidence            9999999975 999988653221                           2222               222222     


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                                  ..|+|||. ..+..++.++||||||+++|+|++|+.||.+........
T Consensus       163 ~~~~~~~~~~~~~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~  221 (283)
T 3bhy_A          163 EAGNEFKNIFGTPEFVAPEI-VNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLT  221 (283)
T ss_dssp             C--------CCCGGGCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH
T ss_pred             cCCCcccccCCCcCccCcce-ecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHH
Confidence                        23999995 455668999999999999999999999998875444333

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.94  E-value=5.4e-26  Score=188.03  Aligned_cols=163  Identities=28%  Similarity=0.517  Sum_probs=128.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----CE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----RY  114 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~  114 (218)
                      .++|++.+.||+|+||.||+|.+..++..||+|.+... ......+.+.+|+.++++++||||+++++++...     ..
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF-EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD  104 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT-TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc-cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence            46899999999999999999999999999999998642 2233457788999999999999999999998654     46


Q ss_pred             EEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------ccc------------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEV------------  145 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~------------  145 (218)
                      .++|||+++++|.+++......                          +++|.+           .++            
T Consensus       105 ~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~  184 (364)
T 3qyz_A          105 VYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH  184 (364)
T ss_dssp             EEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCB
T ss_pred             EEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCc
Confidence            9999999999998887654322                          333322           122            


Q ss_pred             --------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccC
Q 041487          146 --------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALT  203 (218)
Q Consensus       146 --------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~  203 (218)
                              | ..|+|||.+.....++.++|||||||++|+|++|+.||.+. ..+.+..+....+.++
T Consensus       185 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~  252 (364)
T 3qyz_A          185 TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS  252 (364)
T ss_dssp             CCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCC
T ss_pred             cccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCC
Confidence                    2 22899997777777899999999999999999999999887 4555556555555443

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.94  E-value=7.5e-26  Score=193.78  Aligned_cols=159  Identities=30%  Similarity=0.445  Sum_probs=128.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|++.+.... ....+.+.+|+.++++++||||+++++++.....++
T Consensus        23 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  102 (484)
T 3nyv_A           23 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFY  102 (484)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             cccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            4567899999999999999999999999999999999765433 455788999999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc--------------cccC--------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI--------------KEVG--------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~--------------~~~g--------  146 (218)
                      +||||+.+ +|.+++......                           +++|.+              .++|        
T Consensus       103 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  182 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS  182 (484)
T ss_dssp             EEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCC
T ss_pred             EEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccc
Confidence            99999986 888877554321                           333322              2222        


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                               ..|+|||.+. + .++.++|||||||++|+|++|++||.+.+...+...+..
T Consensus       183 ~~~~~~~gt~~y~aPE~~~-~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~  241 (484)
T 3nyv_A          183 KKMKDKIGTAYYIAPEVLH-G-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEK  241 (484)
T ss_dssp             CSHHHHTTGGGTCCHHHHH-T-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             cccccCCCCccccCceeec-C-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHc
Confidence                     2299999654 3 489999999999999999999999998765555554443

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.94  E-value=2e-25  Score=181.72  Aligned_cols=153  Identities=24%  Similarity=0.459  Sum_probs=121.5

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      .|...+.||+|+||.||+|.++.+++.||||++...  .....+.+.+|+.++++++||||+++++++......++||||
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  123 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLR--KQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEF  123 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT--TCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEecc--chhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEec
Confidence            478888999999999999999889999999998743  334467789999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC--------------------------Cccccc-----------cccC-----------------
Q 041487          122 LDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEVG-----------------  146 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g-----------------  146 (218)
                      +++ +|.+++......                          +++|.+           .++|                 
T Consensus       124 ~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  203 (321)
T 2c30_A          124 LQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVG  203 (321)
T ss_dssp             CCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCS
T ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccC
Confidence            987 888877643221                          222221           2222                 


Q ss_pred             -CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 -SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                       ..|+|||.+ .+..++.++|||||||++|+|++|+.||...........+.
T Consensus       204 t~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~  254 (321)
T 2c30_A          204 TPYWMAPEVI-SRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLR  254 (321)
T ss_dssp             CGGGCCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH
T ss_pred             CccccCHhhh-cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence             239999954 55568999999999999999999999998765444443333

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.94  E-value=5.6e-26  Score=183.60  Aligned_cols=164  Identities=40%  Similarity=0.676  Sum_probs=122.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC---CCCchHHHHHHHHHHhhCC---CCCeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE---PEGVPSYLIAGVSLLKELE---HDNIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~~~~  111 (218)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|.+.....   .......+.+|+.+++.++   ||||+++++++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~   85 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT   85 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence            456889999999999999999999999999999999975432   2233456778888777764   9999999999976


Q ss_pred             CC-----EEEEEEecCCCChHHHhhhcccC-----------------------------Cccccc-----------cccC
Q 041487          112 GR-----YVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG  146 (218)
Q Consensus       112 ~~-----~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g  146 (218)
                      ..     ..+++||+++++|.+++......                             +++|.+           .++|
T Consensus        86 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg  165 (308)
T 3g33_A           86 SRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFG  165 (308)
T ss_dssp             CCSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCS
T ss_pred             cCCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCc
Confidence            54     68999999999999988765321                             333322           2222


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhccc
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFTAL  202 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~~~  202 (218)
                                       ..|+|||.+. +..++.++|||||||++|+|++|+.||.+.+ .+.+..+....+.+
T Consensus       166 ~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~  238 (308)
T 3g33_A          166 LARIYSYQMALTPVVVTLWYRAPEVLL-QSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP  238 (308)
T ss_dssp             CTTTSTTCCCSGGGGCCCSSCCHHHHH-TSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             cccccCCCcccCCccccccccCchHHc-CCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence                             2399999654 4558999999999999999999999998873 44445555544433

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=188.59  Aligned_cols=173  Identities=25%  Similarity=0.375  Sum_probs=131.0

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCc---EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~---~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      ...+..++|++.+.||+|+||.||+|.+..++.   .||+|.++.. ......+.+.+|+.+++.++||||+++++++..
T Consensus        43 ~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  121 (325)
T 3kul_A           43 TREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG-YTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR  121 (325)
T ss_dssp             CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG
T ss_pred             ccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            345678899999999999999999999875544   5999998743 233445678999999999999999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccCC----
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS----  147 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~----  147 (218)
                      ....++||||+++ +|.+++......                            +++|.+           .+||.    
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          122 GRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             GGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             CCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence            9999999999977 999988644211                            333322           22221    


Q ss_pred             -----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchh
Q 041487          148 -----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       148 -----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                       .|+|||.+ .+..++.++|||||||++|+|++ |+.||.......+...+.....++.+...|
T Consensus       202 ~~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (325)
T 3kul_A          202 EDDPDAAYTTTGGKIPIRWTAPEAI-AFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCP  280 (325)
T ss_dssp             C----CCEECC---CCGGGSCHHHH-HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCC
T ss_pred             ccCccceeeccCCCCcccccCHhHh-cCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcC
Confidence                             39999955 44558999999999999999999 999998876555555544433333333333

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.94  E-value=2.8e-26  Score=190.35  Aligned_cols=162  Identities=31%  Similarity=0.543  Sum_probs=126.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE---
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV---  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~---  115 (218)
                      ..++|.+.+.||+|+||.||+|.++.+++.||+|.+..........+.+.+|+.+++.++||||+++++++......   
T Consensus        40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            35789999999999999999999999999999999976544445567889999999999999999999999866654   


Q ss_pred             ---EEEEecCCCChHHHhhhcccC-------------------------Cccccc-----------cccC----------
Q 041487          116 ---YLVFEYLDLDLGSFIRKHTIT-------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       116 ---~lv~E~~~~~L~~~~~~~~~~-------------------------~~~~~~-----------~~~g----------  146 (218)
                         ++||||+.++|.+++......                         +++|.+           .++|          
T Consensus       120 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~  199 (371)
T 4exu_A          120 YDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMT  199 (371)
T ss_dssp             CCCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC--------
T ss_pred             eeEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccccCcC
Confidence               999999998887765432111                         333332           2232          


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhc
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFT  200 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~  200 (218)
                           ..|+|||.+.....++.++|||||||++|+|++|+.||.+.+ .+.+..+.+..+
T Consensus       200 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~  259 (371)
T 4exu_A          200 GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTG  259 (371)
T ss_dssp             CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             CcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC
Confidence                 239999976665779999999999999999999999998873 344444444333

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.94  E-value=7.2e-26  Score=183.25  Aligned_cols=161  Identities=19%  Similarity=0.327  Sum_probs=121.9

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ......++|++.+.||+|+||.||+|.+..+++.||+|++...... ....+.+.+|+.+++.++||||+++++++...+
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~  107 (309)
T 2h34_A           28 REGTQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG  107 (309)
T ss_dssp             ------CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT
T ss_pred             CCCcEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC
Confidence            3445578999999999999999999999989999999998754322 233578899999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC--------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g--------  146 (218)
                      ..+++|||+++ +|.+++......                           ++++.+           .++|        
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  187 (309)
T 2h34_A          108 QLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDE  187 (309)
T ss_dssp             EEEEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred             eEEEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence            99999999987 999988764321                           222221           2222        


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                                 ..|+|||.+ .+..++.++||||||+++|+|++|+.||...+...+...+
T Consensus       188 ~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  247 (309)
T 2h34_A          188 KLTQLGNTVGTLYYMAPERF-SESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHI  247 (309)
T ss_dssp             ---------CCGGGCCGGGT-CC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHH
T ss_pred             ccccccccCCCcCccCHHHH-cCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHh
Confidence                       239999954 4556899999999999999999999999887554444433

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.94  E-value=3.3e-26  Score=189.97  Aligned_cols=164  Identities=24%  Similarity=0.433  Sum_probs=127.9

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEc-------cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeee
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNL-------ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDV  108 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~-------~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~  108 (218)
                      .+..++|++.+.||+|+||.||+|.+.       ..+..||+|+++.. ......+.+.+|+.+++.+ +||||++++++
T Consensus        77 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~  155 (370)
T 2psq_A           77 EFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLGA  155 (370)
T ss_dssp             BCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT-CBHHHHHHHHHHHHHHHHSCCCTTBCCEEEE
T ss_pred             cccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC-cCHHHHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            456789999999999999999999874       24567999998743 2333456789999999999 89999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhccc-----------------C--------------------------Cccccc--
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTI-----------------T--------------------------SIRPHI--  142 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~-----------------~--------------------------~~~~~~--  142 (218)
                      +...+.+|+||||+++ +|.+++.....                 .                          ++++.+  
T Consensus       156 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl  235 (370)
T 2psq_A          156 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVL  235 (370)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             EccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEE
Confidence            9999999999999987 99999876431                 0                          233322  


Q ss_pred             ---------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchH
Q 041487          143 ---------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHL  192 (218)
Q Consensus       143 ---------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~  192 (218)
                               .+||                    ..|+|||.+. +..++.++|||||||++|+|++ |+.||.+.....+
T Consensus       236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~  314 (370)
T 2psq_A          236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF-DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEEL  314 (370)
T ss_dssp             ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHH-TCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH
T ss_pred             ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhc-CCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH
Confidence                     2222                    1399999654 5568999999999999999999 9999998876666


Q ss_pred             HHHHHHhccc
Q 041487          193 SLIVRYFTAL  202 (218)
Q Consensus       193 ~~~~~~~~~~  202 (218)
                      ...+.....+
T Consensus       315 ~~~~~~~~~~  324 (370)
T 2psq_A          315 FKLLKEGHRM  324 (370)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHhcCCCC
Confidence            6655543333

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.94  E-value=7.4e-26  Score=180.33  Aligned_cols=180  Identities=24%  Similarity=0.356  Sum_probs=135.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++.+.||+|+||.||+|.+..++..||+|++.... ........+.+|+.+++.++||||+++++++......
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   84 (279)
T 3fdn_A            5 QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV   84 (279)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             eeecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEE
Confidence            456789999999999999999999999999999999986533 1223457789999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC----------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g----------  146 (218)
                      ++||||+++ +|.+++......                           +++|.+           .++|          
T Consensus        85 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~  164 (279)
T 3fdn_A           85 YLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR  164 (279)
T ss_dssp             EEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC-----
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCcccc
Confidence            999999987 888887653221                           333322           2222          


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc---ccchhhhhhhccc
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN---YLVLPCFLSIMLL  217 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~  217 (218)
                            ..|+|||. ..+..++.++||||||+++|+|++|+.||...+.......+.......+   +..+-+++..||+
T Consensus       165 ~~~~~~~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  243 (279)
T 3fdn_A          165 TDLCGTLDYLPPEM-IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLK  243 (279)
T ss_dssp             ---CCCCTTCCHHH-HTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCC
T ss_pred             cccCCCCCccCHhH-hccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhc
Confidence                  23899995 4566689999999999999999999999998765555554444332222   2233455555553

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.94  E-value=6e-26  Score=179.97  Aligned_cols=157  Identities=25%  Similarity=0.373  Sum_probs=124.8

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      .+..++|++.+.||+|+||.||+|.+. ++..||+|.+....   ...+.+.+|+.++++++||||+++++++......+
T Consensus         6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   81 (269)
T 4hcu_A            6 VIDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGA---MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC   81 (269)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTS---BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             EeChhhceeeheecCCCccEEEEEEec-CCCeEEEEEecccc---cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceE
Confidence            466789999999999999999999975 57789999987432   23467899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +||||+++ +|.+++......                            +++|.+           .++|          
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  161 (269)
T 4hcu_A           82 LVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  161 (269)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred             EEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccccc
Confidence            99999987 899988654321                            333322           2222          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                               ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...........+..
T Consensus       162 ~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~  222 (269)
T 4hcu_A          162 TSSTGTKFPVKWASPEVF-SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIST  222 (269)
T ss_dssp             HSTTSTTCCGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHT
T ss_pred             ccccCcccccccCCHHHh-cCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhc
Confidence                     139999954 45558999999999999999999 9999998766555554443

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=3.5e-26  Score=187.95  Aligned_cols=164  Identities=30%  Similarity=0.589  Sum_probs=121.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC---CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP---EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.++.....   ....+.+.+|+.+++.++||||+++++++......
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            457899999999999999999999889999999999754322   22345788999999999999999999999999999


Q ss_pred             EEEEecCCCChHHHhhhcccC----------------------------Cccccc-----------ccc-----------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEV-----------  145 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~-----------  145 (218)
                      ++||||++++|.+++......                            ++++.+           .++           
T Consensus        88 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  167 (346)
T 1ua2_A           88 SLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR  167 (346)
T ss_dssp             EEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC
T ss_pred             EEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcc
Confidence            999999999888887654321                            233222           122           


Q ss_pred             -------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          146 -------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       146 -------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                             +..|+|||.+.....++.++|||||||++|+|++|.+||.+. ..+.+..+....+.+
T Consensus       168 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~  232 (346)
T 1ua2_A          168 AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTP  232 (346)
T ss_dssp             CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCC
T ss_pred             cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCC
Confidence                   123999997666666899999999999999999999999887 344455555554443

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.94  E-value=1.9e-25  Score=189.87  Aligned_cols=156  Identities=28%  Similarity=0.484  Sum_probs=124.0

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC-E
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR-Y  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~  114 (218)
                      ..+..++|++.+.||+|+||.||+|..  .+..||||.++..    ...+.+.+|+.++++++||||+++++++.... .
T Consensus       188 ~~i~~~~~~~~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  261 (450)
T 1k9a_A          188 WALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG  261 (450)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEESSC----TTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSC
T ss_pred             cccChHHeEEEeeecCcCCeeEEEEEe--cCCeEEEEEeCCc----hHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCc
Confidence            346778999999999999999999987  4789999998743    24578999999999999999999999987654 7


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC-----------------------------Ccccc-----------ccccCC------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEVGS------  147 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~g~------  147 (218)
                      +++||||+++ +|.+++......                             ++++.           +.++|.      
T Consensus       262 ~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  341 (450)
T 1k9a_A          262 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS  341 (450)
T ss_dssp             EEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             eEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccc
Confidence            9999999987 999998765321                             23332           233332      


Q ss_pred             ---------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          148 ---------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       148 ---------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                               .|+|||.+ .+..++.++|||||||++|+|+| |+.||.......+...+..
T Consensus       342 ~~~~~~~~~~y~aPE~~-~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~  401 (450)
T 1k9a_A          342 TQDTGKLPVKWTAPEAL-REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK  401 (450)
T ss_dssp             -----CCCTTTSCHHHH-HSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHT
T ss_pred             cccCCCCCcceeCHHHh-cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence                     39999955 45568999999999999999999 9999998755555554443

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.94  E-value=6.4e-26  Score=181.28  Aligned_cols=166  Identities=22%  Similarity=0.380  Sum_probs=133.0

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...+..++|++.+.||+|+||.||+|.++.++..||+|.+..   .....+.+.+|+.+++.++||||+++++++.....
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   83 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   83 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECS---CSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCc---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            445678899999999999999999999999999999999863   33456789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC-------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g-------  146 (218)
                      .++||||+++ +|.+++......                             +++|.+           .++|       
T Consensus        84 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  163 (288)
T 3kfa_A           84 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  163 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCS
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccC
Confidence            9999999996 999998753321                             333322           2222       


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCc
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTN  204 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~  204 (218)
                                  ..|+|||.+ .+..++.++||||||+++|+|++ |..||...+...+...+.....+..
T Consensus       164 ~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~  233 (288)
T 3kfa_A          164 DTYTAHAGAKFPIKWTAPESL-AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER  233 (288)
T ss_dssp             SSSEEETTEEECGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCC
T ss_pred             CccccccCCccccCcCChhhh-ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCC
Confidence                        139999955 44558999999999999999999 9999998876666666554433333

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.94  E-value=9.6e-26  Score=195.25  Aligned_cols=149  Identities=23%  Similarity=0.317  Sum_probs=122.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|.+.+.||+|+||.||+|+++.+++.||+|++.+.. ......+.+.+|+.+++.++||||+++++++.....+|
T Consensus       182 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~  261 (543)
T 3c4z_A          182 MGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLC  261 (543)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEE
Confidence            45688999999999999999999999999999999997543 22345678899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhccc-----C--------------------------Cccccc-----------cc---------
Q 041487          117 LVFEYLDL-DLGSFIRKHTI-----T--------------------------SIRPHI-----------KE---------  144 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~-----~--------------------------~~~~~~-----------~~---------  144 (218)
                      +||||+++ +|.+++.....     .                          +++|.+           .+         
T Consensus       262 lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          262 LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA  341 (543)
T ss_dssp             EEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence            99999987 89888765321     0                          233321           11         


Q ss_pred             --------cCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          145 --------VGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       145 --------~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              .|+ .|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       342 ~~~~~~~~~GT~~Y~APE~l-~~~~~~~~~DiwSlGvilyelltG~~PF~~~  392 (543)
T 3c4z_A          342 GQTKTKGYAGTPGFMAPELL-LGEEYDFSVDYFALGVTLYEMIAARGPFRAR  392 (543)
T ss_dssp             TCCCBCCCCSCTTTSCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred             CCcccccccCCccccChhhh-cCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence                    232 39999954 4566899999999999999999999999875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.93  E-value=4.8e-25  Score=177.58  Aligned_cols=157  Identities=22%  Similarity=0.423  Sum_probs=125.1

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..+.|++.+.||+|+||.||+|.+..+++.||+|++.... .....+.+.+|+.+++.++||||+++++++......++|
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   98 (303)
T 3a7i_A           20 PEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE-AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII   98 (303)
T ss_dssp             GGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTT-CSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccc-cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence            3466999999999999999999999999999999997543 234567899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC--------------------------Cccccc-----------cccC--------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEVG--------------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g--------------  146 (218)
                      |||+++ +|.+++......                          ++++.+           .++|              
T Consensus        99 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  178 (303)
T 3a7i_A           99 MEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNT  178 (303)
T ss_dssp             EECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCC
T ss_pred             EEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCccccccCc
Confidence            999987 888887653221                          222221           1222              


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                          ..|+|||.+ .+..++.++||||||+++|+|++|+.||...........+.
T Consensus       179 ~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~  232 (303)
T 3a7i_A          179 FVGTPFWMAPEVI-KQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIP  232 (303)
T ss_dssp             CCSCGGGCCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH
T ss_pred             cCCCcCccCHHHH-hcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhh
Confidence                238999954 45568899999999999999999999998775544444433

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.93  E-value=3.8e-25  Score=175.92  Aligned_cols=155  Identities=23%  Similarity=0.391  Sum_probs=124.1

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.+..++..+|+|.+.....  ...+.+.+|+.+++.++||||+++++++......++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV--EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM   85 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence            5679999999999999999999999999999999875432  34678999999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc--------------cccC-----------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI--------------KEVG-----------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~--------------~~~g-----------  146 (218)
                      ||+++ +|.+++......                           +++|.+              .++|           
T Consensus        86 e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~  165 (277)
T 3f3z_A           86 ELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM  165 (277)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCB
T ss_pred             eccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccch
Confidence            99977 888877654321                           222221              2222           


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                            ..|+|||.+ .+. ++.++||||||+++|+|++|+.||...+.......+..
T Consensus       166 ~~~~~t~~y~aPE~~-~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~  221 (277)
T 3f3z_A          166 RTKVGTPYYVSPQVL-EGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIRE  221 (277)
T ss_dssp             CCCCSCTTTCCHHHH-TTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             hccCCCCCccChHHh-ccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence                  239999954 343 89999999999999999999999998755554444443

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.93  E-value=2e-25  Score=183.79  Aligned_cols=148  Identities=26%  Similarity=0.403  Sum_probs=114.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ...+.|++.+.||+|+||.||+|.++.+++.||+|+++...    ..+.+.+|+.++++++||||+++++++......++
T Consensus        50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  125 (349)
T 2w4o_A           50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL  125 (349)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence            34577999999999999999999999999999999997532    23567889999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Cccccc--------------cccC---------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI--------------KEVG---------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~--------------~~~g---------  146 (218)
                      ||||+++ +|.+++......                           +++|.+              .++|         
T Consensus       126 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~  205 (349)
T 2w4o_A          126 VLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV  205 (349)
T ss_dssp             EECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC---------
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc
Confidence            9999986 998887654321                           233322              2222         


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                              ..|+|||. ..+..++.++|||||||++|+|++|+.||......
T Consensus       206 ~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  256 (349)
T 2w4o_A          206 LMKTVCGTPGYCAPEI-LRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD  256 (349)
T ss_dssp             -------CGGGSCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH
T ss_pred             ccccccCCCCccCHHH-hcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc
Confidence                    23999995 45556899999999999999999999999876433

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.93  E-value=2.1e-25  Score=183.95  Aligned_cols=161  Identities=24%  Similarity=0.466  Sum_probs=126.0

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-----CCCeeeeeeeEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-----HDNIVRLLDVLT  110 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-----h~~iv~~~~~~~  110 (218)
                      ..+..++|++.+.||+|+||.||+|.+..+++.||+|+++.   .....+.+..|+.+++.+.     ||||+++++++.
T Consensus        30 g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~  106 (360)
T 3llt_A           30 GMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN---IKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFM  106 (360)
T ss_dssp             TCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEE
T ss_pred             ceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc---chhhhhhhHHHHHHHHHhcccCCCCCCeecccceee
Confidence            34567889999999999999999999999999999999863   2233466778999999986     999999999999


Q ss_pred             eCCEEEEEEecCCCChHHHhhhcccC-----------------------------Cccccc-------------------
Q 041487          111 TGRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI-------------------  142 (218)
Q Consensus       111 ~~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~-------------------  142 (218)
                      ..+..++|||++.++|.+++......                             +++|.+                   
T Consensus       107 ~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~  186 (360)
T 3llt_A          107 YYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVT  186 (360)
T ss_dssp             ETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTT
T ss_pred             ECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhccc
Confidence            99999999999977999998765421                             333322                   


Q ss_pred             -----------------cccCC---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          143 -----------------KEVGS---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       143 -----------------~~~g~---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                                       .++|.               .|+|||.+ .+..++.++|||||||++|+|++|+.||...+..
T Consensus       187 ~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  265 (360)
T 3llt_A          187 DGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVI-LNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHM  265 (360)
T ss_dssp             TCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHH-TTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHH-cCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHH
Confidence                             22222               39999955 4556899999999999999999999999887443


Q ss_pred             -hHHHHHHHhc
Q 041487          191 -HLSLIVRYFT  200 (218)
Q Consensus       191 -~~~~~~~~~~  200 (218)
                       .+..+....+
T Consensus       266 ~~~~~~~~~~~  276 (360)
T 3llt_A          266 EHLAMMESIIQ  276 (360)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence             3444444333

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.93  E-value=6e-26  Score=184.46  Aligned_cols=164  Identities=20%  Similarity=0.335  Sum_probs=117.4

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCc---EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~---~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ..+..++|++.+.||+|+||.||+|.++.++.   .||+|.++.........+.+.+|+.++++++||||+++++++...
T Consensus        18 ~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   97 (323)
T 3qup_A           18 VLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRS   97 (323)
T ss_dssp             TBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC
T ss_pred             cccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecc
Confidence            34567889999999999999999999876664   899999986555556678899999999999999999999999876


Q ss_pred             CEE------EEEEecCCC-ChHHHhhhccc-------C--------------------------Cccccc----------
Q 041487          113 RYV------YLVFEYLDL-DLGSFIRKHTI-------T--------------------------SIRPHI----------  142 (218)
Q Consensus       113 ~~~------~lv~E~~~~-~L~~~~~~~~~-------~--------------------------~~~~~~----------  142 (218)
                      ...      +++|||+++ +|.+++.....       .                          +++|.+          
T Consensus        98 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~k  177 (323)
T 3qup_A           98 RAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVC  177 (323)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEE
T ss_pred             ccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEE
Confidence            554      999999988 99888854321       0                          333322          


Q ss_pred             -cccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhc
Q 041487          143 -KEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFT  200 (218)
Q Consensus       143 -~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~  200 (218)
                       .++|.                    .|+|||.+ .+..++.++|||||||++|+|++ |+.||.+.+...+...+....
T Consensus       178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~  256 (323)
T 3qup_A          178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALESL-ADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGN  256 (323)
T ss_dssp             ECCCCC-----------------CCGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC
T ss_pred             EeeccccccccccccccccccccCcccccCchhh-cCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCC
Confidence             22321                    39999954 45558999999999999999999 999999886666555544433

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.93  E-value=3.6e-26  Score=196.45  Aligned_cols=161  Identities=23%  Similarity=0.395  Sum_probs=130.0

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...+...+|++.+.||+|+||.||+|.++.++..||+|.++..   ....+.+.+|+.++++++||||+++++++.....
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~  290 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP  290 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS---SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc---ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            3456778899999999999999999999988999999998643   2346789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC-------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g-------  146 (218)
                      +++||||+++ +|.+++......                             ++++.+           .+||       
T Consensus       291 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  370 (495)
T 1opk_A          291 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG  370 (495)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTT
T ss_pred             EEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccC
Confidence            9999999986 999998753221                             233321           2222       


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHh
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYF  199 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~  199 (218)
                                  ..|+|||.+ .+..++.++|||||||++|+|+| |+.||.+.+...+...+...
T Consensus       371 ~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~  435 (495)
T 1opk_A          371 DTYTAHAGAKFPIKWTAPESL-AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKD  435 (495)
T ss_dssp             CCEECCTTCCCCGGGCCHHHH-HHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTT
T ss_pred             CceeecCCCcCCcceeCHhHH-hcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence                        239999965 44558999999999999999999 99999988766666555543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.93  E-value=1.5e-25  Score=179.30  Aligned_cols=158  Identities=24%  Similarity=0.391  Sum_probs=126.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      -..++|.+.+.||+|+||.||+|.++.++..+|+|.+.... .....+.+.+|+.+++.++||||+++++++......++
T Consensus        19 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   97 (285)
T 3is5_A           19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR-SQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYI   97 (285)
T ss_dssp             CHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-CCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ChhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccc-cchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEE
Confidence            34578999999999999999999999999999999997653 33446789999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcc-----cC--------------------------Ccccc--------------ccccCC----
Q 041487          118 VFEYLDL-DLGSFIRKHT-----IT--------------------------SIRPH--------------IKEVGS----  147 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~-----~~--------------------------~~~~~--------------~~~~g~----  147 (218)
                      ||||+++ +|.+++....     ..                          +++|.              +.++|.    
T Consensus        98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~  177 (285)
T 3is5_A           98 VMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF  177 (285)
T ss_dssp             EECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred             EEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence            9999987 8888774321     10                          22222              222322    


Q ss_pred             -------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          148 -------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       148 -------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                                   .|+|||.+ . +.++.++|||||||++|+|++|+.||.+............
T Consensus       178 ~~~~~~~~~~~t~~y~aPE~~-~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~  239 (285)
T 3is5_A          178 KSDEHSTNAAGTALYMAPEVF-K-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATY  239 (285)
T ss_dssp             ---------CTTGGGCCHHHH-T-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCcccCcCcccccCcCChHHh-c-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhcc
Confidence                         29999954 3 3478999999999999999999999998766665555443

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.93  E-value=8.1e-26  Score=179.91  Aligned_cols=178  Identities=29%  Similarity=0.427  Sum_probs=132.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCCEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGRYVY  116 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~  116 (218)
                      ..++|++.+.||+|+||.||+|.++.+++.||+|.+..........+.+.+|+.++++++||||+++++++.  .....+
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   83 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   83 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred             chhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence            357899999999999999999999999999999999865555555678999999999999999999999875  467899


Q ss_pred             EEEecCCC-ChHHHhhhccc------------------------------------CCccccc-----------ccc---
Q 041487          117 LVFEYLDL-DLGSFIRKHTI------------------------------------TSIRPHI-----------KEV---  145 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~------------------------------------~~~~~~~-----------~~~---  145 (218)
                      +||||+++ +|.+++.....                                    .++++.+           .++   
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~  163 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  163 (279)
T ss_dssp             EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHH
T ss_pred             EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchh
Confidence            99999987 99888765321                                    0222221           122   


Q ss_pred             ---------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc----cc
Q 041487          146 ---------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN----YL  206 (218)
Q Consensus       146 ---------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~----~~  206 (218)
                                     ...|+|||.+. +..++.++||||||+++|+|++|+.||...+...+...+.....+..    +.
T Consensus       164 ~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~  242 (279)
T 2w5a_A          164 RILNHDTSFAKTFVGTPYYMSPEQMN-RMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSD  242 (279)
T ss_dssp             HHC---CHHHHHHHSCCTTCCHHHHH-CC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCCTTSCH
T ss_pred             eeeccccccccccCCCccccChHHhc-cCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccCCcccCH
Confidence                           12399999554 45589999999999999999999999998765555554444332222    23


Q ss_pred             chhhhhhhccc
Q 041487          207 VLPCFLSIMLL  217 (218)
Q Consensus       207 ~~~~~~~~~l~  217 (218)
                      .+-+++..||+
T Consensus       243 ~l~~li~~~l~  253 (279)
T 2w5a_A          243 ELNEIITRMLN  253 (279)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHcC
Confidence            34445555543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.93  E-value=4.2e-25  Score=176.75  Aligned_cols=161  Identities=32%  Similarity=0.485  Sum_probs=128.6

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ......++|++.+.||+|+||.||+|.+..+++.||+|++..........+.+.+|+.++++++||||+++++++.....
T Consensus        16 ~~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   95 (287)
T 2wei_A           16 FQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSS   95 (287)
T ss_dssp             HTHHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             HHHHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCe
Confidence            34456788999999999999999999998899999999998665555667889999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccCC-----
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVGS-----  147 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g~-----  147 (218)
                      .+++||++.+ +|.+++......                           ++++.              +.++|.     
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~  175 (287)
T 2wei_A           96 FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ  175 (287)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBC
T ss_pred             EEEEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeec
Confidence            9999999976 888877543221                           22222              223331     


Q ss_pred             ------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          148 ------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       148 ------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                  .|+|||.+ .+. ++.++||||||+++|+|++|+.||.+.+...+...+.
T Consensus       176 ~~~~~~~~~~~~~y~aPE~~-~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~  235 (287)
T 2wei_A          176 QNTKMKDRIGTAYYIAPEVL-RGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVE  235 (287)
T ss_dssp             CCSSCSCHHHHHTTCCHHHH-TTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             CCCccccccCcccccChHHh-cCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence                        28999954 343 8999999999999999999999998875554444433

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.93  E-value=1.9e-25  Score=178.37  Aligned_cols=158  Identities=25%  Similarity=0.432  Sum_probs=125.8

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..+..++|++.+.||+|+||.||+|.+..++..||+|++.... ......+.+.+|+.+++.++||||+++++++...+.
T Consensus         9 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   88 (284)
T 2vgo_A            9 RKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKR   88 (284)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             cchhhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCE
Confidence            3466789999999999999999999999899999999986543 123445788999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC---------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g---------  146 (218)
                      .+++|||+++ +|.+++......                           ++++.+           .++|         
T Consensus        89 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~  168 (284)
T 2vgo_A           89 IYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR  168 (284)
T ss_dssp             EEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred             EEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence            9999999987 998887654321                           222221           2222         


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                             ..|+|||. ..+..++.++||||||+++|+|++|+.||..........
T Consensus       169 ~~~~~~~~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~  222 (284)
T 2vgo_A          169 RRTMCGTLDYLPPEM-IEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHR  222 (284)
T ss_dssp             BCCCCSCGGGCCHHH-HTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH
T ss_pred             cccccCCCCcCCHHH-hccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHH
Confidence                   23999995 445568999999999999999999999998765444433

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.93  E-value=4.8e-25  Score=177.76  Aligned_cols=156  Identities=28%  Similarity=0.411  Sum_probs=122.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|.+.+.||+|+||.||+|.+..+++.||+|.++....  ...+.+.+|+.+++.++||||+++++++......+++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA--FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV   84 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc--cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence            35789999999999999999999999999999999975322  2245788999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccccc--------------cccC----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPHI--------------KEVG----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~--------------~~~g----------  146 (218)
                      |||+++ +|.+++......                           ++++.+              .++|          
T Consensus        85 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~  164 (304)
T 2jam_A           85 MQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIM  164 (304)
T ss_dssp             ECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTT
T ss_pred             EEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCcc
Confidence            999976 998887653321                           222221              2222          


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                            ..|+|||.+ .+..++.++|||||||++|+|++|+.||.......+...+.
T Consensus       165 ~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~  220 (304)
T 2jam_A          165 STACGTPGYVAPEVL-AQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIK  220 (304)
T ss_dssp             HHHHSCCCBCCTTTB-SSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH
T ss_pred             ccccCCCCccChHHh-ccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence                  239999954 45568999999999999999999999998875554444443

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.6e-25  Score=181.82  Aligned_cols=149  Identities=23%  Similarity=0.370  Sum_probs=119.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC--EE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR--YV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~  115 (218)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|+++.... ....+.+.+|+.++++++||||+++++++....  ..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   84 (319)
T 4euu_A            6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHK   84 (319)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCE
T ss_pred             CCCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceE
Confidence            456789999999999999999999999999999999875332 233677889999999999999999999987654  78


Q ss_pred             EEEEecCCC-ChHHHhhhcccC------------------------------Cccccc---------------cccC---
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT------------------------------SIRPHI---------------KEVG---  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~------------------------------~~~~~~---------------~~~g---  146 (218)
                      ++||||+++ +|.+++......                              +++|.+               .++|   
T Consensus        85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~  164 (319)
T 4euu_A           85 VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (319)
T ss_dssp             EEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred             EEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence            999999986 999888754321                              333322               2222   


Q ss_pred             --------------CcccCcccccC-------CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------------SPYKAPESRIR-------SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------------~~y~aPE~~~~-------~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                    ..|+|||.+..       +..++.++|||||||++|+|++|+.||...
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  226 (319)
T 4euu_A          165 ELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF  226 (319)
T ss_dssp             ECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECT
T ss_pred             ecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                          23999996542       456899999999999999999999999754

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.93  E-value=1.1e-25  Score=178.19  Aligned_cols=157  Identities=25%  Similarity=0.358  Sum_probs=123.6

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      .+..++|++.+.||+|+||.||+|.++ ++..||+|.++...   ...+.+.+|+.++++++||||+++++++......+
T Consensus         4 ~l~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   79 (268)
T 3sxs_A            4 ELKREEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGS---MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIY   79 (268)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTT---BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEE
T ss_pred             EechhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCC---CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceE
Confidence            466789999999999999999999764 56789999987433   23467899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +||||+++ +|.+++......                            +++|.+           .++|          
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  159 (268)
T 3sxs_A           80 IVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY  159 (268)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE
T ss_pred             EEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhh
Confidence            99999976 899988664321                            333322           2222          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                               ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...........+..
T Consensus       160 ~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~  220 (268)
T 3sxs_A          160 VSSVGTKFPVKWSAPEVF-HYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQ  220 (268)
T ss_dssp             EECCSCCCCGGGCCHHHH-HHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHT
T ss_pred             hcccCCCcCcccCCHHHH-hccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHc
Confidence                     139999954 45558999999999999999999 9999987755554444443

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.93  E-value=6.6e-26  Score=186.65  Aligned_cols=160  Identities=31%  Similarity=0.552  Sum_probs=123.8

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE-----
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY-----  114 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-----  114 (218)
                      .++|.+.+.||+|+||.||+|.++.+++.||+|.+..........+.+.+|+.+++.++||||+++++++.....     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            578999999999999999999999999999999997554444456788899999999999999999999976543     


Q ss_pred             -EEEEEecCCCChHHHhhhccc-------------------------CCccccc-----------cccC-----------
Q 041487          115 -VYLVFEYLDLDLGSFIRKHTI-------------------------TSIRPHI-----------KEVG-----------  146 (218)
Q Consensus       115 -~~lv~E~~~~~L~~~~~~~~~-------------------------~~~~~~~-----------~~~g-----------  146 (218)
                       .+++|||++++|.+++.....                         .+++|.+           .++|           
T Consensus       103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  182 (353)
T 3coi_A          103 DFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTG  182 (353)
T ss_dssp             CCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-------
T ss_pred             eEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCCCccc
Confidence             599999998877766543211                         0333322           2222           


Q ss_pred             ----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHh
Q 041487          147 ----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYF  199 (218)
Q Consensus       147 ----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~  199 (218)
                          ..|+|||.+.....++.++|||||||++|+|++|+.||.+.+ .+.+..+.+..
T Consensus       183 ~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~  240 (353)
T 3coi_A          183 YVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVT  240 (353)
T ss_dssp             -CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHH
T ss_pred             cccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence                239999976665678999999999999999999999998764 33444444433

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.93  E-value=4.9e-26  Score=182.00  Aligned_cols=151  Identities=22%  Similarity=0.386  Sum_probs=114.6

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ++..++|++.+.||+|+||.||+|.+..+++.||+|.++.........+.+.++...++.++||||+++++++...+..+
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~   82 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW   82 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEE
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEE
Confidence            35678999999999999999999999999999999999754333333444555555688889999999999999999999


Q ss_pred             EEEecCCCChHHHhhhc----c-c---------------------------CCccccc-----------cccC-------
Q 041487          117 LVFEYLDLDLGSFIRKH----T-I---------------------------TSIRPHI-----------KEVG-------  146 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~----~-~---------------------------~~~~~~~-----------~~~g-------  146 (218)
                      +||||++++|.+++...    . .                           .+++|.+           .++|       
T Consensus        83 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  162 (290)
T 3fme_A           83 ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD  162 (290)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred             EEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence            99999998887776431    0 0                           0222222           2222       


Q ss_pred             ----------CcccCcccc---cCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----------SPYKAPESR---IRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----------~~y~aPE~~---~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                ..|+|||.+   .....++.++|||||||++|+|++|+.||...
T Consensus       163 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  216 (290)
T 3fme_A          163 DVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW  216 (290)
T ss_dssp             -------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred             cccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc
Confidence                      239999965   34566889999999999999999999999864

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.93  E-value=1.3e-25  Score=183.95  Aligned_cols=156  Identities=26%  Similarity=0.396  Sum_probs=122.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC---CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN---EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      ..++|++.+.||+|+||.||+|.+..++..||+|++....   ......+.+.+|+.++++++||||+++++++......
T Consensus        24 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~  103 (345)
T 3hko_A           24 LQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYI  103 (345)
T ss_dssp             HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeE
Confidence            3577999999999999999999999999999999997542   2445678899999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcc------------------------------------------------------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHT------------------------------------------------------------  134 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~------------------------------------------------------------  134 (218)
                      ++||||+++ +|.+++....                                                            
T Consensus       104 ~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~  183 (345)
T 3hko_A          104 CLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHY  183 (345)
T ss_dssp             EEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence            999999976 8888774100                                                            


Q ss_pred             -----c--CCccc-------------cccccC----------------------CcccCcccccC-CCCCCCcchHHHHH
Q 041487          135 -----I--TSIRP-------------HIKEVG----------------------SPYKAPESRIR-SSVYSTPHDVWAVG  171 (218)
Q Consensus       135 -----~--~~~~~-------------~~~~~g----------------------~~y~aPE~~~~-~~~~~~~~DiwSlG  171 (218)
                           .  .+++|             .+.++|                      ..|+|||.+.. ...++.++||||||
T Consensus       184 LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG  263 (345)
T 3hko_A          184 LHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAG  263 (345)
T ss_dssp             HHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHH
T ss_pred             HHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHH
Confidence                 0  02222             222232                      12999996654 35689999999999


Q ss_pred             HHHHHHHhCCCCCCCCCcchHHH
Q 041487          172 CIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       172 ~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                      |++|+|++|+.||.+.+......
T Consensus       264 ~il~el~~g~~pf~~~~~~~~~~  286 (345)
T 3hko_A          264 VLLHLLLMGAVPFPGVNDADTIS  286 (345)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCChHHHHH
Confidence            99999999999998874443333

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.93  E-value=4.6e-26  Score=180.23  Aligned_cols=155  Identities=14%  Similarity=0.239  Sum_probs=121.7

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC--C
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG--R  113 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~  113 (218)
                      ..+..++|++.+.||+|+||.||+|.+  .+..+|+|++..........+.+.+|+.+++.++||||+++++++...  .
T Consensus         5 ~~i~~~~y~~~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   82 (271)
T 3kmu_A            5 SGIDFKQLNFLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAP   82 (271)
T ss_dssp             CCCCGGGCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSS
T ss_pred             CCCCHHHhHHHHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCC
Confidence            346678999999999999999999997  588999999986554555567899999999999999999999999876  7


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-------------------------------Cccccc-----------c--c----
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-------------------------------SIRPHI-----------K--E----  144 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------~~~~~~-----------~--~----  144 (218)
                      ..+++|||+++ +|.+++......                               +++|.+           .  +    
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~  162 (271)
T 3kmu_A           83 HPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFS  162 (271)
T ss_dssp             SCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred             CeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceee
Confidence            89999999986 999998765321                               222221           0  0    


Q ss_pred             -------cCCcccCcccccCCCC--CCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          145 -------VGSPYKAPESRIRSSV--YSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       145 -------~g~~y~aPE~~~~~~~--~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                             .+..|+|||.+.....  ++.++|||||||++|+|++|+.||...+....
T Consensus       163 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~  219 (271)
T 3kmu_A          163 FQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI  219 (271)
T ss_dssp             TSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH
T ss_pred             ecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH
Confidence                   1223999996654332  23379999999999999999999987754444

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.93  E-value=7.3e-26  Score=187.62  Aligned_cols=169  Identities=22%  Similarity=0.379  Sum_probs=129.2

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEE-----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLN-----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDV  108 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~  108 (218)
                      ....+..++|++.+.||+|+||.||+|..     ..++..||+|.++.. ........+.+|+.+++.++||||++++++
T Consensus        64 ~~~~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~  142 (367)
T 3l9p_A           64 DLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRCIGV  142 (367)
T ss_dssp             GSCBCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             chhhcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc-cChhhHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            34456678999999999999999999994     456789999998632 233345678899999999999999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhcccC----------------------------------Cccccc-----------
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPHI-----------  142 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~~-----------  142 (218)
                      +......++||||+++ +|.+++......                                  +++|.+           
T Consensus       143 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~  222 (367)
T 3l9p_A          143 SLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRV  222 (367)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCC
T ss_pred             EecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCce
Confidence            9999999999999977 999988764310                                  233322           


Q ss_pred             ---cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          143 ---KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       143 ---~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                         .+||                    ..|+|||.+. +..++.++|||||||++|+|++ |..||.......+...+..
T Consensus       223 ~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~  301 (367)
T 3l9p_A          223 AKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFM-EGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTS  301 (367)
T ss_dssp             EEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHT
T ss_pred             EEECCCccccccccccccccCCCcCCcccEECHHHhc-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence               1221                    2399999554 4558999999999999999998 9999998866666665554


Q ss_pred             hcccCc
Q 041487          199 FTALTN  204 (218)
Q Consensus       199 ~~~~~~  204 (218)
                      ...+..
T Consensus       302 ~~~~~~  307 (367)
T 3l9p_A          302 GGRMDP  307 (367)
T ss_dssp             TCCCCC
T ss_pred             CCCCCC
Confidence            443333

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.93  E-value=1.6e-25  Score=178.98  Aligned_cols=179  Identities=19%  Similarity=0.338  Sum_probs=132.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCC-------cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETG-------KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~-------~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      .+..++|++.+.||+|+||.||+|.++.++       ..||+|.+...  .....+.+.+|+.+++.++||||+++++++
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   81 (289)
T 4fvq_A            4 KIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA--HRNYSESFFEAASMMSKLSHKHLVLNYGVC   81 (289)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG--GGGGHHHHHHHHHHHHTSCCTTBCCEEEEE
T ss_pred             EechhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc--cHHHHHHHHHHHHHHHhCCCCCEeEEEEEE
Confidence            466789999999999999999999988776       47999998643  334467899999999999999999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccc-------------------c
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRP-------------------H  141 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~-------------------~  141 (218)
                      ...+..++||||+++ +|.+++......                            +++|                   .
T Consensus        82 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~k  161 (289)
T 4fvq_A           82 VCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIK  161 (289)
T ss_dssp             CCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEE
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceee
Confidence            999999999999986 999998765421                            2222                   2


Q ss_pred             ccccCC--------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhC-CCCCCCCCcchHHHHHHHhccc--Cc
Q 041487          142 IKEVGS--------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG-KPLFPCGKKDHLSLIVRYFTAL--TN  204 (218)
Q Consensus       142 ~~~~g~--------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg-~~Pf~~~~~~~~~~~~~~~~~~--~~  204 (218)
                      +.++|.              .|+|||.+.....++.++|||||||++|+|++| .+||...+..............  ..
T Consensus       162 l~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (289)
T 4fvq_A          162 LSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPK  241 (289)
T ss_dssp             ECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCS
T ss_pred             eccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCCCC
Confidence            233433              399999766546689999999999999999995 5666655444444333322211  22


Q ss_pred             ccchhhhhhhccc
Q 041487          205 YLVLPCFLSIMLL  217 (218)
Q Consensus       205 ~~~~~~~~~~~l~  217 (218)
                      +..+-+++..||+
T Consensus       242 ~~~l~~li~~~l~  254 (289)
T 4fvq_A          242 AAELANLINNCMD  254 (289)
T ss_dssp             SCTTHHHHHHHSC
T ss_pred             CHHHHHHHHHHcC
Confidence            3344455555553

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.93  E-value=1.7e-25  Score=188.66  Aligned_cols=158  Identities=30%  Similarity=0.576  Sum_probs=119.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------C
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------G  112 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~  112 (218)
                      ...+|++.+.||+|+||.||+|.+..+++.||||.+....      ....+|+.+++.++||||+++++++..      .
T Consensus        52 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~  125 (420)
T 1j1b_A           52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDE  125 (420)
T ss_dssp             EEEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTE
T ss_pred             ccceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcc
Confidence            3457999999999999999999999999999999986432      123479999999999999999999853      2


Q ss_pred             CEEEEEEecCCCChHHHhhhc----cc---------------------------CCcccc------------ccccCC--
Q 041487          113 RYVYLVFEYLDLDLGSFIRKH----TI---------------------------TSIRPH------------IKEVGS--  147 (218)
Q Consensus       113 ~~~~lv~E~~~~~L~~~~~~~----~~---------------------------~~~~~~------------~~~~g~--  147 (218)
                      ..+++||||+++++.+.+...    ..                           .++++.            +.+||.  
T Consensus       126 ~~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          126 VYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             EEEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             eeEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            347899999998776654321    00                           022222            223332  


Q ss_pred             ---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          148 ---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       148 ---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                                     .|+|||.+.....++.++|||||||++|+|++|+.||.+. ..+.+..+++.++.+
T Consensus       206 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p  276 (420)
T 1j1b_A          206 QLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTP  276 (420)
T ss_dssp             ECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSC
T ss_pred             hcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence                           2999997666657999999999999999999999999987 345666666655544

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.93  E-value=1.9e-25  Score=194.27  Aligned_cols=149  Identities=26%  Similarity=0.438  Sum_probs=122.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|++.+.||+|+||.||+|.++.+++.||+|++.+.. ........+.+|+.+++.++||||+++++++.+...+|
T Consensus       181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~  260 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC  260 (576)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEE
Confidence            56788999999999999999999999999999999997543 22344677889999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------ccc----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEV----------  145 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~----------  145 (218)
                      +||||+++ +|.+++......                             +++|.+           .++          
T Consensus       261 lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~  340 (576)
T 2acx_A          261 LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ  340 (576)
T ss_dssp             EEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCc
Confidence            99999976 998887654321                             333322           222          


Q ss_pred             ------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                            |+ .|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       341 ~~~~~~GT~~Y~APEvl-~~~~~~~~~DiwSLGvilyeLltG~~PF~~~  388 (576)
T 2acx_A          341 TIKGRVGTVGYMAPEVV-KNERYTFSPDWWALGCLLYEMIAGQSPFQQR  388 (576)
T ss_dssp             CEECCCSCGGGCCHHHH-TTCEESSHHHHHHHHHHHHHHHHSSCSSSCS
T ss_pred             cccccCCCccccCHHHH-cCCCCCccchHHHHHHHHHHHHhCCCCCccc
Confidence                  22 39999955 4555899999999999999999999999876

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.93  E-value=1.5e-25  Score=190.68  Aligned_cols=166  Identities=23%  Similarity=0.397  Sum_probs=127.2

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ....+..++|++.+.||+|+||.||+|... .+..||||.++...   ...+.+.+|+.+++.++||||+++++++. ..
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~  255 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS---MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KE  255 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTS---BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SS
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCC---ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CC
Confidence            345677889999999999999999999874 57789999987432   34678999999999999999999999986 56


Q ss_pred             EEEEEEecCCC-ChHHHhhhccc---C--------------------------Cccccc-----------cccC------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~~-----------~~~g------  146 (218)
                      .+++||||+.+ +|.+++.....   .                          ++++.+           .+||      
T Consensus       256 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~  335 (454)
T 1qcf_A          256 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIE  335 (454)
T ss_dssp             SCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBC
T ss_pred             ccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcC
Confidence            78999999986 99999864321   1                          233322           2222      


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcc
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~  205 (218)
                                   ..|+|||.+ ....++.++|||||||++|+|+| |+.||.+.+...+...+.....++.+
T Consensus       336 ~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~  407 (454)
T 1qcf_A          336 DNEYTAREGAKFPIKWTAPEAI-NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRP  407 (454)
T ss_dssp             CHHHHTTCSSSSCGGGSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCC
T ss_pred             CCceeccCCCcccccccCHHHh-ccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCC
Confidence                         239999955 44558999999999999999999 99999987655555555443333333

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.93  E-value=3.3e-26  Score=190.15  Aligned_cols=161  Identities=25%  Similarity=0.421  Sum_probs=124.4

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .++...+|++.+.||+|+||.||+|.++   ..+..||+|.++... .....+.+.+|+.++++++||||+++++++...
T Consensus        40 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~  118 (373)
T 2qol_A           40 KELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY-TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS  118 (373)
T ss_dssp             CBCCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             hhcCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC
Confidence            4567789999999999999999999876   457789999987432 333456799999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g------  146 (218)
                      ...++||||+++ +|.+++......                            +++|.+           .++|      
T Consensus       119 ~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  198 (373)
T 2qol_A          119 KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLE  198 (373)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             CceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence            999999999976 999998654321                            333322           2222      


Q ss_pred             ---------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 ---------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 ---------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                     ..|+|||.+ .+..++.++|||||||++|++++ |+.||.......+...+..
T Consensus       199 ~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~  265 (373)
T 2qol_A          199 DDPEAAYTTRGGKIPIRWTSPEAI-AYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDE  265 (373)
T ss_dssp             ---------------CTTSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHT
T ss_pred             cCCccceeccCCCcCCCccChhhh-ccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence                           139999955 45558999999999999999998 9999987765555554443

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.93  E-value=2.4e-25  Score=181.68  Aligned_cols=150  Identities=28%  Similarity=0.365  Sum_probs=119.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|++.....    .+.+.+|+.+++.+ +||||+++++++......+
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~   81 (330)
T 2izr_A            6 MVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNA   81 (330)
T ss_dssp             EETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEE
T ss_pred             EEcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccE
Confidence            345789999999999999999999999999999999874422    24588999999999 9999999999999999999


Q ss_pred             EEEecCCCChHHHhhhcccC----------------------------Cccc----------------ccccc-------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT----------------------------SIRP----------------HIKEV-------  145 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~----------------------------~~~~----------------~~~~~-------  145 (218)
                      +||||+.++|.+++......                            +++|                .+.+|       
T Consensus        82 lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~  161 (330)
T 2izr_A           82 MVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI  161 (330)
T ss_dssp             EEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred             EEEEeCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence            99999977999998753111                            2222                11222       


Q ss_pred             -----------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          146 -----------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       146 -----------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                                       | ..|+|||. ..+..++.++|||||||++|+|++|+.||.+......
T Consensus       162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~  225 (330)
T 2izr_A          162 DPETKKHIPYREHKSLTGTARYMSINT-HLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTL  225 (330)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSH
T ss_pred             cCCCCccccccccCCcCCCccccChHH-HcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccH
Confidence                             1 34999995 4456689999999999999999999999998644433

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.93  E-value=2.6e-25  Score=183.50  Aligned_cols=163  Identities=28%  Similarity=0.431  Sum_probs=124.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCC---------chHHHHHHHHHHhhCCCCCeeeeeee
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG---------VPSYLIAGVSLLKELEHDNIVRLLDV  108 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~---------~~~~~~~e~~~l~~l~h~~iv~~~~~  108 (218)
                      ...++|++.+.||+|+||.||+|.+.. +..||+|.+........         ..+.+.+|+.+++.++||||++++++
T Consensus        19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   97 (362)
T 3pg1_A           19 AMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDI   97 (362)
T ss_dssp             HTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEE
T ss_pred             HhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeee
Confidence            456889999999999999999998754 89999999975443322         13788999999999999999999999


Q ss_pred             EEe-----CCEEEEEEecCCCChHHHhhhcccC----------------------------Cccccc-----------cc
Q 041487          109 LTT-----GRYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KE  144 (218)
Q Consensus       109 ~~~-----~~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~  144 (218)
                      +..     ...+++||||++++|.+++......                            +++|.+           .+
T Consensus        98 ~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~D  177 (362)
T 3pg1_A           98 FVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICD  177 (362)
T ss_dssp             EEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred             EEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEEEe
Confidence            843     3479999999999888887654211                            333322           22


Q ss_pred             cCC-----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhcc
Q 041487          145 VGS-----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFTA  201 (218)
Q Consensus       145 ~g~-----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~~  201 (218)
                      +|.                 .|+|||.+.....++.++|||||||++|+|++|+.||.+.. .+.+..+....+.
T Consensus       178 fg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~  252 (362)
T 3pg1_A          178 FNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGT  252 (362)
T ss_dssp             TTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred             cCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCC
Confidence            322                 28999976665778999999999999999999999998873 3444444444443

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.93  E-value=4.1e-25  Score=175.45  Aligned_cols=148  Identities=27%  Similarity=0.489  Sum_probs=120.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.++.+++.||+|.+.... .....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   84 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-AVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   84 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGG-CTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeecc-chhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence            468999999999999999999999899999999997543 2345678999999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC--------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG--------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g--------------  146 (218)
                      ||+++ +|.+++......                           ++++.+           .++|              
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  164 (276)
T 2yex_A           85 EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL  164 (276)
T ss_dssp             ECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCB
T ss_pred             EecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcc
Confidence            99987 888887653221                           222221           1121              


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                            ..|+|||.+.....++.++||||||+++|+|++|+.||....
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  212 (276)
T 2yex_A          165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  212 (276)
T ss_dssp             CCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC
T ss_pred             cCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc
Confidence                  239999966555545778999999999999999999998763

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.93  E-value=2.9e-25  Score=183.19  Aligned_cols=158  Identities=23%  Similarity=0.429  Sum_probs=127.5

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...+..++|++.+.||+|+||.||+|.+..++..||+|++.... .....+.+.+|+.+++.++||||+++++++...+.
T Consensus        27 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  105 (360)
T 3eqc_A           27 VGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE  105 (360)
T ss_dssp             CCCCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC-CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTE
T ss_pred             ccccccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc-CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCE
Confidence            34566789999999999999999999999999999999997542 33445788999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      .++||||+++ +|.+++......                            +++|.+           .++|        
T Consensus       106 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  185 (360)
T 3eqc_A          106 ISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  185 (360)
T ss_dssp             EEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc
Confidence            9999999987 998887653221                            333322           2333        


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                              ..|+|||. ..+..++.++|||||||++|+|++|+.||...+...+..
T Consensus       186 ~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~  240 (360)
T 3eqc_A          186 MANSFVGTRSYMSPER-LQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL  240 (360)
T ss_dssp             C----CCCCTTCCHHH-HTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHH
T ss_pred             cccCCCCCCCeECHHH-HcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                    23999995 455568999999999999999999999998775554433

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.93  E-value=3.6e-25  Score=187.12  Aligned_cols=162  Identities=28%  Similarity=0.607  Sum_probs=127.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC------CCCCeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL------EHDNIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~  111 (218)
                      ....+|++.+.||+|+||.||+|.+..+++.||+|+++..   ....+.+.+|+.+++.+      +|+||+++++.+..
T Consensus        94 ~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~  170 (429)
T 3kvw_A           94 HVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE---KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF  170 (429)
T ss_dssp             EETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE
T ss_pred             cccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc---cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc
Confidence            3456799999999999999999999999999999998632   23345677788877776      57799999999999


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC-----------------------------Cccc-------------cccccCC--
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRP-------------HIKEVGS--  147 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~-------------~~~~~g~--  147 (218)
                      ...++++|||++++|.+++......                             +++|             ++.+||.  
T Consensus       171 ~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~  250 (429)
T 3kvw_A          171 RNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC  250 (429)
T ss_dssp             TTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             CCeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence            9999999999999999888765321                             2222             3334443  


Q ss_pred             -------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccC
Q 041487          148 -------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALT  203 (218)
Q Consensus       148 -------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~  203 (218)
                                   .|+|||.+. +..++.++|||||||++|+|++|++||.+. ..+.+..+++.++.++
T Consensus       251 ~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~  319 (429)
T 3kvw_A          251 YEHQRVYTYIQSRFYRAPEVIL-GARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPS  319 (429)
T ss_dssp             ETTCCCCSSCSCGGGCCHHHHH-TBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCC
T ss_pred             ecCCcccccCCCCCccChHHHh-CCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCC
Confidence                         299999654 455899999999999999999999999987 4455666666555544

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.93  E-value=7.1e-25  Score=175.88  Aligned_cols=154  Identities=20%  Similarity=0.332  Sum_probs=123.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|.+.+.||+|+||.||+|.+..+++.+|+|++..... .....+.+.+|+.+++.++||||+++++++...+..+
T Consensus        12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (294)
T 2rku_A           12 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVF   91 (294)
T ss_dssp             TTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             CcccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEE
Confidence            456789999999999999999999999999999999976543 2344678889999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-----------  146 (218)
                      ++|||+++ +|.+++......                           ++++.+           .++|           
T Consensus        92 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~  171 (294)
T 2rku_A           92 VVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER  171 (294)
T ss_dssp             EEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             EEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCccc
Confidence            99999986 888887654321                           222221           1221           


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                             ..|+|||.+ .+..++.++||||||+++|+|++|+.||........
T Consensus       172 ~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~  223 (294)
T 2rku_A          172 KKVLCGTPNYIAPEVL-SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET  223 (294)
T ss_dssp             BCCCCSCCSSCCHHHH-TTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             cccccCCCCcCCcchh-ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                   239999954 555689999999999999999999999987654433

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.93  E-value=5.8e-25  Score=179.92  Aligned_cols=156  Identities=21%  Similarity=0.332  Sum_probs=124.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ....+|.+.+.||+|+||.||++.+..+++.+|+|++..... .....+.+.+|+.+++.++||||+++++++...+..+
T Consensus        38 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  117 (335)
T 2owb_A           38 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVF  117 (335)
T ss_dssp             TTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             ccCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEE
Confidence            446789999999999999999999999999999999976543 2345678899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-----------  146 (218)
                      +||||+++ +|.+++......                           ++++.+           .++|           
T Consensus       118 lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  197 (335)
T 2owb_A          118 VVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER  197 (335)
T ss_dssp             EEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             EEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCccc
Confidence            99999986 888887653221                           222221           2222           


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSL  194 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~  194 (218)
                             ..|+|||.+ .+..++.++||||||+++|+|++|+.||..........
T Consensus       198 ~~~~~gt~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~  251 (335)
T 2owb_A          198 KKVLCGTPNYIAPEVL-SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYL  251 (335)
T ss_dssp             BCCCCSCCSSCCHHHH-HTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH
T ss_pred             ccccCCCccccCHHHh-ccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHH
Confidence                   239999955 45558999999999999999999999998765444333

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.93  E-value=2.2e-25  Score=177.88  Aligned_cols=159  Identities=23%  Similarity=0.346  Sum_probs=122.1

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ...+..++|++.+.||+|+||.||+|.+. .+..||+|.++...   ...+.+.+|+.+++.++||||+++++++.....
T Consensus        18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   93 (283)
T 3gen_A           18 SWEIDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGS---MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP   93 (283)
T ss_dssp             TTBCCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTS---BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             CccCCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCC---CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCC
Confidence            44577889999999999999999999875 67789999987432   234678999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      .++||||+++ +|.+++......                            +++|.+           .++|        
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  173 (283)
T 3gen_A           94 IFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD  173 (283)
T ss_dssp             EEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH
T ss_pred             eEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccccc
Confidence            9999999976 899988652211                            333322           2222        


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                 ..|+|||.+. +..++.++||||||+++|+|+| |+.||...+.......+..
T Consensus       174 ~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~  236 (283)
T 3gen_A          174 EYTSSVGSKFPVRWSPPEVLM-YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ  236 (283)
T ss_dssp             HHHSTTSTTSCGGGCCHHHHH-HCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHT
T ss_pred             ccccccCCccCcccCCHHHhc-cCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhc
Confidence                       1399999554 4458999999999999999999 9999998765555554443

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.93  E-value=2.8e-25  Score=184.53  Aligned_cols=149  Identities=30%  Similarity=0.488  Sum_probs=113.0

Q ss_pred             cceeE--EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           41 WNYKV--VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        41 ~~~~~--~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..|.+  .+.||+|+||.||+|.+..++..||+|+++...  ....+.+.+|+.++++++||||+++++++...+.+++|
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv  164 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG--MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLV  164 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            34555  678999999999999999999999999987432  23457889999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Cccccc-------------cccC----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-------------KEVG----------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-------------~~~g----------  146 (218)
                      |||+++ +|.+++......                            +++|.+             .++|          
T Consensus       165 ~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~  244 (373)
T 2x4f_A          165 MEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK  244 (373)
T ss_dssp             EECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB
T ss_pred             EeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc
Confidence            999986 888877543211                            333322             2222          


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                             ..|+|||. ..+..++.++|||||||++|+|++|+.||.+.+....
T Consensus       245 ~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~  296 (373)
T 2x4f_A          245 LKVNFGTPEFLAPEV-VNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAET  296 (373)
T ss_dssp             CCCCCSSCTTCCHHH-HTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             cccccCCCcEeChhh-ccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                   23999995 4556689999999999999999999999988754433

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.93  E-value=1.5e-25  Score=184.15  Aligned_cols=142  Identities=28%  Similarity=0.522  Sum_probs=114.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..++|++.+.||+|+||.||+|.++.+++.||+|++++...      ...+|+.++.++ +||||+++++++.+...+|+
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l   93 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYV   93 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence            35779999999999999999999999999999999975432      134678888887 79999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Ccccc---------------ccccC--------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRPH---------------IKEVG--------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~~---------------~~~~g--------  146 (218)
                      ||||+++ +|.+++......                           +++|.               +.++|        
T Consensus        94 v~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~  173 (342)
T 2qr7_A           94 VTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAE  173 (342)
T ss_dssp             EECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCT
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCC
Confidence            9999986 888887654321                           22222               12222        


Q ss_pred             ----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                ..|+|||.+. +..++.++|||||||++|+|++|+.||...
T Consensus       174 ~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~il~ell~g~~Pf~~~  223 (342)
T 2qr7_A          174 NGLLMTPCYTANFVAPEVLE-RQGYDAACDIWSLGVLLYTMLTGYTPFANG  223 (342)
T ss_dssp             TCCBCCSSCCSSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             CCceeccCCCccccCHHHhc-CCCCCCccCeeeHhHHHHHHhcCCCCCCCC
Confidence                      2399999654 444788999999999999999999999865

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.93  E-value=1.5e-25  Score=199.04  Aligned_cols=162  Identities=22%  Similarity=0.333  Sum_probs=126.9

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG  112 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~  112 (218)
                      ...+..++|++++.||+|+||.||+|.++.+++.||+|++++.. ......+.+..|..++..+ .||+|+++++++.+.
T Consensus       335 ~~~~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~  414 (674)
T 3pfq_A          335 RDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM  414 (674)
T ss_dssp             -----CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCS
T ss_pred             cccccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeC
Confidence            34466789999999999999999999999999999999997542 2234457788899999888 799999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------  146 (218)
                      ..+|+||||+++ +|.+++......                           +++|.+           .+||       
T Consensus       415 ~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~  494 (674)
T 3pfq_A          415 DRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW  494 (674)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred             CEEEEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence            999999999987 898888654321                           333332           2232       


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                 ..|+|||. ..+..++.++|||||||++|||++|+.||.+.+...+...+.
T Consensus       495 ~~~~~~~~~GT~~Y~APE~-l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~  555 (674)
T 3pfq_A          495 DGVTTKTFCGTPDYIAPEI-IAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM  555 (674)
T ss_dssp             TTCCBCCCCSCSSSCCHHH-HTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             CCcccccccCCCcccCHhh-hcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence                       23999995 456668999999999999999999999999876555555444

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.93  E-value=2.5e-25  Score=183.23  Aligned_cols=166  Identities=33%  Similarity=0.481  Sum_probs=112.7

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      .......++|++.+.||+|+||.||+|.++.++..||+|.+....   .......+++..+..++||||+++++++....
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~   92 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP---RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLG   92 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT---TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEEC
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc---cccHHHHHHHHHHHhcCCCCcccHHHhhhccc
Confidence            334456789999999999999999999999999999999986432   22345677888889999999999999986432


Q ss_pred             -------EEEEEEecCCCChHHHhhhc----c---------------------------c--CCccccc-----------
Q 041487          114 -------YVYLVFEYLDLDLGSFIRKH----T---------------------------I--TSIRPHI-----------  142 (218)
Q Consensus       114 -------~~~lv~E~~~~~L~~~~~~~----~---------------------------~--~~~~~~~-----------  142 (218)
                             .+++||||++++|.+.+...    .                           .  .+++|.+           
T Consensus        93 ~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~k  172 (360)
T 3e3p_A           93 ERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLK  172 (360)
T ss_dssp             SSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEE
T ss_pred             cccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEE
Confidence                   38999999998765543320    0                           0  0222221           


Q ss_pred             -cccCC-----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhccc
Q 041487          143 -KEVGS-----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFTAL  202 (218)
Q Consensus       143 -~~~g~-----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~~~  202 (218)
                       .++|.                 .|+|||.+.....++.++|||||||++|+|++|+.||.+.+ ...+..+.+..+.+
T Consensus       173 l~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~  251 (360)
T 3e3p_A          173 LCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCP  251 (360)
T ss_dssp             ECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCC
T ss_pred             EeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCC
Confidence             22222                 29999977666668999999999999999999999999873 34445555444433

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.93  E-value=8.8e-25  Score=177.60  Aligned_cols=161  Identities=41%  Similarity=0.702  Sum_probs=122.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEc-cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC---CCCCeeeeeeeEE----
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNL-ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---EHDNIVRLLDVLT----  110 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~----  110 (218)
                      ..++|++.+.||+|+||.||+|.+. .+++.||+|+++...........+.+|+.+++.+   +||||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            3478999999999999999999985 6788999999976544444445567787777766   8999999999987    


Q ss_pred             -eCCEEEEEEecCCCChHHHhhhcccC-----------------------------Cccccc-----------cccC---
Q 041487          111 -TGRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG---  146 (218)
Q Consensus       111 -~~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g---  146 (218)
                       .....++||||++++|.+++......                             ++++.+           .++|   
T Consensus        89 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~  168 (326)
T 1blx_A           89 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  168 (326)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCcccc
Confidence             56779999999999999988664321                             222221           2222   


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhc
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFT  200 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~  200 (218)
                                    ..|+|||.+ .+..++.++|||||||++|+|++|+.||.+.. .+.+..+....+
T Consensus       169 ~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~  236 (326)
T 1blx_A          169 IYSFQMALTSVVVTLWYRAPEVL-LQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIG  236 (326)
T ss_dssp             CCCGGGGGCCCCCCCTTCCHHHH-TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             cccCCCCccccccccceeCHHHH-hcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcC
Confidence                          238999954 45558999999999999999999999998873 344445554443

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.93  E-value=3.2e-25  Score=176.45  Aligned_cols=150  Identities=28%  Similarity=0.531  Sum_probs=110.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+.... ......+.+.+|+.+++.++||||+++++++...+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL   88 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence            3468999999999999999999998899999999997543 223446789999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-----------  146 (218)
                      +|||+++ +|.+++......                            +++|.+           .++|           
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  168 (278)
T 3cok_A           89 VLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK  168 (278)
T ss_dssp             EEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-----
T ss_pred             EEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc
Confidence            9999987 898887654211                            233322           1222           


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                             ..|+|||.+ .+..++.++||||||+++|+|++|+.||.....
T Consensus       169 ~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  217 (278)
T 3cok_A          169 HYTLCGTPNYISPEIA-TRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV  217 (278)
T ss_dssp             ------------------------CTHHHHHHHHHHHHHHSSCSSCCCSC
T ss_pred             ceeccCCCCcCCcchh-cCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH
Confidence                   239999954 455588999999999999999999999987643

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.93  E-value=7.7e-25  Score=178.62  Aligned_cols=161  Identities=19%  Similarity=0.348  Sum_probs=126.0

Q ss_pred             hhhhccceeEE-EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCC
Q 041487           36 EKVKDWNYKVV-EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGR  113 (218)
Q Consensus        36 ~~~~~~~~~~~-~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~  113 (218)
                      .+...+.|.+. +.||+|+||.||+|.++.+++.||+|+++...........+.+|+.+++.+ .||||+++++++....
T Consensus        23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~  102 (327)
T 3lm5_A           23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS  102 (327)
T ss_dssp             HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence            33446678887 899999999999999999999999999986555555577899999999999 5699999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc--------------ccc----
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI--------------KEV----  145 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~--------------~~~----  145 (218)
                      ..++||||+.+ +|.+++......                             +++|.+              .++    
T Consensus       103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~  182 (327)
T 3lm5_A          103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSR  182 (327)
T ss_dssp             EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCE
T ss_pred             eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCcccc
Confidence            99999999987 888877442111                             233321              122    


Q ss_pred             ------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          146 ------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       146 ------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                  | ..|+|||. ..+..++.++|||||||++|+|++|+.||...+.......+.
T Consensus       183 ~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~  246 (327)
T 3lm5_A          183 KIGHACELREIMGTPEYLAPEI-LNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNIS  246 (327)
T ss_dssp             EC---------CCCGGGCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             ccCCccccccccCCcCccCCee-ecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHH
Confidence                        2 23999995 455668999999999999999999999998875554444433

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.93  E-value=1.4e-25  Score=179.82  Aligned_cols=162  Identities=21%  Similarity=0.364  Sum_probs=123.8

Q ss_pred             hhhhccceeEEE-EeeecCceEEEEEEE--ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           36 EKVKDWNYKVVE-KIGQGVFGEVYKCLN--LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        36 ~~~~~~~~~~~~-~ig~G~~g~v~~~~~--~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ..+...+|++.+ .||+|+||.||+|.+  ...+..||+|+++.........+.+.+|+.+++.++||||+++++++ ..
T Consensus        11 ~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~   89 (291)
T 1xbb_A           11 VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EA   89 (291)
T ss_dssp             CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ES
T ss_pred             eeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CC
Confidence            345678899998 999999999999954  45678999999976544455577899999999999999999999999 56


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------  146 (218)
                      ...++||||+++ +|.+++......                           ++++.+           .++|       
T Consensus        90 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  169 (291)
T 1xbb_A           90 ESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  169 (291)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             CCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence            678999999986 999988764321                           333322           1221       


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHh
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYF  199 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~  199 (218)
                                    ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...+...+...+...
T Consensus       170 ~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~  236 (291)
T 1xbb_A          170 DENYYKAQTHGKWPVKWYAPECI-NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG  236 (291)
T ss_dssp             TCSEEEC----CCCGGGCCHHHH-HHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT
T ss_pred             CCCcccccccCCCCceeeChHHh-ccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC
Confidence                          239999965 44457889999999999999999 99999987666655555543

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.93  E-value=4e-25  Score=181.56  Aligned_cols=149  Identities=28%  Similarity=0.554  Sum_probs=120.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----C
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----R  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~  113 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+... ........+.+|+.+++.++||||+++++++...     .
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   87 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF-DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN   87 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc-ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence            467899999999999999999999999999999998632 2223456788999999999999999999987653     6


Q ss_pred             EEEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------cccC----------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g----------  146 (218)
                      ..+++|||++++|.+++......                          ++++.+           .++|          
T Consensus        88 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  167 (353)
T 2b9h_A           88 EVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAA  167 (353)
T ss_dssp             CEEEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC----
T ss_pred             eEEEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccccccc
Confidence            79999999999888887653221                          222221           1222          


Q ss_pred             ------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 ------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 ------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                        ..|+|||.+.....++.++|||||||++|+|++|+.||.+.+
T Consensus       168 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  227 (353)
T 2b9h_A          168 DNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD  227 (353)
T ss_dssp             ------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                              239999977666778999999999999999999999998874

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.5e-24  Score=175.37  Aligned_cols=150  Identities=27%  Similarity=0.473  Sum_probs=113.9

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .....+.|++.+.||+|+||.||+|.+..++..||+|.+...    ...+.+.+|+.+++.++||||+++++++......
T Consensus        24 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   99 (314)
T 3com_A           24 TKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE----SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDL   99 (314)
T ss_dssp             ------CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT----SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEE
T ss_pred             hhcchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch----HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEE
Confidence            344567899999999999999999999989999999998743    2346789999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---------  146 (218)
                      ++||||+++ +|.+++......                            +++|.+           .++|         
T Consensus       100 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~  179 (314)
T 3com_A          100 WIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM  179 (314)
T ss_dssp             EEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB
T ss_pred             EEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc
Confidence            999999988 999888632211                            222221           1221         


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                               ..|+|||.+ .+..++.++||||||+++|+|++|+.||......
T Consensus       180 ~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  231 (314)
T 3com_A          180 AKRNTVIGTPFWMAPEVI-QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM  231 (314)
T ss_dssp             SCBCCCCSCGGGCCHHHH-SSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             cccCccCCCCCccChhhc-CCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH
Confidence                     238999954 4556899999999999999999999999876443

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.93  E-value=2.2e-25  Score=186.20  Aligned_cols=149  Identities=31%  Similarity=0.534  Sum_probs=118.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC--CCCeeeeeeeEEeCCEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE--HDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~~~~  115 (218)
                      +....|++.+.||+|+||.||+|.+.. ++.||||++..........+.+.+|+.+++.+.  ||||+++++++.....+
T Consensus        53 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~  131 (390)
T 2zmd_A           53 VKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI  131 (390)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             ccCCceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEE
Confidence            345569999999999999999998754 899999999865555555678999999999996  59999999999999999


Q ss_pred             EEEEecCCCChHHHhhhcccC---------------------------Cccccc----------ccc-------------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI----------KEV-------------  145 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~----------~~~-------------  145 (218)
                      ++|||+..++|.+++......                           +++|.+          .+|             
T Consensus       132 ~lv~E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~~~~  211 (390)
T 2zmd_A          132 YMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSV  211 (390)
T ss_dssp             EEEEECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEESSSCEEECCCSSSCCC-------
T ss_pred             EEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEECCeEEEEecCccccccCCCccc
Confidence            999997777999888664321                           333322          222             


Q ss_pred             ------CC-cccCcccccC----------CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ------GS-PYKAPESRIR----------SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ------g~-~y~aPE~~~~----------~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                            |+ .|+|||.+..          ...++.++|||||||++|+|++|+.||...
T Consensus       212 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  270 (390)
T 2zmd_A          212 VKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  270 (390)
T ss_dssp             --CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhh
Confidence                  22 3999996643          235889999999999999999999999865

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.93  E-value=1.5e-25  Score=181.11  Aligned_cols=164  Identities=23%  Similarity=0.396  Sum_probs=129.1

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      ...+..++|.+.+.||+|+||.||+|.+.     .++..||+|.++.. ......+.+.+|+.+++.++||||+++++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   95 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN-ASPSELRDLLSEFNVLKQVNHPHVIKLYGAC   95 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC-CCHHHHHHHHHHHHHHhhCCCCceeeEEEEE
Confidence            44566789999999999999999999873     34588999998743 2334457889999999999999999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhccc-------------------------C--------------------------C
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTI-------------------------T--------------------------S  137 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~-------------------------~--------------------------~  137 (218)
                      ...+..++||||+++ +|.+++.....                         .                          +
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~d  175 (314)
T 2ivs_A           96 SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRD  175 (314)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             ecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccc
Confidence            999999999999985 99999876422                         0                          2


Q ss_pred             ccccc-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCC
Q 041487          138 IRPHI-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFP  185 (218)
Q Consensus       138 ~~~~~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~  185 (218)
                      ++|.+           .++|                    ..|+|||.+. +..++.++|||||||++|+|++ |+.||.
T Consensus       176 ikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~el~t~g~~p~~  254 (314)
T 2ivs_A          176 LAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLF-DHIYTTQSDVWSFGVLLWEIVTLGGNPYP  254 (314)
T ss_dssp             CSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHH-HCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             cchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhc-CCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            33321           2222                    1299999654 4558999999999999999999 999999


Q ss_pred             CCCcchHHHHHHHhc
Q 041487          186 CGKKDHLSLIVRYFT  200 (218)
Q Consensus       186 ~~~~~~~~~~~~~~~  200 (218)
                      +.....+...+....
T Consensus       255 ~~~~~~~~~~~~~~~  269 (314)
T 2ivs_A          255 GIPPERLFNLLKTGH  269 (314)
T ss_dssp             TCCGGGHHHHHHTTC
T ss_pred             CCCHHHHHHHhhcCC
Confidence            887777766665443

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.93  E-value=2e-25  Score=182.64  Aligned_cols=162  Identities=28%  Similarity=0.459  Sum_probs=126.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      ...+..++|++.+.||+|+||.||+|.+..     ++..||+|.++... .....+.+.+|+.+++.++||||+++++++
T Consensus        41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  119 (343)
T 1luf_A           41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-SADMQADFQREAALMAEFDNPNIVKLLGVC  119 (343)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            345677899999999999999999999863     45889999987432 333467889999999999999999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhccc-------------------------C--------------------------C
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTI-------------------------T--------------------------S  137 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~-------------------------~--------------------------~  137 (218)
                      ...+..++||||+++ +|.+++.....                         .                          +
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~D  199 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD  199 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            999999999999987 99999876321                         0                          2


Q ss_pred             ccccc-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCC
Q 041487          138 IRPHI-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFP  185 (218)
Q Consensus       138 ~~~~~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~  185 (218)
                      ++|.+           .++|                    ..|+|||.+. +..++.++|||||||++|+|++ |+.||.
T Consensus       200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Di~slG~il~el~t~g~~p~~  278 (343)
T 1luf_A          200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF-YNRYTTESDVWAYGVVLWEIFSYGLQPYY  278 (343)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhc-cCCcCcccccHHHHHHHHHHHhcCCCcCC
Confidence            22221           2222                    1399999554 4558999999999999999999 999998


Q ss_pred             CCCcchHHHHHHH
Q 041487          186 CGKKDHLSLIVRY  198 (218)
Q Consensus       186 ~~~~~~~~~~~~~  198 (218)
                      +.....+...+..
T Consensus       279 ~~~~~~~~~~~~~  291 (343)
T 1luf_A          279 GMAHEEVIYYVRD  291 (343)
T ss_dssp             TSCHHHHHHHHHT
T ss_pred             CCChHHHHHHHhC
Confidence            8765555544443

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.93  E-value=7.2e-25  Score=184.69  Aligned_cols=151  Identities=26%  Similarity=0.436  Sum_probs=115.9

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC------CCCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE------PEGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      .....++|.+.+.||+|+||.||+|.++.+++.||+|++.+...      .......+.+|+.++++++||||+++++++
T Consensus       130 ~~~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~  209 (419)
T 3i6u_A          130 PKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF  209 (419)
T ss_dssp             CHHHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEE
T ss_pred             chhhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            34456889999999999999999999999999999999975421      122234688999999999999999999997


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccCC
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVGS  147 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g~  147 (218)
                      . ....++||||+++ +|.+++......                           +++|.              +.++|.
T Consensus       210 ~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~  288 (419)
T 3i6u_A          210 D-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGH  288 (419)
T ss_dssp             E-SSEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSST
T ss_pred             e-cCceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeeccc
Confidence            5 4558999999987 888877543221                           22222              223322


Q ss_pred             -----------------cccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 -----------------PYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 -----------------~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                       .|+|||.+..  ...++.++|||||||++|+|++|+.||...
T Consensus       289 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~  347 (419)
T 3i6u_A          289 SKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH  347 (419)
T ss_dssp             TTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             ceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence                             3999997643  355788999999999999999999999876

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.93  E-value=1.6e-24  Score=179.43  Aligned_cols=157  Identities=24%  Similarity=0.470  Sum_probs=122.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC------CchHHHHHHHHHHhhC-CCCCeeeeeeeEEeC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE------GVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTG  112 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~------~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~  112 (218)
                      .++|++.+.||+|+||.||+|.++.+|+.||||+++......      ...+.+.+|+.+++.+ +||||+++++++...
T Consensus        93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  172 (365)
T 2y7j_A           93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESS  172 (365)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBS
T ss_pred             hhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeC
Confidence            467999999999999999999998899999999997543221      1245778999999999 899999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------  146 (218)
                      ...++||||+++ +|.+++......                           +++|.+           .++|       
T Consensus       173 ~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~  252 (365)
T 2y7j_A          173 SFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEP  252 (365)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             CEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccCC
Confidence            999999999987 999888654221                           333322           2222       


Q ss_pred             ----------CcccCcccccC-----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 041487          147 ----------SPYKAPESRIR-----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ----------~~y~aPE~~~~-----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~  196 (218)
                                ..|+|||.+..     ...++.++|||||||++|+|++|+.||...+.......+
T Consensus       253 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i  317 (365)
T 2y7j_A          253 GEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMI  317 (365)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             CcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence                      23999996542     234788999999999999999999999876544444433

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.93  E-value=9.2e-25  Score=177.85  Aligned_cols=145  Identities=28%  Similarity=0.534  Sum_probs=117.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEe--CCE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTT--GRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~--~~~  114 (218)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|+++.     ...+.+.+|+.+++++. ||||+++++++..  ...
T Consensus        33 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-----~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~  107 (330)
T 3nsz_A           33 GNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-----VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRT  107 (330)
T ss_dssp             EEGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-----CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCC
T ss_pred             cCCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc-----cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCc
Confidence            346789999999999999999999999999999999863     23577999999999996 9999999999987  678


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC------------------------Ccccc------------ccccCC----------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT------------------------SIRPH------------IKEVGS----------  147 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~------------------------~~~~~------------~~~~g~----------  147 (218)
                      .+++|||+++ +|.+++......                        +++|.            +.++|.          
T Consensus       108 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~  187 (330)
T 3nsz_A          108 PALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY  187 (330)
T ss_dssp             EEEEEECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCC
T ss_pred             eEEEEeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCcc
Confidence            9999999986 777776432111                        33332            223322          


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                             .|+|||.+.....++.++|||||||++|+|++|+.||...
T Consensus       188 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~  234 (330)
T 3nsz_A          188 NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  234 (330)
T ss_dssp             CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence                   2899997766577999999999999999999999999544

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.93  E-value=4.1e-25  Score=174.61  Aligned_cols=156  Identities=25%  Similarity=0.359  Sum_probs=123.3

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      .+..++|++.+.||+|+||.||+|.+. ++..||+|.+....   ...+.+.+|+.+++.++||||+++++++...+..+
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   79 (267)
T 3t9t_A            4 VIDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGA---MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC   79 (267)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTT---BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCE
T ss_pred             EEchhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccC---CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeE
Confidence            356789999999999999999999975 67889999987433   23467899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----------  146 (218)
                      ++|||+++ +|.+++......                            +++|.+           .++|          
T Consensus        80 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~  159 (267)
T 3t9t_A           80 LVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  159 (267)
T ss_dssp             EEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred             EEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccccc
Confidence            99999986 999998764321                            222221           1221          


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                               ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...........+.
T Consensus       160 ~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~  219 (267)
T 3t9t_A          160 TSSTGTKFPVKWASPEVF-SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIS  219 (267)
T ss_dssp             HSTTSTTCCGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHH
T ss_pred             cccccccccccccChhhh-cCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHh
Confidence                     139999954 45558999999999999999999 899998875555444443

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.93  E-value=8e-25  Score=176.03  Aligned_cols=153  Identities=23%  Similarity=0.391  Sum_probs=120.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++.+.||+|+||.||+|.+..++..+|+|.+...  .....+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   94 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK--SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM   94 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC--CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence            457799999999999999999999999999999998643  334567899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Cccccc-----------ccc-------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEV-------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~-------------  145 (218)
                      |||+++ +|.+++......                            +++|.+           .++             
T Consensus        95 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  174 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKR  174 (302)
T ss_dssp             EECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-
T ss_pred             EEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccccccc
Confidence            999987 888876542211                            233322           122             


Q ss_pred             ----C-CcccCccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          146 ----G-SPYKAPESRI----RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       146 ----g-~~y~aPE~~~----~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                          | ..|+|||.+.    ....++.++||||||+++|+|++|+.||...+.....
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~  231 (302)
T 2j7t_A          175 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVL  231 (302)
T ss_dssp             ----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH
T ss_pred             ccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHH
Confidence                2 2399999653    4566889999999999999999999999876544433

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.93  E-value=1.5e-24  Score=173.62  Aligned_cols=147  Identities=25%  Similarity=0.379  Sum_probs=118.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe----CCE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT----GRY  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~  114 (218)
                      ....|++.+.||+|+||.||+|.+..++..||+|.+..........+.+.+|+.+++.++||||+++++++..    ...
T Consensus        24 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~  103 (290)
T 1t4h_A           24 DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             TSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEE
T ss_pred             CceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCce
Confidence            3455899999999999999999999999999999998655555567789999999999999999999999864    567


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc------------cccC------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI------------KEVG------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~------------~~~g------  146 (218)
                      +++||||+++ +|.+++......                             +++|.+            .++|      
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~  183 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  183 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EEEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccc
Confidence            9999999976 998888653221                             222222            1222      


Q ss_pred             ----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                ..|+|||.+ .+ .++.++|||||||++|+|++|+.||...
T Consensus       184 ~~~~~~~~~t~~y~aPE~~-~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~  232 (290)
T 1t4h_A          184 ASFAKAVIGTPEFMAPEMY-EE-KYDESVDVYAFGMCMLEMATSEYPYSEC  232 (290)
T ss_dssp             TTSBEESCSSCCCCCGGGG-GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccccccccCCcCcCCHHHH-hc-cCCCcchHHHHHHHHHHHHhCCCCCCCc
Confidence                      239999954 33 4899999999999999999999999875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.93  E-value=2.4e-25  Score=177.62  Aligned_cols=162  Identities=23%  Similarity=0.390  Sum_probs=122.2

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  109 (218)
                      .....+..++|++.+.||+|+||.||+|.+..+   +..||+|.++.. ......+.+.+|+.++++++||||+++++++
T Consensus         7 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   85 (281)
T 1mp8_A            7 TRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVI   85 (281)
T ss_dssp             --CCBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT-TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ccceEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCccceEEEEE
Confidence            344567788999999999999999999998643   457999987643 2234456789999999999999999999998


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC---
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---  146 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---  146 (218)
                      . .+..++||||+++ +|.+++......                            +++|.+           .++|   
T Consensus        86 ~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  164 (281)
T 1mp8_A           86 T-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  164 (281)
T ss_dssp             C-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred             c-cCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECcccccc
Confidence            4 4568999999997 999988754311                            333322           2222   


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                      ..|+|||.+ .+..++.++|||||||++|+|++ |..||.+.........+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~  231 (281)
T 1mp8_A          165 YMEDSTYYKASKGKLPIKWMAPESI-NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIE  231 (281)
T ss_dssp             --------------CCGGGCCHHHH-HHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHH
T ss_pred             ccCcccccccccCCCcccccChhhc-ccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHH
Confidence                            139999954 45568999999999999999997 999999875555444443

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.93  E-value=4.4e-25  Score=183.76  Aligned_cols=168  Identities=23%  Similarity=0.411  Sum_probs=130.3

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccC-------CcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeee
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLET-------GKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVR  104 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~-------~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~  104 (218)
                      .....+..++|.+.+.||+|+||.||+|.+...       +..||+|+++.. ......+.+.+|+.+++++ +||||++
T Consensus        61 ~~~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~  139 (382)
T 3tt0_A           61 DPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD-ATEKDLSDLISEMEMMKMIGKHKNIIN  139 (382)
T ss_dssp             CTTTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CcccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc-cCHHHHHHHHHHHHHHHHhcCCchhhh
Confidence            334467778999999999999999999997532       357999998743 2334457789999999999 9999999


Q ss_pred             eeeeEEeCCEEEEEEecCCC-ChHHHhhhccc-----------------C--------------------------Cccc
Q 041487          105 LLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTI-----------------T--------------------------SIRP  140 (218)
Q Consensus       105 ~~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~-----------------~--------------------------~~~~  140 (218)
                      +++++...+..++||||+++ +|.+++.....                 .                          +++|
T Consensus       140 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp  219 (382)
T 3tt0_A          140 LLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAA  219 (382)
T ss_dssp             EEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCG
T ss_pred             heeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCc
Confidence            99999999999999999987 99999876431                 0                          2333


Q ss_pred             cc-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC
Q 041487          141 HI-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK  188 (218)
Q Consensus       141 ~~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~  188 (218)
                      .+           .++|                    ..|+|||.+. +..++.++|||||||++|+|++ |+.||.+.+
T Consensus       220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~DiwslG~il~ellt~g~~p~~~~~  298 (382)
T 3tt0_A          220 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF-DRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP  298 (382)
T ss_dssp             GGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHH-SCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhc-CCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            22           2222                    1399999554 5568999999999999999999 999999887


Q ss_pred             cchHHHHHHHhccc
Q 041487          189 KDHLSLIVRYFTAL  202 (218)
Q Consensus       189 ~~~~~~~~~~~~~~  202 (218)
                      ...+...+.....+
T Consensus       299 ~~~~~~~~~~~~~~  312 (382)
T 3tt0_A          299 VEELFKLLKEGHRM  312 (382)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCCCC
Confidence            66666655544333

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.93  E-value=3.5e-25  Score=188.29  Aligned_cols=159  Identities=25%  Similarity=0.455  Sum_probs=123.2

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ....+..++|++.+.||+|+||.||+|.+.. +..||+|.++...   ...+.+.+|+.++++++||||+++++++.. .
T Consensus       177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~  251 (452)
T 1fmk_A          177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGT---MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E  251 (452)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             cccccChhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCC---CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-C
Confidence            3455778899999999999999999999753 5679999987432   235789999999999999999999999866 6


Q ss_pred             EEEEEEecCCC-ChHHHhhhccc---C--------------------------Ccccc-----------ccccC------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPH-----------IKEVG------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~-----------~~~~g------  146 (218)
                      ..++||||+++ +|.+++.....   .                          ++++.           +.++|      
T Consensus       252 ~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~  331 (452)
T 1fmk_A          252 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  331 (452)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             ceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecC
Confidence            68999999986 99999875311   1                          22222           12222      


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                   ..|+|||.+. +..++.++|||||||++|+|++ |+.||.+.....+...+..
T Consensus       332 ~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~  396 (452)
T 1fmk_A          332 DNEYTARQGAKFPIKWTAPEAAL-YGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER  396 (452)
T ss_dssp             -----------CCGGGSCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHT
T ss_pred             CCceecccCCcccccccCHhHHh-cCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence                         2399999654 4558999999999999999999 9999998755554444443

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.93  E-value=4.7e-25  Score=179.88  Aligned_cols=166  Identities=23%  Similarity=0.414  Sum_probs=121.6

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcE----EEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK----VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~----vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      ...+..++|++.+.||+|+||.||+|.+..++..    ||+|.++.. ......+.+.+|+.++++++||||+++++++.
T Consensus         9 ~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   87 (327)
T 3poz_A            9 LRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICL   87 (327)
T ss_dssp             SEECCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEE
T ss_pred             HhhcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc-cCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEe
Confidence            3446778899999999999999999998777665    577776532 23345678999999999999999999999998


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----  146 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----  146 (218)
                      ... .++++|++.+ +|.+++......                            +++|.+           .+||    
T Consensus        88 ~~~-~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           88 TST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             SSS-EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred             cCC-eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeE
Confidence            765 6778888876 898888664321                            333332           2222    


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccC
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALT  203 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~  203 (218)
                                      ..|+|||.+. +..++.++|||||||++|+|+| |+.||.+.....+...+.....++
T Consensus       167 ~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~  239 (327)
T 3poz_A          167 LGAEEKEYHAEGGKVPIKWMALESIL-HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLP  239 (327)
T ss_dssp             HTTTCC-------CCCGGGSCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC
T ss_pred             ccCCcccccccCCCccccccChHHhc-cCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCC
Confidence                            1499999654 5568999999999999999999 999999887777776666544333

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.93  E-value=2.7e-24  Score=174.84  Aligned_cols=149  Identities=23%  Similarity=0.426  Sum_probs=117.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT------  111 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~------  111 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.+++++ +||||+++++++..      
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~   98 (326)
T 2x7f_A           22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM   98 (326)
T ss_dssp             CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CC
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc---ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccc
Confidence            4678999999999999999999999999999999987432   3347788999999999 89999999999976      


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc-----------cccC----
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI-----------KEVG----  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~g----  146 (218)
                      ...+++||||+++ +|.+++......                             +++|.+           .++|    
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~  178 (326)
T 2x7f_A           99 DDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  178 (326)
T ss_dssp             CCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC-
T ss_pred             cceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCcee
Confidence            5689999999988 999988753211                             222221           2222    


Q ss_pred             --------------CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          147 --------------SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       147 --------------~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                                    ..|+|||.+..    ...++.++|||||||++|+|++|+.||......
T Consensus       179 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  240 (326)
T 2x7f_A          179 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM  240 (326)
T ss_dssp             ------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             cCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH
Confidence                          23999996542    455889999999999999999999999876443

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.93  E-value=2.7e-24  Score=172.58  Aligned_cols=160  Identities=25%  Similarity=0.462  Sum_probs=124.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC-------CchHHHHHHHHHHhhCC-CCCeeeeeeeE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE-------GVPSYLIAGVSLLKELE-HDNIVRLLDVL  109 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-------~~~~~~~~e~~~l~~l~-h~~iv~~~~~~  109 (218)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|+++......       ...+.+.+|+.+++++. ||||+++++++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            34688999999999999999999999999999999997543221       22456789999999995 99999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC----
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG----  146 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g----  146 (218)
                      ......++||||+++ +|.+++......                           ++++.+           .++|    
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  173 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ  173 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhh
Confidence            999999999999986 999998764321                           222221           1222    


Q ss_pred             -------------CcccCccccc-----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 -------------SPYKAPESRI-----RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -------------~~y~aPE~~~-----~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                   ..|+|||.+.     ....++.++||||||+++|+|++|+.||...+.......+.
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~  242 (298)
T 1phk_A          174 LDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIM  242 (298)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             cCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHh
Confidence                         2399999654     24457899999999999999999999998775554444443

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.93  E-value=2.7e-25  Score=183.00  Aligned_cols=105  Identities=21%  Similarity=0.345  Sum_probs=85.5

Q ss_pred             cCCChhhhhhhhccceeEEEEeeecCceEEEEEE-----EccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCC
Q 041487           28 KTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCL-----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDN  101 (218)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~-----~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~  101 (218)
                      ..+.......+..++|++.+.||+|+||.||+|.     +..+++.||+|.++.. ......+.+.+|+.++.++ .|||
T Consensus         9 ~~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpn   87 (359)
T 3vhe_A            9 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLN   87 (359)
T ss_dssp             GSCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             hCCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCc-CCHHHHHHHHHHHHHHHhhcCCcc
Confidence            3444456667788999999999999999999998     4456689999999743 2233456789999999999 7899


Q ss_pred             eeeeeeeEEeC-CEEEEEEecCCC-ChHHHhhhc
Q 041487          102 IVRLLDVLTTG-RYVYLVFEYLDL-DLGSFIRKH  133 (218)
Q Consensus       102 iv~~~~~~~~~-~~~~lv~E~~~~-~L~~~~~~~  133 (218)
                      |+++++++... ..+++||||+++ +|.+++...
T Consensus        88 iv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~  121 (359)
T 3vhe_A           88 VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK  121 (359)
T ss_dssp             BCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTT
T ss_pred             eeeeeeeeecCCCceEEEEEecCCCcHHHHHHhc
Confidence            99999998764 459999999988 999988654

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.93  E-value=2.2e-25  Score=182.99  Aligned_cols=149  Identities=32%  Similarity=0.545  Sum_probs=119.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC--CCeeeeeeeEEeCCEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH--DNIVRLLDVLTTGRYV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h--~~iv~~~~~~~~~~~~  115 (218)
                      +....|++.+.||+|+||.||+|.+ .+++.||+|.+..........+.+.+|+.+++.++|  +||+++++++.....+
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~   84 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI   84 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEE
Confidence            4567899999999999999999987 468899999998655454556788999999999976  9999999999999999


Q ss_pred             EEEEecCCCChHHHhhhcccC---------------------------Cccccc----------ccc-------------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI----------KEV-------------  145 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~----------~~~-------------  145 (218)
                      ++|||+..++|.+++......                           +++|.+          .+|             
T Consensus        85 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~~~~~kl~DFG~a~~~~~~~~~~  164 (343)
T 3dbq_A           85 YMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSV  164 (343)
T ss_dssp             EEEECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTEEEECCCSSSCCC-------
T ss_pred             EEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEECCcEEEeecccccccCcccccc
Confidence            999998777999988764332                           333322          122             


Q ss_pred             ------C-CcccCcccccC----------CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ------G-SPYKAPESRIR----------SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ------g-~~y~aPE~~~~----------~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                            | ..|+|||.+..          ...++.++|||||||++|+|++|+.||...
T Consensus       165 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  223 (343)
T 3dbq_A          165 VKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  223 (343)
T ss_dssp             -----CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhh
Confidence                  2 23999996543          255889999999999999999999999865

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.93  E-value=2e-24  Score=174.55  Aligned_cols=152  Identities=28%  Similarity=0.491  Sum_probs=118.1

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      .....++|++.+.||+|+||.||+|.+..++..||+|.+.... ......+.+.+|+.++++++||||+++++++...+.
T Consensus        27 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~  106 (310)
T 2wqm_A           27 GYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNE  106 (310)
T ss_dssp             TTSSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE
T ss_pred             ccccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCc
Confidence            3345678999999999999999999998899999999997543 233446778899999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhccc-----C--------------------------Cccccc-----------cccC-----
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTI-----T--------------------------SIRPHI-----------KEVG-----  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~-----~--------------------------~~~~~~-----------~~~g-----  146 (218)
                      .+++|||+++ +|.+++.....     .                          ++++.+           .++|     
T Consensus       107 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~  186 (310)
T 2wqm_A          107 LNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFF  186 (310)
T ss_dssp             EEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred             EEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence            9999999987 99888764210     0                          222221           2222     


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                   ..|+|||.+ .+..++.++||||||+++|+|++|+.||.+..
T Consensus       187 ~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  240 (310)
T 2wqm_A          187 SSKTTAAHSLVGTPYYMSPERI-HENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  240 (310)
T ss_dssp             ------------CCSSCCHHHH-TTCCCCHHHHHHHHHHHHHHHHHSSCTTC---
T ss_pred             cCCCccccccCCCeeEeChHHh-CCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence                         239999954 45568999999999999999999999998753

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.93  E-value=3.2e-25  Score=180.65  Aligned_cols=162  Identities=28%  Similarity=0.392  Sum_probs=126.1

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEE--EEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeE
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKV--AIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVL  109 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~v--aiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~  109 (218)
                      ...+.+..++|++.+.||+|+||.||+|.++.++..+  ++|.++.. ......+.+.+|+.+++++ +||||+++++++
T Consensus        17 ~~~p~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~   95 (327)
T 1fvr_A           17 TIYPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGAC   95 (327)
T ss_dssp             CCSSBCCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEE
T ss_pred             cccccccHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc-cchHHHHHHHHHHHHHHhccCCCchhhhceee
Confidence            4566678899999999999999999999998888865  99988743 2334456789999999999 899999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhcc-----------------cC--------------------------Cccccc---
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHT-----------------IT--------------------------SIRPHI---  142 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~-----------------~~--------------------------~~~~~~---  142 (218)
                      ...+..++||||+++ +|.+++....                 ..                          +++|.+   
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~  175 (327)
T 1fvr_A           96 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILV  175 (327)
T ss_dssp             EETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             eeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEE
Confidence            999999999999977 9999987643                 00                          333322   


Q ss_pred             --------cccC-----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          143 --------KEVG-----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       143 --------~~~g-----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                              .++|                 ..|+|||.+ .+..++.++|||||||++|+|++ |+.||.+.+...+...+
T Consensus       176 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~  254 (327)
T 1fvr_A          176 GENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL-NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL  254 (327)
T ss_dssp             CGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHH-HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHG
T ss_pred             cCCCeEEEcccCcCccccccccccCCCCCccccChhhh-ccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHh
Confidence                    2222                 239999954 45558999999999999999998 99999887655444433

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.92  E-value=6.2e-25  Score=177.68  Aligned_cols=149  Identities=30%  Similarity=0.597  Sum_probs=115.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--------
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--------  110 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--------  110 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+...  .....+.+.+|+.+++.++||||+++++++.        
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   86 (320)
T 2i6l_A            9 LGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD   86 (320)
T ss_dssp             ETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred             cCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC--ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence            357899999999999999999999999999999998743  2344577889999999999999999999873        


Q ss_pred             ------eCCEEEEEEecCCCChHHHhhhcccC--------------------------Ccccc------------ccccC
Q 041487          111 ------TGRYVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPH------------IKEVG  146 (218)
Q Consensus       111 ------~~~~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~------------~~~~g  146 (218)
                            .....++||||++++|.+++......                          +++|.            +.++|
T Consensus        87 ~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg  166 (320)
T 2i6l_A           87 DVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFG  166 (320)
T ss_dssp             ----CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCT
T ss_pred             ccccccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCc
Confidence                  44789999999999998887653321                          22222            12222


Q ss_pred             ---------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 ---------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 ---------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                                           ..|+|||.+.....++.++|||||||++|+|++|+.||.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  230 (320)
T 2i6l_A          167 LARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHE  230 (320)
T ss_dssp             TCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCH
Confidence                                 2399999776667789999999999999999999999988743

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.92  E-value=1.8e-24  Score=175.82  Aligned_cols=149  Identities=26%  Similarity=0.440  Sum_probs=114.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC------CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE------PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      ...++|.+.+.||+|+||.||+|.+..+++.||+|++.....      .......+.+|+.+++.++||||+++++++..
T Consensus         7 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   86 (322)
T 2ycf_A            7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA   86 (322)
T ss_dssp             HHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred             hhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence            345789999999999999999999999999999999875421      12234568899999999999999999999876


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccC---
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVG---  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g---  146 (218)
                      .. .++||||+++ +|.+++......                           ++++.              +.++|   
T Consensus        87 ~~-~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           87 ED-YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             SS-EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             Cc-eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence            55 8999999987 888877543221                           22222              22333   


Q ss_pred             --------------CcccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------------SPYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------------~~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                    ..|+|||.+.  ....++.++|||||||++|+|++|+.||...
T Consensus       166 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  222 (322)
T 2ycf_A          166 ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH  222 (322)
T ss_dssp             ECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCST
T ss_pred             ecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence                          2399999653  3456889999999999999999999999876

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.92  E-value=6.7e-25  Score=177.51  Aligned_cols=163  Identities=21%  Similarity=0.346  Sum_probs=120.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEcc---CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLE---TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      ...+..++|.+.+.||+|+||.||+|....   ++..||+|.++.........+.+.+|+.++++++||||+++++++..
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  107 (313)
T 3brb_A           28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE  107 (313)
T ss_dssp             TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred             hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence            334567889999999999999999998765   45689999997655455556789999999999999999999999875


Q ss_pred             CC-----EEEEEEecCCC-ChHHHhhhccc------C---------------------------Cccccc----------
Q 041487          112 GR-----YVYLVFEYLDL-DLGSFIRKHTI------T---------------------------SIRPHI----------  142 (218)
Q Consensus       112 ~~-----~~~lv~E~~~~-~L~~~~~~~~~------~---------------------------~~~~~~----------  142 (218)
                      ..     ..+++|||+++ +|.+++.....      .                           +++|.+          
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~k  187 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVC  187 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEE
T ss_pred             ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEE
Confidence            44     35999999987 99988743211      0                           222221          


Q ss_pred             -cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          143 -KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       143 -~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                       .++|                    ..|+|||.+ .+..++.++||||||+++|+|++ |..||.......+...+..
T Consensus       188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~  264 (313)
T 3brb_A          188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL-ADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLH  264 (313)
T ss_dssp             ECSCSCC----------------CCGGGSCHHHH-HSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHT
T ss_pred             EeecCcceecccccccCcccccCCCccccCchhh-cCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHc
Confidence             2222                    139999955 45568999999999999999999 8999998766555554443

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.92  E-value=6.1e-25  Score=179.22  Aligned_cols=141  Identities=29%  Similarity=0.501  Sum_probs=106.6

Q ss_pred             cceeEE---EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEE
Q 041487           41 WNYKVV---EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        41 ~~~~~~---~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~  116 (218)
                      ++|.+.   +.||+|+||.||+|.++.+++.||+|++...     ....+.+|+.+++.+. ||||+++++++.+....+
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~   82 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTF   82 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEE
Confidence            456664   7899999999999999999999999998642     3467889999999996 999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Ccccc--------------ccccC--------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEVG--------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~g--------  146 (218)
                      +||||+++ +|.+++......                           +++|.              +.++|        
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~  162 (325)
T 3kn6_A           83 LVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD  162 (325)
T ss_dssp             EEECCCCSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-
T ss_pred             EEEEccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCC
Confidence            99999987 999888764321                           23332              22232        


Q ss_pred             ----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       163 ~~~~~~~~~t~~y~aPE~~-~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  212 (325)
T 3kn6_A          163 NQPLKTPCFTLHYAAPELL-NQNGYDESCDLWSLGVILYTMLSGQVPFQSH  212 (325)
T ss_dssp             ----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred             CCcccccCCCcCccCHHHh-cCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence                      239999954 5556899999999999999999999999865

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.92  E-value=3e-25  Score=180.83  Aligned_cols=164  Identities=23%  Similarity=0.396  Sum_probs=124.1

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEE-----EccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeee
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCL-----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLD  107 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~-----~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~  107 (218)
                      .....+..++|++.+.||+|+||.||+|.     +..++..||+|.+... ........+.+|+.++++++||||+++++
T Consensus        22 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~  100 (327)
T 2yfx_A           22 SDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRCIG  100 (327)
T ss_dssp             GGSCBCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             hhcccCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc-cchhhHHHHHHHHHHHhhCCCCCCCeEEE
Confidence            55666788999999999999999999998     4467889999998633 23344567889999999999999999999


Q ss_pred             eEEeCCEEEEEEecCCC-ChHHHhhhcccC----------------------------------Cccccc----------
Q 041487          108 VLTTGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPHI----------  142 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~~----------  142 (218)
                      ++......++||||+++ +|.+++......                                  +++|.+          
T Consensus       101 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~  180 (327)
T 2yfx_A          101 VSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGR  180 (327)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTC
T ss_pred             EEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcc
Confidence            99999999999999976 999998764310                                  222221          


Q ss_pred             ----ccc--------------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          143 ----KEV--------------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       143 ----~~~--------------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                          .++                    ...|+|||.+. +..++.++|||||||++|+|+| |+.||.......+...+.
T Consensus       181 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~  259 (327)
T 2yfx_A          181 VAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFM-EGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT  259 (327)
T ss_dssp             CEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHH
T ss_pred             eEEECccccccccccccccccCCCcCCCcceeCHhHhc-CCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHh
Confidence                111                    12399999554 4558999999999999999999 999998876555555444


Q ss_pred             H
Q 041487          198 Y  198 (218)
Q Consensus       198 ~  198 (218)
                      .
T Consensus       260 ~  260 (327)
T 2yfx_A          260 S  260 (327)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.92  E-value=1e-24  Score=181.53  Aligned_cols=161  Identities=31%  Similarity=0.499  Sum_probs=123.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CC-----CeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HD-----NIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~-----~iv~~~~~~~~  111 (218)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|+++..   ......+.+|+.+++.+. |+     +++++++++..
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~  127 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK---KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF  127 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc---HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence            3467899999999999999999999999999999998632   223456777888888774 44     49999999999


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC-------------------------------Ccccc-------------ccccCC
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT-------------------------------SIRPH-------------IKEVGS  147 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~-------------------------------~~~~~-------------~~~~g~  147 (218)
                      ....++||||++++|.+++......                               +++|.             +.++|.
T Consensus       128 ~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~  207 (382)
T 2vx3_A          128 RNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGS  207 (382)
T ss_dssp             TTEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             CCceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence            9999999999999999887654211                               22222             223332


Q ss_pred             ---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          148 ---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       148 ---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                                     .|+|||.+ .+..++.++|||||||++|+|++|+.||.+. ..+.+..+.+..+.+
T Consensus       208 a~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~  277 (382)
T 2vx3_A          208 SCQLGQRIYQYIQSRFYRSPEVL-LGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIP  277 (382)
T ss_dssp             CEETTCCCCSSCSCGGGCCHHHH-TTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSC
T ss_pred             ceecccccccccCCccccChHHH-cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence                           29999955 4556899999999999999999999999987 445555555554444

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=6.9e-25  Score=179.38  Aligned_cols=160  Identities=22%  Similarity=0.390  Sum_probs=123.6

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCC----cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETG----KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~----~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      .++...+|++.+.||+|+||.||+|..+.++    ..||+|.++... .......+.+|+.+++.++||||+++++++..
T Consensus        39 ~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  117 (333)
T 1mqb_A           39 TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK  117 (333)
T ss_dssp             CBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             ccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec
Confidence            4567789999999999999999999876543    469999987432 23345678899999999999999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC-----
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-----  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-----  146 (218)
                      .+..++||||+++ +|.+++......                            ++++.+           .++|     
T Consensus       118 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~  197 (333)
T 1mqb_A          118 YKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  197 (333)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             CCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence            9999999999988 999988654211                            233322           2222     


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                      ..|+|||.+ .+..++.++|||||||++|+|++ |+.||.......+...+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~  264 (333)
T 1mqb_A          198 EDDPEATYTTSGGKIPIRWTAPEAI-SYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAIN  264 (333)
T ss_dssp             -------------CCCGGGSCHHHH-HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHH
T ss_pred             ccccccccccCCCCccccccCchhc-ccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHH
Confidence                            139999955 45558999999999999999999 999998775555444444

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.92  E-value=1.4e-24  Score=173.53  Aligned_cols=157  Identities=21%  Similarity=0.324  Sum_probs=121.7

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCc-----hHHHHHHHHHHhhCCCCCeeeeeee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV-----PSYLIAGVSLLKELEHDNIVRLLDV  108 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~-----~~~~~~e~~~l~~l~h~~iv~~~~~  108 (218)
                      ..+.+..++|++.+.||+|+||.||+|.+..+++.||+|.+.........     .+.+.+|+.++++++||||++++++
T Consensus        12 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   91 (287)
T 4f0f_A           12 RLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGL   91 (287)
T ss_dssp             CCCBCCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             hhhhhhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhhee
Confidence            34557788999999999999999999999999999999998754433322     2788999999999999999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhcccC------------------------------Cccc----------------c
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTIT------------------------------SIRP----------------H  141 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~~------------------------------~~~~----------------~  141 (218)
                      +....  ++||||+++ +|.+++......                              +++|                .
T Consensus        92 ~~~~~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~k  169 (287)
T 4f0f_A           92 MHNPP--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAK  169 (287)
T ss_dssp             ETTTT--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEE
T ss_pred             ecCCC--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEE
Confidence            97665  699999985 887776443211                              2222                2


Q ss_pred             ccccCC---------------cccCccccc-CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          142 IKEVGS---------------PYKAPESRI-RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       142 ~~~~g~---------------~y~aPE~~~-~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                      +.++|.               .|+|||.+. ....++.++|||||||++|+|++|+.||........
T Consensus       170 l~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~  236 (287)
T 4f0f_A          170 VADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKI  236 (287)
T ss_dssp             ECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHH
T ss_pred             eCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHH
Confidence            223332               399999653 344478899999999999999999999987754444

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.92  E-value=1e-24  Score=182.40  Aligned_cols=159  Identities=28%  Similarity=0.557  Sum_probs=116.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----  112 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----  112 (218)
                      ....+|++.+.||+|+||.||+|.+..++. +|+|.+.....      ...+|+.+++.++||||+++++++...     
T Consensus        37 ~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~  109 (394)
T 4e7w_A           37 QREIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKD  109 (394)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSS
T ss_pred             cccceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCC
Confidence            345679999999999999999999876655 88887753221      123799999999999999999998543     


Q ss_pred             -CEEEEEEecCCCChHHHhhhc----c-c--------------------------CCcccc------------ccccCC-
Q 041487          113 -RYVYLVFEYLDLDLGSFIRKH----T-I--------------------------TSIRPH------------IKEVGS-  147 (218)
Q Consensus       113 -~~~~lv~E~~~~~L~~~~~~~----~-~--------------------------~~~~~~------------~~~~g~-  147 (218)
                       ..+++||||+++++.+.+...    . .                          .+++|.            +.+||. 
T Consensus       110 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a  189 (394)
T 4e7w_A          110 EVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSA  189 (394)
T ss_dssp             CEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             ceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCc
Confidence             348999999988665543321    0 0                          033332            223332 


Q ss_pred             ----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccC
Q 041487          148 ----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALT  203 (218)
Q Consensus       148 ----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~  203 (218)
                                      .|+|||.+.....++.++|||||||++|+|++|+.||.+. ..+.+..+++.++.++
T Consensus       190 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~  262 (394)
T 4e7w_A          190 KILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPS  262 (394)
T ss_dssp             EECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCC
T ss_pred             ccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence                            2999997666666999999999999999999999999987 4456666666655443

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.92  E-value=5.3e-25  Score=184.58  Aligned_cols=160  Identities=33%  Similarity=0.635  Sum_probs=116.8

Q ss_pred             ccceeE-EEEeeecCceEEEEEEEc--cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCCE
Q 041487           40 DWNYKV-VEKIGQGVFGEVYKCLNL--ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGRY  114 (218)
Q Consensus        40 ~~~~~~-~~~ig~G~~g~v~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~  114 (218)
                      .+.|.+ .+.||+|+||.||+|.++  .++..||+|.+...    .....+.+|+.+++.++||||+++++++.  ....
T Consensus        19 ~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   94 (405)
T 3rgf_A           19 EDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT----GISMSACREIALLRELKHPNVISLQKVFLSHADRK   94 (405)
T ss_dssp             HHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS----SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred             hhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC----CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence            345776 457999999999999976  46889999998633    23356889999999999999999999995  4778


Q ss_pred             EEEEEecCCCChHHHhhhcc----------c--------------------------CCcccc---------------cc
Q 041487          115 VYLVFEYLDLDLGSFIRKHT----------I--------------------------TSIRPH---------------IK  143 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~----------~--------------------------~~~~~~---------------~~  143 (218)
                      +++||||++++|.+++....          .                          .+++|.               +.
T Consensus        95 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~  174 (405)
T 3rgf_A           95 VWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIA  174 (405)
T ss_dssp             EEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEEC
T ss_pred             EEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEE
Confidence            99999999988887765321          0                          022322               22


Q ss_pred             ccCC---------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc----------chH
Q 041487          144 EVGS---------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK----------DHL  192 (218)
Q Consensus       144 ~~g~---------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~----------~~~  192 (218)
                      ++|.                     .|+|||.+.....++.++|||||||++|+|++|++||.+...          +.+
T Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l  254 (405)
T 3rgf_A          175 DMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQL  254 (405)
T ss_dssp             CTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHH
T ss_pred             ECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHH
Confidence            2321                     299999766656689999999999999999999999986632          566


Q ss_pred             HHHHHHhcccC
Q 041487          193 SLIVRYFTALT  203 (218)
Q Consensus       193 ~~~~~~~~~~~  203 (218)
                      ..+...++.++
T Consensus       255 ~~i~~~~g~p~  265 (405)
T 3rgf_A          255 DRIFNVMGFPA  265 (405)
T ss_dssp             HHHHHHHCCCC
T ss_pred             HHHHHhhCCCC
Confidence            66666666554

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.92  E-value=2.7e-25  Score=178.44  Aligned_cols=149  Identities=28%  Similarity=0.460  Sum_probs=117.7

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEE----EccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCL----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      .++..++|++.+.||+|+||.||+|.    +..+++.||+|.+...  .....+.+.+|+.++++++||||+++++++..
T Consensus         5 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   82 (295)
T 3ugc_A            5 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYS   82 (295)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECH
T ss_pred             CcCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            45678999999999999999999998    4567899999998632  33445678999999999999999999999854


Q ss_pred             --CCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccCC--
Q 041487          112 --GRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS--  147 (218)
Q Consensus       112 --~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~--  147 (218)
                        ...+++||||+++ +|.+++......                            +++|.+           .++|.  
T Consensus        83 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~  162 (295)
T 3ugc_A           83 AGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTK  162 (295)
T ss_dssp             HHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred             CCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence              4568999999976 999998764321                            333322           22221  


Q ss_pred             -------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          148 -------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       148 -------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                         .|+|||.+ .+..++.++||||||+++|+|+||..||...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~  220 (295)
T 3ugc_A          163 VLPQDKEFFKVKEPGESPIFWYAPESL-TESKFSVASDVWSFGVVLYELFTYIEKSKSP  220 (295)
T ss_dssp             -------------CTTCGGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHHTTCTTCSH
T ss_pred             cccCCcceeeeccCCCCccceeCcHHh-cCCCCChHHHHHHHHHHHHHHHhcccccCCC
Confidence                               29999954 4555899999999999999999999998653

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.5e-24  Score=176.93  Aligned_cols=167  Identities=23%  Similarity=0.400  Sum_probs=127.5

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEE----EEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKV----AIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~v----aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      ..+..++|++.+.||+|+||.||+|.+..++..+    ++|.+... ......+.+.+|+.+++.++||||+++++++..
T Consensus        10 ~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   88 (327)
T 3lzb_A           10 RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLT   88 (327)
T ss_dssp             EECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC-SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES
T ss_pred             cccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc-cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec
Confidence            3466789999999999999999999988777655    66665432 344567889999999999999999999999987


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccCC----
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS----  147 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~----  147 (218)
                      .. .++++|++.+ +|.+++......                            +++|.+           .+||.    
T Consensus        89 ~~-~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~  167 (327)
T 3lzb_A           89 ST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             SS-EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred             CC-ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence            65 6778888876 899888654321                            333332           22222    


Q ss_pred             ----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcc
Q 041487          148 ----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       148 ----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~  205 (218)
                                      .|+|||.+. +..++.++|||||||++|+|++ |+.||.+.....+...+.....++.+
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~  241 (327)
T 3lzb_A          168 GAEEKEYHAEGGKVPIKWMALESIL-HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQP  241 (327)
T ss_dssp             ------------CCCGGGSCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCC
T ss_pred             cCccccccccCCCccccccCHHHHc-CCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCC
Confidence                            399999554 5568999999999999999999 99999988777777766654444333

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.92  E-value=3.9e-25  Score=176.14  Aligned_cols=148  Identities=23%  Similarity=0.292  Sum_probs=121.3

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.++...........+.+|+..+..+ +||||+++++++...+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            35789999999999999999999999999999999986655555667888999999999 99999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhccc-----C--------------------------Ccccc------------------------
Q 041487          118 VFEYLDL-DLGSFIRKHTI-----T--------------------------SIRPH------------------------  141 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~-----~--------------------------~~~~~------------------------  141 (218)
                      ||||+++ +|.+++.....     .                          +++|.                        
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~  168 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWAS  168 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-------------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccC
Confidence            9999987 99999875411     1                          23322                        


Q ss_pred             ------ccccC--------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          142 ------IKEVG--------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       142 ------~~~~g--------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                            +.++|              ..|+|||.+.....++.++|||||||++|+|++|.+|+..
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  233 (289)
T 1x8b_A          169 NKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRN  233 (289)
T ss_dssp             -CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred             CceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcc
Confidence                  22222              2399999766555677899999999999999999887754

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.92  E-value=2e-24  Score=175.02  Aligned_cols=147  Identities=23%  Similarity=0.325  Sum_probs=114.4

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|++.+.||+|+||.||+|.++.+++.||+|.+...............|+..+.++ +||||+++++++...+.++
T Consensus        54 ~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~  133 (311)
T 3p1a_A           54 FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILY  133 (311)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             hhhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEE
Confidence            445789999999999999999999999999999999865443333344555566555555 9999999999999999999


Q ss_pred             EEEecCCCChHHHhhhcccC----------------------------Cccccc-----------cccC-----------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-----------  146 (218)
                      +||||++++|.+++......                            +++|.+           .+||           
T Consensus       134 lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~  213 (311)
T 3p1a_A          134 LQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAG  213 (311)
T ss_dssp             EEEECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC-----
T ss_pred             EEEeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCCC
Confidence            99999998998887654321                            333322           2333           


Q ss_pred             ------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 ------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 ------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                            ..|+|||.+. + .++.++|||||||++|+|++|..|+..
T Consensus       214 ~~~~gt~~y~aPE~~~-~-~~~~~~DiwslG~il~el~~g~~~~~~  257 (311)
T 3p1a_A          214 EVQEGDPRYMAPELLQ-G-SYGTAADVFSLGLTILEVACNMELPHG  257 (311)
T ss_dssp             -CCCCCGGGCCGGGGG-T-CCSTHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred             cccCCCccccCHhHhc-C-CCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                  2399999654 4 589999999999999999999766654

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.92  E-value=8.9e-25  Score=173.16  Aligned_cols=154  Identities=25%  Similarity=0.385  Sum_probs=115.4

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC--CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP--EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ++..++|++.+.||+|+||.||+|.+  .+..+|+|+++.....  ....+.+.+|+.+++.++||||+++++++...+.
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (271)
T 3dtc_A            3 EIDFAELTLEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPN   80 (271)
T ss_dssp             BCCTTSEEEEEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--
T ss_pred             ccchhheeeeeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            35678999999999999999999987  5889999998754322  3446789999999999999999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhccc-----------------------------CCccccc-------------------ccc
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTI-----------------------------TSIRPHI-------------------KEV  145 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~-----------------------------~~~~~~~-------------------~~~  145 (218)
                      .++||||+++ +|.+++.....                             .+++|.+                   .++
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df  160 (271)
T 3dtc_A           81 LCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF  160 (271)
T ss_dssp             CEEEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred             eEEEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence            9999999976 77777643221                             1222221                   222


Q ss_pred             CC----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          146 GS----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       146 g~----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                      |.                .|+|||.+ .+..++.++||||||+++|+|++|+.||...+.....
T Consensus       161 g~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~  223 (271)
T 3dtc_A          161 GLAREWHRTTKMSAAGAYAWMAPEVI-RASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVA  223 (271)
T ss_dssp             CC-------------CCGGGSCHHHH-HHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHH
T ss_pred             CcccccccccccCCCCccceeCHHHh-ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence            22                38999954 4556899999999999999999999999876544433

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.92  E-value=5e-24  Score=178.55  Aligned_cols=142  Identities=30%  Similarity=0.451  Sum_probs=112.1

Q ss_pred             hccceeEE-EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhh-CCCCCeeeeeeeEEe----C
Q 041487           39 KDWNYKVV-EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE-LEHDNIVRLLDVLTT----G  112 (218)
Q Consensus        39 ~~~~~~~~-~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~----~  112 (218)
                      ..++|.+. +.||+|+||.||+|.++.+++.||+|++..       ...+.+|+.++.+ .+||||+++++++..    .
T Consensus        59 ~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~  131 (400)
T 1nxk_A           59 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR  131 (400)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCC
Confidence            45678877 789999999999999999999999999862       2457788888754 489999999999875    6


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc---C--------------------------Ccccc--------------ccccCC-
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPH--------------IKEVGS-  147 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~--------------~~~~g~-  147 (218)
                      ..+|+||||+++ +|.+++.....   .                          ++++.              +.+||. 
T Consensus       132 ~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a  211 (400)
T 1nxk_A          132 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  211 (400)
T ss_dssp             EEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             cEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccc
Confidence            679999999987 99998876432   1                          22222              223332 


Q ss_pred             ----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          148 ----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       148 ----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                      .|+|||. ..+..++.++|||||||++|+|++|+.||....
T Consensus       212 ~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  267 (400)
T 1nxk_A          212 KETTSHNSLTTPCYTPYYVAPEV-LGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  267 (400)
T ss_dssp             EECC-----------CTTCCGGG-SCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCT
T ss_pred             cccCCCCccccCCCCCCccCHhh-cCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence                            2999995 455668999999999999999999999998763

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.92  E-value=7.9e-25  Score=189.78  Aligned_cols=158  Identities=25%  Similarity=0.477  Sum_probs=123.1

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ....+..++|++.+.||+|+||.||+|.+.. +..||||+++...   ...+.+.+|+.+++.++|+||+++++++.. .
T Consensus       260 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~  334 (535)
T 2h8h_A          260 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGT---MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E  334 (535)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             cceecchhhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCC---CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-c
Confidence            3455778899999999999999999999753 5679999987432   235789999999999999999999999866 6


Q ss_pred             EEEEEEecCCC-ChHHHhhhcc---cC--------------------------Ccccc-----------ccccC------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHT---IT--------------------------SIRPH-----------IKEVG------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~---~~--------------------------~~~~~-----------~~~~g------  146 (218)
                      .+++||||+.+ +|.+++....   ..                          ++++.           +.+||      
T Consensus       335 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  414 (535)
T 2h8h_A          335 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  414 (535)
T ss_dssp             SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCC
T ss_pred             cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecC
Confidence            68999999987 9999987531   11                          22222           22232      


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                   ..|+|||.+. +..++.++|||||||++|+|++ |+.||.+.....+...+.
T Consensus       415 ~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~  478 (535)
T 2h8h_A          415 DNEYTARQGAKFPIKWTAPEAAL-YGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVE  478 (535)
T ss_dssp             CHHHHTTCSTTSCGGGSCHHHHH-HCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHH
T ss_pred             CCceecccCCcCcccccCHHHhc-cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence                         2399999654 4558999999999999999999 999999875555444444

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.92  E-value=6.9e-25  Score=179.25  Aligned_cols=164  Identities=24%  Similarity=0.417  Sum_probs=126.3

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEc-------cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNL-------ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRL  105 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-------~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~  105 (218)
                      ....+..++|++.+.||+|+||.||+|.+.       .++..||+|+++... .....+.+.+|+.+++++ +||||+++
T Consensus        28 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~  106 (334)
T 2pvf_A           28 PKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA-TEKDLSDLVSEMEMMKMIGKHKNIINL  106 (334)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC-cHHHHHHHHHHHHHHHHhhcCCCEeeE
Confidence            334567789999999999999999999975       356789999987432 333456788999999999 89999999


Q ss_pred             eeeEEeCCEEEEEEecCCC-ChHHHhhhccc-----------------C--------------------------Ccccc
Q 041487          106 LDVLTTGRYVYLVFEYLDL-DLGSFIRKHTI-----------------T--------------------------SIRPH  141 (218)
Q Consensus       106 ~~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~-----------------~--------------------------~~~~~  141 (218)
                      ++++...+..++||||+++ +|.+++.....                 .                          ++++.
T Consensus       107 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~  186 (334)
T 2pvf_A          107 LGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAAR  186 (334)
T ss_dssp             EEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGG
T ss_pred             EEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccc
Confidence            9999999999999999987 99999875431                 0                          22222


Q ss_pred             c-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCc
Q 041487          142 I-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKK  189 (218)
Q Consensus       142 ~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~  189 (218)
                      +           .++|                    ..|+|||.+. +..++.++|||||||++|+|++ |+.||.+...
T Consensus       187 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  265 (334)
T 2pvf_A          187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF-DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV  265 (334)
T ss_dssp             GEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHH-HCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             eEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhc-CCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH
Confidence            1           2222                    2399999654 4558999999999999999999 9999998766


Q ss_pred             chHHHHHHHh
Q 041487          190 DHLSLIVRYF  199 (218)
Q Consensus       190 ~~~~~~~~~~  199 (218)
                      ..+...+...
T Consensus       266 ~~~~~~~~~~  275 (334)
T 2pvf_A          266 EELFKLLKEG  275 (334)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            6665555543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.92  E-value=4.6e-25  Score=180.71  Aligned_cols=150  Identities=25%  Similarity=0.409  Sum_probs=120.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC------CchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE------GVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~------~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      -..++|++.+.||+|+||.||+|.++.++..||+|+++......      ...+.+.+|+.++++++||||+++++++..
T Consensus        21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~  100 (335)
T 3dls_A           21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN  100 (335)
T ss_dssp             HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence            34678999999999999999999999999999999998654322      134567889999999999999999999999


Q ss_pred             CCEEEEEEecCCC--ChHHHhhhcccC---------------------------Cccccc-----------cccC-----
Q 041487          112 GRYVYLVFEYLDL--DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-----  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~--~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-----  146 (218)
                      .+..++||||+..  +|.+++......                           +++|.+           .++|     
T Consensus       101 ~~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~  180 (335)
T 3dls_A          101 QGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYL  180 (335)
T ss_dssp             SSEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CCEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceEC
Confidence            9999999998854  788887654321                           333322           2222     


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                  ..|+|||.+.....++.++|||||||++|+|++|+.||...
T Consensus       181 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  233 (335)
T 3dls_A          181 ERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCEL  233 (335)
T ss_dssp             CTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSG
T ss_pred             CCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhH
Confidence                        24999996655554588999999999999999999999753

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.92  E-value=9.5e-25  Score=176.33  Aligned_cols=164  Identities=25%  Similarity=0.386  Sum_probs=126.2

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEE-----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeee
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLN-----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLL  106 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~  106 (218)
                      .....+..++|++.+.||+|+||.||+|.+     ..++..||+|.++... .....+.+.+|+.+++++ +||||++++
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~i~~~~   93 (313)
T 1t46_A           15 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHMNIVNLL   93 (313)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch-hHHHHHHHHHHHHHHhhcccCCCeeeEE
Confidence            444557778999999999999999999985     3467899999987432 223457889999999999 999999999


Q ss_pred             eeEEeCCEEEEEEecCCC-ChHHHhhhccc-------------------C--------------------------Cccc
Q 041487          107 DVLTTGRYVYLVFEYLDL-DLGSFIRKHTI-------------------T--------------------------SIRP  140 (218)
Q Consensus       107 ~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~-------------------~--------------------------~~~~  140 (218)
                      +++...+..++||||+++ +|.+++.....                   .                          +++|
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp  173 (313)
T 1t46_A           94 GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAA  173 (313)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCcc
Confidence            999999999999999987 99999876431                   0                          2222


Q ss_pred             cc-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC
Q 041487          141 HI-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK  188 (218)
Q Consensus       141 ~~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~  188 (218)
                      .+           .++|                    ..|+|||.+. +..++.++||||||+++|+|+| |+.||....
T Consensus       174 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  252 (313)
T 1t46_A          174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF-NCVYTFESDVWSYGIFLWELFSLGSSPYPGMP  252 (313)
T ss_dssp             GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhc-CCCCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence            21           1121                    1399999554 4558999999999999999999 999998874


Q ss_pred             c-chHHHHHHH
Q 041487          189 K-DHLSLIVRY  198 (218)
Q Consensus       189 ~-~~~~~~~~~  198 (218)
                      . ......+..
T Consensus       253 ~~~~~~~~~~~  263 (313)
T 1t46_A          253 VDSKFYKMIKE  263 (313)
T ss_dssp             SSHHHHHHHHH
T ss_pred             chhHHHHHhcc
Confidence            3 334444333

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=7.6e-25  Score=179.42  Aligned_cols=153  Identities=27%  Similarity=0.460  Sum_probs=119.5

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeee
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDV  108 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~  108 (218)
                      ...+..++|++.+.||+|+||.||+|.+.     .++..||+|.++... .....+.+.+|+.+++++ +||||++++++
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  117 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGA  117 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc-CHHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            34567789999999999999999999973     356789999997432 334457899999999999 89999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhccc------------------------C--------------------------C
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTI------------------------T--------------------------S  137 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~------------------------~--------------------------~  137 (218)
                      +...+..++||||+++ +|.+++.....                        .                          +
T Consensus       118 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~D  197 (344)
T 1rjb_A          118 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRD  197 (344)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             EeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            9999999999999987 99999865421                        0                          2


Q ss_pred             ccccc-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCC
Q 041487          138 IRPHI-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFP  185 (218)
Q Consensus       138 ~~~~~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~  185 (218)
                      ++|.+           .++|                    ..|+|||.+. +..++.++|||||||++|+|+| |+.||.
T Consensus       198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Di~slG~il~el~t~g~~p~~  276 (344)
T 1rjb_A          198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF-EGIYTIKSDVWSYGILLWEIFSLGVNPYP  276 (344)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhc-cCCCChhHhHHHHHHHHHHHHcCCCCCcc
Confidence            33322           1221                    1399999554 4558999999999999999998 999998


Q ss_pred             CCCc
Q 041487          186 CGKK  189 (218)
Q Consensus       186 ~~~~  189 (218)
                      +...
T Consensus       277 ~~~~  280 (344)
T 1rjb_A          277 GIPV  280 (344)
T ss_dssp             TCCC
T ss_pred             cCCc
Confidence            8743

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=9e-25  Score=174.81  Aligned_cols=159  Identities=22%  Similarity=0.329  Sum_probs=121.7

Q ss_pred             hhhccceeEEE-EeeecCceEEEEEEEc--cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           37 KVKDWNYKVVE-KIGQGVFGEVYKCLNL--ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        37 ~~~~~~~~~~~-~ig~G~~g~v~~~~~~--~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      .+..++|.+.+ .||+|+||.||+|.++  ..+..||+|.++.. ......+.+.+|+.+++.++||||+++++++ ..+
T Consensus         5 ~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~   82 (287)
T 1u59_A            5 FLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAE   82 (287)
T ss_dssp             BCCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESS
T ss_pred             cccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc-cchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCC
Confidence            35678898887 9999999999999864  46788999998753 2334567889999999999999999999999 556


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC-------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-------  146 (218)
                      ..++||||+++ +|.+++......                            +++|.+           .++|       
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~  162 (287)
T 1u59_A           83 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  162 (287)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             CcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence            68999999988 999988543221                            233321           1121       


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                                    ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...+...+...+..
T Consensus       163 ~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~  228 (287)
T 1u59_A          163 DDSYYTARSAGKWPLKWYAPECI-NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ  228 (287)
T ss_dssp             CSCEECCCCSSCCCGGGCCHHHH-HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHT
T ss_pred             CcceeeccccccccccccCHHHh-ccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhc
Confidence                          239999955 44558999999999999999999 9999988765555554443

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.92  E-value=4.4e-24  Score=171.29  Aligned_cols=146  Identities=23%  Similarity=0.284  Sum_probs=119.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  115 (218)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|+++...    ..+.+.+|+.+++.+ .|++++++++++......
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~   81 (298)
T 1csn_A            6 NVVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHN   81 (298)
T ss_dssp             CEETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT----TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEE
T ss_pred             cccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC----ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCcee
Confidence            355788999999999999999999998999999999986432    224478899999999 899999999999999999


Q ss_pred             EEEEecCCCChHHHhhhcccC----------------------------Cccc----------------cccccC-----
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT----------------------------SIRP----------------HIKEVG-----  146 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~----------------~~~~~g-----  146 (218)
                      ++||||+.++|.+++......                            +++|                .+.++|     
T Consensus        82 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~  161 (298)
T 1csn_A           82 VLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY  161 (298)
T ss_dssp             EEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred             EEEEEecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence            999999977999998754321                            2222                122222     


Q ss_pred             --------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                          ..|+|||. ..+..++.++|||||||++|+|++|+.||...
T Consensus       162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  221 (298)
T 1csn_A          162 RDPVTKQHIPYREKKNLSGTARYMSINT-HLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  221 (298)
T ss_dssp             BCTTTCCBCCCCCCCCCCSCTTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ccccccccccccCccCCCCCcccCCchh-hcCCCCChHHHHHHHHHHHHHHHcCCCCcchh
Confidence                                23999995 45566899999999999999999999999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.92  E-value=6.3e-25  Score=178.91  Aligned_cols=162  Identities=25%  Similarity=0.372  Sum_probs=123.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcE----EEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK----VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~----vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .+..++|++.+.||+|+||.||+|.+..++..    ||+|.+... ......+.+.+|+.+++.++||||+++++++. +
T Consensus         9 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~   86 (325)
T 3kex_A            9 IFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDK-SGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-G   86 (325)
T ss_dssp             BCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCT-TSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-B
T ss_pred             hcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEecccc-ccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-C
Confidence            35678899999999999999999998877765    777776533 22333456788999999999999999999886 4


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g------  146 (218)
                      ...++||||+.+ +|.+++......                            +++|.+           .+||      
T Consensus        87 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  166 (325)
T 3kex_A           87 SSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLP  166 (325)
T ss_dssp             SSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred             CccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccC
Confidence            568899999986 998888654211                            333322           2222      


Q ss_pred             -------------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcc
Q 041487          147 -------------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTA  201 (218)
Q Consensus       147 -------------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~  201 (218)
                                   + .|+|||.+ .+..++.++|||||||++|+|+| |+.||.+.....+...+.....
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~  235 (325)
T 3kex_A          167 PDDKQLLYSEAKTPIKWMALESI-HFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGER  235 (325)
T ss_dssp             CCTTCCC-----CCTTTSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCB
T ss_pred             cccccccccCCCCcccccChHHh-ccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCC
Confidence                         1 49999955 44558999999999999999999 9999998876666666655433

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.92  E-value=1.8e-24  Score=175.07  Aligned_cols=147  Identities=30%  Similarity=0.527  Sum_probs=118.2

Q ss_pred             hccceeEE-EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEE
Q 041487           39 KDWNYKVV-EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        39 ~~~~~~~~-~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~  116 (218)
                      ..+.|++. +.||+|+||.||+|.+..+++.||+|++...  .....+.+.+|+.++.++ +||||+++++++...+.++
T Consensus        10 ~~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~   87 (316)
T 2ac3_A           10 FEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ--PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFY   87 (316)
T ss_dssp             TTTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC--SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             cceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC--cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEE
Confidence            35678885 7899999999999999899999999999754  334567899999999985 7999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Ccccc--------------cccc---------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPH--------------IKEV---------  145 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~--------------~~~~---------  145 (218)
                      +||||+++ +|.+++......                           +++|.              +.++         
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  167 (316)
T 2ac3_A           88 LVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN  167 (316)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred             EEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence            99999985 999888654321                           22221              2222         


Q ss_pred             ---------------C-CcccCcccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ---------------G-SPYKAPESRIR----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ---------------g-~~y~aPE~~~~----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                     | ..|+|||.+..    ...++.++|||||||++|+|++|+.||...
T Consensus       168 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  229 (316)
T 2ac3_A          168 GDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGR  229 (316)
T ss_dssp             --------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred             CccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccc
Confidence                           2 23999996543    244789999999999999999999999876

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=190.53  Aligned_cols=162  Identities=22%  Similarity=0.318  Sum_probs=123.0

Q ss_pred             hhccceeEEE-EeeecCceEEEEEEEcc--CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVE-KIGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~-~ig~G~~g~v~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      +..+++.+.+ .||+|+||.||+|..+.  .+..||||+++.. ......+.+.+|+.+++.++||||+++++++.. ..
T Consensus       332 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~-~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~  409 (613)
T 2ozo_A          332 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA  409 (613)
T ss_dssp             CCTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCC-CSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SS
T ss_pred             ccccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCC-CChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CC
Confidence            3445666666 89999999999998763  4567999999754 334457889999999999999999999999976 55


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      +++||||+++ +|.+++......                            ++++.+           .+||        
T Consensus       410 ~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~  489 (613)
T 2ozo_A          410 LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD  489 (613)
T ss_dssp             EEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--
T ss_pred             eEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCC
Confidence            8999999987 899988643221                            333322           2222        


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhccc
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTAL  202 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~  202 (218)
                                   ..|+|||.+ .+..++.++|||||||++|||++ |+.||.+.+...+...+.....+
T Consensus       490 ~~~~~~~~~~~~~~~y~APE~~-~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~  558 (613)
T 2ozo_A          490 DSYYTARSAGKWPLKWYAPECI-NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRM  558 (613)
T ss_dssp             ------------CCTTSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCC
T ss_pred             CceeeeccCCCCccceeCHhhh-cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCC
Confidence                         249999955 45568999999999999999998 99999988666555555543333

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.92  E-value=1.8e-25  Score=179.61  Aligned_cols=159  Identities=21%  Similarity=0.288  Sum_probs=105.3

Q ss_pred             hhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           32 SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        32 ~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      +.....+..++|++.+.||+|+||.||+|.+..++..||+|.+..... ....+.+.+|+.+++.++||||+++++++..
T Consensus         6 ~~~p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   84 (303)
T 2vwi_A            6 SALPWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC-QTSMDELLKEIQAMSQCHHPNIVSYYTSFVV   84 (303)
T ss_dssp             -------CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTBCCEEEEEES
T ss_pred             cccccccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc-chhHHHHHHHHHHHhhcCCCCEeeEEEEEee
Confidence            344556778999999999999999999999888999999999864322 2335678899999999999999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhc--------c-cC--------------------------Cccccc-----------cc
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKH--------T-IT--------------------------SIRPHI-----------KE  144 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~--------~-~~--------------------------~~~~~~-----------~~  144 (218)
                      .+..++||||+++ +|.+++...        . ..                          ++++.+           .+
T Consensus        85 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~d  164 (303)
T 2vwi_A           85 KDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIAD  164 (303)
T ss_dssp             SSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECC
T ss_pred             cCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEe
Confidence            9999999999976 998887631        0 00                          222221           11


Q ss_pred             c----------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch
Q 041487          145 V----------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH  191 (218)
Q Consensus       145 ~----------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~  191 (218)
                      +                      | ..|+|||.+.....++.++|||||||++|+|++|+.||.......
T Consensus       165 fg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  234 (303)
T 2vwi_A          165 FGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK  234 (303)
T ss_dssp             CHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG
T ss_pred             ccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh
Confidence            1                      2 239999976554568999999999999999999999998764443

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.92  E-value=8.3e-26  Score=187.80  Aligned_cols=148  Identities=15%  Similarity=0.235  Sum_probs=112.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHH---HHHhhCCCCCeeeee-------ee
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGV---SLLKELEHDNIVRLL-------DV  108 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~---~~l~~l~h~~iv~~~-------~~  108 (218)
                      .++|++.+.||+|+||.||+|.++.+++.||||++.... ......+.+.+|+   ..++.++||||++++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            477999999999999999999998899999999998653 3445678899999   455566899999998       66


Q ss_pred             EEeCC-----------------EEEEEEecCCCChHHHhhhcccC----------------------------------C
Q 041487          109 LTTGR-----------------YVYLVFEYLDLDLGSFIRKHTIT----------------------------------S  137 (218)
Q Consensus       109 ~~~~~-----------------~~~lv~E~~~~~L~~~~~~~~~~----------------------------------~  137 (218)
                      +...+                 ..|++|||++++|.+++......                                  +
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrD  231 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  231 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            55443                 38999999988999988753210                                  3


Q ss_pred             ccccc-----------cc--------------cCCcccCcccccCC----------CCCCCcchHHHHHHHHHHHHhCCC
Q 041487          138 IRPHI-----------KE--------------VGSPYKAPESRIRS----------SVYSTPHDVWAVGCIFAEMVSGKP  182 (218)
Q Consensus       138 ~~~~~-----------~~--------------~g~~y~aPE~~~~~----------~~~~~~~DiwSlG~~l~~l~tg~~  182 (218)
                      ++|.+           .+              .|..|+|||.+...          ..++.++|||||||++|+|++|+.
T Consensus       232 ikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~  311 (377)
T 3byv_A          232 LRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADL  311 (377)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCC
Confidence            33332           12              23559999965544          258999999999999999999999


Q ss_pred             CCCCC
Q 041487          183 LFPCG  187 (218)
Q Consensus       183 Pf~~~  187 (218)
                      ||...
T Consensus       312 Pf~~~  316 (377)
T 3byv_A          312 PITKD  316 (377)
T ss_dssp             CC---
T ss_pred             CCccc
Confidence            99765

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.92  E-value=7.8e-25  Score=177.71  Aligned_cols=163  Identities=25%  Similarity=0.417  Sum_probs=125.9

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDV  108 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~  108 (218)
                      ....+..++|++.+.||+|+||.||+|.++     .++..||+|.+.... .......+.+|+.+++.++||||++++++
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   96 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA-SMRERIEFLNEASVMKEFNCHHVVRLLGV   96 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS-CHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence            344567789999999999999999999876     357889999986432 22335578899999999999999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhccc-----------C--------------------------Cccccc--------
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTI-----------T--------------------------SIRPHI--------  142 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~-----------~--------------------------~~~~~~--------  142 (218)
                      +......++||||+++ +|.+++.....           .                          +++|.+        
T Consensus        97 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~  176 (322)
T 1p4o_A           97 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFT  176 (322)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCC
T ss_pred             EccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCe
Confidence            9999999999999986 99998865320           0                          222221        


Q ss_pred             ---cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHH
Q 041487          143 ---KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       143 ---~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~  198 (218)
                         .++|                    ..|+|||.+ .+..++.++|||||||++|+|++ |+.||.+.+...+...+..
T Consensus       177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~  255 (322)
T 1p4o_A          177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL-KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME  255 (322)
T ss_dssp             EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHT
T ss_pred             EEECcCccccccccccccccccCCCCCCCccChhhh-ccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHc
Confidence               2222                    239999954 45558999999999999999999 8999988765555554443

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.92  E-value=2.6e-24  Score=174.91  Aligned_cols=144  Identities=24%  Similarity=0.399  Sum_probs=113.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC------
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR------  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------  113 (218)
                      .++|++.+.||+|+||.||+|+++.+++.||+|+++... .....+.+.+|+.++++++||||+++++++....      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   83 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE   83 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS-TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC-chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence            467999999999999999999999999999999997543 3445678999999999999999999999985433      


Q ss_pred             ---------------------------------------------------EEEEEEecCCC-ChHHHhhhcccC-----
Q 041487          114 ---------------------------------------------------YVYLVFEYLDL-DLGSFIRKHTIT-----  136 (218)
Q Consensus       114 ---------------------------------------------------~~~lv~E~~~~-~L~~~~~~~~~~-----  136 (218)
                                                                         ..+++|||+++ +|.+++......     
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  163 (332)
T 3qd2_B           84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH  163 (332)
T ss_dssp             HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred             hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence                                                               48999999988 999887653221     


Q ss_pred             -------------------------Cccccc-----------ccc-----------------------------C-Cccc
Q 041487          137 -------------------------SIRPHI-----------KEV-----------------------------G-SPYK  150 (218)
Q Consensus       137 -------------------------~~~~~~-----------~~~-----------------------------g-~~y~  150 (218)
                                               +++|.+           .++                             | ..|+
T Consensus       164 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  243 (332)
T 3qd2_B          164 GVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYM  243 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCcc
Confidence                                     223221           112                             2 2399


Q ss_pred             CcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          151 APESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       151 aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                      |||.+ .+..++.++|||||||++|+|++|..|+.
T Consensus       244 aPE~~-~~~~~~~~~Di~slG~il~el~~~~~~~~  277 (332)
T 3qd2_B          244 SPEQI-HGNNYSHKVDIFSLGLILFELLYSFSTQM  277 (332)
T ss_dssp             CHHHH-HCCCCCTHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             ChHHh-cCCCCcchhhHHHHHHHHHHHHHcCCChh
Confidence            99954 45568999999999999999999877653

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.92  E-value=1.6e-24  Score=173.74  Aligned_cols=143  Identities=15%  Similarity=0.181  Sum_probs=115.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|++...... ....+.+.+|+.++..++||||+++++++...+..|
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~  107 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGL  107 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEE
Confidence            4567899999999999999999999889999999999755432 234578899999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC-------------------------CccccccccC--------C-cccCcccccCCCCC
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT-------------------------SIRPHIKEVG--------S-PYKAPESRIRSSVY  161 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~-------------------------~~~~~~~~~g--------~-~y~aPE~~~~~~~~  161 (218)
                      +||||+++ +|.+++......                         ++++.+..++        . .|++        .+
T Consensus       108 lv~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~~~--------~~  179 (286)
T 3uqc_A          108 VVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMP--------DA  179 (286)
T ss_dssp             EEEECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCCCT--------TC
T ss_pred             EEEEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccccC--------CC
Confidence            99999986 999988543211                         4444432211        1 1222        37


Q ss_pred             CCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          162 STPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       162 ~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                      +.++|||||||++|+|+||+.||.+.+
T Consensus       180 ~~~~Di~slG~il~elltg~~Pf~~~~  206 (286)
T 3uqc_A          180 NPQDDIRGIGASLYALLVNRWPLPEAG  206 (286)
T ss_dssp             CHHHHHHHHHHHHHHHHHSEECSCCCS
T ss_pred             CchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence            889999999999999999999998763

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.92  E-value=9.5e-25  Score=177.82  Aligned_cols=152  Identities=23%  Similarity=0.382  Sum_probs=109.7

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEE--
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLT--  110 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~--  110 (218)
                      +...+...+|++.+.||+|+||.||+|.+..+++.||+|.+...  .....+.+.+|+.+++++. ||||+++++++.  
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~   98 (337)
T 3ll6_A           21 QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN--EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIG   98 (337)
T ss_dssp             CEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEEC
T ss_pred             ceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC--chHHHHHHHHHHHHHHHhccCCChhhcccccccc
Confidence            34445667899999999999999999999999999999998643  2334567889999999995 999999999983  


Q ss_pred             ------eCCEEEEEEecCCCChHHHhhhccc---C-----------------------------Ccccc-----------
Q 041487          111 ------TGRYVYLVFEYLDLDLGSFIRKHTI---T-----------------------------SIRPH-----------  141 (218)
Q Consensus       111 ------~~~~~~lv~E~~~~~L~~~~~~~~~---~-----------------------------~~~~~-----------  141 (218)
                            ....++++|||++++|.+++.....   .                             +++|.           
T Consensus        99 ~~~~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~k  178 (337)
T 3ll6_A           99 KEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIK  178 (337)
T ss_dssp             TTTSTTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEE
T ss_pred             ccccccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEE
Confidence                  4556999999999998888754111   0                             22222           


Q ss_pred             ccccC------------------------------CcccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          142 IKEVG------------------------------SPYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       142 ~~~~g------------------------------~~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      +.++|                              ..|+|||.+.  .+..++.++|||||||++|+|++|+.||...
T Consensus       179 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  256 (337)
T 3ll6_A          179 LCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDG  256 (337)
T ss_dssp             BCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             EecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcch
Confidence            12222                              1299999653  4555888999999999999999999999865

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.92  E-value=1.5e-24  Score=172.59  Aligned_cols=157  Identities=28%  Similarity=0.512  Sum_probs=120.5

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ....+..++|++.+.||+|+||.||+|.+. .+..||+|.+....   ...+.+.+|+.+++.++||||+++++++. .+
T Consensus         6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~   80 (279)
T 1qpc_A            6 DEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS---MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QE   80 (279)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SS
T ss_pred             hhcccCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCc---ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CC
Confidence            345567789999999999999999999864 56789999986432   33578999999999999999999999986 44


Q ss_pred             EEEEEEecCCC-ChHHHhhhcc---cC--------------------------Cccccc-----------cccC------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHT---IT--------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~---~~--------------------------~~~~~~-----------~~~g------  146 (218)
                      ..++||||+++ +|.+++....   ..                          ++++.+           .++|      
T Consensus        81 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  160 (279)
T 1qpc_A           81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (279)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             CcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCccccccc
Confidence            58999999976 9999886532   11                          222221           1221      


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                                   ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...+...+...+
T Consensus       161 ~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~  223 (279)
T 1qpc_A          161 DNEYTAREGAKFPIKWTAPEAI-NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNL  223 (279)
T ss_dssp             SSCEECCTTCCCCTTTSCHHHH-HHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHH
T ss_pred             CcccccccCCCCccCccChhhh-ccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Confidence                         239999955 44558899999999999999999 99999887554444433

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=1.9e-24  Score=178.35  Aligned_cols=151  Identities=20%  Similarity=0.344  Sum_probs=117.5

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCC--CCCchHHHHHHHHHHhhC-CCCCeeeeeeeEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNE--PEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLT  110 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~  110 (218)
                      .+..++|++.+.||+|+||.||+|.+.   .+++.||+|+++....  .....+.+.+|+.+++.+ .||||+++++++.
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  129 (355)
T 1vzo_A           50 KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ  129 (355)
T ss_dssp             CCCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE
T ss_pred             cccccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe
Confidence            345689999999999999999999984   4789999999865321  223456677899999999 7999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc------
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV------  145 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~------  145 (218)
                      .....++||||+++ +|.+++......                           +++|.+           .++      
T Consensus       130 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          130 TETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             ETTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eCceEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence            99999999999987 998888654321                           233322           122      


Q ss_pred             -------------CCcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -------------GSPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -------------g~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                   ...|+|||.+... ..++.++|||||||++|+|++|+.||...
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  265 (355)
T 1vzo_A          210 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVD  265 (355)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCT
T ss_pred             ccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccC
Confidence                         2239999966543 34788999999999999999999999765

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.92  E-value=2.3e-24  Score=179.35  Aligned_cols=163  Identities=30%  Similarity=0.555  Sum_probs=123.4

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC--------CCCeeeeeee
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE--------HDNIVRLLDV  108 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~--------h~~iv~~~~~  108 (218)
                      .+..++|++.+.||+|+||.||+|.+..+++.||+|+++..   ....+.+.+|+.+++.+.        |+||++++++
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~  109 (397)
T 1wak_A           33 DLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA---EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDD  109 (397)
T ss_dssp             CEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEE
T ss_pred             hhcCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC---CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecc
Confidence            34568899999999999999999999999999999998632   234567889999999885        7889999999


Q ss_pred             EE----eCCEEEEEEecCCCChHHHhhhcccC------------------------------Ccccc-------------
Q 041487          109 LT----TGRYVYLVFEYLDLDLGSFIRKHTIT------------------------------SIRPH-------------  141 (218)
Q Consensus       109 ~~----~~~~~~lv~E~~~~~L~~~~~~~~~~------------------------------~~~~~-------------  141 (218)
                      +.    ....+++||||+.+++.+++......                              +++|.             
T Consensus       110 ~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~  189 (397)
T 1wak_A          110 FKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRR  189 (397)
T ss_dssp             EEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHH
T ss_pred             eeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhh
Confidence            87    55689999999988887776543210                              22221             


Q ss_pred             -----------------------------------------------ccccC---------------CcccCcccccCCC
Q 041487          142 -----------------------------------------------IKEVG---------------SPYKAPESRIRSS  159 (218)
Q Consensus       142 -----------------------------------------------~~~~g---------------~~y~aPE~~~~~~  159 (218)
                                                                     +.++|               ..|+|||.+. +.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~-~~  268 (397)
T 1wak_A          190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLI-GS  268 (397)
T ss_dssp             HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHH-TS
T ss_pred             hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhc-CC
Confidence                                                           22222               2399999654 45


Q ss_pred             CCCCcchHHHHHHHHHHHHhCCCCCCCCC-------cchHHHHHHHhcccC
Q 041487          160 VYSTPHDVWAVGCIFAEMVSGKPLFPCGK-------KDHLSLIVRYFTALT  203 (218)
Q Consensus       160 ~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-------~~~~~~~~~~~~~~~  203 (218)
                      .++.++|||||||++|+|++|+.||....       .+.+..+.+.++.++
T Consensus       269 ~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p  319 (397)
T 1wak_A          269 GYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVP  319 (397)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCC
T ss_pred             CCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCC
Confidence            58999999999999999999999998653       234455555555543

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.92  E-value=9.9e-25  Score=176.73  Aligned_cols=152  Identities=23%  Similarity=0.383  Sum_probs=118.1

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--  110 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--  110 (218)
                      .....+..++|++.+.||+|+||.||+|.+..+++.||+|.+...  .....+.+.+|+.+++.++||||+++++++.  
T Consensus        21 g~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   98 (317)
T 2buj_A           21 GHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH--EQQDREEAQREADMHRLFNHPNILRLVAYCLRE   98 (317)
T ss_dssp             EEEEEETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE
T ss_pred             ccEEEECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC--CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec
Confidence            344556778999999999999999999999999999999998653  3344678899999999999999999999986  


Q ss_pred             --eCCEEEEEEecCCC-ChHHHhhhcc----cC---------------------------Cccccc-----------ccc
Q 041487          111 --TGRYVYLVFEYLDL-DLGSFIRKHT----IT---------------------------SIRPHI-----------KEV  145 (218)
Q Consensus       111 --~~~~~~lv~E~~~~-~L~~~~~~~~----~~---------------------------~~~~~~-----------~~~  145 (218)
                        .....++||||+.+ +|.+++....    ..                           +++|.+           .++
T Consensus        99 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~df  178 (317)
T 2buj_A           99 RGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDL  178 (317)
T ss_dssp             ETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             cCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEec
Confidence              34579999999988 9998887521    10                           333322           223


Q ss_pred             C---------------------------CcccCcccccCCC--CCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          146 G---------------------------SPYKAPESRIRSS--VYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       146 g---------------------------~~y~aPE~~~~~~--~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                      |                           ..|+|||.+....  .++.++|||||||++|+|++|+.||..
T Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  248 (317)
T 2buj_A          179 GSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDM  248 (317)
T ss_dssp             SSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHH
T ss_pred             CcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhh
Confidence            3                           2399999654332  268899999999999999999999964

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.92  E-value=1.5e-24  Score=176.83  Aligned_cols=162  Identities=28%  Similarity=0.461  Sum_probs=124.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCc-----EEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeee
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGK-----KVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDV  108 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~-----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~  108 (218)
                      ...+..++|++.+.||+|+||.||+|.+..++.     .||+|.+.... .....+.+.+|+.+++.+ +||||++++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  118 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA-HADEKEALMSELKIMSHLGQHENIVNLLGA  118 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc-ChHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            455677899999999999999999999876554     79999986432 223457789999999999 89999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhccc-----------------------------------------CCccccc----
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHTI-----------------------------------------TSIRPHI----  142 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~~-----------------------------------------~~~~~~~----  142 (218)
                      +...+..++||||+++ +|.+++.....                                         .+++|.+    
T Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~  198 (333)
T 2i1m_A          119 CTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT  198 (333)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEE
T ss_pred             EecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEEC
Confidence            9999999999999987 99998865321                                         0333322    


Q ss_pred             -------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCc-chHH
Q 041487          143 -------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKK-DHLS  193 (218)
Q Consensus       143 -------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~-~~~~  193 (218)
                             .++|                    ..|+|||.+. +..++.++|||||||++|+|+| |..||.+... ....
T Consensus       199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~  277 (333)
T 2i1m_A          199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIF-DCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFY  277 (333)
T ss_dssp             GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHH-HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHH
T ss_pred             CCCeEEECccccccccccccceeecCCCCCCccccCHHHhc-cCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHH
Confidence                   1121                    1399999554 4558999999999999999999 9999987633 3344


Q ss_pred             HHHHH
Q 041487          194 LIVRY  198 (218)
Q Consensus       194 ~~~~~  198 (218)
                      .....
T Consensus       278 ~~~~~  282 (333)
T 2i1m_A          278 KLVKD  282 (333)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            44443

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.91  E-value=9.7e-25  Score=182.56  Aligned_cols=149  Identities=23%  Similarity=0.370  Sum_probs=118.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC--EE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR--YV  115 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~  115 (218)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|+++.... ....+.+.+|+.++++++||||+++++++....  ..
T Consensus         6 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~   84 (396)
T 4eut_A            6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHK   84 (396)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCE
T ss_pred             CCCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCee
Confidence            446789999999999999999999999999999999975332 234577889999999999999999999998654  78


Q ss_pred             EEEEecCCC-ChHHHhhhcccC------------------------------Cccccc---------------cccC---
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT------------------------------SIRPHI---------------KEVG---  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~------------------------------~~~~~~---------------~~~g---  146 (218)
                      ++||||+++ +|.+++......                              +++|.+               .++|   
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~  164 (396)
T 4eut_A           85 VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (396)
T ss_dssp             EEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred             EEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence            999999986 999888654321                              333322               1221   


Q ss_pred             --------------CcccCcccccC-------CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------------SPYKAPESRIR-------SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------------~~y~aPE~~~~-------~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                    ..|+|||.+..       ...++.++|||||||++|+|++|+.||...
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~  226 (396)
T 4eut_A          165 ELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF  226 (396)
T ss_dssp             ECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECT
T ss_pred             EccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence                          23999996543       144778999999999999999999999753

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.91  E-value=1.9e-24  Score=190.77  Aligned_cols=163  Identities=21%  Similarity=0.355  Sum_probs=123.5

Q ss_pred             cceeEE-EEeeecCceEEEEEEE--ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           41 WNYKVV-EKIGQGVFGEVYKCLN--LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        41 ~~~~~~-~~ig~G~~g~v~~~~~--~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..+.+. +.||+|+||.||+|.+  +..+..||||+++.........+.+.+|+.++++++||||+++++++.. ...++
T Consensus       368 ~~~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~l  446 (635)
T 4fl3_A          368 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWML  446 (635)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEE
T ss_pred             hhccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEE
Confidence            334443 4899999999999965  3567899999998655455557889999999999999999999999864 45889


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC------------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG------------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g------------  146 (218)
                      ||||+++ +|.+++......                           ++++.+           .+||            
T Consensus       447 v~E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~  526 (635)
T 4fl3_A          447 VMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  526 (635)
T ss_dssp             EEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred             EEEccCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence            9999987 899988654321                           333322           2222            


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcc
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNY  205 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~  205 (218)
                               ..|+|||.+ .+..++.++|||||||++|+|++ |+.||.+.+...+...+.....+..+
T Consensus       527 ~~~~~~~~t~~y~APE~~-~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p  594 (635)
T 4fl3_A          527 KAQTHGKWPVKWYAPECI-NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCP  594 (635)
T ss_dssp             --------CGGGSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCC
T ss_pred             ccccCCCCceeeeChhhh-cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCC
Confidence                     239999955 55568999999999999999999 99999988766666655544434333

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.91  E-value=2.7e-24  Score=172.26  Aligned_cols=161  Identities=24%  Similarity=0.340  Sum_probs=119.6

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ....++..++|++.+.||+|+||.||+|.+   ...+|+|.++.........+.+.+|+.+++.++||||+++++++ ..
T Consensus        16 ~~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~   91 (289)
T 3og7_A           16 ADDWEIPDGQITVGQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TA   91 (289)
T ss_dssp             --CCBCCTTSCEEEEEEEECSSEEEEEEES---SSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CS
T ss_pred             CCCCccCccceeeeeEecCCCCeEEEEEEE---cCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cC
Confidence            344567889999999999999999999975   34699999976555555567899999999999999999999965 55


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g------  146 (218)
                      ...++||||+++ +|.+++......                            ++++.+           .++|      
T Consensus        92 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  171 (289)
T 3og7_A           92 PQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKS  171 (289)
T ss_dssp             SSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC------
T ss_pred             CccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceeccccc
Confidence            668999999986 888887543211                            333322           2222      


Q ss_pred             --------------CcccCccccc--CCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHH
Q 041487          147 --------------SPYKAPESRI--RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVR  197 (218)
Q Consensus       147 --------------~~y~aPE~~~--~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~  197 (218)
                                    ..|+|||.+.  ....++.++||||||+++|+|++|+.||... ..+.+...+.
T Consensus       172 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~  239 (289)
T 3og7_A          172 RWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG  239 (289)
T ss_dssp             ------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHH
T ss_pred             cccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhc
Confidence                          2399999654  2455788999999999999999999999875 3334444433

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.91  E-value=3e-24  Score=171.16  Aligned_cols=162  Identities=20%  Similarity=0.362  Sum_probs=122.7

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ..+..++|++.+.||+|+||.||+|.+...   +..||+|.+.... .....+.+.+|+.+++.++||||+++++++..+
T Consensus         7 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   85 (281)
T 3cc6_A            7 YGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC-TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE   85 (281)
T ss_dssp             CSCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS-CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS
T ss_pred             ceecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc-CchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC
Confidence            346678999999999999999999986543   3469999987432 233467889999999999999999999998654


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g------  146 (218)
                       ..+++|||+++ +|.+++......                            +++|.+           .++|      
T Consensus        86 -~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  164 (281)
T 3cc6_A           86 -PTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIE  164 (281)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred             -CCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence             46899999986 999988654321                            333322           1222      


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhc
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFT  200 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~  200 (218)
                                   ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...........+....
T Consensus       165 ~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~  231 (281)
T 3cc6_A          165 DEDYYKASVTRLPIKWMSPESI-NFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGD  231 (281)
T ss_dssp             --------CCCCCGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTC
T ss_pred             cccccccccCCCCcceeCchhh-ccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCC
Confidence                         139999955 45568999999999999999999 999998775555555544433

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.91  E-value=9.7e-25  Score=177.64  Aligned_cols=151  Identities=21%  Similarity=0.291  Sum_probs=114.8

Q ss_pred             hhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           32 SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        32 ~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      ......+..++|++.+.||+|+||.||+|++  .++.||+|+++..   ........+|+.++++++||||+++++++..
T Consensus        15 ~~~n~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   89 (322)
T 3soc_A           15 GTENLYFQSMPLQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQ---DKQSWQNEYEVYSLPGMKHENILQFIGAEKR   89 (322)
T ss_dssp             CCCCEEETTEEEEEEEEEECSTTCEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred             CccccccchhhchhhheecccCceEEEEEEE--CCCEEEEEEeecC---chHHHHHHHHHHHHhcCCCCCchhhcceecc
Confidence            3445557889999999999999999999987  4899999998643   2223455668888999999999999999976


Q ss_pred             C----CEEEEEEecCCC-ChHHHhhhcccC------------------------------------Cccccc--------
Q 041487          112 G----RYVYLVFEYLDL-DLGSFIRKHTIT------------------------------------SIRPHI--------  142 (218)
Q Consensus       112 ~----~~~~lv~E~~~~-~L~~~~~~~~~~------------------------------------~~~~~~--------  142 (218)
                      .    ..+++||||+++ +|.+++......                                    +++|.+        
T Consensus        90 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~  169 (322)
T 3soc_A           90 GTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLT  169 (322)
T ss_dssp             ECSSSEEEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCC
T ss_pred             CCCCCceEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCe
Confidence            3    358999999987 999887653211                                    222221        


Q ss_pred             ---cccC--------------------CcccCcccccCC----CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          143 ---KEVG--------------------SPYKAPESRIRS----SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       143 ---~~~g--------------------~~y~aPE~~~~~----~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                         .+||                    ..|+|||.+...    ..++.++|||||||++|+|+||+.||.+.
T Consensus       170 ~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  241 (322)
T 3soc_A          170 ACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGP  241 (322)
T ss_dssp             EEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSC
T ss_pred             EEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCC
Confidence               2222                    239999965542    23556889999999999999999999865

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.91  E-value=2e-24  Score=171.98  Aligned_cols=155  Identities=28%  Similarity=0.467  Sum_probs=119.5

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-CCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-GRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~  114 (218)
                      ..+..++|++.+.||+|+||.||+|.+  .+..||+|.++..    ...+.+.+|+.+++.++||||+++++++.. .+.
T Consensus        16 ~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (278)
T 1byg_A           16 WALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG   89 (278)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCC----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--C
T ss_pred             ccCChhhceEEeEEecCCCceEEEEEE--cCCEEEEEEecch----hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCc
Confidence            346678999999999999999999987  5889999998632    345789999999999999999999998754 457


Q ss_pred             EEEEEecCCC-ChHHHhhhccc---C--------------------------Cccccc-----------cccC-------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~~-----------~~~g-------  146 (218)
                      .++||||+++ +|.+++.....   .                          +++|.+           .++|       
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  169 (278)
T 1byg_A           90 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS  169 (278)
T ss_dssp             CEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC------
T ss_pred             eEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccccccc
Confidence            9999999988 99998865421   1                          333322           2222       


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                              ..|+|||.+ .+..++.++||||||+++|+|+| |+.||.......+...+.
T Consensus       170 ~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~  228 (278)
T 1byg_A          170 TQDTGKLPVKWTAPEAL-REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVE  228 (278)
T ss_dssp             ------CCTTTSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHT
T ss_pred             cccCCCccccccCHHHh-CCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh
Confidence                    239999954 45568999999999999999999 999998876555544443

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.91  E-value=5.2e-24  Score=173.44  Aligned_cols=161  Identities=28%  Similarity=0.584  Sum_probs=123.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEE-ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC------eeeeeeeE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLN-LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN------IVRLLDVL  109 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~  109 (218)
                      ....++|++.+.||+|+||.||+|.+ ..+++.||+|+++..   ....+.+.+|+.+++.++|++      ++++++++
T Consensus        10 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~   86 (339)
T 1z57_A           10 DVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV---DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWF   86 (339)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEE
T ss_pred             CCccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC---CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccc
Confidence            34567899999999999999999998 557899999998632   234567888999988887654      99999999


Q ss_pred             EeCCEEEEEEecCCCChHHHhhhcccC-----------------------------Ccccc-------------------
Q 041487          110 TTGRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPH-------------------  141 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~-------------------  141 (218)
                      ...+.+++||||++++|.+++......                             +++|.                   
T Consensus        87 ~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~  166 (339)
T 1z57_A           87 EHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKR  166 (339)
T ss_dssp             EETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred             ccCCcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCcccc
Confidence            999999999999988999998765421                             22222                   


Q ss_pred             -----------ccccCC---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcch-HHH
Q 041487          142 -----------IKEVGS---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH-LSL  194 (218)
Q Consensus       142 -----------~~~~g~---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~-~~~  194 (218)
                                 +.++|.               .|+|||.+ .+..++.++|||||||++|+|++|+.||...+... +..
T Consensus       167 ~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~  245 (339)
T 1z57_A          167 DERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVI-LALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAM  245 (339)
T ss_dssp             EEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHH-TTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHH
T ss_pred             ccccccCCCceEeeCcccccCccccccccCCccccChHHh-hCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHH
Confidence                       222322               29999954 45568999999999999999999999999874433 333


Q ss_pred             HHHHhcc
Q 041487          195 IVRYFTA  201 (218)
Q Consensus       195 ~~~~~~~  201 (218)
                      +.+..++
T Consensus       246 ~~~~~~~  252 (339)
T 1z57_A          246 MERILGP  252 (339)
T ss_dssp             HHHHHCS
T ss_pred             HHHHhCC
Confidence            4343333

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.91  E-value=2.1e-24  Score=173.77  Aligned_cols=178  Identities=21%  Similarity=0.290  Sum_probs=126.5

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC--CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--eCCEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--TGRYV  115 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~  115 (218)
                      .++|++.+.||+|+||.||+|.+..++..+|+|++....  ......+.+.+|+.+++.++||||+++++++.  .....
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            478999999999999999999999999999999997542  12345678999999999999999999999984  45679


Q ss_pred             EEEEecCCCChHHHhhhcccC-----------------------------Cccccc-----------ccc----------
Q 041487          116 YLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI-----------KEV----------  145 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~----------  145 (218)
                      ++||||++++|.+++......                             ++++.+           .++          
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~  163 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFA  163 (305)
T ss_dssp             EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTC
T ss_pred             EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCccc
Confidence            999999998877776542211                             222221           111          


Q ss_pred             ----------CCcccCcccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccC---cccchhhh
Q 041487          146 ----------GSPYKAPESRIRSS-VYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT---NYLVLPCF  211 (218)
Q Consensus       146 ----------g~~y~aPE~~~~~~-~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~  211 (218)
                                ...|+|||.+.... .++.++||||||+++|+|++|+.||.+.+...+...+.......   .+..+.++
T Consensus       164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l  243 (305)
T 2wtk_C          164 ADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDL  243 (305)
T ss_dssp             SSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHHHH
T ss_pred             cccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCCccCHHHHHH
Confidence                      22399999654432 24779999999999999999999999875554444433321111   12334455


Q ss_pred             hhhccc
Q 041487          212 LSIMLL  217 (218)
Q Consensus       212 ~~~~l~  217 (218)
                      +..||+
T Consensus       244 i~~~l~  249 (305)
T 2wtk_C          244 LKGMLE  249 (305)
T ss_dssp             HHHHTC
T ss_pred             HHHHcc
Confidence            555553

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.91  E-value=4.2e-24  Score=172.72  Aligned_cols=155  Identities=24%  Similarity=0.425  Sum_probs=120.3

Q ss_pred             hhhhhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeee
Q 041487           32 SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRL  105 (218)
Q Consensus        32 ~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~  105 (218)
                      ......+..++|++.+.||+|+||.||+|.+.     .+++.||+|.++... .....+.+.+|+.+++++ +||||+++
T Consensus        18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC-CcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34455677899999999999999999999853     466899999987432 223456788999999999 78999999


Q ss_pred             eeeEEeC-CEEEEEEecCCC-ChHHHhhhccc----------------C---------------------------Cccc
Q 041487          106 LDVLTTG-RYVYLVFEYLDL-DLGSFIRKHTI----------------T---------------------------SIRP  140 (218)
Q Consensus       106 ~~~~~~~-~~~~lv~E~~~~-~L~~~~~~~~~----------------~---------------------------~~~~  140 (218)
                      ++++... ..++++|||+++ +|.+++.....                .                           +++|
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp  176 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA  176 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCcc
Confidence            9998754 459999999997 99999876432                0                           2222


Q ss_pred             cc-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC
Q 041487          141 HI-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK  188 (218)
Q Consensus       141 ~~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~  188 (218)
                      .+           .++|                    ..|+|||.+. +..++.++|||||||++|+|+| |+.||....
T Consensus       177 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~  255 (316)
T 2xir_A          177 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  255 (316)
T ss_dssp             GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhc-cccccchhHHHHHHHHHHHHHhCCCCCCcccc
Confidence            21           1111                    1399999554 5558999999999999999998 999998764

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.91  E-value=1.8e-24  Score=177.29  Aligned_cols=152  Identities=17%  Similarity=0.336  Sum_probs=118.8

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCc---------------hHHHHHHHHHHhhCCCC
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGV---------------PSYLIAGVSLLKELEHD  100 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~---------------~~~~~~e~~~l~~l~h~  100 (218)
                      .....++|++.+.||+|+||.||+|.+  ++..||+|.+.........               .+.+.+|+.++++++||
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~  103 (348)
T 2pml_X           26 KDKYINDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNE  103 (348)
T ss_dssp             SCEEETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCT
T ss_pred             cccccCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCC
Confidence            345578999999999999999999998  8999999999754322211               17899999999999999


Q ss_pred             CeeeeeeeEEeCCEEEEEEecCCC-ChHHH------hhhc--cc----------------------------CCccccc-
Q 041487          101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSF------IRKH--TI----------------------------TSIRPHI-  142 (218)
Q Consensus       101 ~iv~~~~~~~~~~~~~lv~E~~~~-~L~~~------~~~~--~~----------------------------~~~~~~~-  142 (218)
                      ||+++++++...+..++||||+++ +|.++      +...  ..                            .++++.+ 
T Consensus       104 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Ni  183 (348)
T 2pml_X          104 YCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNI  183 (348)
T ss_dssp             TBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGE
T ss_pred             CcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhE
Confidence            999999999999999999999987 88887      4331  00                            0222221 


Q ss_pred             ----------cccC----------------CcccCcccccCCCCCCC-cchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          143 ----------KEVG----------------SPYKAPESRIRSSVYST-PHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       143 ----------~~~g----------------~~y~aPE~~~~~~~~~~-~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                                .++|                ..|+|||.+.....++. ++|||||||++|+|++|+.||.....
T Consensus       184 l~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  257 (348)
T 2pml_X          184 LMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS  257 (348)
T ss_dssp             EECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC
T ss_pred             EEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence                      2222                23999996655535666 99999999999999999999987644

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.91  E-value=7.6e-24  Score=171.36  Aligned_cols=153  Identities=20%  Similarity=0.333  Sum_probs=106.9

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ......++|++.+.||+|+||.||+|.++.+++.||+|.+..........+.+.++..+++.++||||+++++++.....
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~   98 (318)
T 2dyl_A           19 RYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTD   98 (318)
T ss_dssp             EEECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             hhhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCc
Confidence            34456788999999999999999999999999999999997554333333445555567888899999999999999999


Q ss_pred             EEEEEecCCCChHHHhhhc---------------------------cc--CCccccc-----------cccC--------
Q 041487          115 VYLVFEYLDLDLGSFIRKH---------------------------TI--TSIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~---------------------------~~--~~~~~~~-----------~~~g--------  146 (218)
                      .++||||++..+..+....                           +.  .++++.+           .++|        
T Consensus        99 ~~lv~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  178 (318)
T 2dyl_A           99 VFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD  178 (318)
T ss_dssp             EEEEECCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred             EEEEEeccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence            9999999954444333221                           11  0222221           2222        


Q ss_pred             ---------CcccCccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------SPYKAPESRI----RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------~~y~aPE~~~----~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               ..|+|||.+.    ....++.++|||||||++|+|++|+.||...
T Consensus       179 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (318)
T 2dyl_A          179 KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC  232 (318)
T ss_dssp             --------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCC
Confidence                     2399999664    3455889999999999999999999999864

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.91  E-value=2.9e-24  Score=172.73  Aligned_cols=149  Identities=23%  Similarity=0.386  Sum_probs=115.2

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEE----EccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCL----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      ...+....|++.+.||+|+||.||+|.    +..+++.||+|.+.... .....+.+.+|+.+++.++||||+++++++.
T Consensus        15 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   93 (302)
T 4e5w_A           15 PTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICT   93 (302)
T ss_dssp             TTBCCGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------CCHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             hhhhhhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc-cchhHHHHHHHHHHHHhCCCCCeeeeeeEEe
Confidence            444667789999999999999999998    45688999999997543 3345678999999999999999999999997


Q ss_pred             eC--CEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccCC-
Q 041487          111 TG--RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS-  147 (218)
Q Consensus       111 ~~--~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~-  147 (218)
                      ..  ..+++||||+++ +|.+++......                            +++|.+           .++|. 
T Consensus        94 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~  173 (302)
T 4e5w_A           94 EDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT  173 (302)
T ss_dssp             C---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred             cCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECccccc
Confidence            66  669999999987 999998543221                            333322           22221 


Q ss_pred             --------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          148 --------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       148 --------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                                          .|+|||.+. +..++.++||||||+++|+|++|+.|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~~l~~g~~p~~  230 (302)
T 4e5w_A          174 KAIETDKEYYTVKDDRDSPVFWYAPECLM-QSKFYIASDVWSFGVTLHELLTYCDSDS  230 (302)
T ss_dssp             EECCTTCCEEECCCCTTCCGGGCCHHHHH-HCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             ccccCCCcceeccCCCCCCccccCCeeec-CCCCCcchhHHHHHHHHHHHHHccCCCc
Confidence                                299999554 4457899999999999999999998864

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.91  E-value=3e-24  Score=173.79  Aligned_cols=155  Identities=30%  Similarity=0.477  Sum_probs=122.1

Q ss_pred             hhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC--CCCeeeeeeeE
Q 041487           32 SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE--HDNIVRLLDVL  109 (218)
Q Consensus        32 ~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~~~~~~  109 (218)
                      ..+...+...+|++.+.||+|+||.||+|.+. +++.||+|.+..........+.+.+|+.+++++.  |+||+++++++
T Consensus        19 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~   97 (313)
T 3cek_A           19 YFQSMSVKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE   97 (313)
T ss_dssp             -CCEEEETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred             CeeeeeeccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence            34445567788999999999999999999875 5889999999765545555678899999999996  59999999999


Q ss_pred             EeCCEEEEEEecCCCChHHHhhhcccC---------------------------Cccccc----------ccc-------
Q 041487          110 TTGRYVYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPHI----------KEV-------  145 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~~----------~~~-------  145 (218)
                      ......+++||+..++|.+++......                           ++++.+          .++       
T Consensus        98 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~kL~Dfg~~~~~~  177 (313)
T 3cek_A           98 ITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQ  177 (313)
T ss_dssp             ECSSEEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTEEEECCCSSSCC--
T ss_pred             ecCCEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEECCeEEEeecccccccc
Confidence            999999999997777999988764321                           222221          122       


Q ss_pred             -------------CCcccCcccccC----------CCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 -------------GSPYKAPESRIR----------SSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 -------------g~~y~aPE~~~~----------~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                   ...|+|||.+..          ...++.++|||||||++|+|++|+.||...
T Consensus       178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (313)
T 3cek_A          178 PDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  242 (313)
T ss_dssp             ------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             CccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhH
Confidence                         223999996543          145888999999999999999999999865

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.91  E-value=2.5e-24  Score=175.25  Aligned_cols=155  Identities=23%  Similarity=0.412  Sum_probs=109.2

Q ss_pred             hhhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHH-HHhhCCCCCeeeeeeeEE
Q 041487           32 SEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS-LLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        32 ~~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~-~l~~l~h~~iv~~~~~~~  110 (218)
                      +.+...+..++|++.+.||+|+||.||+|.++.+++.||+|.++.... ......+..|+. +++.++||||+++++++.
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~   91 (327)
T 3aln_A           13 PEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD-EKEQKQLLMDLDVVMRSSDCPYIVQFYGALF   91 (327)
T ss_dssp             CCEEECCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC-HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEE
T ss_pred             hHHhcccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC-chHHHHHHHHHHHHHHcCCCCcEeeeeeEEE
Confidence            344556778999999999999999999999999999999999975432 223344555555 677789999999999999


Q ss_pred             eCCEEEEEEecCCCChHHHhhhc-----cc----------------------------CCccccc-----------cccC
Q 041487          111 TGRYVYLVFEYLDLDLGSFIRKH-----TI----------------------------TSIRPHI-----------KEVG  146 (218)
Q Consensus       111 ~~~~~~lv~E~~~~~L~~~~~~~-----~~----------------------------~~~~~~~-----------~~~g  146 (218)
                      ..+..++||||++++|.+++...     ..                            .++++.+           .++|
T Consensus        92 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg  171 (327)
T 3aln_A           92 REGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFG  171 (327)
T ss_dssp             CSSEEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCS
T ss_pred             eCCceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCC
Confidence            99999999999998887776531     00                            0222221           2222


Q ss_pred             -----------------CcccCccccc---CCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----------------SPYKAPESRI---RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----------------~~y~aPE~~~---~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                       ..|+|||.+.   .+..++.++|||||||++|+|++|+.||...
T Consensus       172 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (327)
T 3aln_A          172 ISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKW  232 (327)
T ss_dssp             SSCC------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred             CceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence                             2399999653   3455899999999999999999999999864

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.91  E-value=9.5e-25  Score=180.55  Aligned_cols=145  Identities=17%  Similarity=0.239  Sum_probs=112.9

Q ss_pred             hhhccceeEEEEeeecCceEEEEEE-----EccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC---CCCeeeeeee
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCL-----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE---HDNIVRLLDV  108 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~-----~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~  108 (218)
                      .+..++|.+.+.||+|+||.||+|.     +..+++.||+|.++..     ....+.+|+.++..+.   |++++++++.
T Consensus        61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~~~~l~~~~~~~iv~~~~~  135 (365)
T 3e7e_A           61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-----NPWEFYIGTQLMERLKPSMQHMFMKFYSA  135 (365)
T ss_dssp             ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-----CHHHHHHHHHHHHHSCGGGGGGBCCEEEE
T ss_pred             EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-----ChhHHHHHHHHHHHhhhhhhhhhhhhhee
Confidence            4566789999999999999999994     5678899999998632     3456788888888886   9999999999


Q ss_pred             EEeCCEEEEEEecCCC-ChHHHhhhcc------cC--------------------------Ccccc--------------
Q 041487          109 LTTGRYVYLVFEYLDL-DLGSFIRKHT------IT--------------------------SIRPH--------------  141 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~~~~~~~------~~--------------------------~~~~~--------------  141 (218)
                      +...+..++||||+++ +|.+++....      ..                          +++|.              
T Consensus       136 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~  215 (365)
T 3e7e_A          136 HLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDE  215 (365)
T ss_dssp             EECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC---
T ss_pred             eecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCcccc
Confidence            9999999999999986 9999986421      10                          22222              


Q ss_pred             --------ccccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          142 --------IKEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       142 --------~~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                              +.+||.                    .|+|||.+ .+..++.++|||||||++|+|+||+.||...
T Consensus       216 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML-SNKPWNYQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             ---CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH-TTCCBSTHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             ccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh-cCCCCCccccHHHHHHHHHHHHhCCCccccC
Confidence                    223332                    29999954 5555899999999999999999999998643

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.91  E-value=6e-24  Score=170.25  Aligned_cols=145  Identities=28%  Similarity=0.441  Sum_probs=113.1

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +.|.....||+|+||.||+|.+..++..||+|.++..  .....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   99 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER--DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFME   99 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC--CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC--chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEE
Confidence            3344455999999999999999999999999998753  33446789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC------------------------------Ccccc------------ccccC-----------
Q 041487          121 YLDL-DLGSFIRKHTIT------------------------------SIRPH------------IKEVG-----------  146 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~------------------------------~~~~~------------~~~~g-----------  146 (218)
                      |+++ +|.+++......                              ++++.            +.++|           
T Consensus       100 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~  179 (295)
T 2clq_A          100 QVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC  179 (295)
T ss_dssp             CCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred             eCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCc
Confidence            9976 888887654210                              22221            11222           


Q ss_pred             -------CcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -------SPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -------~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                             ..|+|||.+... ..++.++||||||+++|+|++|+.||...
T Consensus       180 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (295)
T 2clq_A          180 TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL  228 (295)
T ss_dssp             -CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred             ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence                   239999966543 23788999999999999999999999764

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.91  E-value=2.4e-24  Score=176.88  Aligned_cols=154  Identities=19%  Similarity=0.266  Sum_probs=112.2

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEcc---CCcEEEEEEeecCCCCC---------CchHHHHHHHHHHhhCCCC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLE---TGKKVAIKMINIQNEPE---------GVPSYLIAGVSLLKELEHD  100 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~---------~~~~~~~~e~~~l~~l~h~  100 (218)
                      .....+..++|++.+.||+|+||.||+|.+..   ++..+|+|.+.......         .....+.+|+..++.++||
T Consensus        29 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~  108 (345)
T 2v62_A           29 KVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYL  108 (345)
T ss_dssp             CEEECTTSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCC
T ss_pred             CeeccccCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhcccccc
Confidence            44455667899999999999999999999976   78899999987542110         0123466788889999999


Q ss_pred             CeeeeeeeEEe----CCEEEEEEecCCCChHHHhhhcccC---------------------------Ccccc--------
Q 041487          101 NIVRLLDVLTT----GRYVYLVFEYLDLDLGSFIRKHTIT---------------------------SIRPH--------  141 (218)
Q Consensus       101 ~iv~~~~~~~~----~~~~~lv~E~~~~~L~~~~~~~~~~---------------------------~~~~~--------  141 (218)
                      ||+++++++..    ....++||||+.++|.+++......                           +++|.        
T Consensus       109 ni~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~  188 (345)
T 2v62_A          109 GIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKN  188 (345)
T ss_dssp             CCCCEEEEEEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSS
T ss_pred             CcceeecccccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCC
Confidence            99999999987    7899999999966999988754321                           22221        


Q ss_pred             -----ccccC-------------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          142 -----IKEVG-------------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       142 -----~~~~g-------------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                           +.++|                         ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       189 ~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~slG~il~ell~g~~pf~~~  263 (345)
T 2v62_A          189 PDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAH-KGVALSRRSDVEILGYCMLRWLCGKLPWEQN  263 (345)
T ss_dssp             TTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHH-HTCCCCHHHHHHHHHHHHHHHHHSSCTTGGG
T ss_pred             CCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHh-cCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence                 12222                         239999954 4556899999999999999999999999653

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=170.07  Aligned_cols=143  Identities=30%  Similarity=0.409  Sum_probs=113.5

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      .+..++|++.+.||+|+||.||+|..  .+..||+|.+..    ....+.+.+|+.++++++||||+++++++.+.  .+
T Consensus         4 ~i~~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~----~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~   75 (307)
T 2eva_A            4 MIDYKEIEVEEVVGRGAFGVVCKAKW--RAKDVAIKQIES----ESERKAFIVELRQLSRVNHPNIVKLYGACLNP--VC   75 (307)
T ss_dssp             BCCGGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEECSS----TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTTT--TE
T ss_pred             cCCHhHeeeeeEeecCCCceEEEEEE--CCeeEEEEEecC----hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC--cE
Confidence            35678899999999999999999987  578999999752    34567899999999999999999999988744  78


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------------Ccccc------------ccccC----
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------------SIRPH------------IKEVG----  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------------~~~~~------------~~~~g----  146 (218)
                      +||||+++ +|.+++......                                 ++++.            +.++|    
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~  155 (307)
T 2eva_A           76 LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACD  155 (307)
T ss_dssp             EEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---
T ss_pred             EEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccc
Confidence            99999986 888887643210                                 22221            22232    


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                 ..|+|||. ..+..++.++||||||+++|+|++|+.||....
T Consensus       156 ~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  207 (307)
T 2eva_A          156 IQTHMTNNKGSAAWMAPEV-FEGSNYSEKCDVFSWGIILWEVITRRKPFDEIG  207 (307)
T ss_dssp             ---------CCTTSSCHHH-HTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTC
T ss_pred             cccccccCCCCCceEChhh-hCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhC
Confidence                       23999995 455568999999999999999999999998653

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.91  E-value=9.7e-24  Score=173.00  Aligned_cols=162  Identities=25%  Similarity=0.524  Sum_probs=123.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCC-cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC------eeeeeeeE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETG-KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN------IVRLLDVL  109 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~-~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~  109 (218)
                      ....++|++.+.||+|+||.||+|.+..++ ..||+|+++..   ....+.+.+|+.+++.+.|++      ++.+++++
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~   91 (355)
T 2eu9_A           15 DWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV---GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWF   91 (355)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEE
T ss_pred             ceecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc---ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeee
Confidence            345789999999999999999999998776 68999998632   234567888999999887665      89999999


Q ss_pred             EeCCEEEEEEecCCCChHHHhhhcccC-----------------------------Cccccc------------------
Q 041487          110 TTGRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI------------------  142 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~------------------  142 (218)
                      ...+..++||||+++++.+++......                             +++|.+                  
T Consensus        92 ~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~  171 (355)
T 2eu9_A           92 NFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSC  171 (355)
T ss_dssp             EETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred             eeCCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccc
Confidence            999999999999988888887654311                             233222                  


Q ss_pred             ------------cccCC---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHH
Q 041487          143 ------------KEVGS---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSL  194 (218)
Q Consensus       143 ------------~~~g~---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~  194 (218)
                                  .++|.               .|+|||.+. +..++.++|||||||++|+|++|+.||...+. +.+..
T Consensus       172 ~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~  250 (355)
T 2eu9_A          172 EEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVIL-ELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVM  250 (355)
T ss_dssp             CEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHT-TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred             cccccCCCcEEEeecCccccccccccCCcCCCcccCCeeee-cCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                        22222               299999554 55689999999999999999999999998743 33444


Q ss_pred             HHHHhccc
Q 041487          195 IVRYFTAL  202 (218)
Q Consensus       195 ~~~~~~~~  202 (218)
                      +.+..+++
T Consensus       251 ~~~~~~~~  258 (355)
T 2eu9_A          251 MEKILGPI  258 (355)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHcCCC
Confidence            44444443

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.91  E-value=1.9e-24  Score=175.07  Aligned_cols=162  Identities=22%  Similarity=0.282  Sum_probs=127.1

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      .....+..++|++.+.||+|+||.||+|.++.   .+|+|.++.........+.+.+|+.++++++||||+++++++...
T Consensus        25 ~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  101 (319)
T 2y4i_B           25 LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSP  101 (319)
T ss_dssp             GGGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECS
T ss_pred             cccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecC
Confidence            45556778999999999999999999998743   599999976555555566788999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc----------ccccC-------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH----------IKEVG-------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~----------~~~~g-------  146 (218)
                      ...+++|||+++ +|.+++......                            ++++.          +.++|       
T Consensus       102 ~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~~~~~~l~Dfg~~~~~~~  181 (319)
T 2y4i_B          102 PHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVVITDFGLFSISGV  181 (319)
T ss_dssp             SCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC--CCEECCCSCCC----
T ss_pred             CceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEeCCCEEEeecCCcccccc
Confidence            999999999986 999988764311                            23222          12333       


Q ss_pred             ----------------CcccCcccccC--------CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 ----------------SPYKAPESRIR--------SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ----------------~~y~aPE~~~~--------~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                      ..|+|||.+..        ...++.++|||||||++|+|++|+.||...........+.
T Consensus       182 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~  256 (319)
T 2y4i_B          182 LQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMG  256 (319)
T ss_dssp             ------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHH
T ss_pred             ccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhc
Confidence                            23899996653        3447889999999999999999999998876555544443

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.91  E-value=3.3e-24  Score=174.18  Aligned_cols=145  Identities=21%  Similarity=0.346  Sum_probs=117.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++.+.||+|+||.||+|.+ .++..||+|.+...  .....+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  113 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALKRRTPE--SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILI  113 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEEC-TTCCEEEEEECCSC--CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEE
T ss_pred             HHhccCccceeecCCCeeEEEEEE-CCCCEEEEEEeccc--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEE
Confidence            457899999999999999999996 46899999987643  334567899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC-------------------------------Cccccc-----------cccC---------
Q 041487          119 FEYLDL-DLGSFIRKHTIT-------------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~-------------------------------~~~~~~-----------~~~g---------  146 (218)
                      |||+++ +|.+++......                               +++|.+           .++|         
T Consensus       114 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  193 (321)
T 2qkw_B          114 YKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELD  193 (321)
T ss_dssp             EECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSS
T ss_pred             EEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccccccccc
Confidence            999986 888887543210                               222221           2222         


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                 ..|+|||.+. +..++.++|||||||++|+|++|+.||...
T Consensus       194 ~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Di~slG~il~ell~g~~p~~~~  244 (321)
T 2qkw_B          194 QTHLSTVVKGTLGYIDPEYFI-KGRLTEKSDVYSFGVVLFEVLCARSAIVQS  244 (321)
T ss_dssp             CCCCBCCCEEETTTCCHHHHH-HCBCCTHHHHHHHHHHHHHHHHCCTTCSCS
T ss_pred             ccccccccCCCccccCHHHhc-CCCCCcccchHhHHHHHHHHHhCCCccccc
Confidence                       2399999654 445899999999999999999999999865

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.91  E-value=4.6e-24  Score=169.92  Aligned_cols=142  Identities=27%  Similarity=0.399  Sum_probs=113.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------  111 (218)
                      ....+|++.+.||+|+||.||+|.+..+++.||+|.++...      +.+.+|+.+++.++||||+++++++..      
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (284)
T 2a19_B            8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE   81 (284)
T ss_dssp             HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred             hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence            44678999999999999999999998899999999987431      457789999999999999999998854      


Q ss_pred             ----------CCEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc---------
Q 041487          112 ----------GRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI---------  142 (218)
Q Consensus       112 ----------~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~---------  142 (218)
                                ...++++|||+++ +|.+++......                             +++|.+         
T Consensus        82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             -------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEE
T ss_pred             cccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCE
Confidence                      4568999999997 999998654211                             222221         


Q ss_pred             --cccC-----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          143 --KEVG-----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       143 --~~~g-----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                        .++|                 ..|+|||.+ .+..++.++||||||+++|+|++|..||..
T Consensus       162 kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~~~~~~~~  223 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQI-SSQDYGKEVDLYALGLILAELLHVCDTAFE  223 (284)
T ss_dssp             EECCCTTCEESSCCSCCCCCCSCCTTSCHHHH-HCSCCCTHHHHHHHHHHHHHHHSCCSSHHH
T ss_pred             EECcchhheeccccccccccCCcccccChhhh-ccCCCcchhhhHHHHHHHHHHHhcCCcchh
Confidence              2222                 239999954 455689999999999999999999988853

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.91  E-value=3.9e-24  Score=176.01  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=110.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc--------CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeee-----
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE--------TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVR-----  104 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~--------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~-----  104 (218)
                      ...++|++.+.||+|+||.||+|.+..        .++.||+|.+...       +.+.+|+.++++++||||++     
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~  111 (352)
T 2jii_A           39 KSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKL  111 (352)
T ss_dssp             TTSCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccCCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhh
Confidence            345899999999999999999999876        4889999998743       35889999999999999887     


Q ss_pred             ----------eeeeEEe-CCEEEEEEecCCCChHHHhhhc--ccC---------------------------Cccccc--
Q 041487          105 ----------LLDVLTT-GRYVYLVFEYLDLDLGSFIRKH--TIT---------------------------SIRPHI--  142 (218)
Q Consensus       105 ----------~~~~~~~-~~~~~lv~E~~~~~L~~~~~~~--~~~---------------------------~~~~~~--  142 (218)
                                +++++.. ....++||||+.++|.+++...  ...                           +++|.+  
T Consensus       112 ~~~~~~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl  191 (352)
T 2jii_A          112 YSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIF  191 (352)
T ss_dssp             TTCTTCSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEE
T ss_pred             ccCCccCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE
Confidence                      5666665 7889999999966999998764  111                           222211  


Q ss_pred             -----------ccc------------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          143 -----------KEV------------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       143 -----------~~~------------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                 .++                        | ..|+|||. ..+..++.++|||||||++|+|++|+.||..
T Consensus       192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~el~~g~~pf~~  270 (352)
T 2jii_A          192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDL-HKGCGPSRRSDLQSLGYCMLKWLYGFLPWTN  270 (352)
T ss_dssp             EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred             EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHH-HccCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence                       111                        2 24999995 4555689999999999999999999999987


Q ss_pred             C
Q 041487          187 G  187 (218)
Q Consensus       187 ~  187 (218)
                      .
T Consensus       271 ~  271 (352)
T 2jii_A          271 C  271 (352)
T ss_dssp             G
T ss_pred             C
Confidence            5

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=5.7e-24  Score=176.71  Aligned_cols=155  Identities=26%  Similarity=0.436  Sum_probs=116.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCC---cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE-eCCEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETG---KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT-TGRYVY  116 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~---~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~  116 (218)
                      ..|++.+.||+|+||.||+|.....+   ..||+|.++.. ......+.+.+|+.++++++||||+++++++. ..+..+
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~  167 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL  167 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC-SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE
Confidence            35788999999999999999876543   46899988642 23345678999999999999999999999864 556889


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +||||+++ +|.+++......                            +++|.+           .+||          
T Consensus       168 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~  247 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF  247 (373)
T ss_dssp             EEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------
T ss_pred             EEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccccc
Confidence            99999987 999998653221                            233221           2222          


Q ss_pred             ------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 ------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 ------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                  ..|+|||.+ .+..++.++|||||||++|+|+| |.+||...+...+...+.
T Consensus       248 ~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~  310 (373)
T 3c1x_A          248 DSVHNKTGAKLPVKWMALESL-QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLL  310 (373)
T ss_dssp             ----------CCGGGSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHH
T ss_pred             ccccccCCCCCcccccChHHh-cCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH
Confidence                        139999954 45568999999999999999999 788998775544444443

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=2e-23  Score=167.44  Aligned_cols=164  Identities=21%  Similarity=0.320  Sum_probs=119.4

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCc---EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE-EE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY-VY  116 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~---~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-~~  116 (218)
                      -.|++.+.||+|+||.||+|.+..++.   .+|+|.+... ......+.+.+|+.+++.++||||+++++++..... .+
T Consensus        21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   99 (298)
T 3pls_A           21 VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI-TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH   99 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC-CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             eEEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc-ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence            346778999999999999999765544   7999998642 233345788899999999999999999999976554 49


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccCC---------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS---------  147 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~---------  147 (218)
                      ++|||+.+ +|.+++......                            +++|.+           .++|.         
T Consensus       100 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~  179 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREY  179 (298)
T ss_dssp             EEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGG
T ss_pred             EEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcc
Confidence            99999975 999888653221                            233322           22221         


Q ss_pred             -------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCccc
Q 041487          148 -------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYL  206 (218)
Q Consensus       148 -------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~  206 (218)
                                   .|+|||. ..+..++.++||||||+++|+|++ |.+||...+...+...+.....++.+.
T Consensus       180 ~~~~~~~~~~~~~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (298)
T 3pls_A          180 YSVQQHRHARLPVKWTALES-LQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPE  251 (298)
T ss_dssp             GCSCCSSCTTCGGGGSCHHH-HTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCT
T ss_pred             cccccCcCCCCCccccChhh-hccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCc
Confidence                         3899995 455568999999999999999999 556676666666666555444443333

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.90  E-value=7.7e-24  Score=175.04  Aligned_cols=162  Identities=27%  Similarity=0.519  Sum_probs=121.2

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-----------CCCeeeee
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-----------HDNIVRLL  106 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~~iv~~~  106 (218)
                      +..++|++.+.||+|+||.||+|.+..+++.||+|++..   .....+.+.+|+.+++++.           |+||++++
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~   92 (373)
T 1q8y_A           16 YKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG---DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLL   92 (373)
T ss_dssp             ETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCC
T ss_pred             ccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC---CccchhhhhHHHHHHHHhhcccccchhccccchHHHHH
Confidence            456889999999999999999999999999999999863   2223467888999888876           88999999


Q ss_pred             eeEEeCC----EEEEEEecCCCChHHHhhhcccC------------------------------Ccccc-----------
Q 041487          107 DVLTTGR----YVYLVFEYLDLDLGSFIRKHTIT------------------------------SIRPH-----------  141 (218)
Q Consensus       107 ~~~~~~~----~~~lv~E~~~~~L~~~~~~~~~~------------------------------~~~~~-----------  141 (218)
                      +++...+    .++++||++.++|.+++......                              +++|.           
T Consensus        93 ~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~  172 (373)
T 1q8y_A           93 DHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPE  172 (373)
T ss_dssp             EEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTT
T ss_pred             HHhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCc
Confidence            9997544    79999999977888887653211                              22222           


Q ss_pred             ------ccccCC---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-------cchHH
Q 041487          142 ------IKEVGS---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-------KDHLS  193 (218)
Q Consensus       142 ------~~~~g~---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-------~~~~~  193 (218)
                            +.++|.               .|+|||.+. +..++.++|||||||++|+|++|+.||...+       .+.+.
T Consensus       173 ~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~  251 (373)
T 1q8y_A          173 NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLL-GAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIA  251 (373)
T ss_dssp             TEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHH-TCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHH
T ss_pred             CcceEEEcccccccccCCCCCCCCCCccccCcHHHh-CCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHH
Confidence                  223332               299999654 5558999999999999999999999998653       33455


Q ss_pred             HHHHHhcccC
Q 041487          194 LIVRYFTALT  203 (218)
Q Consensus       194 ~~~~~~~~~~  203 (218)
                      .++..++.++
T Consensus       252 ~~~~~~~~~p  261 (373)
T 1q8y_A          252 QIIELLGELP  261 (373)
T ss_dssp             HHHHHHCSCC
T ss_pred             HHHHhcCCCC
Confidence            5555555443

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.90  E-value=1e-23  Score=169.38  Aligned_cols=156  Identities=26%  Similarity=0.434  Sum_probs=115.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE-EeCCEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL-TTGRYV  115 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~  115 (218)
                      ...|++.+.||+|+||.||+|.+..+   ...+|+|.+... ......+.+.+|+.++++++||||+++++++ ...+..
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  102 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP  102 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC-CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC-CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence            35689999999999999999987543   346899988642 2333457789999999999999999999985 456788


Q ss_pred             EEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g---------  146 (218)
                      +++|||+++ +|.+++......                            +++|.+           .++|         
T Consensus       103 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~  182 (298)
T 3f66_A          103 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  182 (298)
T ss_dssp             EEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGG
T ss_pred             EEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccc
Confidence            999999988 999998653221                            233322           1222         


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~  197 (218)
                                   ..|+|||.+ .+..++.++||||||+++|+|++ |.+||...+.......+.
T Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~  246 (298)
T 3f66_A          183 YYSVHNKTGAKLPVKWMALESL-QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLL  246 (298)
T ss_dssp             GCBC-----CCBCGGGSCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHH
T ss_pred             hhccccccCCCCCccccChHHh-cCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHh
Confidence                         139999954 45568999999999999999999 677887765544444443

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.90  E-value=3.9e-24  Score=174.20  Aligned_cols=148  Identities=26%  Similarity=0.392  Sum_probs=117.1

Q ss_pred             hhhccceeEEEEeeecCceEEEEEE----EccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE--
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCL----NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT--  110 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--  110 (218)
                      .+..++|++.+.||+|+||.||+|.    +..++..||+|.+...  .....+.+.+|+.++++++||||+++++++.  
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   96 (327)
T 3lxl_A           19 IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS--GPDQQRDFQREIQILKALHSDFIVKYRGVSYGP   96 (327)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             hhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC--CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecC
Confidence            3667899999999999999999998    4567899999998643  2334567899999999999999999999886  


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----  146 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----  146 (218)
                      .....++||||+++ +|.+++......                            +++|.+           .++|    
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A           97 GRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL  176 (327)
T ss_dssp             SSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred             CCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEccccccee
Confidence            56779999999966 999988763221                            333322           1111    


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                       ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~ll~g~~p~~~~  233 (327)
T 3lxl_A          177 LPLDKDYYVVREPGQSPIFWYAPESL-SDNIFSRQSDVWSFGVVLYELFTYCDKSCSP  233 (327)
T ss_dssp             CCTTCSEEECSSCCCSCGGGSCHHHH-HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             cccCCccceeeccCCccccccCHHHh-ccCCCChHHhHHHHHHHHHHHHhCCCCCccc
Confidence                             128999954 4555789999999999999999999998654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.90  E-value=5.2e-23  Score=164.84  Aligned_cols=144  Identities=19%  Similarity=0.278  Sum_probs=112.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE-EeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL-TTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~~l  117 (218)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++....    ..+.+.+|+.+++.+.|++++..+..+ ......++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   82 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS----SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc----chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence            4678999999999999999999999999999999986432    224588999999999888766555554 67888999


Q ss_pred             EEecCCCChHHHhhhcccC----------------------------Cccccc--------------ccc----------
Q 041487          118 VFEYLDLDLGSFIRKHTIT----------------------------SIRPHI--------------KEV----------  145 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~----------------------------~~~~~~--------------~~~----------  145 (218)
                      +|||+.++|.+++......                            +++|.+              .++          
T Consensus        83 v~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~  162 (296)
T 3uzp_A           83 VMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  162 (296)
T ss_dssp             EEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             EEEecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccc
Confidence            9999977999988732211                            222221              111          


Q ss_pred             ---------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ---------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ---------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                     ...|+|||. ..+..++.++|||||||++|+|++|+.||...
T Consensus       163 ~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  218 (296)
T 3uzp_A          163 THQHIPYRENKNLTGTARYASINT-HLGIEQSRRDDLESLGYVLMYFNLGSLPWQGL  218 (296)
T ss_dssp             TCCBCCCCCSCCCCSCTTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             cccccccccccccccccccCChhh-hcCCCCCcchhhHHHHHHHHHHHhCCCCCCCc
Confidence                           123999995 45555899999999999999999999999864

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.90  E-value=6.7e-23  Score=164.07  Aligned_cols=145  Identities=19%  Similarity=0.278  Sum_probs=108.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeE-EeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVL-TTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~~  116 (218)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|++......    +.+.+|+.+++.++|++++..+..+ ......+
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV   81 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C----CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc----hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence            3457899999999999999999999999999999987643322    3478899999999887766665554 6888999


Q ss_pred             EEEecCCCChHHHhhhcccC----------------------------Cccccc--------------ccc---------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI--------------KEV---------  145 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~--------------~~~---------  145 (218)
                      ++|||+.++|.+++......                            +++|.+              .++         
T Consensus        82 lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  161 (296)
T 4hgt_A           82 MVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             EEEECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             EEEEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence            99999977999988642211                            222221              111         


Q ss_pred             ----------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ----------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ----------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                      ...|+|||. ..+..++.++|||||||++|+|++|+.||.+.
T Consensus       162 ~~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  218 (296)
T 4hgt_A          162 RTHQHIPYRENKNLTGTARYASINT-HLGIEQSRRDDLESLGYVLMYFNLGSLPWQGL  218 (296)
T ss_dssp             TTCCBCCCCCSCCCCSCGGGCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ccCccCCCCcccccCCCccccchHH-hcCCCCCchhHHHHHHHHHHHHhcCCCCCccc
Confidence                            123899995 45556899999999999999999999999875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.90  E-value=1.8e-23  Score=185.11  Aligned_cols=164  Identities=23%  Similarity=0.376  Sum_probs=124.1

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      ....+..++|++.+.||+|+||.||+|.+...   +..||+|.++.. ......+.+.+|+.+++.++||||+++++++.
T Consensus       383 ~~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~  461 (656)
T 2j0j_A          383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT  461 (656)
T ss_dssp             GGTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST-TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            34456678899999999999999999998643   457999987642 23334578899999999999999999999985


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----  146 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----  146 (218)
                       .+..++||||+++ +|.+++......                            +++|.+           .++|    
T Consensus       462 -~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          462 -ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             -SSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             -cCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCee
Confidence             4568999999986 999988754321                            333322           2222    


Q ss_pred             ---------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhc
Q 041487          147 ---------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFT  200 (218)
Q Consensus       147 ---------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~  200 (218)
                                     ..|+|||.+ .+..++.++|||||||++|+|++ |..||.+.+.......+....
T Consensus       541 ~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~  609 (656)
T 2j0j_A          541 MEDSTYYKASKGKLPIKWMAPESI-NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE  609 (656)
T ss_dssp             CCC----------CCGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTC
T ss_pred             cCCCcceeccCCCCCcceeCHHHh-cCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCC
Confidence                           249999955 45568999999999999999997 999999875555444444433

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=177.48  Aligned_cols=150  Identities=23%  Similarity=0.392  Sum_probs=113.8

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~  114 (218)
                      ..+...+|.+.+.||+|+||.|+. ....+++.||||.+....     .+.+.+|+.+++.+ +||||+++++++.+...
T Consensus        19 ~~i~~~~y~~~~~LG~G~~G~V~~-~~~~~~~~vAvK~~~~~~-----~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~   92 (432)
T 3p23_A           19 VIVGKISFCPKDVLGHGAEGTIVY-RGMFDNRDVAVKRILPEC-----FSFADREVQLLRESDEHPNVIRYFCTEKDRQF   92 (432)
T ss_dssp             EEETTEEEEEEEEEEECGGGCEEE-EEESSSSEEEEEEECTTT-----EEECHHHHHHHHHSCCCTTBCCEEEEEEETTE
T ss_pred             EEEccEEEecCCeeecCcCEEEEE-EEEeCCeEEEEEEECHHH-----HHHHHHHHHHHHhccCCCCcCeEEEEEecCCE
Confidence            334556799999999999999764 334688999999986422     23366899999999 89999999999999999


Q ss_pred             EEEEEecCCCChHHHhhhcccC----------------------------Ccccc----------------ccccC----
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPH----------------IKEVG----  146 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~----------------~~~~g----  146 (218)
                      .|+|||||+++|.+++......                            +++|.                +.++|    
T Consensus        93 ~~lv~E~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~  172 (432)
T 3p23_A           93 QYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK  172 (432)
T ss_dssp             EEEEEECCSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred             EEEEEECCCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence            9999999999999888654321                            22222                22222    


Q ss_pred             -----------------CcccCcccccC--CCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcch
Q 041487          147 -----------------SPYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDH  191 (218)
Q Consensus       147 -----------------~~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~  191 (218)
                                       ..|+|||.+..  ...++.++|||||||++|+|++ |..||.......
T Consensus       173 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~  237 (432)
T 3p23_A          173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ  237 (432)
T ss_dssp             C------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH
T ss_pred             ccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence                             23999996654  3457789999999999999999 999997654333

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.90  E-value=6.6e-24  Score=172.39  Aligned_cols=147  Identities=23%  Similarity=0.376  Sum_probs=113.5

Q ss_pred             hccce-eEEEEeeecCceEEEEEEE----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--
Q 041487           39 KDWNY-KVVEKIGQGVFGEVYKCLN----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--  111 (218)
Q Consensus        39 ~~~~~-~~~~~ig~G~~g~v~~~~~----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--  111 (218)
                      ...+| ++++.||+|+||.||++..    ..+++.||+|+++.. ......+.+.+|+.++++++||||+++++++..  
T Consensus        28 ~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  106 (318)
T 3lxp_A           28 FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD-AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAG  106 (318)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             ecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc-cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCC
Confidence            34444 9999999999999988754    357889999999753 223446778999999999999999999999987  


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC--------------------------Cccccc-----------cccC-------
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEVG-------  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g-------  146 (218)
                      ...+++||||+++ +|.+++......                          ++++.+           .++|       
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~  186 (318)
T 3lxp_A          107 AASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  186 (318)
T ss_dssp             TTEEEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred             CceEEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccc
Confidence            4689999999987 999988764332                          333322           1221       


Q ss_pred             --------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 --------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 --------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                    ..|+|||.+ .+..++.++|||||||++|+|++|+.||...
T Consensus       187 ~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~ll~g~~p~~~~  240 (318)
T 3lxp_A          187 GHEYYRVREDGDSPVFWYAPECL-KEYKFYYASDVWSFGVTLYELLTHCDSSQSP  240 (318)
T ss_dssp             TCSEEEC---CCCCGGGCCHHHH-HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             cccccccccCCCCCceeeChHHh-cCCCCCcHHHHHHHHHHHHHHHhCCCccccc
Confidence                          128999955 4445789999999999999999999999753

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.90  E-value=4.1e-23  Score=165.62  Aligned_cols=141  Identities=27%  Similarity=0.430  Sum_probs=111.9

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--------
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--------  111 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--------  111 (218)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.++..   ....+.+.+|+.+++.++||||+++++++..        
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT---EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM   81 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc---HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence            46799999999999999999999999999999998642   2345678899999999999999999998854        


Q ss_pred             -----CCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC
Q 041487          112 -----GRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG  146 (218)
Q Consensus       112 -----~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g  146 (218)
                           ....++||||+++ +|.+++......                            ++++.+           .++|
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg  161 (303)
T 1zy4_A           82 TAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFG  161 (303)
T ss_dssp             ----CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred             cccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCc
Confidence                 4679999999986 999988643221                            222221           1222


Q ss_pred             --------------------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 --------------------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 --------------------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                                      ..|+|||.+.....++.++|||||||++|+|++   ||..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~  230 (303)
T 1zy4_A          162 LAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST  230 (303)
T ss_dssp             CCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred             chhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC
Confidence                                            239999976655568999999999999999998   5643

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.90  E-value=1.1e-23  Score=171.24  Aligned_cols=154  Identities=25%  Similarity=0.383  Sum_probs=119.2

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCC--CCCeeeeee
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELE--HDNIVRLLD  107 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~--h~~iv~~~~  107 (218)
                      .......++|++.+.||+|+||.||+|.+..+++.||+|.+.......    ...+.+.+|+.+++++.  |+||+++++
T Consensus        36 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~  115 (320)
T 3a99_A           36 KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD  115 (320)
T ss_dssp             ----CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEE
T ss_pred             cccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEE
Confidence            334456788999999999999999999999999999999997654322    23356778999999995  599999999


Q ss_pred             eEEeCCEEEEEEecCC--CChHHHhhhcccC---------------------------Ccccc------------ccccC
Q 041487          108 VLTTGRYVYLVFEYLD--LDLGSFIRKHTIT---------------------------SIRPH------------IKEVG  146 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~--~~L~~~~~~~~~~---------------------------~~~~~------------~~~~g  146 (218)
                      ++...+..+++||++.  ++|.+++......                           ++++.            +.++|
T Consensus       116 ~~~~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg  195 (320)
T 3a99_A          116 WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG  195 (320)
T ss_dssp             EEECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred             EEecCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence            9999999999999997  4888887654321                           22222            22232


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                      ..|+|||.+.....++.++|||||||++|+|++|+.||...
T Consensus       196 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  252 (320)
T 3a99_A          196 SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  252 (320)
T ss_dssp             TCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             cccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh
Confidence                            23999996655554578899999999999999999999753

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.89  E-value=6.4e-24  Score=172.67  Aligned_cols=150  Identities=24%  Similarity=0.352  Sum_probs=116.3

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ........++|++.+.||+|+||.||+|.. .++..||+|.+...... .....+.+|+.+++.++||||+++++++...
T Consensus        22 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   99 (326)
T 3uim_A           22 LRELQVASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTP   99 (326)
T ss_dssp             THHHHTTTTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTBCCCCEEECCS
T ss_pred             HHHHHHHhhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCc-hHHHHHHHHHHHHHhccCCCccceEEEEecC
Confidence            344556788999999999999999999975 46899999998754322 2234689999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------------Cccccc-----------cccC
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPHI-----------KEVG  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~~-----------~~~g  146 (218)
                      ...++||||+++ +|.+++......                                  +++|.+           .++|
T Consensus       100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg  179 (326)
T 3uim_A          100 TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFG  179 (326)
T ss_dssp             SCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCS
T ss_pred             CceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCc
Confidence            999999999987 888887653211                                  222221           2222


Q ss_pred             -------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          147 -------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       147 -------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                                         ..|+|||.+ .+..++.++|||||||++|+|++|+.||.
T Consensus       180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~  236 (326)
T 3uim_A          180 LAKLMDYKDTHVTTAVRGTIGHIAPEYL-STGKSSEKTDVFGYGVMLLELITGQRAFD  236 (326)
T ss_dssp             SCEECCSSSSCEECCCCSCGGGCCHHHH-HHSEECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred             cccccCcccccccccccCCcCccCHHHh-ccCCCCccccchhHHHHHHHHHhCCCccc
Confidence                               239999955 44458999999999999999999999995

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.89  E-value=4.1e-23  Score=170.72  Aligned_cols=152  Identities=15%  Similarity=0.193  Sum_probs=110.4

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccC-----CcEEEEEEeecCCCCC---------CchHHHHHHHHHHhhCCCC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLET-----GKKVAIKMINIQNEPE---------GVPSYLIAGVSLLKELEHD  100 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~-----~~~vaiK~~~~~~~~~---------~~~~~~~~e~~~l~~l~h~  100 (218)
                      ...+..++|++.+.||+|+||.||+|.++.+     ++.||+|++.......         ........|+..++.++||
T Consensus        29 i~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~  108 (364)
T 3op5_A           29 ITDMAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYL  108 (364)
T ss_dssp             EECTTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCC
T ss_pred             eeccCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCC
Confidence            3345567999999999999999999998654     5789999987432100         0012233455566777899


Q ss_pred             CeeeeeeeEEeC----CEEEEEEecCCCChHHHhhhcccC----------------------------Cccccc------
Q 041487          101 NIVRLLDVLTTG----RYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI------  142 (218)
Q Consensus       101 ~iv~~~~~~~~~----~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~------  142 (218)
                      ||+++++++...    ...++||||+.++|.+++......                            +++|.+      
T Consensus       109 ~iv~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~  188 (364)
T 3op5_A          109 GVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYK  188 (364)
T ss_dssp             CSCCEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESS
T ss_pred             CCCeEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecC
Confidence            999999998754    569999999966999988664211                            233221      


Q ss_pred             -------ccc------------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          143 -------KEV------------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       143 -------~~~------------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                             .+|                        | ..|+|||. ..+..++.++|||||||++|+|+||+.||.+.
T Consensus       189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~  264 (364)
T 3op5_A          189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDA-HNGVAPSRRGDLEILGYCMIQWLTGHLPWEDN  264 (364)
T ss_dssp             CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred             CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHH-hCCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence                   122                        2 24999995 45556899999999999999999999999864

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.89  E-value=6.4e-23  Score=167.93  Aligned_cols=150  Identities=25%  Similarity=0.426  Sum_probs=102.5

Q ss_pred             hhhhhhhhccceeEEE-EeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHH-HHHhhCCCCCeeeeeeeE
Q 041487           32 SEQMEKVKDWNYKVVE-KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGV-SLLKELEHDNIVRLLDVL  109 (218)
Q Consensus        32 ~~~~~~~~~~~~~~~~-~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~-~~l~~l~h~~iv~~~~~~  109 (218)
                      .........++|.+.+ .||+|+||.||+|.++.+++.||+|++...       ....+|+ ..++.++||||+++++++
T Consensus        19 p~~~~~~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~e~~~~~~~~~h~~i~~~~~~~   91 (336)
T 3fhr_A           19 PEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-------PKARQEVDHHWQASGGPHIVCILDVY   91 (336)
T ss_dssp             -CCBCSCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-------HHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred             CCCCCccccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-------HHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            3444445678899966 599999999999999999999999998632       1223333 345667999999999998


Q ss_pred             Ee----CCEEEEEEecCCC-ChHHHhhhcccC-----------------------------Ccccc--------------
Q 041487          110 TT----GRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPH--------------  141 (218)
Q Consensus       110 ~~----~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~--------------  141 (218)
                      ..    ...+++||||+++ +|.+++......                             ++++.              
T Consensus        92 ~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~k  171 (336)
T 3fhr_A           92 ENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLK  171 (336)
T ss_dssp             EEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEE
T ss_pred             hhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEE
Confidence            75    5569999999988 999998765321                             22222              


Q ss_pred             ccccCC----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          142 IKEVGS----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       142 ~~~~g~----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                      +.++|.                .|+|||.+ .+..++.++|||||||++|+|++|+.||.....
T Consensus       172 l~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  234 (336)
T 3fhr_A          172 LTDFGFAKETTQNALQTPCYTPYYVAPEVL-GPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTG  234 (336)
T ss_dssp             ECCCTTCEEC-----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             EeccccceeccccccccCCCCcCccChhhh-CCCCCCchhhHHHHHHHHHHHHHCCCCCCCccc
Confidence            223332                29999954 455588899999999999999999999987643

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.89  E-value=8.9e-24  Score=168.94  Aligned_cols=159  Identities=25%  Similarity=0.358  Sum_probs=113.2

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEcc-CC--cEEEEEEeecCCC-CCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLE-TG--KKVAIKMINIQNE-PEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT  111 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~-~~--~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  111 (218)
                      ..+..++|++.+.||+|+||.||+|.+.. ++  ..||+|+++.... .....+.+.+|+.+++.++||||+++++++..
T Consensus        13 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   92 (291)
T 1u46_A           13 CLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT   92 (291)
T ss_dssp             EECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cccchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc
Confidence            34567889999999999999999998643 33  3689999875442 33456788999999999999999999999976


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC-----
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-----  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-----  146 (218)
                      .. .+++|||+++ +|.+++......                            +++|.+           .++|     
T Consensus        93 ~~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  171 (291)
T 1u46_A           93 PP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL  171 (291)
T ss_dssp             SS-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             CC-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence            65 8899999986 999888654211                            333322           1222     


Q ss_pred             ----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          147 ----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       147 ----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                                      ..|+|||.+ .+..++.++||||||+++|+|++ |+.||...+...+...+
T Consensus       172 ~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~  237 (291)
T 1u46_A          172 PQNDDHYVMQEHRKVPFAWCAPESL-KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKI  237 (291)
T ss_dssp             CC-CCEEEC-----CCGGGCCHHHH-HHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHH
T ss_pred             cccccchhhhccCCCCceeeCchhh-cCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHH
Confidence                            139999955 44557899999999999999999 99999887554444433

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.7e-23  Score=170.41  Aligned_cols=151  Identities=28%  Similarity=0.454  Sum_probs=116.0

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEE----ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeee
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLN----LETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDV  108 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~  108 (218)
                      .....+...+|++.+.||+|+||.||+|..    ..+++.||+|.+...  .....+.+.+|+.++++++||||++++++
T Consensus        33 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~  110 (326)
T 2w1i_A           33 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGV  110 (326)
T ss_dssp             ----CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC--CSHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             cCccccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEE
Confidence            334557788899999999999999999984    567899999998642  34446789999999999999999999999


Q ss_pred             EEeC--CEEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC
Q 041487          109 LTTG--RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG  146 (218)
Q Consensus       109 ~~~~--~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g  146 (218)
                      +...  ..+++||||+++ +|.+++......                            +++|.+           .++|
T Consensus       111 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg  190 (326)
T 2w1i_A          111 CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFG  190 (326)
T ss_dssp             ECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCT
T ss_pred             EEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCc
Confidence            8654  378999999987 999998764321                            233322           1121


Q ss_pred             ---------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 ---------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 ---------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                           ..|+|||.+. +..++.++||||||+++|+|+||..||..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~il~el~tg~~~~~~  250 (326)
T 2w1i_A          191 LTKVLPQDKEYYKVKEPGESPIFWYAPESLT-ESKFSVASDVWSFGVVLYELFTYIEKSKS  250 (326)
T ss_dssp             TCEECCSSCSEEECSSCCSCCGGGCCHHHHH-HCEEEHHHHHHHHHHHHHHHHHTTCGGGS
T ss_pred             chhhccccccccccccCCCCceeEECchhhc-CCCCCchhhHHHHHHHHHHHHhcCCCCCC
Confidence                                 1299999654 44578999999999999999999999864

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.89  E-value=1.5e-23  Score=173.69  Aligned_cols=148  Identities=17%  Similarity=0.175  Sum_probs=103.4

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhC--CCCCeeeee-------eeE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKEL--EHDNIVRLL-------DVL  109 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l--~h~~iv~~~-------~~~  109 (218)
                      ...|++.+.||+|+||.||+|.+..+++.||+|++..... .....+.+.+|+.+++.+  +|||+++++       +++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            3459999999999999999999999999999999986543 234456777885544444  699988755       444


Q ss_pred             EeC-----------------CEEEEEEecCCCChHHHhhhcccC----------------------------------Cc
Q 041487          110 TTG-----------------RYVYLVFEYLDLDLGSFIRKHTIT----------------------------------SI  138 (218)
Q Consensus       110 ~~~-----------------~~~~lv~E~~~~~L~~~~~~~~~~----------------------------------~~  138 (218)
                      ...                 ..+|+||||++++|.+++......                                  ++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDi  220 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHF  220 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcC
Confidence            322                 348999999999999988753110                                  33


Q ss_pred             cccc-----------ccc---------------CCcccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          139 RPHI-----------KEV---------------GSPYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       139 ~~~~-----------~~~---------------g~~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      +|.+           .+|               +..|+|||.+... ..++.++|||||||++|+|++|+.||...
T Consensus       221 kp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  296 (371)
T 3q60_A          221 TPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLV  296 (371)
T ss_dssp             SGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBC
T ss_pred             CHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            3322           122               3449999966431 55899999999999999999999999876

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=169.88  Aligned_cols=152  Identities=28%  Similarity=0.391  Sum_probs=107.3

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhC----CCCCeeeee
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKEL----EHDNIVRLL  106 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l----~h~~iv~~~  106 (218)
                      ..+...++|++.+.||+|+||.||+|.+..+++.||+|++.......    .....+.+|+.+++++    +|+||++++
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            34556788999999999999999999998999999999997543221    2234566788888888    899999999


Q ss_pred             eeEEeCCEEEEEEec-CCC-ChHHHhhhcccC---------------------------Ccccc------------cccc
Q 041487          107 DVLTTGRYVYLVFEY-LDL-DLGSFIRKHTIT---------------------------SIRPH------------IKEV  145 (218)
Q Consensus       107 ~~~~~~~~~~lv~E~-~~~-~L~~~~~~~~~~---------------------------~~~~~------------~~~~  145 (218)
                      +++...+..+++||+ +.+ +|.+++......                           ++++.            +.++
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~df  184 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDF  184 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEc
Confidence            999999999999999 554 888888654321                           22222            1222


Q ss_pred             C----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          146 G----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       146 g----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                      |                ..|+|||.+......+.++|||||||++|+|++|+.||..
T Consensus       185 g~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  241 (312)
T 2iwi_A          185 GSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFER  241 (312)
T ss_dssp             SSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             chhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCC
Confidence            2                2399999665555455689999999999999999999975

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.89  E-value=7.7e-22  Score=158.37  Aligned_cols=144  Identities=23%  Similarity=0.414  Sum_probs=108.3

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhh--CCCCCeeeeeeeEEe---
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE--LEHDNIVRLLDVLTT---  111 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~---  111 (218)
                      ....++|++.+.||+|+||.||+|.+  ++..||+|++...     ....+.+|.+++..  ++||||+++++++..   
T Consensus         4 ~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~   76 (301)
T 3q4u_A            4 RTVARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR-----DEKSWFRETELYNTVMLRHENILGFIASDMTSRH   76 (301)
T ss_dssp             CCCGGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG-----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEET
T ss_pred             ccccCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc-----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccC
Confidence            45678999999999999999999987  7899999998632     34556667777666  799999999998653   


Q ss_pred             -CCEEEEEEecCCC-ChHHHhhhcccC----------------------------------Cccccc-----------cc
Q 041487          112 -GRYVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPHI-----------KE  144 (218)
Q Consensus       112 -~~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~~-----------~~  144 (218)
                       ...+++||||+++ +|.+++......                                  +++|.+           .+
T Consensus        77 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~D  156 (301)
T 3q4u_A           77 SSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIAD  156 (301)
T ss_dssp             TEEEEEEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECC
T ss_pred             CCceeEEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEee
Confidence             3569999999987 998887542211                                  222221           22


Q ss_pred             cC----------------------CcccCcccccCCC-----CCCCcchHHHHHHHHHHHHhC----------CCCCCCC
Q 041487          145 VG----------------------SPYKAPESRIRSS-----VYSTPHDVWAVGCIFAEMVSG----------KPLFPCG  187 (218)
Q Consensus       145 ~g----------------------~~y~aPE~~~~~~-----~~~~~~DiwSlG~~l~~l~tg----------~~Pf~~~  187 (218)
                      +|                      ..|+|||.+....     .++.++|||||||++|+|++|          +.||...
T Consensus       157 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~  236 (301)
T 3q4u_A          157 LGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV  236 (301)
T ss_dssp             CTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred             CCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccccc
Confidence            22                      2399999655443     234689999999999999999          8999764

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.88  E-value=3.4e-22  Score=171.08  Aligned_cols=147  Identities=22%  Similarity=0.331  Sum_probs=115.0

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC-CCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-DNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|++.+.||+|+||.||+|.+..+++.||||++......    ..+.+|+.+++.+.| +++..+..++......+
T Consensus         4 ~i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~   79 (483)
T 3sv0_A            4 RVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNV   79 (483)
T ss_dssp             EETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEE
T ss_pred             CcCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEE
Confidence            3467899999999999999999999999999999988754322    347889999999976 56666666778889999


Q ss_pred             EEEecCCCChHHHhhhcccC----------------------------Cccccc--------------cccC--------
Q 041487          117 LVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI--------------KEVG--------  146 (218)
Q Consensus       117 lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~--------------~~~g--------  146 (218)
                      +||||+.++|.+++......                            ++++.+              .+||        
T Consensus        80 lvme~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~  159 (483)
T 3sv0_A           80 LVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT  159 (483)
T ss_dssp             EEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             EEEECCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence            99999977999988642211                            333322              1222        


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK  189 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~  189 (218)
                                       ..|+|||. ..+..++.++|||||||++|+|++|+.||.+...
T Consensus       160 ~~~~~~~~~~~~~~~gt~~Y~aPE~-~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~  218 (483)
T 3sv0_A          160 STHQHIPYRENKNLTGTARYASVNT-HLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKA  218 (483)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred             ccccccccccccccCCCccccCHHH-hcCCCCChHHHHHHHHHHHHHHHhCCCCCccccc
Confidence                             23899995 5555689999999999999999999999987643

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.88  E-value=2.1e-22  Score=162.26  Aligned_cols=140  Identities=25%  Similarity=0.412  Sum_probs=110.8

Q ss_pred             eEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC--CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      ...+.||+|+||.||+|..  ++..||+|.+....  ......+.+.+|+.+++.++||||+++++++...+..+++|||
T Consensus        34 ~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  111 (307)
T 2nru_A           34 VGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVY  111 (307)
T ss_dssp             TTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             ccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEe
Confidence            3448999999999999986  68899999987543  2345577899999999999999999999999999999999999


Q ss_pred             CCC-ChHHHhhhcccC------------------------------Cccccc-----------cccC-------------
Q 041487          122 LDL-DLGSFIRKHTIT------------------------------SIRPHI-----------KEVG-------------  146 (218)
Q Consensus       122 ~~~-~L~~~~~~~~~~------------------------------~~~~~~-----------~~~g-------------  146 (218)
                      +++ +|.+++......                              +++|.+           .++|             
T Consensus       112 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  191 (307)
T 2nru_A          112 MPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVM  191 (307)
T ss_dssp             CTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEE
T ss_pred             cCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeeccccccccccccccc
Confidence            976 998887642210                              222221           1221             


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                             ..|+|||.+ .+. ++.++||||||+++|+|++|+.||...
T Consensus       192 ~~~~~g~~~y~aPE~~-~~~-~~~~~Dv~slG~il~~l~~g~~p~~~~  237 (307)
T 2nru_A          192 TSRIVGTTAYMAPEAL-RGE-ITPKSDIYSFGVVLLEIITGLPAVDEH  237 (307)
T ss_dssp             CSSCCSCGGGCCHHHH-TTE-ECTHHHHHHHHHHHHHHHHCCCSBCTT
T ss_pred             ccccCCCcCcCChHHh-cCC-CCccchhHHHHHHHHHHHHCCCCcccC
Confidence                   239999954 333 789999999999999999999999876

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.88  E-value=3e-22  Score=169.40  Aligned_cols=144  Identities=26%  Similarity=0.421  Sum_probs=111.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..+.|.+.+.||+|+||+||.+. ..+++.||||.+...     ..+.+.+|+.+++.+ +||||+++++++.....+++
T Consensus        13 l~~~~~~~~~LG~G~~g~V~~~~-~~~g~~vAvK~~~~~-----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~l   86 (434)
T 2rio_A           13 LKNLVVSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLID-----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYI   86 (434)
T ss_dssp             CSSCEEEEEEEEECSTTCEEEEE-ESSSSEEEEEEEEGG-----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred             hhheeeccCeEeeCCCeEEEEEE-EECCeEEEEEEEcHH-----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEE
Confidence            34556778999999999998753 467999999998642     245678999999886 89999999999999999999


Q ss_pred             EEecCCCChHHHhhhcccC----------------------------------Ccccc----------------------
Q 041487          118 VFEYLDLDLGSFIRKHTIT----------------------------------SIRPH----------------------  141 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~----------------------------------~~~~~----------------------  141 (218)
                      |||||+++|.+++......                                  +++|.                      
T Consensus        87 v~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~  166 (434)
T 2rio_A           87 ALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLR  166 (434)
T ss_dssp             EECCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCE
T ss_pred             EEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceE
Confidence            9999998998887653211                                  22221                      


Q ss_pred             --ccccC----------------------CcccCcccccC------CCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC
Q 041487          142 --IKEVG----------------------SPYKAPESRIR------SSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK  188 (218)
Q Consensus       142 --~~~~g----------------------~~y~aPE~~~~------~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~  188 (218)
                        +.++|                      ..|+|||.+..      ...++.++|||||||++|+|+| |+.||....
T Consensus       167 ~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~  244 (434)
T 2rio_A          167 ILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY  244 (434)
T ss_dssp             EEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT
T ss_pred             EEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch
Confidence              22222                      23999996644      2558999999999999999999 999997653

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=6.3e-21  Score=155.36  Aligned_cols=146  Identities=21%  Similarity=0.382  Sum_probs=107.8

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC--CCCCeeeeeeeEEe
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL--EHDNIVRLLDVLTT  111 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~  111 (218)
                      .......++|++.+.||+|+||.||+|.+  .+..||+|++...     ......+|.+++...  +||||+++++++..
T Consensus        30 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~  102 (337)
T 3mdy_A           30 LVQRTIAKQIQMVKQIGKGRYGEVWMGKW--RGEKVAVKVFFTT-----EEASWFRETEIYQTVLMRHENILGFIAADIK  102 (337)
T ss_dssp             HHHTTHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEEEGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred             ccccccccceEEEeEeecCCCeEEEEEEE--CCceEEEEEEecc-----ccchhhhHHHHHHHHhhcCCCeeeEEEEEcc
Confidence            34455678999999999999999999987  4899999998632     223445555555554  89999999999987


Q ss_pred             C----CEEEEEEecCCC-ChHHHhhhcccC----------------------------------Cccccc----------
Q 041487          112 G----RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPHI----------  142 (218)
Q Consensus       112 ~----~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~~----------  142 (218)
                      .    ..+++||||+++ +|.+++......                                  +++|.+          
T Consensus       103 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k  182 (337)
T 3mdy_A          103 GTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCC  182 (337)
T ss_dssp             SCGGGCEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEE
T ss_pred             CCCCCCceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEE
Confidence            7    789999999987 998887543211                                  222221          


Q ss_pred             -cccC----------------------CcccCcccccCCCCCCCc------chHHHHHHHHHHHHhC----------CCC
Q 041487          143 -KEVG----------------------SPYKAPESRIRSSVYSTP------HDVWAVGCIFAEMVSG----------KPL  183 (218)
Q Consensus       143 -~~~g----------------------~~y~aPE~~~~~~~~~~~------~DiwSlG~~l~~l~tg----------~~P  183 (218)
                       .+||                      ..|+|||.+... .....      +|||||||++|+|+||          +.|
T Consensus       183 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p  261 (337)
T 3mdy_A          183 IADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDES-LNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLP  261 (337)
T ss_dssp             ECCCTTCEECC---------CCSSCSCGGGCCHHHHTTC-CCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred             EEeCCCceeeccccccccCCCCCCccCcceeChhhcccc-cCCccccCccccchHHHHHHHHHHHhccCccccccccccc
Confidence             1222                      239999965443 34444      9999999999999999          777


Q ss_pred             CCCC
Q 041487          184 FPCG  187 (218)
Q Consensus       184 f~~~  187 (218)
                      |...
T Consensus       262 ~~~~  265 (337)
T 3mdy_A          262 YHDL  265 (337)
T ss_dssp             TTTT
T ss_pred             Hhhh
Confidence            7654

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.87  E-value=7.2e-21  Score=155.41  Aligned_cols=146  Identities=23%  Similarity=0.378  Sum_probs=111.9

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhh--CCCCCeeeeeeeEEeC
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE--LEHDNIVRLLDVLTTG  112 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~  112 (218)
                      ......++|++.+.||+|+||.||+|.+  +++.||+|++...     ..+.+.+|++++..  ++||||+++++++...
T Consensus        36 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~  108 (342)
T 1b6c_B           36 VQRTIARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKD  108 (342)
T ss_dssp             HHHHHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG-----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECC
T ss_pred             ecccccccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCch-----hHHHHHHHHHHHHHhhcCCCcEEEEEeeeccc
Confidence            3445678899999999999999999987  6899999998532     34567888888887  6899999999999876


Q ss_pred             C----EEEEEEecCCC-ChHHHhhhcccC----------------------------------Cccccc-----------
Q 041487          113 R----YVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPHI-----------  142 (218)
Q Consensus       113 ~----~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~~-----------  142 (218)
                      .    .+++||||+++ +|.+++......                                  +++|.+           
T Consensus       109 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL  188 (342)
T 1b6c_B          109 NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  188 (342)
T ss_dssp             CSSCCCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEE
T ss_pred             CCccceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEE
Confidence            5    89999999987 999887653211                                  222221           


Q ss_pred             cccC----------------------CcccCcccccCCCC-----CCCcchHHHHHHHHHHHHhC----------CCCCC
Q 041487          143 KEVG----------------------SPYKAPESRIRSSV-----YSTPHDVWAVGCIFAEMVSG----------KPLFP  185 (218)
Q Consensus       143 ~~~g----------------------~~y~aPE~~~~~~~-----~~~~~DiwSlG~~l~~l~tg----------~~Pf~  185 (218)
                      .++|                      ..|+|||.+.....     ++.++|||||||++|+|+||          +.||.
T Consensus       189 ~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~  268 (342)
T 1b6c_B          189 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY  268 (342)
T ss_dssp             CCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred             EECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCcc
Confidence            1222                      23999996554322     23689999999999999999          78997


Q ss_pred             CC
Q 041487          186 CG  187 (218)
Q Consensus       186 ~~  187 (218)
                      ..
T Consensus       269 ~~  270 (342)
T 1b6c_B          269 DL  270 (342)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.86  E-value=5.7e-23  Score=180.88  Aligned_cols=147  Identities=25%  Similarity=0.429  Sum_probs=114.0

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------  111 (218)
                      ...++|++.+.||+|+||.||+|.+..++..||+|.++.. ......+.+.+|+.++++++||||+++++++..      
T Consensus        11 ~~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~-~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~   89 (676)
T 3qa8_A           11 QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE-LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAP   89 (676)
T ss_dssp             ------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSC-CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCT
T ss_pred             CCCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccC
Confidence            3458899999999999999999999889999999998643 233446778999999999999999999998754      


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC------------------------------Ccccc--------------ccccC
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT------------------------------SIRPH--------------IKEVG  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~------------------------------~~~~~--------------~~~~g  146 (218)
                      ....++||||+++ +|.+++......                              +++|.              +.++|
T Consensus        90 ~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           90 NDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             TSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             CCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence            6778999999976 999988764310                              22222              12222


Q ss_pred             -----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 -----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 -----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                       ..|+|||. ..+..++.++|||||||++|+|++|+.||..
T Consensus       170 ~a~~~~~~~~~~~~~gt~~Y~APE~-l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~  225 (676)
T 3qa8_A          170 YAKELDQGELCTEFVGTLQYLAPEL-LEQKKYTVTVDYWSFGTLAFECITGFRPFLP  225 (676)
T ss_dssp             CCCBTTSCCCCCCCCSCCTTCSSCS-SCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccccccccccccCCcccCChHH-hccCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence                             23899995 4556689999999999999999999999965

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=4.9e-22  Score=176.78  Aligned_cols=147  Identities=21%  Similarity=0.337  Sum_probs=111.9

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEcc-CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE--
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLE-TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY--  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--  114 (218)
                      +..++|++.+.||+|+||.||+|.+.. +++.||+|.+... ......+.+.+|+.++++++||||+++++++...+.  
T Consensus        77 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  155 (681)
T 2pzi_A           77 IVAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS-GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHG  155 (681)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS-CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTS
T ss_pred             EeCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc-CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCC
Confidence            456889999999999999999999976 7899999998642 223345678899999999999999999999976544  


Q ss_pred             ---EEEEEecCCC-ChHHHhhhccc-------------------------CCccccc----------cccC---------
Q 041487          115 ---VYLVFEYLDL-DLGSFIRKHTI-------------------------TSIRPHI----------KEVG---------  146 (218)
Q Consensus       115 ---~~lv~E~~~~-~L~~~~~~~~~-------------------------~~~~~~~----------~~~g---------  146 (218)
                         .|+||||+++ +|.+++.....                         .+++|.+          .+||         
T Consensus       156 ~~~~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~  235 (681)
T 2pzi_A          156 DPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEEQLKLIDLGAVSRINSFG  235 (681)
T ss_dssp             CEEEEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSCEEECCCTTCEETTCCS
T ss_pred             CceeEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCCcEEEEecccchhcccCC
Confidence               7999999987 77766543111                         1344432          2232         


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                           ..|+|||.+. +. ++.++|||||||++|+|++|.+||.+.
T Consensus       236 ~~~gt~~y~aPE~~~-~~-~~~~sDi~slG~~l~~l~~g~~~~~~~  279 (681)
T 2pzi_A          236 YLYGTPGFQAPEIVR-TG-PTVATDIYTVGRTLAALTLDLPTRNGR  279 (681)
T ss_dssp             CCCCCTTTSCTTHHH-HC-SCHHHHHHHHHHHHHHHHSCCCEETTE
T ss_pred             ccCCCccccCHHHHc-CC-CCCceehhhhHHHHHHHHhCCCCCccc
Confidence                 2399999654 33 488999999999999999999998764

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.86  E-value=2.9e-22  Score=163.44  Aligned_cols=145  Identities=26%  Similarity=0.330  Sum_probs=103.7

Q ss_pred             hhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHH--HhhCCCCCeeeeeeeEE-
Q 041487           34 QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSL--LKELEHDNIVRLLDVLT-  110 (218)
Q Consensus        34 ~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~--l~~l~h~~iv~~~~~~~-  110 (218)
                      ....+..++|++.+.||+|+||.||+|..  +++.||+|++...     ..+.+..|.++  +..++||||+++++.+. 
T Consensus         6 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~   78 (336)
T 3g2f_A            6 SEPSLDLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFA-----NRQNFINEKNIYRVPLMEHDNIARFIVGDER   78 (336)
T ss_dssp             ---CCCTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred             cCCCcChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeecc-----chhhHHHHHHHHHHHhccCcchhhheecccc
Confidence            34557789999999999999999999976  7899999998643     22344445544  44579999999998653 


Q ss_pred             ----eCCEEEEEEecCCC-ChHHHhhhcccC-----------------------------------Cccccc--------
Q 041487          111 ----TGRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------------SIRPHI--------  142 (218)
Q Consensus       111 ----~~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------------~~~~~~--------  142 (218)
                          ....+++||||+++ +|.+++......                                   +++|.+        
T Consensus        79 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~  158 (336)
T 3g2f_A           79 VTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGT  158 (336)
T ss_dssp             ECTTSCEEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSC
T ss_pred             cccCCCceEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCc
Confidence                33468999999976 998887543221                                   222221        


Q ss_pred             ---cccC--------------------------CcccCcccccCC------CCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          143 ---KEVG--------------------------SPYKAPESRIRS------SVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       143 ---~~~g--------------------------~~y~aPE~~~~~------~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                         .+||                          ..|+|||.+...      ..++.++|||||||++|+|++|+.||.
T Consensus       159 ~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~  236 (336)
T 3g2f_A          159 CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLF  236 (336)
T ss_dssp             EEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGS
T ss_pred             EEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCC
Confidence               2222                          249999965442      345678999999999999999976653

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.86  E-value=1.2e-20  Score=151.84  Aligned_cols=142  Identities=26%  Similarity=0.381  Sum_probs=108.3

Q ss_pred             hhccceeEE-EEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHH-hhCCCCCeeeeeeeEEe----
Q 041487           38 VKDWNYKVV-EKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLL-KELEHDNIVRLLDVLTT----  111 (218)
Q Consensus        38 ~~~~~~~~~-~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~~~~~~----  111 (218)
                      ...++|.+. +.||+|+||.||+|.++.+++.||+|+++.       ...+.+|+.++ +..+||||+++++++..    
T Consensus        14 ~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~   86 (299)
T 3m2w_A           14 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHIVRIVDVYENLYAG   86 (299)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred             ccccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCC
Confidence            346778887 789999999999999999999999999863       24577888887 55599999999999976    


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC-----------------------------CccccccccCC----------cccC
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHIKEVGS----------PYKA  151 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~~~~g~----------~y~a  151 (218)
                      ...+++||||+++ +|.+++......                             +++|.+..+..          .|-.
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~  166 (299)
T 3m2w_A           87 RKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF  166 (299)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred             CceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence            7789999999987 999998765321                             33443322111          0111


Q ss_pred             cccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          152 PESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       152 PE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                      .+ ...+..++.++|||||||++|+|++|+.||...
T Consensus       167 a~-~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  201 (299)
T 3m2w_A          167 AK-ETTGEKYDKSCDMWSLGVIMYILLCGYPPFYSN  201 (299)
T ss_dssp             CE-ECTTCGGGGHHHHHHHHHHHHHHHHSSCSCCC-
T ss_pred             cc-ccccccCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            12 223445889999999999999999999999764

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.82  E-value=1.4e-20  Score=158.17  Aligned_cols=147  Identities=15%  Similarity=0.164  Sum_probs=104.3

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCC-CCeeee---------e---
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEH-DNIVRL---------L---  106 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h-~~iv~~---------~---  106 (218)
                      ..|...+.||+|+||.||+|.+..+++.||||++.... ......+.+.+|+.+++.+.| .+...+         .   
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence            45888999999999999999999999999999987433 333456789999999999977 221111         1   


Q ss_pred             ---------eeEEe-----CCEEEEEEecCCCChHHHhhhcc------c----------------------------CCc
Q 041487          107 ---------DVLTT-----GRYVYLVFEYLDLDLGSFIRKHT------I----------------------------TSI  138 (218)
Q Consensus       107 ---------~~~~~-----~~~~~lv~E~~~~~L~~~~~~~~------~----------------------------~~~  138 (218)
                               ..+..     ....+++|+.+.++|.+++....      .                            .|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDi  237 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYL  237 (413)
T ss_dssp             ECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             ccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCc
Confidence                     11111     23478999999889988874210      0                            044


Q ss_pred             cccc-----------ccc--------------CCcccCccccc---------CCCCCCCcchHHHHHHHHHHHHhCCCCC
Q 041487          139 RPHI-----------KEV--------------GSPYKAPESRI---------RSSVYSTPHDVWAVGCIFAEMVSGKPLF  184 (218)
Q Consensus       139 ~~~~-----------~~~--------------g~~y~aPE~~~---------~~~~~~~~~DiwSlG~~l~~l~tg~~Pf  184 (218)
                      +|.+           .+|              |..|+|||.+.         ....++.++|||||||++|+|++|+.||
T Consensus       238 Kp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf  317 (413)
T 3dzo_A          238 RPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPN  317 (413)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            4432           222              34599999663         4445788999999999999999999999


Q ss_pred             CCC
Q 041487          185 PCG  187 (218)
Q Consensus       185 ~~~  187 (218)
                      ...
T Consensus       318 ~~~  320 (413)
T 3dzo_A          318 TDD  320 (413)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            876

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.81  E-value=6e-21  Score=155.93  Aligned_cols=146  Identities=18%  Similarity=0.206  Sum_probs=105.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC------CCCchHHHHHHHHHHhhCC---------CCC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE------PEGVPSYLIAGVSLLKELE---------HDN  101 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~l~~l~---------h~~  101 (218)
                      .+..++|++.+.||+|+||.||+|++  +++.||+|+++....      .....+.+.+|+.+++.++         |||
T Consensus        16 ~~~~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~n   93 (336)
T 2vuw_A           16 CLPTEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEG   93 (336)
T ss_dssp             HSCHHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCC
T ss_pred             hcccccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCc
Confidence            45578899999999999999999987  789999999986542      2334578899999998886         666


Q ss_pred             eeeeeee-----------------EEe-------------CCEEEEEEecCCC-ChHHHhhhcccC--------------
Q 041487          102 IVRLLDV-----------------LTT-------------GRYVYLVFEYLDL-DLGSFIRKHTIT--------------  136 (218)
Q Consensus       102 iv~~~~~-----------------~~~-------------~~~~~lv~E~~~~-~L~~~~~~~~~~--------------  136 (218)
                      ++++.++                 +..             ...+|+||||+++ ++.+.+......              
T Consensus        94 iv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           94 FIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             BCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            6666554                 332             6789999999965 344443221111              


Q ss_pred             -------------Cc-------------------------------cccccccCCc-------------ccCcccccCCC
Q 041487          137 -------------SI-------------------------------RPHIKEVGSP-------------YKAPESRIRSS  159 (218)
Q Consensus       137 -------------~~-------------------------------~~~~~~~g~~-------------y~aPE~~~~~~  159 (218)
                                   ++                               ..++.+||.+             |+|||.+. +.
T Consensus       174 L~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~-g~  252 (336)
T 2vuw_A          174 LAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFT-GD  252 (336)
T ss_dssp             HHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGC-CC
T ss_pred             HHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhc-CC
Confidence                         22                               2333444432             99999554 44


Q ss_pred             CCCCcchHHHHHHH-HHHHHhCCCCCCC
Q 041487          160 VYSTPHDVWAVGCI-FAEMVSGKPLFPC  186 (218)
Q Consensus       160 ~~~~~~DiwSlG~~-l~~l~tg~~Pf~~  186 (218)
                      . +.++||||++++ .+++++|..||..
T Consensus       253 ~-~~~~Diwsl~~~~~~~~~~g~~p~~~  279 (336)
T 2vuw_A          253 G-DYQFDIYRLMKKENNNRWGEYHPYSN  279 (336)
T ss_dssp             S-SHHHHHHHHHHHHHTTCTTSCCTHHH
T ss_pred             C-ccceehhhhhCCCCcccccccCCCcc
Confidence            3 889999998877 7778889999954

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.53  E-value=1.6e-15  Score=132.22  Aligned_cols=133  Identities=13%  Similarity=-0.037  Sum_probs=81.9

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC--------CCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEE
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP--------EGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~  116 (218)
                      ....+.|++|....+...-.|+.+++|++.+....        ....+.+.+|+++|+++ .|+||+++++++.++..+|
T Consensus       239 ~~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~y  318 (569)
T 4azs_A          239 QNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGW  318 (569)
T ss_dssp             ECC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEE
T ss_pred             hhccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEE
Confidence            34456677776666666667899999999865321        12345689999999999 7999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC------------------------Cccccc-----------cccCCc------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT------------------------SIRPHI-----------KEVGSP------------  148 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~------------------------~~~~~~-----------~~~g~~------------  148 (218)
                      |||||++| +|.+++...+..                        |++|.+           .+||.+            
T Consensus       319 LVMEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t  398 (569)
T 4azs_A          319 LVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTN  398 (569)
T ss_dssp             EEEECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHH
T ss_pred             EEEecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccC
Confidence            99999999 999999876543                        555543           456543            


Q ss_pred             ------ccCcccccCCCCCCCcchHHHHHHHHHHHHhC
Q 041487          149 ------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG  180 (218)
Q Consensus       149 ------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg  180 (218)
                            |+|||.+ .+. +...+|+||+|++++.+.++
T Consensus       399 ~vGTp~YmAPE~l-~g~-~~~~~d~~s~g~~~~~l~~~  434 (569)
T 4azs_A          399 LVQSFFVFVNELF-AEN-KSWNGFWRSAPVHPFNLPQP  434 (569)
T ss_dssp             HHHHHHHHHHHHC-------------------CCCCTT
T ss_pred             ceechhhccHHHh-CCC-CCCcccccccccchhhhccc
Confidence                  9999955 333 67789999999987776444

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.32  E-value=1.2e-12  Score=113.33  Aligned_cols=138  Identities=14%  Similarity=0.042  Sum_probs=93.6

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC------CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE------GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~------~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .+.||+|+||.||+|.  ..+..+++|.........      ...+++.+|+.++++++||||+++..++......|+||
T Consensus       341 ~~~LG~G~fg~Vy~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          341 EHLIGKGAEADIKRDS--YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             -------CCEEEEEEE--CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCEEeeCCCEEEEEEE--ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            5689999999999994  467889999875432221      11355899999999999999996666666677789999


Q ss_pred             ecCCC-ChHHHhhhccc-------------------CCccc---------cccccCC-----------------------
Q 041487          120 EYLDL-DLGSFIRKHTI-------------------TSIRP---------HIKEVGS-----------------------  147 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~-------------------~~~~~---------~~~~~g~-----------------------  147 (218)
                      ||+++ +|.+++.....                   .|++|         ++.+||.                       
T Consensus       419 E~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~G  498 (540)
T 3en9_A          419 SYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDKDLYIIDFGLGKISNLDEDKAVDLIVFKKAVLS  498 (540)
T ss_dssp             ECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESSSEEECCCTTCEECCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECCeEEEEECccCEECCCccccccchhhhhhhhcC
Confidence            99985 99888764100                   13333         3334443                       


Q ss_pred             --cccCcccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCC
Q 041487          148 --PYKAPESRIRS-SVYSTPHDVWAVGCIFAEMVSGKPLFP  185 (218)
Q Consensus       148 --~y~aPE~~~~~-~~~~~~~DiwSlG~~l~~l~tg~~Pf~  185 (218)
                        .|+|||.+... ..|+...|+||..+-..+-..++.+|.
T Consensus       499 T~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          499 THHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             CCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence              27899965441 337788999999998888888877763

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.90  E-value=4e-09  Score=83.97  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----------------CchHHHHHHHHHHhhCCCCCeeeeeee
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----------------GVPSYLIAGVSLLKELEHDNIVRLLDV  108 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----------------~~~~~~~~e~~~l~~l~h~~iv~~~~~  108 (218)
                      +.+.||+|+||.||+|.+ .+++.||+|+++......                .....+.+|+.++++++  | ++++++
T Consensus        94 ~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~  169 (282)
T 1zar_A           94 IGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKV  169 (282)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCE
T ss_pred             ecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeE
Confidence            449999999999999998 889999999996432211                12456889999999998  4 666665


Q ss_pred             EEeCCEEEEEEecCCC-ChHH
Q 041487          109 LTTGRYVYLVFEYLDL-DLGS  128 (218)
Q Consensus       109 ~~~~~~~~lv~E~~~~-~L~~  128 (218)
                      +.. +..++||||+++ +|.+
T Consensus       170 ~~~-~~~~lvmE~~~g~~L~~  189 (282)
T 1zar_A          170 YAW-EGNAVLMELIDAKELYR  189 (282)
T ss_dssp             EEE-ETTEEEEECCCCEEGGG
T ss_pred             Eec-cceEEEEEecCCCcHHH
Confidence            533 456999999987 8876

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.60  E-value=1.3e-07  Score=74.15  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=60.2

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcE--EEEEEeecCCCCCC----------------------chHHHHHHHHHHhhCC
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKK--VAIKMINIQNEPEG----------------------VPSYLIAGVSLLKELE   98 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~--vaiK~~~~~~~~~~----------------------~~~~~~~e~~~l~~l~   98 (218)
                      |.+.+.||+|+||.||+|.+..+|..  ||||+++.....-.                      ....+.+|+..+.++.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999998778988  99999764321100                      0136788999999998


Q ss_pred             CCCe--eeeeeeEEeCCEEEEEEecCCC------ChHHHh
Q 041487           99 HDNI--VRLLDVLTTGRYVYLVFEYLDL------DLGSFI  130 (218)
Q Consensus        99 h~~i--v~~~~~~~~~~~~~lv~E~~~~------~L~~~~  130 (218)
                      |+++  +.+++.    ...++||||++.      .|.++.
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~  164 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELG  164 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHG
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHh
Confidence            7754  333332    346899999952      566554

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.23  E-value=5e-07  Score=74.83  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=51.7

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC------------CCchHH--------HHHHHHHHhhCCCCCe
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP------------EGVPSY--------LIAGVSLLKELEHDNI  102 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~------------~~~~~~--------~~~e~~~l~~l~h~~i  102 (218)
                      |.+.+.||.|++|.||+|.+ .+|+.||||+++.....            ......        ..+|...+.++.+.++
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d-~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVAD-EKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEEC-TTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEecCEeeeCCceEEEEEEC-CCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            89999999999999999987 46999999998643211            000111        1245555666644333


Q ss_pred             eeeeeeEEeCCEEEEEEecCCC-ChHH
Q 041487          103 VRLLDVLTTGRYVYLVFEYLDL-DLGS  128 (218)
Q Consensus       103 v~~~~~~~~~~~~~lv~E~~~~-~L~~  128 (218)
                      .-...+....  .++||||+++ .|.+
T Consensus       176 ~vp~p~~~~~--~~LVME~i~G~~L~~  200 (397)
T 4gyi_A          176 PVPEPIAQSR--HTIVMSLVDALPMRQ  200 (397)
T ss_dssp             SCCCEEEEET--TEEEEECCSCEEGGG
T ss_pred             CCCeeeeccC--ceEEEEecCCccHhh
Confidence            2222122222  3799999987 5544

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.88  E-value=9.3e-05  Score=57.46  Aligned_cols=86  Identities=13%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..+|++...++.|+.+.||++..  .+..+++|..+.....  ....+.+|+.+++.+ .+..++++++++...+..|+|
T Consensus        13 l~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~--~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv   88 (263)
T 3tm0_A           13 IEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKG--TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL   88 (263)
T ss_dssp             HTTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTT--STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             hccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCC--CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence            35799999999999999999974  4789999998743211  124588999999988 467788999999999999999


Q ss_pred             EecCCC-ChHHH
Q 041487          119 FEYLDL-DLGSF  129 (218)
Q Consensus       119 ~E~~~~-~L~~~  129 (218)
                      ||+++| ++.+.
T Consensus        89 ~e~i~G~~l~~~  100 (263)
T 3tm0_A           89 MSEADGVLCSEE  100 (263)
T ss_dssp             EECCSSEEHHHH
T ss_pred             EEecCCeehhhc
Confidence            999998 77664

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.07  E-value=0.0022  Score=49.17  Aligned_cols=81  Identities=16%  Similarity=0.087  Sum_probs=59.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC--eeeeeeeEEeCCEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN--IVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~--iv~~~~~~~~~~~~~lv  118 (218)
                      .++.+....+.|..+.||++.. .+|..+++|.....     ....+.+|+.+++.+.+.+  +++++++....+..++|
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~-----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v   93 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG-----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLL   93 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC-----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEE
T ss_pred             CCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc-----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEE
Confidence            4466655545667799999964 45778999997532     1245788999888884433  66788888877889999


Q ss_pred             EecCCC-ChH
Q 041487          119 FEYLDL-DLG  127 (218)
Q Consensus       119 ~E~~~~-~L~  127 (218)
                      |||+++ ++.
T Consensus        94 ~e~i~G~~l~  103 (264)
T 1nd4_A           94 LGEVPGQDLL  103 (264)
T ss_dssp             EECCSSEETT
T ss_pred             EEecCCcccC
Confidence            999998 663

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=95.87  E-value=0.014  Score=47.31  Aligned_cols=81  Identities=10%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEee--cCCCCCCchHHHHHHHHHHhhCC--CCCeeeeeeeEEeC---CEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN--IQNEPEGVPSYLIAGVSLLKELE--HDNIVRLLDVLTTG---RYV  115 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~--~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~---~~~  115 (218)
                      ...++.++.|.++.||+...  .+..+++|..+  ..... .....+.+|..+++.+.  +..+++++..+.+.   +..
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~--~~~~~vlr~~~~p~~~~~-~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~  116 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVT--PGQTYVMRAKPGPKSKLL-PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRA  116 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEEC--SSCEEEEECCCC-----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSC
T ss_pred             CceEEEcCCcccceEEEEEE--CCceEEEEeCCCCCCCCC-CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCe
Confidence            34578899999999999875  45788888765  32211 12346788999999886  45578888888765   458


Q ss_pred             EEEEecCCC-Ch
Q 041487          116 YLVFEYLDL-DL  126 (218)
Q Consensus       116 ~lv~E~~~~-~L  126 (218)
                      |+||||+++ .+
T Consensus       117 ~~vme~v~G~~l  128 (359)
T 3dxp_A          117 FYIMEFVSGRVL  128 (359)
T ss_dssp             EEEEECCCCBCC
T ss_pred             EEEEEecCCeec
Confidence            999999987 44

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=95.65  E-value=0.099  Score=40.21  Aligned_cols=83  Identities=11%  Similarity=0.086  Sum_probs=59.4

Q ss_pred             cceeEEEEeeecCc-eEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-CCCeeeeeeeEEeCCEEEEE
Q 041487           41 WNYKVVEKIGQGVF-GEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-HDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        41 ~~~~~~~~ig~G~~-g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .+|++. .+..|.. +.||+......+..+++|..+..     ....+.+|..+++.+. +--+.+++.++.+.+..++|
T Consensus        25 ~g~~~~-~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lv   98 (272)
T 4gkh_A           25 YGYRWA-RDNVGQSGATIYRLYGKPNAPELFLKHGKGS-----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLL   98 (272)
T ss_dssp             TTCEEE-EEECSSSSCEEEEEECCTTCCCEEEEEEETH-----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             cCCeEE-EccCCCcCCeEEEEEecCCCeEEEEEECCCC-----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEE
Confidence            345443 3444544 46898877667788999986532     2456788999888873 44578888888899999999


Q ss_pred             EecCCC-ChHHH
Q 041487          119 FEYLDL-DLGSF  129 (218)
Q Consensus       119 ~E~~~~-~L~~~  129 (218)
                      ||++++ ++.+.
T Consensus        99 me~l~G~~~~~~  110 (272)
T 4gkh_A           99 TTAIPGKTAFQV  110 (272)
T ss_dssp             EECCCSEEHHHH
T ss_pred             EEeeCCcccccc
Confidence            999988 65543

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.58  E-value=0.07  Score=42.62  Aligned_cols=74  Identities=20%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             eEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC---CCCeeeeeeeEEeCCEEEEEEe
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE---HDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .-.+.|+.|..+.+|+...  .+..+++|..+..     ....+..|...++.+.   ...+++++......+..++|||
T Consensus        39 ~~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme  111 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND--EVQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLE  111 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES--SSCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEE
T ss_pred             eeeEEeCCccceeeeEEEE--CCCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEE
Confidence            3467899999999999875  5778999987632     2567889998888873   3568888888887889999999


Q ss_pred             cCCC
Q 041487          121 YLDL  124 (218)
Q Consensus       121 ~~~~  124 (218)
                      ++++
T Consensus       112 ~l~G  115 (312)
T 3jr1_A          112 ALNK  115 (312)
T ss_dssp             CCCC
T ss_pred             eccC
Confidence            9987

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.09  E-value=0.043  Score=45.06  Aligned_cols=78  Identities=18%  Similarity=0.122  Sum_probs=50.8

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-----CCCchHHHHHHHHHHhhCC-C-C-CeeeeeeeEEeCCEEE
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-----PEGVPSYLIAGVSLLKELE-H-D-NIVRLLDVLTTGRYVY  116 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~e~~~l~~l~-h-~-~iv~~~~~~~~~~~~~  116 (218)
                      ..+.+|.|..+.||++.....+..+++|..+....     .....+++..|..+++.+. + + .+++++.+  +....+
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~  111 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAV  111 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTE
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccE
Confidence            35789999999999997655678899998753211     0123456788888888773 2 3 34556543  344467


Q ss_pred             EEEecCCC
Q 041487          117 LVFEYLDL  124 (218)
Q Consensus       117 lv~E~~~~  124 (218)
                      +|||++++
T Consensus       112 lvmE~l~g  119 (397)
T 2olc_A          112 TVMEDLSH  119 (397)
T ss_dssp             EEECCCTT
T ss_pred             EEEEeCCC
Confidence            99999976

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=94.52  E-value=0.33  Score=37.81  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCC---CeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD---NIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~~~~~  114 (218)
                      +.-....-...+|.|..+.||+.+. .+|+.+.+|..+...  ......+..|+..|+.+...   -+++++..  ..  
T Consensus        12 l~G~~v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~~--   84 (288)
T 3f7w_A           12 LTGREVAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDA--PALDGLFRAEALGLDWLGRSFGSPVPQVAGW--DD--   84 (288)
T ss_dssp             HHCCCEEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTC--CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--ET--
T ss_pred             hcCCCeEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCC--cchhhHHHHHHHHHHHHHhhCCCCcceEEec--cC--
Confidence            3445567788999999999999985 578899999876432  22234578899998888422   24444443  33  


Q ss_pred             EEEEEecCCC
Q 041487          115 VYLVFEYLDL  124 (218)
Q Consensus       115 ~~lv~E~~~~  124 (218)
                      -+++||+++.
T Consensus        85 ~~lv~e~l~~   94 (288)
T 3f7w_A           85 RTLAMEWVDE   94 (288)
T ss_dssp             TEEEEECCCC
T ss_pred             ceEEEEeecc
Confidence            3689999875

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=92.52  E-value=0.38  Score=37.92  Aligned_cols=74  Identities=16%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCC---CeeeeeeeEE-eCCEEEEEEec
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHD---NIVRLLDVLT-TGRYVYLVFEY  121 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~~~~~~~-~~~~~~lv~E~  121 (218)
                      ++.++.|....||+.     +..+++|+.+    .......+.+|..+++.+.+.   .+++++.+.. ..+..+++||+
T Consensus        24 v~~l~~G~~n~v~~v-----g~~~VlR~~~----~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~   94 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----NGDWVFRFPK----SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK   94 (306)
T ss_dssp             EEEEEECSSEEEEEE-----TTTEEEEEES----SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred             eeecCCCcceeEEEE-----CCEEEEEecC----CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence            456788988899987     5778889843    122356788999999998642   3556666654 44567899999


Q ss_pred             CCC-ChHH
Q 041487          122 LDL-DLGS  128 (218)
Q Consensus       122 ~~~-~L~~  128 (218)
                      ++| .+.+
T Consensus        95 i~G~~l~~  102 (306)
T 3tdw_A           95 VQGQILGE  102 (306)
T ss_dssp             CCSEECHH
T ss_pred             cCCeECch
Confidence            998 6654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=91.18  E-value=0.0096  Score=50.38  Aligned_cols=64  Identities=9%  Similarity=0.098  Sum_probs=17.4

Q ss_pred             eEEEEeeecCceEEEEEEEccCCcEEEE------EEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETGKKVAI------KMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~~~vai------K~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      .+.+.||   ||.||++.......+||+      |..+......+....+.+|..+++.++|||+++.+.+-.
T Consensus       145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            3344555   999999988665678888      665543344444566888889999999999999987653

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=87.84  E-value=1.1  Score=35.79  Aligned_cols=85  Identities=13%  Similarity=0.130  Sum_probs=55.6

Q ss_pred             eEEEEe-eecCceEEEEEEEc--c----CCcEEEEEEeecCCC-CCCchHHHHHHHHHHhhCC-C--CCeeeeeeeEEeC
Q 041487           44 KVVEKI-GQGVFGEVYKCLNL--E----TGKKVAIKMINIQNE-PEGVPSYLIAGVSLLKELE-H--DNIVRLLDVLTTG  112 (218)
Q Consensus        44 ~~~~~i-g~G~~g~v~~~~~~--~----~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~-h--~~iv~~~~~~~~~  112 (218)
                      ...+.| +.|..+.+|+....  .    ++..+++|..+.... .......+.+|+.+++.+. +  ..+++++.+..+.
T Consensus        23 ~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~  102 (357)
T 3ats_A           23 TVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTG  102 (357)
T ss_dssp             EEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSS
T ss_pred             EEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCC
Confidence            445677 88989999988653  1    256889998653220 0001134778888888773 3  3577787776554


Q ss_pred             ---CEEEEEEecCCC-ChHH
Q 041487          113 ---RYVYLVFEYLDL-DLGS  128 (218)
Q Consensus       113 ---~~~~lv~E~~~~-~L~~  128 (218)
                         +..++|||++++ .+.+
T Consensus       103 ~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          103 DVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             TTTSSCEEEEECCCCBCCCB
T ss_pred             CccCCceEEEEecCCCChhh
Confidence               357899999988 5543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=85.54  E-value=4.1  Score=31.90  Aligned_cols=71  Identities=17%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC--CCeeeeee------eEEeCCEEEE
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH--DNIVRLLD------VLTTGRYVYL  117 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h--~~iv~~~~------~~~~~~~~~l  117 (218)
                      ++.|+.|..+.||++..  .+..+++|....   .   ...+..|..+++.+..  -.+++++.      +....+..++
T Consensus        37 ~~~l~gG~~n~~~~v~~--~~~~~vlk~~~~---~---~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~  108 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHT--DSGAVCLKRIHR---P---EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFV  108 (346)
T ss_dssp             EEECC----CEEEEEEE--TTEEEEEEEECS---C---HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEE
T ss_pred             eeeccccccCcEEEEEe--CCCCEEEEecCC---C---HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEE
Confidence            45666677889999875  345689998763   1   2344455555554421  12344443      1235678899


Q ss_pred             EEecCCC
Q 041487          118 VFEYLDL  124 (218)
Q Consensus       118 v~E~~~~  124 (218)
                      +|||+++
T Consensus       109 l~~~i~G  115 (346)
T 2q83_A          109 VYDWIEG  115 (346)
T ss_dssp             EEECCCC
T ss_pred             EEEeecC
Confidence            9999987

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=85.52  E-value=0.49  Score=37.08  Aligned_cols=73  Identities=16%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCC--eeeeeeeEEeCC---EEEEEE
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDN--IVRLLDVLTTGR---YVYLVF  119 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~--iv~~~~~~~~~~---~~~lv~  119 (218)
                      ++.++.|..+.||+..     ..+++|+.+..    .....+.+|..+++.+ .+..  +++++.......   ..|+||
T Consensus        25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm   95 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGF   95 (304)
T ss_dssp             CCEEEECSSEEEEEST-----TSEEEEEESSH----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEE
T ss_pred             eEecCCCCcceEEEEC-----CEEEEEecCCc----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEE
Confidence            3468999999999763     56889985421    3356788999999887 4333  344444433332   458899


Q ss_pred             ecCCC-ChH
Q 041487          120 EYLDL-DLG  127 (218)
Q Consensus       120 E~~~~-~L~  127 (218)
                      |+++| ++.
T Consensus        96 ~~i~G~~l~  104 (304)
T 3sg8_A           96 TKIKGVPLT  104 (304)
T ss_dssp             ECCCCEECC
T ss_pred             cccCCeECC
Confidence            99987 554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-29
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-27
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-27
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-25
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-24
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-24
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-22
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-22
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	5e-22
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	9e-22
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-05
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-21
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-21
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-21
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-21
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-07
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	6e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-20
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-20
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-06
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-20
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-20
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-04
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	5e-20
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-19
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-19
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-19
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	7e-19
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	7e-19
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	7e-18
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-17
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-06
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	6e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	0.001
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	8e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-16
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-16
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-16
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-05
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-16
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-16
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-16
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-16
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-16
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-16
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-15
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-04
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-15
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-15
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-15
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-15
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-14
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-14
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-14
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-14
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-04
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-14
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	8e-14
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	8e-14
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-13
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-04
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-13
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	0.003
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-13
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-11
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	0.002
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-11
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-11
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-11
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	6e-06

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 1e-29
 Identities = 42/216 (19%), Positives = 80/216 (37%), Gaps = 58/216 (26%)

Query: 38  VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
           +KD +++ + ++G G  G V+K  +  +G  +A K+I+++ +P  + + +I  + +L E 
Sbjct: 3   LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP-AIRNQIIRELQVLHEC 61

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRK-----------------------H 133
               IV       +   + +  E++D   L   ++K                        
Sbjct: 62  NSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121

Query: 134 TITSI--------------RPHIK-----------------EVGSP-YKAPESRIRSSVY 161
               I              R  IK                  VG+  Y +PE R++ + Y
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE-RLQGTHY 180

Query: 162 STPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR 197
           S   D+W++G    EM  G+   P      L L+  
Sbjct: 181 SVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFG 216

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 2e-27
 Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 57/199 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y   EKIGQG  G VY  +++ TG++VAI+ +N+Q +P+     +I  + +++E ++ N
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPN 78

Query: 102 IVRLLDVLTTGRYVYLVFEYL---DLDLGSFIRKHTITSIRPHIKEV------------- 145
           IV  LD    G  +++V EYL    L             I    +E              
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVI 138

Query: 146 ---------------------------------------GSPYKAPESRIRSSVYSTPHD 166
                                                  G+PY      +    Y    D
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD 198

Query: 167 VWAVGCIFAEMVSGKPLFP 185
           +W++G +  EM+ G+P + 
Sbjct: 199 IWSLGIMAIEMIEGEPPYL 217

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-27
 Identities = 72/215 (33%), Positives = 98/215 (45%), Gaps = 59/215 (27%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           N++ VEKIG+G +G VYK  N  TG+ VA+K I +  E EGVPS  I  +SLLKEL H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITS------------------------ 137
           IV+LLDV+ T   +YLVFE+L  DL  F+    +T                         
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR 122

Query: 138 -----IRPHI-----------------KEVGSPYKAPESRIRSSVYSTPH---------- 165
                ++P                   +  G P +     + +  Y  P           
Sbjct: 123 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYST 182

Query: 166 --DVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
             D+W++GCIFAEMV+ + LFP   + D L  I R
Sbjct: 183 AVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 217

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (243), Expect = 2e-25
 Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 57/200 (28%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           ++++   +G+G FG VY     ++   +A+K++     E  GV   L   V +   L H 
Sbjct: 7   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 66

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRK-----------------------HTIT 136
           NI+RL         VYL+ EY  L  +   ++K                       H+  
Sbjct: 67  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 126

Query: 137 SIRPHIK------------------------------EVGSP-YKAPESRIRSSVYSTPH 165
            I   IK                                G+  Y  PE  I   ++    
Sbjct: 127 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE-MIEGRMHDEKV 185

Query: 166 DVWAVGCIFAEMVSGKPLFP 185
           D+W++G +  E + GKP F 
Sbjct: 186 DLWSLGVLCYEFLVGKPPFE 205

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.6 bits (240), Expect = 1e-24
 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 56/199 (28%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDN 101
           +  + +IG G FG VY   ++   + VAIK ++    +       +I  V  L++L H N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRK------------------------HTITS 137
            ++           +LV EY        +                          H+   
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNM 136

Query: 138 IRPHIK----------------------------EVGSP-YKAPES--RIRSSVYSTPHD 166
           I   +K                             VG+P + APE    +    Y    D
Sbjct: 137 IHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVD 196

Query: 167 VWAVGCIFAEMVSGKPLFP 185
           VW++G    E+   KP   
Sbjct: 197 VWSLGITCIELAERKPPLF 215

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.7 bits (235), Expect = 6e-24
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVS 92
           +Q E ++D  Y   + +G G F EV    +  T K VAIK I  +   EG    +   ++
Sbjct: 2   KQAEDIRD-IYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKAL-EGKEGSMENEIA 59

Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +L +++H NIV L D+  +G ++YL+ + +   +L   I + 
Sbjct: 60  VLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK 101

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 4e-22
 Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 61/212 (28%)

Query: 47  EKIGQGVFGEVYKCLNLETGKKVAIKMIN---IQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           + +G+G F  VYK  +  T + VAIK I         +G+    +  + LL+EL H NI+
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 104 RLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHI--------------------- 142
            LLD       + LVF++++ DL   I+ +++     HI                     
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILH 123

Query: 143 ------------------------KEVGSPYKAPESRIRSSVYSTPH------------D 166
                                   K  GSP +A   ++ +  Y  P             D
Sbjct: 124 RDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVD 183

Query: 167 VWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVR 197
           +WAVGCI AE++   P  P     D L+ I  
Sbjct: 184 MWAVGCILAELLLRVPFLPGDSDLDQLTRIFE 215

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 90.1 bits (223), Expect = 4e-22
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y ++E++G G FG V++C+   TG+    K IN     +     +   +S++ +L H  
Sbjct: 30  YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLD--KYTVKNEISIMNQLHHPK 87

Query: 102 IVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           ++ L D       + L+ E+L   +L   I   
Sbjct: 88  LINLHDAFEDKYEMVLILEFLSGGELFDRIAAE 120

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 90.1 bits (223), Expect = 5e-22
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y + E++G G FG V++     TG   A K +   +E +     +   +  +  L H  
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESD--KETVRKEIQTMSVLRHPT 84

Query: 102 IVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           +V L D       + +++E++   +L   +   
Sbjct: 85  LVNLHDAFEDDNEMVMIYEFMSGGELFEKVADE 117

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 9e-22
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +Y+V+  IG G +G   K      GK +  K ++  +  E     L++ V+LL+EL+H N
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 102 IVRLLDVLT--TGRYVYLVFEYLDL-DLGSFIRKHT 134
           IVR  D +   T   +Y+V EY +  DL S I K T
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGT 100

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC 186
            Y +PE  +    Y+   D+W++GC+  E+ +  P F  
Sbjct: 179 YYMSPEQ-MNRMSYNEKSDIWSLGCLLYELCALMPPFTA 216

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 2e-21
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVS 92
           Q  K +  ++K  + +G+G F  V     L T ++ AIK++  ++   E    Y+     
Sbjct: 1   QPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERD 60

Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           ++  L+H   V+L         +Y    Y    +L  +IRK 
Sbjct: 61  VMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI 102

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 125 DLGSFIRKHTITSIRPHIKEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPL 183
           D G+       +        VG+  Y +PE  +         D+WA+GCI  ++V+G P 
Sbjct: 151 DFGTAKVLSPESKQARANSFVGTAQYVSPE-LLTEKSACKSSDLWALGCIIYQLVAGLPP 209

Query: 184 FPCGKKDHL 192
           F  G +  +
Sbjct: 210 FRAGNEYLI 218

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 2e-21
 Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 59/215 (27%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +  +G G +G V    + +TG +VA+K ++   +           + LLK ++H+N
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN 78

Query: 102 IVRLLDVLTTGR------YVYLVFEYLDLDLGSFI--RKHTITSIRPHIKEV-------- 145
           ++ LLDV T  R       VYLV   +  DL + +  +K T   ++  I ++        
Sbjct: 79  VIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH 138

Query: 146 ------------------------------------------GSPYKAPESRIRSSVYST 163
                                                        Y+APE  +    Y+ 
Sbjct: 139 SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQ 198

Query: 164 PHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVR 197
             D+W+VGCI AE+++G+ LFP     D L LI+R
Sbjct: 199 TVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILR 233

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 5e-21
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y + E +G+G FG V++C+   + K    K + ++   +     +   +S+L    H N
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ---VLVKKEISILNIARHRN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLD-LDLGSFIRKH 133
           I+ L +   +   + ++FE++  LD+   I   
Sbjct: 63  ILHLHESFESMEELVMIFEFISGLDIFERINTS 95

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 5e-21
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ + KIGQG FGEV+K  + +TG+KVA+K + ++NE EG P   +  + +L+ L+H+N
Sbjct: 11  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 70

Query: 102 IVRLLDVLTTG--------RYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEV 145
           +V L+++  T           +YLVF++ + DL   +    +      IK V
Sbjct: 71  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRV 122

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 123 DLDLGSFIRKHTITSIRPHIKEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK 181
           D  L         +    +   V +  Y+ PE  +    Y  P D+W  GCI AEM +  
Sbjct: 160 DFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRS 219

Query: 182 PLFPC-GKKDHLSLIVR 197
           P+     ++  L+LI +
Sbjct: 220 PIMQGNTEQHQLALISQ 236

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 6e-21
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           ++ +V+ +G+G +GEV   +N  T + VA+K+++++   +  P  +   + + K L H+N
Sbjct: 6   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINKMLNHEN 64

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLG-SFIRKH 133
           +V+       G   YL  EY         I   
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD 97

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.1 bits (210), Expect = 2e-20
 Identities = 26/198 (13%), Positives = 64/198 (32%), Gaps = 54/198 (27%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           +++++  +G G FG V+   +   G+  A+K++  +         +      +L  + H 
Sbjct: 5   DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHP 64

Query: 101 NIVRLLDVLTTGRYVYLVFEYLD----LDLGSFIRKHTITSIRPHIKEV----------- 145
            I+R+       + ++++ +Y++      L    ++      + +  EV           
Sbjct: 65  FIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD 124

Query: 146 --------------------------------------GSPYKAPESRIRSSVYSTPHDV 167
                                                 G+P       + +  Y+   D 
Sbjct: 125 IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDW 184

Query: 168 WAVGCIFAEMVSGKPLFP 185
           W+ G +  EM++G   F 
Sbjct: 185 WSFGILIYEMLAGYTPFY 202

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (209), Expect = 2e-20
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 34  QMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIA 89
           + E V D  Y   E++G G F  V KC    TG + A K I       +        +  
Sbjct: 4   RQENVDD-YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62

Query: 90  GVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLD 123
            VS+LKE++H N++ L +V      V L+ E + 
Sbjct: 63  EVSILKEIQHPNVITLHEVYENKTDVILILELVA 96

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 126 LGSFIRKHTITSIRPHIKEVGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLF 184
           +  F   H I          G+  + APE  +         D+W++G I   ++SG   F
Sbjct: 158 IIDFGLAHKIDFGNEFKNIFGTPEFVAPEI-VNYEPLGLEADMWSIGVITYILLSGASPF 216

Query: 185 P 185
            
Sbjct: 217 L 217

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 2e-20
 Identities = 48/215 (22%), Positives = 74/215 (34%), Gaps = 59/215 (27%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ ++ IG G  G V    +    + VAIK ++   + +         + L+K + H N
Sbjct: 18  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN 77

Query: 102 IVRLLDVLTT------GRYVYLVFEYLDLDLGSFIRK---------------------HT 134
           I+ LL+V T        + VYLV E +D +L   I+                      H+
Sbjct: 78  IISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS 137

Query: 135 ITSIRPHIK-------------------------------EVGSPYKAPESRIRSSVYST 163
              I   +K                                V + Y      I    Y  
Sbjct: 138 AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKE 197

Query: 164 PHDVWAVGCIFAEMVSGKPLFPC-GKKDHLSLIVR 197
             D+W+VGCI  EMV  K LFP     D  + ++ 
Sbjct: 198 NVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIE 232

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 84.6 bits (208), Expect = 2e-20
 Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y  +EKIG+G +G VYK  N   G+  A+K I ++ E EG+PS  I  +S+LKEL+H N
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           IV+L DV+ T + + LVFE+LD DL   +   
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVC 93

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 43.3 bits (101), Expect = 7e-06
 Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
           Y+AP+  + S  YST  D+W+VGCIFAEMV+G PLFP   + D L  I R
Sbjct: 166 YRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR 215

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 3e-20
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            ++++ ++G G FG+VYK  N ET    A K+I+ ++E E      +  + +L   +H N
Sbjct: 13  FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE--LEDYMVEIDILASCDHPN 70

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDL 126
           IV+LLD       ++++ E+     
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGA 95

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 4e-20
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y+ ++ +G G +G V   ++  TG KVAIK +    + E         + LLK + H+N+
Sbjct: 20  YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV 79

Query: 103 VRLLDVLTTGR------YVYLVFEYLDLDLGSFIRKHTIT 136
           + LLDV T           YLV  ++  DLG  ++   + 
Sbjct: 80  IGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLG 119

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPC 186
           Y+APE  +    Y+   D+W+VGCI AEM++GK LF  
Sbjct: 184 YRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKG 221

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 5e-20
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 60/203 (29%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
            K   +IG+G F  VYK L+ ET  +VA   +  +   +           +LK L+H NI
Sbjct: 11  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI 70

Query: 103 VRLLDVLTT----GRYVYLVFEYLDL-DLGSFIRKHTITS---IRPHIKEVGSPY----- 149
           VR  D   +     + + LV E +    L +++++  +     +R   +++         
Sbjct: 71  VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT 130

Query: 150 --------------------------------KAPESRIRSSVYSTPH------------ 165
                                               +    +V  TP             
Sbjct: 131 RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYD 190

Query: 166 ---DVWAVGCIFAEMVSGKPLFP 185
              DV+A G    EM + +  + 
Sbjct: 191 ESVDVYAFGMCMLEMATSEYPYS 213

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 83.4 bits (205), Expect = 1e-19
 Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 64/215 (29%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHD 100
           +Y++V K+G+G + EV++ +N+   +KV +K++    + +     +   + +L+ L    
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK-----IKREIKILENLRGGP 90

Query: 101 NIVRLLDVLT--TGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEV------------ 145
           NI+ L D++     R   LVFE+++  D     +  T   IR ++ E+            
Sbjct: 91  NIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGI 150

Query: 146 ----------------------------------------GSP-YKAPESRIRSSVYSTP 164
                                                    S  +K PE  +   +Y   
Sbjct: 151 MHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYS 210

Query: 165 HDVWAVGCIFAEMVSGKPLFPCGK--KDHLSLIVR 197
            D+W++GC+ A M+  K  F  G    D L  I +
Sbjct: 211 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAK 245

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.6 bits (206), Expect = 1e-19
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQ----NEPEGVPSYLIAGVSLLKEL 97
           ++ V   IG+G FGEVY C   +TGK  A+K ++ +     + E +       +SL+   
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +   IV +     T   +  + + ++  DL   + +H
Sbjct: 65  DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH 101

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 6e-19
 Identities = 42/104 (40%), Positives = 62/104 (59%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
            Y+ +EKIG+G +G V+K  N ET + VA+K + + ++ EGVPS  +  + LLKEL+H N
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKHTITSIRPHIKEV 145
           IVRL DVL + + + LVFE+ D DL  +            +K  
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSF 106

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 6e-19
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN--EPEGVPSYLIAGVSLLKELEH 99
           ++ + + +G+G FG+V+     +T +  AIK +        + V   ++    L    EH
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62

Query: 100 DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
             +  +     T   ++ V EYL+  DL   I+  
Sbjct: 63  PFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC 97

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 80.6 bits (198), Expect = 7e-19
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDN 101
           Y++ E +G G   EV+   +L   + VA+K++                       L H  
Sbjct: 9   YELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA 68

Query: 102 IVRLLDVLTT----GRYVYLVFEYLD-LDLGSFIRKH 133
           IV + D        G   Y+V EY+D + L   +   
Sbjct: 69  IVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE 105

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 7e-19
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y  +  IG+G +G V    +     +VAIK I+     +      +  + +L    H+NI
Sbjct: 10  YTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEH-QTYCQRTLREIKILLRFRHENI 68

Query: 103 VRLLDVLTTG-----RYVYLVFEYLDLDLGSFIRKHTIT 136
           + + D++        + VYLV   +  DL   ++   ++
Sbjct: 69  IGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLS 107

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 21/65 (32%), Positives = 30/65 (46%)

Query: 122 LDLDLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK 181
            D  L          +           Y+APE  + S  Y+   D+W+VGCI AEM+S +
Sbjct: 151 CDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 210

Query: 182 PLFPC 186
           P+FP 
Sbjct: 211 PIFPG 215

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 77.8 bits (191), Expect = 7e-18
 Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 9/101 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-------EPEGVPSYLIAGVSLL 94
           NY+  E +G+GV   V +C++  T K+ A+K+I++         E + +    +  V +L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 95  KEL-EHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           +++  H NI++L D   T  + +LVF+ +   +L  ++ + 
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK 104

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 3e-17
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLK 95
           ++ ++ +Y   + IG G FG VY+    ++G+ VAIK +           +    + +++
Sbjct: 15  DRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR------FKNRELQIMR 68

Query: 96  ELEHDNIVRLLDVLTTG------RYVYLVFEYLDLDLGSFIRKH 133
           +L+H NIVRL     +        Y+ LV +Y+   +    R +
Sbjct: 69  KLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 112

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 148 PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP-CGKKDHLSLIVR 197
            Y+APE    ++ Y++  DVW+ GC+ AE++ G+P+FP     D L  I++
Sbjct: 187 YYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.3 bits (184), Expect = 6e-17
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 33  EQMEKVKDWNYKVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYL 87
             +E  ++ N + V  IG+G FG V++      L  E    VA+KM+  +   +   +  
Sbjct: 6   LSLEYPRN-NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQ-ADF 63

Query: 88  IAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVG 146
               +L+ E ++ NIV+LL V   G+ + L+FEY+   DL  F+R        PH     
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSM-----SPHTVCSL 118

Query: 147 SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG 180
           S          SS    P       CI  ++ +G
Sbjct: 119 SHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAG 152

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 125 DLGSFIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPL 183
           D G     ++    +    +       P   I  + Y+T  DVWA G +  E+ S G   
Sbjct: 183 DFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP 242

Query: 184 FPCGKKDHLSLIVR 197
           +     + +   VR
Sbjct: 243 YYGMAHEEVIYYVR 256

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 6e-17
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGK-----KVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
           N +  + +G G FG+V         K     +VA+KM+  + +     + L++ + ++ +
Sbjct: 38  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREA-LMSELKMMTQ 96

Query: 97  LE-HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKAPES 154
           L  H+NIV LL   T    +YL+FEY    DL +++R          I+         + 
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEY------ENQK 150

Query: 155 RIRSSVYSTPHDVWAVGCIFAEMVSG 180
           R+             + C   ++  G
Sbjct: 151 RLEEEEDLNVLTFEDLLCFAYQVAKG 176

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 8e-17
 Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 63/201 (31%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             K+++ IG+G FG+V        G KVA+K I      +      +A  S++ +L H N
Sbjct: 8   ELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATAQA----FLAEASVMTQLRHSN 61

Query: 102 IVRLLDVLTTGR-YVYLVFEYLDL-DLGSFIRKHTITSIRP------------------- 140
           +V+LL V+   +  +Y+V EY+    L  ++R    + +                     
Sbjct: 62  LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG 121

Query: 141 -------------------HIKEVGSPYKAPESRIRSSVYSTPH---------------- 165
                                K          S  + +                      
Sbjct: 122 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKS 181

Query: 166 DVWAVGCIFAEMVS-GKPLFP 185
           DVW+ G +  E+ S G+  +P
Sbjct: 182 DVWSFGILLWEIYSFGRVPYP 202

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 1e-16
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
                + +G G FG+V +      +  +    VA+KM+          + L++ + +L  
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREA-LMSELKVLSY 82

Query: 97  LE-HDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           L  H NIV LL   T G    ++ EY    DL +F+R+ 
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 121

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 2e-16
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +   ++++G G FG V           VAIKMI   +  E      I    ++  L H+ 
Sbjct: 5   DLTFLKELGTGQFGVVKYG-KWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEK 60

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           +V+L  V T  R ++++ EY+ 
Sbjct: 61  LVQLYGVCTKQRPIFIITEYMA 82

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 2e-16
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIAGVSLLKEL- 97
           Y+V   +G G FG VY  + +     VAIK +              + +   V LLK++ 
Sbjct: 6   YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVS 65

Query: 98  -EHDNIVRLLDVLTTGRYVYLVFEYLD--LDLGSFIRKH 133
                ++RLLD         L+ E  +   DL  FI + 
Sbjct: 66  SGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER 104

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 123 DLDLGSFIRKHTITSIRPHIKEVGSP-YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK 181
           D   G+ ++    T         G+  Y  PE       +     VW++G +  +MV G 
Sbjct: 154 DFGSGALLKDTVYTDF------DGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD 207

Query: 182 PLFP 185
             F 
Sbjct: 208 IPFE 211

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
               V++IG G FG V+         KVAIK I      E      I    ++ +L H  
Sbjct: 6   ELTFVQEIGSGQFGLVHLGY-WLNKDKVAIKTIREGAMSE---EDFIEEAEVMMKLSHPK 61

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           +V+L  V      + LVFE+++
Sbjct: 62  LVQLYGVCLEQAPICLVFEFME 83

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 3e-16
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
             K+VE++G G FGEV+         KVA+K +   +     P   +A  +L+K+L+H  
Sbjct: 14  TLKLVERLGAGQFGEVWMGY-YNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQR 69

Query: 102 IVRLLDVLTTGRYVYLVFEYLDLDL 126
           +VRL  V+T    +Y++ EY++   
Sbjct: 70  LVRLYAVVTQEP-IYIITEYMENGS 93

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 3e-16
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 40  DW-----NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLL 94
           DW        V ++IG G FG VYK    +    VA+KM+N+              V +L
Sbjct: 2   DWEIPDGQITVGQRIGSGSFGTVYKG---KWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 58

Query: 95  KELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           ++  H NI+  +   +T   + +V ++ +   L   +   
Sbjct: 59  RKTRHVNILLFMGY-STAPQLAIVTQWCEGSSLYHHLHII 97

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 4e-16
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 20/102 (19%)

Query: 42  NYKVVEK-IGQGVFGEVYKCLNLETGKKVAIKMIN----IQNEPEGVPSYLIAGVSLLKE 96
           +YKV  + +G G+ G+V +  N  T +K A+KM+      + E E             + 
Sbjct: 12  DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVE----------LHWRA 61

Query: 97  LEHDNIVRLLDVLTT----GRYVYLVFEYLDL-DLGSFIRKH 133
            +  +IVR++DV        + + +V E LD  +L S I+  
Sbjct: 62  SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDR 103

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.4 bits (177), Expect = 5e-16
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           +  +  K+G G +GEVY+ +  +    VA+K +             +   +++KE++H N
Sbjct: 18  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV---EEFLKEAAVMKEIKHPN 74

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           +V+LL V T     Y++ E++ 
Sbjct: 75  LVQLLGVCTREPPFYIITEFMT 96

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.6 bits (177), Expect = 7e-16
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNI 102
           Y++  KIG G FG++Y   ++  G++VAIK+  ++ +       L     + K ++    
Sbjct: 9   YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ----LHIESKIYKMMQGGVG 64

Query: 103 VRLL-DVLTTGRYVYLVFEYLDLDLGSFIRKH 133
           +  +      G Y  +V E L   L       
Sbjct: 65  IPTIRWCGAEGDYNVMVMELLGPSLEDLFNFC 96

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 7e-16
 Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 9/101 (8%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKK-VAIKMINIQNEPEGVPSYLIAGVSLLKEL--- 97
            Y+ V +IG+G +G+V+K  +L+ G + VA+K + +Q   EG+P   I  V++L+ L   
Sbjct: 8   QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF 67

Query: 98  EHDNIVRLLDVLTTGR-----YVYLVFEYLDLDLGSFIRKH 133
           EH N+VRL DV T  R      + LVFE++D DL +++ K 
Sbjct: 68  EHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKV 108

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 6e-07
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 129 FIRKHTITSIRPHIKEVGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK 188
           F      +        V + +      +  S Y+TP D+W+VGCIFAEM   KPLF    
Sbjct: 160 FGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS 219

Query: 189 -KDHLSLIVRY 198
             D L  I+  
Sbjct: 220 DVDQLGKILDV 230

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-D 100
           +YKV  +IG+G FG +++  NL   ++VAIK    +++       L       K L    
Sbjct: 6   HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP----QLRDEYRTYKLLAGCT 61

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
            I  +      G +  LV + L   L   +   
Sbjct: 62  GIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLC 94

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 97  LEHDNIVRLLDVLTTGRYVYLV-FEYLDLDLGSFIRKHTITSIRPHIKEVGSP-YKAPES 154
           ++ DN +           +Y+V F  +        ++H     + ++   G+  Y +   
Sbjct: 127 IKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNL--SGTARYMSIN- 183

Query: 155 RIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP 185
                  S   D+ A+G +F   + G   + 
Sbjct: 184 THLGREQSRRDDLEALGHVFMYFLRGSLPWQ 214

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 40  DWN-YKVVEKIGQGVFGEVYKCLNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKE 96
           DWN  K  + IG+G FG+V K    + G +   AIK +      +    +      L K 
Sbjct: 8   DWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKL 67

Query: 97  LEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYKA 151
             H NI+ LL       Y+YL  EY    +L  F+RK  +    P      S    
Sbjct: 68  GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAST 123

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 3e-15
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 35  MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAG 90
           +  +K+  +K ++ +G G FG VYK L +  G+     VAIK +     P+     ++  
Sbjct: 3   LRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN-KEILDE 61

Query: 91  VSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLDLGSFIRKH 133
             ++  +++ ++ RLL +  T     +        L  ++R+H
Sbjct: 62  AYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREH 104

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 3e-15
 Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
           ++  ++ +G+G FG+V       TG+  A+K++  +    +   ++ +    +L+   H 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65

Query: 101 NIVRLLDVLTTGRYVYLVFEYLDLD-LGSFIRKHTITS 137
            +  L     T   +  V EY +   L   + +  + +
Sbjct: 66  FLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFT 103

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 4e-15
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 38  VKDWNYKVVE-KIGQGVFGEVYKCLNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLL 94
           +K  N  + + ++G G FG V + +     K+  VAIK++    E       ++    ++
Sbjct: 5   LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADT-EEMMREAQIM 63

Query: 95  KELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
            +L++  IVRL+ V      + LV E      L  F+   
Sbjct: 64  HQLDNPYIVRLIGV-CQAEALMLVMEMAGGGPLHKFLVGK 102

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (168), Expect = 1e-14
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVS 92
           +++     K+ + IG G FGEV        GK+   VAIK +      +      ++  S
Sbjct: 21  KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQR-RDFLSEAS 79

Query: 93  LLKELEHDNIVRLLDVLTTGRYVYLVFEYLD 123
           ++ + +H N++ L  V+T    V ++ E+++
Sbjct: 80  IMGQFDHPNVIHLEGVVTKSTPVMIITEFME 110

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 48  KIGQGVFGEVYKCL--NLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRL 105
           ++G G FG V K      +  K VA+K++  +     +   L+A  +++++L++  IVR+
Sbjct: 14  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 73

Query: 106 LDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
           + +     +  LV E  +L  L  +++++
Sbjct: 74  IGICEAESW-MLVMEMAELGPLNKYLQQN 101

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 1e-14
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 40  DW-----NYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNEPEGVPSYLIAGV 91
           D+       ++   IG+G FG+V++ + +        VAIK        + V    +   
Sbjct: 1   DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTS-DSVREKFLQEA 59

Query: 92  SLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDLD 125
             +++ +H +IV+L+ V+T    V+++ E   L 
Sbjct: 60  LTMRQFDHPHIVKLIGVITEN-PVWIIMELCTLG 92

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 3e-14
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKC-LNLETGK--KVAIKMINIQ--NEPEGVPSYLIAGVSLLKE 96
           + +++EK+G G FG V +   +  +GK   VA+K +     ++PE +    I  V+ +  
Sbjct: 9   DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAM-DDFIREVNAMHS 67

Query: 97  LEHDNIVRLLDVLTTGRYVYLVFEYLDL 124
           L+H N++RL  V+ T   + +V E   L
Sbjct: 68  LDHRNLIRLYGVVLTP-PMKMVTELAPL 94

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 145 VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFP 185
                      +++  +S   D W  G    EM + G+  + 
Sbjct: 175 KVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI 216

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 7e-14
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGK-------KVAIKMINIQNEPEGVPSYLIAGVSLL 94
              + + +G+G FG+V     +   K       KVA+KM+      + +   +     + 
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73

Query: 95  KELEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKHTITSIRPHIKEVGSPYK 150
              +H NI+ LL   T    +Y++ EY    +L  +++      +        +P +
Sbjct: 74  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEE 130

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 8e-14
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
              + E IG+G FGEV++      G++VA+K+ + + E      +  A +     L H+N
Sbjct: 4   TIVLQESIGKGRFGEVWRG--KWRGEEVAVKIFSSREERSW---FREAEIYQTVMLRHEN 58

Query: 102 IVRLLDVLT----TGRYVYLVFEYLDL-DLGSFIRKHTIT 136
           I+  +        T   ++LV +Y +   L  ++ ++T+T
Sbjct: 59  ILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVT 98

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 8e-14
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
              +  ++GQG FG VY+      +  E   +VAIK +N            +   S++KE
Sbjct: 21  KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRER-IEFLNEASVMKE 79

Query: 97  LEHDNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
               ++VRLL V++ G+   ++ E +   DL S++R  
Sbjct: 80  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL 117

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 21/115 (18%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 26  VKKTNGSEQMEKVKDWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQN--EP 80
           ++  N +   EKV   N+++++ +G G +G+V+    +   +TGK  A+K++      + 
Sbjct: 9   LRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQK 68

Query: 81  EGVPSYLIAGVSLLKELEH-DNIVRLLDVLTTGRYVYLVFEYLDL-DLGSFIRKH 133
                +      +L+ +     +V L     T   ++L+ +Y++  +L + + + 
Sbjct: 69  AKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR 123

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 55  GEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY 114
            +++  L+   G ++   +   +   E      +  + L  E  H   +   D+      
Sbjct: 102 TKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENIL 161

Query: 115 VYLVFEYLDLDLGSFIRKHTITSIRPHIKEVGSPYKAPES-RIRSSVYSTPHDVWAVGCI 173
           +      +  D G         + R +       Y AP+  R   S +    D W++G +
Sbjct: 162 LDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVL 221

Query: 174 FAEMVSGKPLFPC-GKKDHLSLIVR 197
             E+++G   F   G+K+  + I R
Sbjct: 222 MYELLTGASPFTVDGEKNSQAEISR 246

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN 101
           + ++  K+GQG FGEV+         +VAIK +         P   +    ++K+L H+ 
Sbjct: 18  SLRLEVKLGQGCFGEVWMGT-WNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEK 73

Query: 102 IVRLLDVLTTGRYVYLVFEYLD 123
           +V+L  V++     Y+V EY+ 
Sbjct: 74  LVQLYAVVSEEPI-YIVTEYMS 94

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 6/47 (12%), Positives = 14/47 (29%)

Query: 145 VGSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDH 191
                           ++   DVW+ G +  E+ +   +   G  + 
Sbjct: 175 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR 221

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.6 bits (159), Expect = 2e-13
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHD 100
            +  ++ +G G FG V    + E+G   A+K+++ Q         + +    +L+ +   
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101

Query: 101 NIVRLLDVLTTGRYVYLVFEY 121
            +V+L         +Y+V EY
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEY 122

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 36  EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLK 95
           E  KD  Y +V K+G G F  V+   ++     VA+K++      +         + LL+
Sbjct: 8   EPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---KVYTEAAEDEIKLLQ 64

Query: 96  ELEHDNIVRLLDV 108
            +   +  +   +
Sbjct: 65  RVNDADNTKEDSM 77

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 149 YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFP-------CGKKDHLSLIVRYFTA 201
           Y++PE  +  + +    D+W+  C+  E+++G  LF            DH++ I+     
Sbjct: 195 YRSPE-VLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGE 253

Query: 202 LTNYLV 207
           L +YL+
Sbjct: 254 LPSYLL 259

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 42  NYKVVEKIGQGVFGEVYKCLNLETGKK----VAIKMINIQNEPEGVPSYLIAGVSLLKEL 97
                + IG G FGEVYK +   +  K    VAIK +      E      +    ++ + 
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK-AGYTEKQRVDFLGEAGIMGQF 66

Query: 98  EHDNIVRLLDVLTTGRYVYLVFEY 121
            H NI+RL  V++  + + ++ EY
Sbjct: 67  SHHNIIRLEGVISKYKPMMIITEY 90

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 47  EKIGQGVFGEVYKCLNLETGKK---VAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIV 103
           E IG+G FG VY    L+   K    A+K +N   +   V S  +    ++K+  H N++
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNVL 91

Query: 104 RLLDV-LTTGRYVYLVFEYLD 123
            LL + L +     +V  Y+ 
Sbjct: 92  SLLGICLRSEGSPLVVLPYMK 112

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-11
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 42  NYKVVEKIGQGVFGEVYKC-----LNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKE 96
             K+ + +G+G FG+V +          T + VA+KM+          + +     L+  
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 73

Query: 97  LEHDNIVRLLDVLT-TGRYVYLVFEYLDL-DLGSFIRKH 133
             H N+V LL   T  G  + ++ E+    +L +++R  
Sbjct: 74  GHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK 112

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 12/108 (11%), Positives = 33/108 (30%), Gaps = 13/108 (12%)

Query: 43  YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMI--------NIQNEPEGVPSYLIAGVSLL 94
             + + +G+G    V+ C + E   +  +K           ++ + +    +        
Sbjct: 2   DAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRS 60

Query: 95  KELEHDNIVRLLDVLTTGRY----VYLVFEYLDLDLGSFIRKHTITSI 138
              E   + +L  +     Y      ++ E +D      +R      +
Sbjct: 61  ARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEV 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.98
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.98
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.98
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.98
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.98
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.98
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.98
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.97
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.97
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.97
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.97
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.97
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.97
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.97
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.97
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.97
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.97
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.97
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.97
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.97
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.97
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.97
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.96
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.96
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.96
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.96
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.96
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.96
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.96
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.96
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.96
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.96
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.96
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.96
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.95
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.95
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.95
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.95
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.95
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.95
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.95
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.94
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.94
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.94
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.93
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.87
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.03
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	95.43
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	93.19
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	92.8

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=227.54  Aligned_cols=159  Identities=26%  Similarity=0.425  Sum_probs=130.9

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ..++|++.+.||+|+||.||+|+++.+++.||+|++.+.. ......+.+.+|+.++++++||||+++++++.+.+.+|+
T Consensus         4 ~l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i   83 (263)
T d2j4za1           4 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   83 (263)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             chhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEE
Confidence            4578999999999999999999999999999999987543 234556789999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccCC-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVGS-----------  147 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g~-----------  147 (218)
                      |||||++ +|.+++......                           |++|.+           .+||.           
T Consensus        84 vmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~  163 (263)
T d2j4za1          84 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT  163 (263)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEE
T ss_pred             EEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCcccc
Confidence            9999987 999988765432                           444433           23332           


Q ss_pred             -----cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          148 -----PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       148 -----~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                           .|+|||. ..+..++.++|||||||++|+|++|+.||.+.+...+...+..
T Consensus       164 ~~Gt~~Y~APE~-~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~  218 (263)
T d2j4za1         164 LCGTLDYLPPEM-IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISR  218 (263)
T ss_dssp             TTEEGGGCCHHH-HTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHT
T ss_pred             cCCCCcccCHHH-HcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHc
Confidence                 3999995 4556689999999999999999999999998766655554443

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=230.30  Aligned_cols=159  Identities=25%  Similarity=0.446  Sum_probs=130.0

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ...++|++.+.||+|+||.||+|+++.+++.||||++.+.. ......+.+.+|+.++++++||||+++++++.+.+.+|
T Consensus         5 ~~p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~   84 (288)
T d1uu3a_           5 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY   84 (288)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEE
T ss_pred             CCCCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEE
Confidence            44578999999999999999999999999999999997543 23455688999999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc-------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE-------------  144 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~-------------  144 (218)
                      +|||||++ +|.+++......                           +++|.+           .+             
T Consensus        85 ivmEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~  164 (288)
T d1uu3a_          85 FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ  164 (288)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EEEEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCcc
Confidence            99999997 898887765432                           333332           12             


Q ss_pred             ------cCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          145 ------VGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       145 ------~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                            .|+ .|+|||.+ .+..++.++|||||||++|+|++|+.||.+.+...+...+.
T Consensus       165 ~~~~~~~GT~~Y~APE~~-~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~  223 (288)
T d1uu3a_         165 ARANSFVGTAQYVSPELL-TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII  223 (288)
T ss_dssp             -----CCCCGGGCCHHHH-HTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             cccccccCCccccCceee-ccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHH
Confidence                  233 39999954 55568999999999999999999999999876555554444

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-34  Score=226.50  Aligned_cols=176  Identities=30%  Similarity=0.458  Sum_probs=133.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--CCEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--GRYVYL  117 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~l  117 (218)
                      .++|++++.||+|+||.||+|+++.+|+.||+|.+......+...+.+.+|+.++++++||||+++++++.+  .+.+|+
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            578999999999999999999999999999999998665555556789999999999999999999999864  456899


Q ss_pred             EEecCCC-ChHHHhhhcc-----cC-------------------------------Cccccc-----------c------
Q 041487          118 VFEYLDL-DLGSFIRKHT-----IT-------------------------------SIRPHI-----------K------  143 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~-----~~-------------------------------~~~~~~-----------~------  143 (218)
                      |||||++ +|.+++....     ..                               +++|.+           .      
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            9999987 9988875421     10                               333332           1      


Q ss_pred             -----------ccCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCcccc----
Q 041487          144 -----------EVGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTNYLV----  207 (218)
Q Consensus       144 -----------~~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~----  207 (218)
                                 ..|+ .|+|||.+ .+..++.++|||||||++|+|+||+.||.+.+...+...+.....+..+..    
T Consensus       163 ~~~~~~~~~~~~~gt~~Y~APE~l-~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~s~~  241 (269)
T d2java1         163 ILNHDTSFAKAFVGTPYYMSPEQM-NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDE  241 (269)
T ss_dssp             HC-----------CCCSCCCHHHH-TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHH
T ss_pred             ecccCCCccccCCCCcccCCHHHH-cCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHH
Confidence                       1233 39999954 556689999999999999999999999998766666555554433333333    


Q ss_pred             hhhhhhhcc
Q 041487          208 LPCFLSIML  216 (218)
Q Consensus       208 ~~~~~~~~l  216 (218)
                      +-+++..||
T Consensus       242 l~~li~~~L  250 (269)
T d2java1         242 LNEIITRML  250 (269)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            344455554

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=223.87  Aligned_cols=157  Identities=27%  Similarity=0.397  Sum_probs=127.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .+.|++++.||+|+||.||+|.++.+|+.||+|++++.....    ...+.+.+|+.++++++||||+++++++.+.+.+
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            467999999999999999999999999999999997654322    3467899999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC---------------------------Cccccc---------------cccCC-----
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI---------------KEVGS-----  147 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~---------------~~~g~-----  147 (218)
                      |+|||||++ +|.+++......                           +++|.+               .++|.     
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~  168 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  168 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECT
T ss_pred             EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcC
Confidence            999999987 999998765432                           233222               22222     


Q ss_pred             ------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          148 ------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       148 ------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                  .|+|||. ..+..++.++|||||||++|+|++|+.||.+.+.......+.
T Consensus       169 ~~~~~~~~~~t~~y~APE~-~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~  229 (293)
T d1jksa_         169 FGNEFKNIFGTPEFVAPEI-VNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVS  229 (293)
T ss_dssp             TSCBCSCCCCCGGGCCHHH-HTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             CCccccccCCCCcccCHHH-HcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence                        3999995 455668999999999999999999999999875555444443

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-34  Score=224.26  Aligned_cols=147  Identities=27%  Similarity=0.499  Sum_probs=119.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++++.||+|+||.||+|+++.+++.||+|++..... ....+.+.+|+.++++++||||+++++++.+.+.+|+||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivm   82 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   82 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-chHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEE
Confidence            3679999999999999999999999999999999975432 233467899999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc---------------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV---------------  145 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~---------------  145 (218)
                      |||++ +|.+++......                           |++|.+           .+|               
T Consensus        83 Ey~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~  162 (271)
T d1nvra_          83 EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL  162 (271)
T ss_dssp             ECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCB
T ss_pred             eccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccc
Confidence            99987 999998654332                           333332           222               


Q ss_pred             ----CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ----GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ----g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                          |+ .|+|||.+.....++.++|||||||++|+|+||+.||...
T Consensus       163 ~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~  209 (271)
T d1nvra_         163 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  209 (271)
T ss_dssp             CCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSS
T ss_pred             cceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCC
Confidence                33 3999997665554577899999999999999999999876

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=222.44  Aligned_cols=155  Identities=24%  Similarity=0.399  Sum_probs=125.6

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      +.|++++.||+|+||.||+|+++.+++.||+|+++..  .....+.+.+|+.++++++||||+++++++.+.+.+++|||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmE   89 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTK--SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   89 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEe
Confidence            4589999999999999999999999999999999754  33446789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhccc--C--------------------------Cccccc-----------cccCC-------------
Q 041487          121 YLDL-DLGSFIRKHTI--T--------------------------SIRPHI-----------KEVGS-------------  147 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~--~--------------------------~~~~~~-----------~~~g~-------------  147 (218)
                      ||++ +|.+++.....  .                          +++|.+           .+||.             
T Consensus        90 y~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~  169 (288)
T d2jfla1          90 FCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS  169 (288)
T ss_dssp             CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTC
T ss_pred             cCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcccccc
Confidence            9987 88888765322  1                          444432           33332             


Q ss_pred             -----cccCccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          148 -----PYKAPESRI----RSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       148 -----~y~aPE~~~----~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                           .|+|||.+.    ....|+.++|||||||++|+|+||+.||.+.+.......+.
T Consensus       170 ~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~  228 (288)
T d2jfla1         170 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIA  228 (288)
T ss_dssp             CCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHH
T ss_pred             cccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHH
Confidence                 299999653    34558999999999999999999999998875544444333

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-33  Score=223.04  Aligned_cols=147  Identities=29%  Similarity=0.544  Sum_probs=122.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .+|++++.||+|+||.||+|.++.+|+.||+|+++....  ...+.+.+|+.++++++||||+++++++...+.+|+|||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE   97 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccC--hHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEE
Confidence            469999999999999999999999999999999975432  335789999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC--------------------------Cccccc-----------ccc-----------------
Q 041487          121 YLDL-DLGSFIRKHTIT--------------------------SIRPHI-----------KEV-----------------  145 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~--------------------------~~~~~~-----------~~~-----------------  145 (218)
                      ||++ +|.+++......                          |++|.+           .+|                 
T Consensus        98 y~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~  177 (293)
T d1yhwa1          98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV  177 (293)
T ss_dssp             CCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCC
T ss_pred             ecCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccc
Confidence            9987 888887654432                          344432           222                 


Q ss_pred             CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          146 GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       146 g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                      |+ .|+|||.+ .++.++.++|||||||++|+|+||+.||.+.+..
T Consensus       178 gt~~Y~aPE~~-~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~  222 (293)
T d1yhwa1         178 GTPYWMAPEVV-TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL  222 (293)
T ss_dssp             SCGGGCCHHHH-SSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             cCCCccChhhh-cCCCCCchhceehHhHHHHHHhhCCCCCCCCCHH
Confidence            32 29999954 5566899999999999999999999999876433

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-33  Score=226.53  Aligned_cols=156  Identities=26%  Similarity=0.388  Sum_probs=121.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .+.|++.+.||+|+||.||+|.++.+++.||+|++.+..... ..+.+.+|+.++++++||||+++++++.+++.+|+||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvm   86 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG-KEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIM   86 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh-HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            466999999999999999999999999999999998654332 3456889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC---------------------------Cccccc--------------cccCC----------
Q 041487          120 EYLDL-DLGSFIRKHTIT---------------------------SIRPHI--------------KEVGS----------  147 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~---------------------------~~~~~~--------------~~~g~----------  147 (218)
                      |||++ +|.+++......                           +++|.+              .+||.          
T Consensus        87 E~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~  166 (307)
T d1a06a_          87 QLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVL  166 (307)
T ss_dssp             CCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC------------
T ss_pred             eccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCee
Confidence            99986 999998765332                           333332              23322          


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                             .|+|||. ..+..++.++|||||||++|+|++|+.||.+.....+...+.
T Consensus       167 ~~~~GT~~y~APE~-~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~  222 (307)
T d1a06a_         167 STACGTPGYVAPEV-LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQIL  222 (307)
T ss_dssp             ------CTTSCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             eeeeeCccccCcHH-HcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence                   3999995 555668999999999999999999999999875555444443

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-33  Score=226.36  Aligned_cols=160  Identities=21%  Similarity=0.355  Sum_probs=132.6

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      +..++|++++.||+|+||.||+|+++.+++.||+|++++.. ......+.+.+|+.++++++||||+++++++.+...+|
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            45678999999999999999999999999999999997643 23455788999999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc-------------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE-------------  144 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~-------------  144 (218)
                      +|||||++ +|.+++......                           +++|.+           .+             
T Consensus        82 iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~  161 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             cceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCcc
Confidence            99999997 888888765432                           333332           22             


Q ss_pred             ----cCC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          145 ----VGS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       145 ----~g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                          +|+ .|+|||. ..+..|+.++|||||||++|+|++|++||.+.+...+...+..
T Consensus       162 ~~~~~GT~~Y~aPE~-~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~  219 (337)
T d1o6la_         162 MKTFCGTPEYLAPEV-LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILM  219 (337)
T ss_dssp             BCCCEECGGGCCGGG-GSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             cccceeCHHHhhhhh-ccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhc
Confidence                232 3999994 5566689999999999999999999999999877777666655

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=225.33  Aligned_cols=152  Identities=22%  Similarity=0.405  Sum_probs=127.2

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ++..++|++++.||+|+||.||+|.++.+++.||+|+++.. ......+.+.+|+.+++.++||||++++++|.+.+.+|
T Consensus         2 el~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~-~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~   80 (322)
T d1s9ja_           2 ELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE-IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS   80 (322)
T ss_dssp             CCCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECC-CCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEE
T ss_pred             CCCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChh-hCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            35678999999999999999999999999999999999754 34455678999999999999999999999999999999


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccCC---------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS---------  147 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~---------  147 (218)
                      +||||+++ +|.+++.+....                            |++|.+           .+||.         
T Consensus        81 iVmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~  160 (322)
T d1s9ja_          81 ICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA  160 (322)
T ss_dssp             EEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC
T ss_pred             EEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCcc
Confidence            99999997 898888654332                            444443           33333         


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                             .|+|||.+. +..|+.++||||+||++|||++|+.||.+.+..
T Consensus       161 ~~~~GT~~Y~APEvl~-~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~  209 (322)
T d1s9ja_         161 NSFVGTRSYMSPERLQ-GTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAK  209 (322)
T ss_dssp             ---CCSSCCCCHHHHH-CSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTT
T ss_pred             ccccCCccccCchHHc-CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence                   299999654 556999999999999999999999999876443

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-33  Score=223.74  Aligned_cols=177  Identities=19%  Similarity=0.299  Sum_probs=136.4

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .++|++++.||+|+||.||+|+++.+|+.||+|++++.. ......+.+.+|+.+++.++||||+++++++.+.+.+|+|
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            468999999999999999999999999999999997543 2345578899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc--------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV--------------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~--------------  145 (218)
                      ||||++ +|..++......                           +++|.+           .+|              
T Consensus        83 mE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~  162 (316)
T d1fota_          83 MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLC  162 (316)
T ss_dssp             ECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCC
T ss_pred             eeecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEecccccccc
Confidence            999987 666666554332                           444433           222              


Q ss_pred             CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccC---cccchhhhhhhccc
Q 041487          146 GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALT---NYLVLPCFLSIMLL  217 (218)
Q Consensus       146 g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~  217 (218)
                      |+ .|+|||. ..+..++.++|||||||++|+|+||+.||.+.+...+...+.......   .+..+.+++..||.
T Consensus       163 Gt~~Y~APE~-l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  237 (316)
T d1fota_         163 GTPDYIAPEV-VSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLIT  237 (316)
T ss_dssp             SCTTTCCHHH-HTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CcccccCHHH-HcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhh
Confidence            32 3999995 556668999999999999999999999999876655555444322221   13344555666653

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2.5e-32  Score=223.08  Aligned_cols=156  Identities=21%  Similarity=0.346  Sum_probs=126.5

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++++.||+|+||.||+|+++.+|+.||+|++....  ....+.+.+|+.++++++||||+++++++.+.+.+|+||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm  102 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY  102 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc--hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            468999999999999999999999999999999986432  233577899999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Cccccc-------------cccCC----------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPHI-------------KEVGS----------  147 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-------------~~~g~----------  147 (218)
                      |||++ +|.+++......                            +++|.+             .+||.          
T Consensus       103 E~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~  182 (350)
T d1koaa2         103 EFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV  182 (350)
T ss_dssp             CCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE
T ss_pred             EcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccccc
Confidence            99987 999988543221                            333332             23332          


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             .|+|||. ..+..++.++|||||||++|+|++|+.||.+.+...+...+..
T Consensus       183 ~~~~gT~~Y~aPEv-~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~  239 (350)
T d1koaa2         183 KVTTGTAEFAAPEV-AEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKS  239 (350)
T ss_dssp             EEECSCTTTCCHHH-HHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             ceecCcccccCHHH-HcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence                   3999995 4556689999999999999999999999998755555444443

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.5e-32  Score=217.89  Aligned_cols=154  Identities=23%  Similarity=0.383  Sum_probs=123.5

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC----C
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG----R  113 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~----~  113 (218)
                      ..++|++.+.||+|+||.||+|+++.+++.||+|++++.... ....+.+.+|+.+++.++||||+++++++...    .
T Consensus         5 l~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~   84 (277)
T d1o6ya_           5 LSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP   84 (277)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSE
T ss_pred             ccceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCc
Confidence            357899999999999999999999999999999999865433 34466899999999999999999999998753    3


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC---------------------------Ccccccc-----------c----------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHIK-----------E----------  144 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~~-----------~----------  144 (218)
                      .+|+||||+++ +|.+++......                           +++|.+.           +          
T Consensus        85 ~~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~  164 (277)
T d1o6ya_          85 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADS  164 (277)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC--
T ss_pred             eEEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhccc
Confidence            58999999997 888887665432                           4445431           1          


Q ss_pred             ----------cC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHH
Q 041487          145 ----------VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLS  193 (218)
Q Consensus       145 ----------~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~  193 (218)
                                .| ..|+|||. ..+..++.++|||||||++|+|+||++||.+.+...+.
T Consensus       165 ~~~~~~~~~~~Gt~~Y~aPE~-~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~  223 (277)
T d1o6ya_         165 GNSVTQTAAVIGTAQYLSPEQ-ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA  223 (277)
T ss_dssp             --------------TTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             cccccccccccCcccccCHHH-HcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHH
Confidence                      12 23999995 45666899999999999999999999999987544443

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.1e-32  Score=222.71  Aligned_cols=157  Identities=24%  Similarity=0.370  Sum_probs=126.8

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ..++|++++.||+|+||.||+|.++.+|+.||+|+++...  ....+.+.+|+.++++++||||++++++|.+++.+|+|
T Consensus        27 ~~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          27 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc--hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            3567999999999999999999999999999999987532  22346788999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Cccccc-------------cccCCc--------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-------------KEVGSP--------  148 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-------------~~~g~~--------  148 (218)
                      ||||++ +|.+++......                            +++|.+             .+||.+        
T Consensus       105 mE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~  184 (352)
T d1koba_         105 LEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI  184 (352)
T ss_dssp             EECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred             EEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCc
Confidence            999997 898887654321                            344432             334332        


Q ss_pred             ---------ccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          149 ---------YKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       149 ---------y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                               |+|||. ..+..++.++|||||||++|+|+||+.||.+.+...+...+..
T Consensus       185 ~~~~~gt~~y~aPE~-~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~  242 (352)
T d1koba_         185 VKVTTATAEFAAPEI-VDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKR  242 (352)
T ss_dssp             EEEECSSGGGCCHHH-HTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHH
T ss_pred             eeeccCcccccCHHH-HcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence                     899995 5566699999999999999999999999998755554444443

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.9e-32  Score=214.64  Aligned_cols=152  Identities=25%  Similarity=0.380  Sum_probs=120.2

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe----CCEEEEE
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT----GRYVYLV  118 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv  118 (218)
                      |++.++||+|+||.||+|+++.+++.||+|.+..........+.+.+|+.++++++||||+++++++..    ...+|+|
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEE
Confidence            377889999999999999999999999999998655555556789999999999999999999999864    4679999


Q ss_pred             EecCCC-ChHHHhhhcccC-----------------------------Cccccc------------ccc-----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI------------KEV-----------  145 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~------------~~~-----------  145 (218)
                      ||||++ +|.+++......                             |++|.+            .+|           
T Consensus        91 mE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~  170 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA  170 (270)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSB
T ss_pred             EeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCcc
Confidence            999987 998888664322                             333332            222           


Q ss_pred             ----CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHH
Q 041487          146 ----GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIV  196 (218)
Q Consensus       146 ----g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~  196 (218)
                          |+ .|+|||.+ .+ .++.++|||||||++|+|++|+.||... +...+...+
T Consensus       171 ~~~~GT~~Y~aPE~~-~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i  225 (270)
T d1t4ha_         171 KAVIGTPEFMAPEMY-EE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRV  225 (270)
T ss_dssp             EESCSSCCCCCGGGG-GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHH
T ss_pred             CCcccCccccCHHHh-CC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHH
Confidence                22 39999965 44 4899999999999999999999999865 333333333

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.3e-32  Score=224.95  Aligned_cols=177  Identities=22%  Similarity=0.291  Sum_probs=137.7

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      .++|++++.||+|+||.||+|+++.+|+.||||++.+.. ......+.+.+|+.+++.++||||+++++++.....+++|
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            478999999999999999999999999999999997543 2345567899999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccCC------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVGS------------  147 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g~------------  147 (218)
                      |||+.+ +|.+++......                           +++|.+           .+||.            
T Consensus       120 ~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~  199 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLC  199 (350)
T ss_dssp             EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCE
T ss_pred             cccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccccccccc
Confidence            999987 888887664332                           444433           33333            


Q ss_pred             ---cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHhcccCc---ccchhhhhhhccc
Q 041487          148 ---PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYFTALTN---YLVLPCFLSIMLL  217 (218)
Q Consensus       148 ---~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~  217 (218)
                         .|+|||. ..+..++.++|||||||++|+|+||+.||.+.+...+...+.......+   +..+.+++..||.
T Consensus       200 Gt~~Y~APE~-~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  274 (350)
T d1rdqe_         200 GTPEALAPEI-ILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQ  274 (350)
T ss_dssp             ECGGGCCHHH-HTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSC
T ss_pred             CccccCCHHH-HcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhh
Confidence               2999995 4566689999999999999999999999998765555554444322221   3345556666553

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.5e-32  Score=220.86  Aligned_cols=149  Identities=22%  Similarity=0.329  Sum_probs=118.8

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      .|+.++.||+|+||.||+|+++.+++.||||+++..... ....+.+.+|+.++++++||||+++++++.+.+.+|+|||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            499999999999999999999999999999999754432 3445678999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC-------------C-
Q 041487          121 YLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG-------------S-  147 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g-------------~-  147 (218)
                      ||.+ +|..+.......                           +++|.+           .+||             + 
T Consensus        96 ~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~GT~  175 (309)
T d1u5ra_          96 YCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTP  175 (309)
T ss_dssp             CCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCG
T ss_pred             ecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCCCccccCc
Confidence            9987 444444332221                           444433           2333             2 


Q ss_pred             cccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          148 PYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       148 ~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                      .|+|||.+..  .+.|+.++|||||||++|+|++|+.||.+.+..
T Consensus       176 ~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~  220 (309)
T d1u5ra_         176 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM  220 (309)
T ss_dssp             GGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             cccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHH
Confidence            3999997643  345899999999999999999999999876433

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.4e-32  Score=219.88  Aligned_cols=158  Identities=22%  Similarity=0.338  Sum_probs=126.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCC-CCCCchHHHHHHHHHHh-hCCCCCeeeeeeeEEeCCEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-EPEGVPSYLIAGVSLLK-ELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~-~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      ++|.+++.||+|+||.||+|+++.+++.||||++++.. ......+.+..|..++. .++||||+++++++.+++.+|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            68999999999999999999999999999999997543 22344566667766655 68999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cc---------------
Q 041487          119 FEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KE---------------  144 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~---------------  144 (218)
                      |||+++ +|.+++......                           +++|.+           .+               
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~  161 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTN  161 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBC
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhccccccccc
Confidence            999987 999988765432                           333322           11               


Q ss_pred             --cC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHh
Q 041487          145 --VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRYF  199 (218)
Q Consensus       145 --~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~~  199 (218)
                        .| ..|+|||.+ .+..++.++|||||||++|+|+||+.||.+.+...+...+...
T Consensus       162 ~~~gt~~y~aPE~~-~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~  218 (320)
T d1xjda_         162 TFCGTPDYIAPEIL-LGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMD  218 (320)
T ss_dssp             CCCSCGGGCCHHHH-TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred             ccCCCCCcCCHHHH-cCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcC
Confidence              22 239999954 5566899999999999999999999999988777766666543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.9e-32  Score=216.51  Aligned_cols=163  Identities=46%  Similarity=0.747  Sum_probs=128.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++++.||+|+||.||+|+++.+++.||+|+++.....+...+.+.+|+.++++++||||+++++++.+...+|+|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            68999999999999999999999999999999997655555567889999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC-----------------------------Cccccc-----------ccc---------------
Q 041487          121 YLDLDLGSFIRKHTIT-----------------------------SIRPHI-----------KEV---------------  145 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~-----------------------------~~~~~~-----------~~~---------------  145 (218)
                      |+.+++.+++......                             |++|.+           .++               
T Consensus        82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~  161 (298)
T d1gz8a_          82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTH  161 (298)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTC
T ss_pred             ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCccccee
Confidence            9988766665433211                             444443           122               


Q ss_pred             ---CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccC
Q 041487          146 ---GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALT  203 (218)
Q Consensus       146 ---g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~  203 (218)
                         +..|+|||.+.....++.++||||+||++|+|++|+.||.+. ..+.+..+.+..+.+.
T Consensus       162 ~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~  223 (298)
T d1gz8a_         162 EVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD  223 (298)
T ss_dssp             CBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             ecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCc
Confidence               234999997777777889999999999999999999999877 3455666666555443

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.4e-32  Score=219.35  Aligned_cols=154  Identities=25%  Similarity=0.431  Sum_probs=126.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      .++|++.+.||+|+||.||+|.++.+++.||+|+++..   ......+.+|+.+++.++||||++++++|.+.+.+|+||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~---~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvm   80 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIF   80 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCC---cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence            47899999999999999999999999999999999753   223457889999999999999999999999999999999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Cccccc-------------cccCC----------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPHI-------------KEVGS----------  147 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-------------~~~g~----------  147 (218)
                      |||++ +|.+++......                            +++|.+             .+||.          
T Consensus        81 E~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~  160 (321)
T d1tkia_          81 EFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF  160 (321)
T ss_dssp             CCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE
T ss_pred             ecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCcc
Confidence            99997 999998765321                            344432             22322          


Q ss_pred             -------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          148 -------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       148 -------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                             .|+|||. ..+..++.++|||||||++|+|++|+.||.+.+...+...+.
T Consensus       161 ~~~~~t~~y~ape~-~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~  216 (321)
T d1tkia_         161 RLLFTAPEYYAPEV-HQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIM  216 (321)
T ss_dssp             EEEESCGGGSCHHH-HTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH
T ss_pred             cccccccccccchh-ccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence                   3899994 555668999999999999999999999999876555444443

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=4.3e-32  Score=222.82  Aligned_cols=160  Identities=24%  Similarity=0.401  Sum_probs=125.2

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCC-CCCchHHHHH---HHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNE-PEGVPSYLIA---GVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~---e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..++|++++.||+|+||.||+|+++.+|+.||+|++.+... .......+.+   ++.+++.++||||+++++++...+.
T Consensus         2 slddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~   81 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK   81 (364)
T ss_dssp             CSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred             CHHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCE
Confidence            35789999999999999999999999999999999875431 1122233334   4667778899999999999999999


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC---------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG---------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g---------  146 (218)
                      +|+|||||++ +|.+++......                           +++|.+           .+||         
T Consensus        82 ~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~  161 (364)
T d1omwa3          82 LSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK  161 (364)
T ss_dssp             EEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC
T ss_pred             EEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCCc
Confidence            9999999986 999988765432                           344432           2333         


Q ss_pred             -------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHH
Q 041487          147 -------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       147 -------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~~  198 (218)
                             ..|+|||.+..+..++.++|||||||++|+|+||+.||...+......+.+.
T Consensus       162 ~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~  220 (364)
T d1omwa3         162 PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM  220 (364)
T ss_dssp             CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHH
T ss_pred             ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence                   2399999776677799999999999999999999999988755544444443

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.9e-32  Score=212.15  Aligned_cols=160  Identities=26%  Similarity=0.361  Sum_probs=124.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEE
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  117 (218)
                      ++.++|++++.||+|+||.||+|.++ ++..||||.++..   ....+.+.+|+.++++++||||+++++++...+..++
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~---~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~l   77 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREG---AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL   77 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEET-TTEEEEEEECCSS---SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCC---cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEE
Confidence            45678999999999999999999875 5678999998643   2334779999999999999999999999999999999


Q ss_pred             EEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC-----------
Q 041487          118 VFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG-----------  146 (218)
Q Consensus       118 v~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g-----------  146 (218)
                      ||||+++ +|.+++......                            +++|.+           .+||           
T Consensus        78 v~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~  157 (263)
T d1sm2a_          78 VFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  157 (263)
T ss_dssp             EEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-----------
T ss_pred             EEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCce
Confidence            9999987 899987654322                            333322           2232           


Q ss_pred             --------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhccc
Q 041487          147 --------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTAL  202 (218)
Q Consensus       147 --------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~  202 (218)
                              ..|+|||.+ .+..++.++|||||||++|||+| |++||.......+...+.....+
T Consensus       158 ~~~~~~gt~~y~aPE~l-~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~  221 (263)
T d1sm2a_         158 SSTGTKFPVKWASPEVF-SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRL  221 (263)
T ss_dssp             -------CTTSCCHHHH-TTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCC
T ss_pred             eecceecCcccCChHHh-cCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCC
Confidence                    239999954 55568999999999999999999 57777766655555555544333

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-32  Score=213.14  Aligned_cols=166  Identities=22%  Similarity=0.328  Sum_probs=127.7

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLV  118 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  118 (218)
                      +.++|+++++||+|+||.||+|+++ +++.||||.++...   ...+.+.+|+.++++++||||+++++++.+++.+++|
T Consensus         2 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~---~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv   77 (258)
T d1k2pa_           2 DPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGS---MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII   77 (258)
T ss_dssp             CCCCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSS---SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEE
T ss_pred             ChHHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCc---CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEE
Confidence            4678999999999999999999974 77899999998543   2347799999999999999999999999999999999


Q ss_pred             EecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccCC-----------
Q 041487          119 FEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVGS-----------  147 (218)
Q Consensus       119 ~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g~-----------  147 (218)
                      |||+++ +|.+++......                            ++++.           +.++|.           
T Consensus        78 ~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~  157 (258)
T d1k2pa_          78 TEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS  157 (258)
T ss_dssp             EECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCC
T ss_pred             EEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCcee
Confidence            999986 778775543221                            22221           222222           


Q ss_pred             --------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchh
Q 041487          148 --------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       148 --------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                              .|+|||. ..++.++.++|||||||++|||+| |+.||.+.+...+...+.....++.+...|
T Consensus       158 ~~~~~~t~~y~aPE~-~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~  227 (258)
T d1k2pa_         158 SVGSKFPVRWSPPEV-LMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLAS  227 (258)
T ss_dssp             CCCSCCCGGGCCHHH-HHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCC
T ss_pred             ecccCCCCCcCCcHH-hcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCccccc
Confidence                    2899995 445568999999999999999998 899999887666666655543443333333

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.2e-32  Score=216.96  Aligned_cols=164  Identities=22%  Similarity=0.375  Sum_probs=129.1

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYV  115 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  115 (218)
                      .++..++|++.+.||+|+||.||+|.++.+++.||||.++..   ....+.+.+|+.++++++||||+++++++.+.+.+
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~---~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF   88 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT---CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc---cchHHHHHHHHHHHHhCCCCCEecCCccEeeCCee
Confidence            457788999999999999999999999999999999998643   33457899999999999999999999999999999


Q ss_pred             EEEEecCCC-ChHHHhhhcccC-----------------------------Ccccc-----------ccccCC-------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPH-----------IKEVGS-------  147 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~-----------~~~~g~-------  147 (218)
                      +++||||++ +|.+++......                             +++|.           +.+||.       
T Consensus        89 ~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~  168 (287)
T d1opja_          89 YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  168 (287)
T ss_dssp             EEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSS
T ss_pred             EEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCC
Confidence            999999986 888887653221                             33332           233332       


Q ss_pred             ------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCC-CCCCCCcchHHHHHHHhcccC
Q 041487          148 ------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKP-LFPCGKKDHLSLIVRYFTALT  203 (218)
Q Consensus       148 ------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~-Pf~~~~~~~~~~~~~~~~~~~  203 (218)
                                  .|+|||.+. ++.++.++|||||||++|||++|.. ||.+.+...+...+.....++
T Consensus       169 ~~~~~~~~~g~~~y~aPE~~~-~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~  236 (287)
T d1opja_         169 TYTAHAGAKFPIKWTAPESLA-YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME  236 (287)
T ss_dssp             SSEEETTEEECGGGCCHHHHH-HCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCC
T ss_pred             CceeeccccccccccChHHHc-CCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCC
Confidence                        399999654 4558999999999999999999655 555556666666555433333

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.7e-32  Score=216.68  Aligned_cols=175  Identities=23%  Similarity=0.361  Sum_probs=130.1

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCc---EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGK---KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~---~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ++..++|++.+.||+|+||.||+|.++.++.   .||||.+.... .....+.+.+|+.++++++|||||++++++...+
T Consensus        22 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~  100 (299)
T d1jpaa_          22 EIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY-TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST  100 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             hhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECccc-CHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence            3567889999999999999999999876654   58888876432 3334568999999999999999999999999999


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccCC------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVGS------  147 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g~------  147 (218)
                      .+++|||||++ +|.+++......                            +++|.           +.+||.      
T Consensus       101 ~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~  180 (299)
T d1jpaa_         101 PVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED  180 (299)
T ss_dssp             SCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccC
Confidence            99999999997 888887664321                            33332           233332      


Q ss_pred             -----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchh
Q 041487          148 -----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       148 -----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                       .|+|||.+ .++.++.++|||||||++|||+| |+.||.......+...+.....++.+...|
T Consensus       181 ~~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  259 (299)
T d1jpaa_         181 DTSDPTYTSALGGKIPIRWTAPEAI-QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCP  259 (299)
T ss_dssp             ---------------CGGGSCHHHH-HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCC
T ss_pred             CCCcceeeecccccCCccccCHHHH-hcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccch
Confidence                             39999954 45568999999999999999998 899998876665555555444444444444


Q ss_pred             hhhh
Q 041487          210 CFLS  213 (218)
Q Consensus       210 ~~~~  213 (218)
                      ..+.
T Consensus       260 ~~l~  263 (299)
T d1jpaa_         260 SALH  263 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.97  E-value=8.2e-31  Score=207.69  Aligned_cols=158  Identities=25%  Similarity=0.468  Sum_probs=126.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCC-------chHHHHHHHHHHhhCC-CCCeeeeeeeEEe
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEG-------VPSYLIAGVSLLKELE-HDNIVRLLDVLTT  111 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~-------~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~  111 (218)
                      .++|++.+.||+|+||+||+|+++.+++.||+|++++......       ..+.+.+|+.++++++ ||||+++++++.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            4689999999999999999999999999999999986553322       2346889999999996 9999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccC------
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVG------  146 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g------  146 (218)
                      .+.+|+|||||++ +|.+++......                           +++|.+           .++|      
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~  161 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD  161 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEcc
Confidence            9999999999987 999999765442                           333322           2222      


Q ss_pred             -----------CcccCcccccC-----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 041487          147 -----------SPYKAPESRIR-----SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHLSLIVR  197 (218)
Q Consensus       147 -----------~~y~aPE~~~~-----~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~~~~~~  197 (218)
                                 ..|+|||.+..     ...++.++||||+||++|+|++|+.||.+.+.......+.
T Consensus       162 ~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~  228 (277)
T d1phka_         162 PGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIM  228 (277)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             CCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHH
Confidence                       23899996542     3447889999999999999999999999886555444443

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-31  Score=212.22  Aligned_cols=170  Identities=21%  Similarity=0.284  Sum_probs=125.9

Q ss_pred             hhccceeEEEE-eeecCceEEEEEEEcc--CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           38 VKDWNYKVVEK-IGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        38 ~~~~~~~~~~~-ig~G~~g~v~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      +..++|.+.+. ||+|+||.||+|.++.  .+..||||.++.. ......+.+.+|+.++++++||||+++++++.. +.
T Consensus         5 l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~-~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~   82 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA   82 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SS
T ss_pred             ecccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChh-cCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-Ce
Confidence            45678888885 9999999999998764  4558999998743 233446789999999999999999999999865 45


Q ss_pred             EEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC--------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG--------  146 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g--------  146 (218)
                      +|+|||||++ +|.+++......                            +++|.+           .+||        
T Consensus        83 ~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~  162 (285)
T d1u59a_          83 LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD  162 (285)
T ss_dssp             EEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred             EEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhccccc
Confidence            8999999997 999987553221                            333322           2222        


Q ss_pred             -------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchhh
Q 041487          147 -------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLPC  210 (218)
Q Consensus       147 -------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (218)
                                   ..|+|||.+ ..+.++.++|||||||++|||+| |+.||...+...+...+.....++.+...|.
T Consensus       163 ~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~  239 (285)
T d1u59a_         163 DSYYTARSAGKWPLKWYAPECI-NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPP  239 (285)
T ss_dssp             SCEECCCCSSCCCGGGCCHHHH-HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCH
T ss_pred             ccccccccccccCccccChHHH-hCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCH
Confidence                         239999965 44558999999999999999998 9999998766555555554333433333443

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=212.18  Aligned_cols=158  Identities=24%  Similarity=0.356  Sum_probs=123.3

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVY  116 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  116 (218)
                      ++..++|++.+.||+|+||.||+|+.   +..||||+++.........+.+.+|+.++++++||||+++++++. .+.++
T Consensus         4 ei~~~~~~~~~~lG~G~fg~Vy~~~~---~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~   79 (276)
T d1uwha_           4 EIPDGQITVGQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLA   79 (276)
T ss_dssp             BCCTTCCCCCSEEEECSSCEEEEEES---SSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred             ccccccEEEEEEEeeCCCcEEEEEEE---CCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEE
Confidence            46678999999999999999999974   346999999876666667889999999999999999999999875 45689


Q ss_pred             EEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccC----------
Q 041487          117 LVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       117 lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g----------  146 (218)
                      +|||||++ +|.+++......                            +++|.+           .+||          
T Consensus        80 lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~  159 (276)
T d1uwha_          80 IVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG  159 (276)
T ss_dssp             EEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------
T ss_pred             EEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCC
Confidence            99999996 999998654321                            333322           2332          


Q ss_pred             ---------C-cccCcccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHH
Q 041487          147 ---------S-PYKAPESRIR--SSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRY  198 (218)
Q Consensus       147 ---------~-~y~aPE~~~~--~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~~  198 (218)
                               + .|+|||.+..  ...++.++|||||||++|||+||+.||.+.+. ..+...+..
T Consensus       160 ~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~  224 (276)
T d1uwha_         160 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGR  224 (276)
T ss_dssp             ------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHH
T ss_pred             cccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhc
Confidence                     2 3999997643  24488999999999999999999999987643 344444443

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-31  Score=211.90  Aligned_cols=159  Identities=32%  Similarity=0.598  Sum_probs=120.9

Q ss_pred             EEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC---CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEec
Q 041487           45 VVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP---EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEY  121 (218)
Q Consensus        45 ~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~  121 (218)
                      -++.||+|+||+||+|+++.+|+.||||+++.....   ....+.+.+|+.++++++||||+++++++..++.+|+||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            468999999999999999999999999999754322   23356789999999999999999999999999999999999


Q ss_pred             CCCChHHHhhhcccC----------------------------Cccccc-----------cc-----------------c
Q 041487          122 LDLDLGSFIRKHTIT----------------------------SIRPHI-----------KE-----------------V  145 (218)
Q Consensus       122 ~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~-----------------~  145 (218)
                      +.+++..++......                            |++|.+           .+                 .
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~  161 (299)
T d1ua2a_          82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQV  161 (299)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSC
T ss_pred             hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCccccccee
Confidence            987554444332211                            333332           11                 2


Q ss_pred             C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhcccC
Q 041487          146 G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTALT  203 (218)
Q Consensus       146 g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~~  203 (218)
                      | ..|+|||.+.....++.++|||||||++|+|+||++||.+. +.+.+..+.+..+.+.
T Consensus       162 gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~  221 (299)
T d1ua2a_         162 VTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPT  221 (299)
T ss_dssp             CCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCC
T ss_pred             cChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCC
Confidence            2 33999997777777899999999999999999999999877 5556666666655543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=211.34  Aligned_cols=164  Identities=21%  Similarity=0.330  Sum_probs=121.2

Q ss_pred             EEeeecCceEEEEEEEcc--CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           47 EKIGQGVFGEVYKCLNLE--TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        47 ~~ig~G~~g~v~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      ++||+|+||.||+|..+.  +++.||||+++.........+.+.+|+.++++++||||+++++++..+ ..++|||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEEcCCC
Confidence            479999999999998653  457899999976555555567899999999999999999999998654 57899999987


Q ss_pred             -ChHHHhhhcccC---------------------------Cccccc-----------ccc--------------------
Q 041487          125 -DLGSFIRKHTIT---------------------------SIRPHI-----------KEV--------------------  145 (218)
Q Consensus       125 -~L~~~~~~~~~~---------------------------~~~~~~-----------~~~--------------------  145 (218)
                       +|.+++......                           +++|.+           .++                    
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~  171 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGK  171 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----C
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccC
Confidence             999998765432                           333332           122                    


Q ss_pred             CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchhhhh
Q 041487          146 GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLPCFL  212 (218)
Q Consensus       146 g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (218)
                      |+ .|+|||.+. +..++.++|||||||++|||+| |+.||.+.+...+...+.....++.+...|..+
T Consensus       172 gt~~y~APE~l~-~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~  239 (277)
T d1xbba_         172 WPVKWYAPECIN-YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREM  239 (277)
T ss_dssp             CCGGGCCHHHHH-HCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHH
T ss_pred             CCceecCchhhc-CCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHH
Confidence            22 399999654 4558999999999999999998 899999886666666665444444444444433

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=208.79  Aligned_cols=165  Identities=27%  Similarity=0.459  Sum_probs=122.2

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ....++..++|++.+.||+|+||.||+|.++ ++..||||.++..   ....+.+.+|+.++++++||||+++++++.+ 
T Consensus         5 ~~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-   79 (272)
T d1qpca_           5 EDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQG---SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-   79 (272)
T ss_dssp             TCTTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTT---SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred             CCCeecCHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccC---cCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-
Confidence            3445577789999999999999999999974 5788999998643   2345789999999999999999999998754 


Q ss_pred             CEEEEEEecCCC-ChHHHhhhccc---C--------------------------Ccccc-----------ccccCC----
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPH-----------IKEVGS----  147 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~-----------~~~~g~----  147 (218)
                      +.+++||||+++ +|.+++.....   .                          +++|.           +.+||.    
T Consensus        80 ~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~  159 (272)
T d1qpca_          80 EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLI  159 (272)
T ss_dssp             SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEc
Confidence            557999999987 88877654321   1                          33332           223332    


Q ss_pred             ---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhC-CCCCCCCCcchHHHHHHHhcccC
Q 041487          148 ---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG-KPLFPCGKKDHLSLIVRYFTALT  203 (218)
Q Consensus       148 ---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg-~~Pf~~~~~~~~~~~~~~~~~~~  203 (218)
                                     .|+|||.+. .+.++.++|||||||++|||+|| .+||.......+...+.....++
T Consensus       160 ~~~~~~~~~~~~gt~~y~APE~~~-~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~  230 (272)
T d1qpca_         160 EDNEYTAREGAKFPIKWTAPEAIN-YGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMV  230 (272)
T ss_dssp             SSSCEECCTTCCCCTTTSCHHHHH-HCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC
T ss_pred             cCCccccccccCCcccccChHHHh-CCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC
Confidence                           399999654 45589999999999999999995 56666655555544444433333

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=1.7e-30  Score=206.78  Aligned_cols=161  Identities=43%  Similarity=0.705  Sum_probs=129.9

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++++.||+|+||.||+|+++ +++.||||+++.........+.+.+|+.++++++||||+++++++...+..+++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e   80 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE   80 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             CCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEE
Confidence            68999999999999999999985 78999999997665555667889999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcccC----------------------------Cccccc-----------ccc----------------
Q 041487          121 YLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEV----------------  145 (218)
Q Consensus       121 ~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~----------------  145 (218)
                      ++.+++...+......                            +++|.+           .++                
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~  160 (286)
T d1ob3a_          81 HLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHE  160 (286)
T ss_dssp             CCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--------
T ss_pred             eehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCcccccee
Confidence            9988665555432221                            444433           122                


Q ss_pred             --CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          146 --GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       146 --g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                        +..|+|||.+.....++.++||||+||++|+|++|+.||.+. +.+.+.++.+..+.+
T Consensus       161 ~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~  220 (286)
T d1ob3a_         161 IVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTP  220 (286)
T ss_dssp             -CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             cccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCC
Confidence              234999998777777899999999999999999999999876 445566666655544

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9e-31  Score=211.98  Aligned_cols=172  Identities=24%  Similarity=0.410  Sum_probs=127.6

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCCc-----EEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETGK-----KVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVL  109 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~-----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~  109 (218)
                      .++..++|++.+.||+|+||.||+|+++..++     .||+|.+.... .....+.+.+|+.++.++ +|||||++++++
T Consensus        32 wei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~  110 (325)
T d1rjba_          32 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGAC  110 (325)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc-CHHHHHHHHHHHHHHHHhcCCCcEeEEEEEE
Confidence            34667899999999999999999999875543     69999886433 334457789999999998 899999999999


Q ss_pred             EeCCEEEEEEecCCC-ChHHHhhhccc--------------------------------------------------CCc
Q 041487          110 TTGRYVYLVFEYLDL-DLGSFIRKHTI--------------------------------------------------TSI  138 (218)
Q Consensus       110 ~~~~~~~lv~E~~~~-~L~~~~~~~~~--------------------------------------------------~~~  138 (218)
                      ...+.+++|||||++ +|.+++.....                                                  .|+
T Consensus       111 ~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDl  190 (325)
T d1rjba_         111 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  190 (325)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             eeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            999999999999987 99999865421                                                  033


Q ss_pred             cccc-----------cccC--------------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCC
Q 041487          139 RPHI-----------KEVG--------------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPC  186 (218)
Q Consensus       139 ~~~~-----------~~~g--------------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~  186 (218)
                      +|.+           .+||                    ..|+|||.+. ++.++.++|||||||++|||+| |+.||.+
T Consensus       191 Kp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~  269 (325)
T d1rjba_         191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF-EGIYTIKSDVWSYGILLWEIFSLGVNPYPG  269 (325)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             chhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHc-CCCCCcceeccchhHHHHHHHhCCCCCCCC
Confidence            3332           2222                    2399999554 5558999999999999999998 8999988


Q ss_pred             CCc-chHHHHHHHhcccCcccchh
Q 041487          187 GKK-DHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       187 ~~~-~~~~~~~~~~~~~~~~~~~~  209 (218)
                      .+. ..+..+++....++.+...|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~p~~~~  293 (325)
T d1rjba_         270 IPVDANFYKLIQNGFKMDQPFYAT  293 (325)
T ss_dssp             CCCSHHHHHHHHTTCCCCCCTTCC
T ss_pred             CCHHHHHHHHHhcCCCCCCCCcCC
Confidence            643 44555555433443333333

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.5e-31  Score=206.01  Aligned_cols=167  Identities=26%  Similarity=0.387  Sum_probs=125.6

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-CCEE
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-GRYV  115 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~  115 (218)
                      .+..++|++++.||+|+||.||+|..  .|..||||.++.    ....+.+.+|+.++++++||||+++++++.+ .+.+
T Consensus         3 ~i~~~~~~~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~----~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~   76 (262)
T d1byga_           3 ALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKN----DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL   76 (262)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCC----CC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CC
T ss_pred             ccCHHHeEEeEEEecCCCeEEEEEEE--CCeEEEEEEECc----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcE
Confidence            46678899999999999999999987  578999999863    2345779999999999999999999999854 4568


Q ss_pred             EEEEecCCC-ChHHHhhhccc---C--------------------------Cccccc-----------ccc---------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPHI-----------KEV---------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~~-----------~~~---------  145 (218)
                      ++||||+++ +|.+++.....   .                          ++++.+           .++         
T Consensus        77 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~  156 (262)
T d1byga_          77 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  156 (262)
T ss_dssp             EEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred             EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC
Confidence            999999987 99999865431   1                          333322           122         


Q ss_pred             ------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchhh
Q 041487          146 ------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLPC  210 (218)
Q Consensus       146 ------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (218)
                            ...|+|||.+.+ +.++.++|||||||++|||+| |++||...+...+...+.....++.+...|.
T Consensus       157 ~~~~~~~~~y~aPE~l~~-~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~  227 (262)
T d1byga_         157 QDTGKLPVKWTAPEALRE-KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPP  227 (262)
T ss_dssp             -----CCTTTSCHHHHHH-CCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCH
T ss_pred             CccccccccCCChHHHhC-CCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCH
Confidence                  224999996554 558999999999999999998 7999988876666666554344443333333

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=212.50  Aligned_cols=159  Identities=33%  Similarity=0.605  Sum_probs=121.2

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC------
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR------  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------  113 (218)
                      .++|++++.||+|+||.||+|.++.+++.||||++++........+.+.+|+.+|+.++||||++++++|...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            67899999999999999999999999999999999865555555778999999999999999999999997554      


Q ss_pred             EEEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------cccC----------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEVG----------  146 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g----------  146 (218)
                      .+|+||||++.+|..+.......                          +++|.+           .++|          
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~  176 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT  176 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCC
T ss_pred             eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCCccc
Confidence            57999999976777766544332                          444433           2222          


Q ss_pred             -----CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHH
Q 041487          147 -----SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKK-DHLSLIVRY  198 (218)
Q Consensus       147 -----~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~-~~~~~~~~~  198 (218)
                           ..|+|||.+.....++.++||||+||++|+|++|+.||.+.+. +.+......
T Consensus       177 ~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~  234 (346)
T d1cm8a_         177 GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKV  234 (346)
T ss_dssp             SSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             cccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhc
Confidence                 2399999877777789999999999999999999999988743 333333333

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=205.58  Aligned_cols=174  Identities=21%  Similarity=0.344  Sum_probs=126.1

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccCC----cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLETG----KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG  112 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~----~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  112 (218)
                      ++..++|++.+.||+|+||.||+|..+.++    ..||||.++... .......+.+|+.++++++|||||++++++...
T Consensus         3 ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~   81 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY   81 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             cCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc-ChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecC
Confidence            466788999999999999999999987554    479999986432 233455789999999999999999999999999


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC------
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG------  146 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g------  146 (218)
                      ...+++|||+.+ ++.+++......                            +++|.           +.+||      
T Consensus        82 ~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~  161 (283)
T d1mqba_          82 KPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  161 (283)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             CceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhccc
Confidence            999999999987 666665543221                            33332           22232      


Q ss_pred             --------------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCC-CCCCCCCcchHHHHHHHhcccCcccchhh
Q 041487          147 --------------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK-PLFPCGKKDHLSLIVRYFTALTNYLVLPC  210 (218)
Q Consensus       147 --------------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~-~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (218)
                                    + .|+|||.+ .++.++.++|||||||++|||++|. +||.......+...+.....++.+...|.
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~APE~l-~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  240 (283)
T d1mqba_         162 DDPEATYTTSGGKIPIRWTAPEAI-SYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPS  240 (283)
T ss_dssp             ------------CCCGGGSCHHHH-HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBH
T ss_pred             CCCccceEeccCCCCccccCHHHH-ccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHH
Confidence                          2 39999955 4556899999999999999999954 55555555555555554444444444443


Q ss_pred             hh
Q 041487          211 FL  212 (218)
Q Consensus       211 ~~  212 (218)
                      .+
T Consensus       241 ~l  242 (283)
T d1mqba_         241 AI  242 (283)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.8e-30  Score=205.38  Aligned_cols=164  Identities=32%  Similarity=0.617  Sum_probs=123.4

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe--------
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT--------  111 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--------  111 (218)
                      .++|++++.||+|+||+||+|+++.+|+.||||++......+...+.+.+|+.++++++|||++++++++..        
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            588999999999999999999999999999999997666666667889999999999999999999999854        


Q ss_pred             CCEEEEEEecCCCChHHHhhhcccC----------------------------Cccccc-----------ccc-------
Q 041487          112 GRYVYLVFEYLDLDLGSFIRKHTIT----------------------------SIRPHI-----------KEV-------  145 (218)
Q Consensus       112 ~~~~~lv~E~~~~~L~~~~~~~~~~----------------------------~~~~~~-----------~~~-------  145 (218)
                      ...+|++||++..++..........                            +++|.+           .++       
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~  168 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS  168 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeecc
Confidence            3468999999986554443322111                            333322           111       


Q ss_pred             --------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhcccC
Q 041487          146 --------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFTALT  203 (218)
Q Consensus       146 --------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~~~~  203 (218)
                                    | ..|+|||++.....++.++||||+||++|+|++|+.||.+.+ ...+..+.+..+.+.
T Consensus       169 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~  242 (318)
T d3blha1         169 LAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  242 (318)
T ss_dssp             C-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             cccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence                          2 239999987777779999999999999999999999998774 344444555555443

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-30  Score=204.54  Aligned_cols=171  Identities=22%  Similarity=0.341  Sum_probs=126.6

Q ss_pred             hhhccceeEEEEeeecCceEEEEEEEccC---CcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           37 KVKDWNYKVVEKIGQGVFGEVYKCLNLET---GKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        37 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      ++..++|++.+.||+|+||.||+|.+..+   +..||+|.++.. ......+.+.+|+.++++++||||+++++++. .+
T Consensus         3 ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~   80 (273)
T d1mp8a_           3 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-EN   80 (273)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT-TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SS
T ss_pred             CcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccc-cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cC
Confidence            45678999999999999999999998654   346888887532 23344578999999999999999999999985 46


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------ccc--------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEV--------  145 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~--------  145 (218)
                      .+++||||+++ +|.+++......                            +++|.+           .+|        
T Consensus        81 ~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~  160 (273)
T d1mp8a_          81 PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  160 (273)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred             eEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccC
Confidence            78999999987 777776543221                            333332           222        


Q ss_pred             ----------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchhh
Q 041487          146 ----------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLPC  210 (218)
Q Consensus       146 ----------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (218)
                                |+ .|+|||.+ .+..++.++|||||||++|||+| |.+||...+...+...+.....++.+...|.
T Consensus       161 ~~~~~~~~~~gt~~y~apE~l-~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (273)
T d1mp8a_         161 STYYKASKGKLPIKWMAPESI-NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPP  236 (273)
T ss_dssp             ----------CCGGGCCHHHH-HHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCH
T ss_pred             CcceeccceecCcccchhhHh-ccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCH
Confidence                      22 38999954 45568999999999999999998 8999998866666665555444444444443

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-30  Score=208.39  Aligned_cols=144  Identities=28%  Similarity=0.413  Sum_probs=115.3

Q ss_pred             hccceeEEE-EeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe----C
Q 041487           39 KDWNYKVVE-KIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT----G  112 (218)
Q Consensus        39 ~~~~~~~~~-~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~----~  112 (218)
                      ..++|.+++ .||+|+||.||+|.++.+++.||||+++.       ...+.+|+.++.++ +||||++++++|.+    +
T Consensus         9 i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GGGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            357899886 59999999999999999999999999863       25678899887655 89999999999875    4


Q ss_pred             CEEEEEEecCCC-ChHHHhhhcccC-----------------------------Cccccc--------------cccCC-
Q 041487          113 RYVYLVFEYLDL-DLGSFIRKHTIT-----------------------------SIRPHI--------------KEVGS-  147 (218)
Q Consensus       113 ~~~~lv~E~~~~-~L~~~~~~~~~~-----------------------------~~~~~~--------------~~~g~-  147 (218)
                      ..+|+|||||++ +|.+++......                             +++|.+              .++|. 
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccccccccccccee
Confidence            679999999987 999999764321                             333332              22222 


Q ss_pred             ----------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcc
Q 041487          148 ----------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKD  190 (218)
Q Consensus       148 ----------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~  190 (218)
                                      .|+|||. ..+..|+.++|||||||++|+|+||+.||.+.+..
T Consensus       162 ~~~~~~~~~~~~~gt~~y~aPE~-~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~  219 (335)
T d2ozaa1         162 KETTSHNSLTTPCYTPYYVAPEV-LGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL  219 (335)
T ss_dssp             EECCCCCCCCCCSCCCSSCCCCC-CCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC
T ss_pred             eeccCCCccccccCCcccCCcHH-HcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHH
Confidence                            2999995 55666899999999999999999999999876433

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.6e-30  Score=203.99  Aligned_cols=162  Identities=41%  Similarity=0.693  Sum_probs=120.0

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccC-CcEEEEEEeecCCCCCCchHHHHHHHHHHhhC---CCCCeeeeeeeEEe----
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLET-GKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL---EHDNIVRLLDVLTT----  111 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~~----  111 (218)
                      .++|++++.||+|+||.||+|++..+ ++.||||+++...........+.+|+.+++.+   +||||++++++|..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46899999999999999999999765 66799999976554444455567788777665   79999999999852    


Q ss_pred             -CCEEEEEEecCCCChHHHhhhcccC-----------------------------Cccccc-----------cc------
Q 041487          112 -GRYVYLVFEYLDLDLGSFIRKHTIT-----------------------------SIRPHI-----------KE------  144 (218)
Q Consensus       112 -~~~~~lv~E~~~~~L~~~~~~~~~~-----------------------------~~~~~~-----------~~------  144 (218)
                       ...++++||++++++..+.......                             |++|.+           .+      
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~  165 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI  165 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCC
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhh
Confidence             3579999999988655443322111                             444433           11      


Q ss_pred             ----------cC-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          145 ----------VG-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       145 ----------~g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                                .| ..|+|||. ..+..|+.++||||+||++|+|++|++||.+. ..+.+..+.+..+.+
T Consensus       166 ~~~~~~~~~~~gT~~Y~APE~-~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~  234 (305)
T d1blxa_         166 YSFQMALTSVVVTLWYRAPEV-LLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLP  234 (305)
T ss_dssp             CCGGGGGCCCCCCCTTCCHHH-HTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             hcccccCCCcccChhhcCcch-hcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCC
Confidence                      22 23999995 45566999999999999999999999999987 445556666655443

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=204.97  Aligned_cols=169  Identities=22%  Similarity=0.375  Sum_probs=123.3

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccCCc----EEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLETGK----KVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +..++|++++.||+|+||.||+|.++.+|+    .||+|.++.. ......+.+.+|+.++++++||||+++++++.++.
T Consensus         6 ~k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~   84 (317)
T d1xkka_           6 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST   84 (317)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             CCHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccc-cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            345679999999999999999999887765    5788877643 33345678999999999999999999999998765


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------ccc--------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEV--------  145 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~--------  145 (218)
                       .++++|++.+ +|.+++......                            +++|.+           .+|        
T Consensus        85 -~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~  163 (317)
T d1xkka_          85 -VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  163 (317)
T ss_dssp             -EEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTT
T ss_pred             -eeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceeccc
Confidence             4556666654 888877654332                            333322           122        


Q ss_pred             ------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHHhcccCcccchh
Q 041487          146 ------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIVRYFTALTNYLVLP  209 (218)
Q Consensus       146 ------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  209 (218)
                                  +..|+|||.+. ++.++.++|||||||++|||+| |++||.+.+...+...+.....++.+...|
T Consensus       164 ~~~~~~~~~~~gt~~y~APE~l~-~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~  239 (317)
T d1xkka_         164 EEKEYHAEGGKVPIKWMALESIL-HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICT  239 (317)
T ss_dssp             TCC--------CCTTTSCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBC
T ss_pred             ccccccccccccCccccChHHHh-cCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccC
Confidence                        23499999654 4568999999999999999999 899999887777777776655444443333

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6e-30  Score=202.36  Aligned_cols=148  Identities=26%  Similarity=0.393  Sum_probs=117.1

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCC----CchHHHHHHHHHHhhCC--CCCeeeeeeeEEeCC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPE----GVPSYLIAGVSLLKELE--HDNIVRLLDVLTTGR  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~~  113 (218)
                      .++|++.+.||+|+||.||+|+++.+++.||||++++.....    ....++.+|+.++++++  ||||+++++++.+.+
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~   82 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD   82 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC
Confidence            467999999999999999999999999999999997643222    22345778999999986  899999999999999


Q ss_pred             EEEEEEecCCC--ChHHHhhhcccC---------------------------Cccccc------------cccC------
Q 041487          114 YVYLVFEYLDL--DLGSFIRKHTIT---------------------------SIRPHI------------KEVG------  146 (218)
Q Consensus       114 ~~~lv~E~~~~--~L~~~~~~~~~~---------------------------~~~~~~------------~~~g------  146 (218)
                      ..++||||+.+  ++.+++......                           |++|.+            .+||      
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~  162 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK  162 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecc
Confidence            99999999975  666776554322                           333332            2222      


Q ss_pred             ---------C-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------S-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               + .|+|||.+.....++.++|||||||++|+|+||+.||...
T Consensus       163 ~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (273)
T d1xwsa_         163 DTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  213 (273)
T ss_dssp             SSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             cccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc
Confidence                     2 3999997665555677899999999999999999999763

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-29  Score=201.38  Aligned_cols=170  Identities=24%  Similarity=0.387  Sum_probs=122.8

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCE
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRY  114 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  114 (218)
                      ..++..++|++.+.||+|+||.||+|.++.+ ..||||+++...   ...+.+.+|+.++++++|||||++++++.+ +.
T Consensus        11 ~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~-~~vAiK~l~~~~---~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~   85 (285)
T d1fmka3          11 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGT---MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP   85 (285)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             ceEcCHHHEEEeeEEeeCCCeEEEEEEECCC-CEEEEEEECccc---CCHHHHHHHHHHHHhcccCCEeEEEEEEec-CC
Confidence            3457788999999999999999999998644 679999986432   234789999999999999999999999854 55


Q ss_pred             EEEEEecCCC-ChHHHhhhccc---C--------------------------Ccccc-----------ccccCC------
Q 041487          115 VYLVFEYLDL-DLGSFIRKHTI---T--------------------------SIRPH-----------IKEVGS------  147 (218)
Q Consensus       115 ~~lv~E~~~~-~L~~~~~~~~~---~--------------------------~~~~~-----------~~~~g~------  147 (218)
                      +++||||+++ +|.+++.....   .                          +++|.           +.++|.      
T Consensus        86 ~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~  165 (285)
T d1fmka3          86 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  165 (285)
T ss_dssp             CEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred             eEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccC
Confidence            7999999997 77777654321   1                          33332           233332      


Q ss_pred             -------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCC-CCCCCCCcchHHHHHHHhcccCcccchhh
Q 041487          148 -------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK-PLFPCGKKDHLSLIVRYFTALTNYLVLPC  210 (218)
Q Consensus       148 -------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~-~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (218)
                                   .|+|||.+. .+.++.++|||||||++|||+||. +|+.......+...+.....++.+...|.
T Consensus       166 ~~~~~~~~~~gt~~y~aPE~~~-~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~  241 (285)
T d1fmka3         166 NEYTARQGAKFPIKWTAPEAAL-YGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPE  241 (285)
T ss_dssp             ----------CCGGGSCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCH
T ss_pred             CCceeeccccccccccChHHHh-CCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCH
Confidence                         299999655 455899999999999999999965 55555554444444443333333333333

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.7e-30  Score=204.80  Aligned_cols=162  Identities=27%  Similarity=0.356  Sum_probs=123.2

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEccCCcE--EEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLETGKK--VAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT  111 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~--vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~  111 (218)
                      .+.++.++|++.+.||+|+||.||+|+++.++..  ||||.++.. ......+.+.+|+.+++++ +||||+++++++..
T Consensus         4 ~~~i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~   82 (309)
T d1fvra_           4 YPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH   82 (309)
T ss_dssp             SSBCCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEE
T ss_pred             CCccCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcc-cChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec
Confidence            4456778999999999999999999999888764  677776533 2334457799999999998 79999999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhccc-------------------------------------------CCccccc-----
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTI-------------------------------------------TSIRPHI-----  142 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~-------------------------------------------~~~~~~~-----  142 (218)
                      .+.+++||||+++ +|.+++.....                                           .++++.+     
T Consensus        83 ~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~  162 (309)
T d1fvra_          83 RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGE  162 (309)
T ss_dssp             TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECG
T ss_pred             CCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcC
Confidence            9999999999997 99999865321                                           0333322     


Q ss_pred             ------cccC-----------------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCC-CCCCCCCcchHHHHHHH
Q 041487          143 ------KEVG-----------------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK-PLFPCGKKDHLSLIVRY  198 (218)
Q Consensus       143 ------~~~g-----------------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~-~Pf~~~~~~~~~~~~~~  198 (218)
                            .++|                 ..|+|||.+. ++.++.++|||||||++|||++|. +||.+.+...+...+..
T Consensus       163 ~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~  241 (309)
T d1fvra_         163 NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLN-YSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ  241 (309)
T ss_dssp             GGCEEECCTTCEESSCEECCC----CCTTTCCHHHHH-HCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGG
T ss_pred             CCceEEccccccccccccccccceecCCcccchHHhc-cCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence                  2222                 3499999665 455899999999999999999965 67887766665555443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=196.11  Aligned_cols=161  Identities=37%  Similarity=0.610  Sum_probs=124.5

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCCEEEEEEe
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGRYVYLVFE  120 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~E  120 (218)
                      ++|++++.||+|+||+||+|+++.+++.||||+++.........+.+.+|+.+++.++||||+++++++......++++|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            68999999999999999999999999999999998766666778899999999999999999999999999999999999


Q ss_pred             cCCC-ChHHHhhhcccC---------------------------Cccccc-----------cccCC--------------
Q 041487          121 YLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEVGS--------------  147 (218)
Q Consensus       121 ~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~g~--------------  147 (218)
                      ++.+ .+..+.......                           |++|.+           .++|.              
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~  161 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAE  161 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSC
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCccceee
Confidence            9987 444444333221                           444433           22222              


Q ss_pred             ----cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-Cc-chHHHHHHHhcc
Q 041487          148 ----PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KK-DHLSLIVRYFTA  201 (218)
Q Consensus       148 ----~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~-~~~~~~~~~~~~  201 (218)
                          .|+|||.+.....++.++||||+||++|+|++|+.||... +. +.+..+....+.
T Consensus       162 ~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~  221 (292)
T d1unla_         162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGT  221 (292)
T ss_dssp             CSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCC
T ss_pred             ccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCC
Confidence                2677775555666899999999999999999999886433 33 334444443333

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-30  Score=204.22  Aligned_cols=157  Identities=25%  Similarity=0.359  Sum_probs=112.1

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEccC-C--cEEEEEEeecCCCC-CCchHHHHHHHHHHhhCCCCCeeeeeeeEEeCC
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNLET-G--KKVAIKMINIQNEP-EGVPSYLIAGVSLLKELEHDNIVRLLDVLTTGR  113 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~-~--~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  113 (218)
                      +..++|++++.||+|+||.||+|+.... +  ..||||++++.... ....+.+.+|+.++++++||||+++++++.+ +
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~   83 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-P   83 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-c
Confidence            4567899999999999999999986533 2  46899998765433 3446789999999999999999999999965 4


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------Cccccc-----------cccCC------
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------SIRPHI-----------KEVGS------  147 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------~~~~~~-----------~~~g~------  147 (218)
                      ..++||||+++ ++.+++..+...                            +++|.+           .++|.      
T Consensus        84 ~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~  163 (273)
T d1u46a_          84 PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  163 (273)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             chheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhccc
Confidence            67899999986 888776554321                            333322           22221      


Q ss_pred             ---------------cccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 041487          148 ---------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDHLSLIV  196 (218)
Q Consensus       148 ---------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~~~~~~  196 (218)
                                     .|+|||.+. +..++.++|||||||++|||+| |+.||.+.+...+...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~aPE~~~-~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i  227 (273)
T d1u46a_         164 NDDHYVMQEHRKVPFAWCAPESLK-TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKI  227 (273)
T ss_dssp             -CCEEEC-----CCGGGCCHHHHH-HCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHH
T ss_pred             CCCcceecCccccCcccCCHHHHh-CCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHH
Confidence                           389999554 5568999999999999999998 89999887555544443

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-29  Score=202.96  Aligned_cols=155  Identities=30%  Similarity=0.566  Sum_probs=119.6

Q ss_pred             ceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------CCEE
Q 041487           42 NYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------GRYV  115 (218)
Q Consensus        42 ~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~~  115 (218)
                      +|+.+++||+|+||+||+|+++.+++.||||++.....      ...+|+.++++++||||++++++|..      ...+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~   94 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL   94 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEE
Confidence            69999999999999999999999999999999975321      23479999999999999999999853      3468


Q ss_pred             EEEEecCCCChHHHhhhc----ccC---------------------------Cccccc------------cccC------
Q 041487          116 YLVFEYLDLDLGSFIRKH----TIT---------------------------SIRPHI------------KEVG------  146 (218)
Q Consensus       116 ~lv~E~~~~~L~~~~~~~----~~~---------------------------~~~~~~------------~~~g------  146 (218)
                      ++|||||++++.+.+...    ...                           |++|.+            .+||      
T Consensus        95 ~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~  174 (350)
T d1q5ka_          95 NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLV  174 (350)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECC
T ss_pred             EEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhcc
Confidence            999999988665554321    110                           333332            2333      


Q ss_pred             -----------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHHhccc
Q 041487          147 -----------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG-KKDHLSLIVRYFTAL  202 (218)
Q Consensus       147 -----------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~-~~~~~~~~~~~~~~~  202 (218)
                                 ..|+|||++.....++.++||||+||++|+|++|+.||... ..+.+..+.+.++.+
T Consensus       175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~  242 (350)
T d1q5ka_         175 RGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTP  242 (350)
T ss_dssp             TTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCC
T ss_pred             CCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence                       23999998777777999999999999999999999999876 445556665554443

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=2.9e-29  Score=201.04  Aligned_cols=166  Identities=28%  Similarity=0.444  Sum_probs=127.1

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      .++-.++|++++.||+|+||.||+|+.+.     ++..||||.++.. ......+.+.+|+.++++++||||+++++++.
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~-~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE-ASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChh-cChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            33445789999999999999999998753     4578999998643 23344678999999999999999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC---------------------------------------------------Cc
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------------------------------SI  138 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------------------------~~  138 (218)
                      .....+++|||+++ +|.+++......                                                   ++
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDl  166 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  166 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEE
Confidence            99999999999986 899888543210                                                   33


Q ss_pred             ccc-----------ccccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCC-CCCCC
Q 041487          139 RPH-----------IKEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGK-PLFPC  186 (218)
Q Consensus       139 ~~~-----------~~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~-~Pf~~  186 (218)
                      ++.           +.+||.                    .|+|||. ..+..++.++|||||||++|||++|. +||..
T Consensus       167 Kp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~-~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~  245 (301)
T d1lufa_         167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPES-IFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG  245 (301)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHH-HHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             cccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHH-HccCCCChhhhhccchhhHHHHHccCCCCCCC
Confidence            322           233332                    3889995 45666999999999999999999985 78888


Q ss_pred             CCcchHHHHHHHhcccC
Q 041487          187 GKKDHLSLIVRYFTALT  203 (218)
Q Consensus       187 ~~~~~~~~~~~~~~~~~  203 (218)
                      .+...+...++....++
T Consensus       246 ~~~~e~~~~v~~~~~~~  262 (301)
T d1lufa_         246 MAHEEVIYYVRDGNILA  262 (301)
T ss_dssp             SCHHHHHHHHHTTCCCC
T ss_pred             CCHHHHHHHHHcCCCCC
Confidence            76666666655444333

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.6e-29  Score=203.63  Aligned_cols=160  Identities=29%  Similarity=0.446  Sum_probs=123.1

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe------CC
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT------GR  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~  113 (218)
                      .++|++++.||+|+||+||+|.++.+|+.||||+++.........+++.+|+.+++.++||||++++++|..      ..
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCc
Confidence            467999999999999999999999999999999998765555556789999999999999999999999963      46


Q ss_pred             EEEEEEecCCCChHHHhhhcccC-------------------------Cccccc-----------ccc------------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT-------------------------SIRPHI-----------KEV------------  145 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~-------------------------~~~~~~-----------~~~------------  145 (218)
                      .+|+|||||.+++.+.+......                         +++|.+           .++            
T Consensus        96 ~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~  175 (355)
T d2b1pa1          96 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM  175 (355)
T ss_dssp             EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----------
T ss_pred             eeEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccccccc
Confidence            89999999988766655432211                         444433           111            


Q ss_pred             -----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHHhc
Q 041487          146 -----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-KDHLSLIVRYFT  200 (218)
Q Consensus       146 -----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-~~~~~~~~~~~~  200 (218)
                           +..|+|||.+ .+..++.++||||+||++|+|++|+.||.+.+ ...+..+.....
T Consensus       176 ~~~~~t~~y~aPE~l-~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~  235 (355)
T d2b1pa1         176 TPYVVTRYYRAPEVI-LGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLG  235 (355)
T ss_dssp             -----CCTTCCHHHH-TTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC
T ss_pred             ccccccccccChhhh-cCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhcc
Confidence                 2349999965 45668999999999999999999999998773 333344444333

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=201.71  Aligned_cols=150  Identities=19%  Similarity=0.336  Sum_probs=119.8

Q ss_pred             hhccceeEEEEeeecCceEEEEEEEc---cCCcEEEEEEeecCCC--CCCchHHHHHHHHHHhhCCC-CCeeeeeeeEEe
Q 041487           38 VKDWNYKVVEKIGQGVFGEVYKCLNL---ETGKKVAIKMINIQNE--PEGVPSYLIAGVSLLKELEH-DNIVRLLDVLTT  111 (218)
Q Consensus        38 ~~~~~~~~~~~ig~G~~g~v~~~~~~---~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~  111 (218)
                      +..++|++++.||+|+||.||+|.+.   .+|+.||+|++++...  .....+.+.+|+.++++++| |||+++++++.+
T Consensus        21 ~~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~  100 (322)
T d1vzoa_          21 VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  100 (322)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             cchhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc
Confidence            45688999999999999999999873   4689999999875432  23446778899999999976 899999999999


Q ss_pred             CCEEEEEEecCCC-ChHHHhhhcccC---------------------------Cccccc-----------ccc-------
Q 041487          112 GRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------SIRPHI-----------KEV-------  145 (218)
Q Consensus       112 ~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------~~~~~~-----------~~~-------  145 (218)
                      ...++++|||+.+ +|.+++......                           +++|.+           .+|       
T Consensus       101 ~~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~  180 (322)
T d1vzoa_         101 ETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFV  180 (322)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECC
T ss_pred             CCceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhc
Confidence            9999999999987 898888765432                           333332           222       


Q ss_pred             ------------CCcccCcccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ------------GSPYKAPESRIRSS-VYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ------------g~~y~aPE~~~~~~-~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                  ...|+|||.+.... .++.++|||||||++|+|++|+.||.+.
T Consensus       181 ~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~  235 (322)
T d1vzoa_         181 ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVD  235 (322)
T ss_dssp             GGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCT
T ss_pred             ccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence                        22399999765543 4788999999999999999999999876

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-28  Score=201.02  Aligned_cols=153  Identities=30%  Similarity=0.559  Sum_probs=120.5

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC------C
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG------R  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~  113 (218)
                      .++|++++.||+|+||+||+|+++.+|+.||||++++........+.+.+|+.++++++|||++++++++...      .
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            5689999999999999999999999999999999986554445567889999999999999999999998632      2


Q ss_pred             EEEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------cccCC---------
Q 041487          114 YVYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEVGS---------  147 (218)
Q Consensus       114 ~~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~g~---------  147 (218)
                      ..+++++++.++|.+++......                          +++|.+           .++|.         
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~  176 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT  176 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTGGGS
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCcccc
Confidence            35555555555999988654432                          444443           12221         


Q ss_pred             ------cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCcchH
Q 041487          148 ------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGKKDHL  192 (218)
Q Consensus       148 ------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~~~~~  192 (218)
                            .|+|||.......++.++|||||||++|+|++|+.||.+.+....
T Consensus       177 ~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~  227 (348)
T d2gfsa1         177 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ  227 (348)
T ss_dssp             SSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             cccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHH
Confidence                  299999877777789999999999999999999999988744333

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-28  Score=197.06  Aligned_cols=178  Identities=23%  Similarity=0.329  Sum_probs=131.4

Q ss_pred             hhhhhhhccceeEEEEeeecCceEEEEEEEc-----cCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeee
Q 041487           33 EQMEKVKDWNYKVVEKIGQGVFGEVYKCLNL-----ETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLL  106 (218)
Q Consensus        33 ~~~~~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~  106 (218)
                      ....++..++|++.+.||+|+||.||+|+.+     .++..||||.++... .......+.+|+.+++++ +||||++++
T Consensus        15 ~~~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~E~~~~~~l~~HpnIv~~~   93 (311)
T d1t46a_          15 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHMNIVNLL   93 (311)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc-CHHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            3455677899999999999999999999864     356789999997543 233456788999999999 799999999


Q ss_pred             eeEEeCCEEEEEEecCCC-ChHHHhhhcccC---------------------------------------------Cccc
Q 041487          107 DVLTTGRYVYLVFEYLDL-DLGSFIRKHTIT---------------------------------------------SIRP  140 (218)
Q Consensus       107 ~~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~---------------------------------------------~~~~  140 (218)
                      +++.....++++||||++ +|.+++......                                             +++|
T Consensus        94 g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp  173 (311)
T d1t46a_          94 GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAA  173 (311)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccc
Confidence            999999999999999987 888888654311                                             3333


Q ss_pred             cc-----------ccc--------------------CCcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCC
Q 041487          141 HI-----------KEV--------------------GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGK  188 (218)
Q Consensus       141 ~~-----------~~~--------------------g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~  188 (218)
                      .+           .++                    +..|+|||.+ .+..++.++|||||||++|||+| |.+||....
T Consensus       174 ~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~  252 (311)
T d1t46a_         174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI-FNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP  252 (311)
T ss_dssp             GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHh-cCCCCCCcccccchHHHHHHHHhCCCCCCCCCC
Confidence            22           111                    1239999955 45568999999999999999999 667776663


Q ss_pred             -cchHHHHHHHhcccCcccchhhhh
Q 041487          189 -KDHLSLIVRYFTALTNYLVLPCFL  212 (218)
Q Consensus       189 -~~~~~~~~~~~~~~~~~~~~~~~~  212 (218)
                       .+.+..+++....+..+..+|..+
T Consensus       253 ~~~~~~~~i~~~~~~~~~~~~~~~l  277 (311)
T d1t46a_         253 VDSKFYKMIKEGFRMLSPEHAPAEM  277 (311)
T ss_dssp             SSHHHHHHHHHTCCCCCCTTSCHHH
T ss_pred             HHHHHHHHHhcCCCCCCcccccHHH
Confidence             345566666544444433343333

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.1e-29  Score=199.32  Aligned_cols=173  Identities=24%  Similarity=0.362  Sum_probs=129.8

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEE
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLT  110 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  110 (218)
                      .++..++|++.+.||+|+||.||+|.++.     .+..||||.++.. ........+.+|+.++++++||||+++++++.
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~-~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~   93 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA-ASMRERIEFLNEASVMKEFNCHHVVRLLGVVS   93 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT-SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred             eeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcc-cChHHHHHHHHHHHHHHHcCCCCEeeeeeEEe
Confidence            45778999999999999999999998753     3578999998643 23334567899999999999999999999999


Q ss_pred             eCCEEEEEEecCCC-ChHHHhhhcccC-------------------------------------Cccc-----------c
Q 041487          111 TGRYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------SIRP-----------H  141 (218)
Q Consensus       111 ~~~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------~~~~-----------~  141 (218)
                      .....++||||+++ +|.+++......                                     ++++           +
T Consensus        94 ~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          94 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEE
T ss_pred             cCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEE
Confidence            99999999999986 888887543210                                     2222           2


Q ss_pred             ccccCC--------------------cccCcccccCCCCCCCcchHHHHHHHHHHHHhC-CCCCCCCCcchHHHHHHHhc
Q 041487          142 IKEVGS--------------------PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG-KPLFPCGKKDHLSLIVRYFT  200 (218)
Q Consensus       142 ~~~~g~--------------------~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg-~~Pf~~~~~~~~~~~~~~~~  200 (218)
                      +.++|.                    .|+|||.+. +..++.++|||||||++|||+|| ++||.+.+...+...+....
T Consensus       174 l~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~-~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~  252 (308)
T d1p4oa_         174 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK-DGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGG  252 (308)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTC
T ss_pred             EeecccceeccCCcceeeccceecccccCCHHHHc-cCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCC
Confidence            233333                    299999654 55588999999999999999997 58898876666555554434


Q ss_pred             ccCcccchhh
Q 041487          201 ALTNYLVLPC  210 (218)
Q Consensus       201 ~~~~~~~~~~  210 (218)
                      .++.+...|.
T Consensus       253 ~~~~p~~~~~  262 (308)
T d1p4oa_         253 LLDKPDNCPD  262 (308)
T ss_dssp             CCCCCTTCCH
T ss_pred             CCCCcccchH
Confidence            3433333333

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-28  Score=196.69  Aligned_cols=175  Identities=22%  Similarity=0.357  Sum_probs=127.4

Q ss_pred             hhhhccceeEEEEeeecCceEEEEEEEccCC-------cEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeee
Q 041487           36 EKVKDWNYKVVEKIGQGVFGEVYKCLNLETG-------KKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLD  107 (218)
Q Consensus        36 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~-------~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~  107 (218)
                      ..+..++|++++.||+|+||.||+|++..++       ..||||.+++.. .......+.+|...+.++ +||||+++++
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~e~~~l~~~~~HpnIv~~~~   86 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA-TEKDLSDLISEMEMMKMIGKHKNIINLLG   86 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECccc-ChHHHHHHHHHHHHHHHhcCCCeEEeccc
Confidence            4467889999999999999999999876543       479999987533 333456788888888888 8999999999


Q ss_pred             eEEeCCEEEEEEecCCC-ChHHHhhhcccC-------------------------------------------Cccccc-
Q 041487          108 VLTTGRYVYLVFEYLDL-DLGSFIRKHTIT-------------------------------------------SIRPHI-  142 (218)
Q Consensus       108 ~~~~~~~~~lv~E~~~~-~L~~~~~~~~~~-------------------------------------------~~~~~~-  142 (218)
                      ++.+++.+++||||+++ +|.+++......                                           +++|.+ 
T Consensus        87 ~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~Ni  166 (299)
T d1fgka_          87 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  166 (299)
T ss_dssp             EECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccce
Confidence            99999999999999987 999998654310                                           333332 


Q ss_pred             ----------ccc-------------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCcch
Q 041487          143 ----------KEV-------------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVS-GKPLFPCGKKDH  191 (218)
Q Consensus       143 ----------~~~-------------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~t-g~~Pf~~~~~~~  191 (218)
                                .++                   | ..|+|||.+. ++.|+.++|||||||++|||++ |.+||.+.+...
T Consensus       167 Ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~-~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~  245 (299)
T d1fgka_         167 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF-DRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE  245 (299)
T ss_dssp             EECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             eecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhc-CCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHH
Confidence                      111                   2 2399999654 4569999999999999999998 799999887777


Q ss_pred             HHHHHHHhcccCcccchhhhh
Q 041487          192 LSLIVRYFTALTNYLVLPCFL  212 (218)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~  212 (218)
                      +...+.....++.+...|..+
T Consensus       246 ~~~~i~~~~~~~~p~~~~~~l  266 (299)
T d1fgka_         246 LFKLLKEGHRMDKPSNCTNEL  266 (299)
T ss_dssp             HHHHHHTTCCCCCCSSCCHHH
T ss_pred             HHHHHHcCCCCCCCccchHHH
Confidence            777766554444444443333

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.95  E-value=1.6e-27  Score=190.09  Aligned_cols=145  Identities=23%  Similarity=0.291  Sum_probs=117.4

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCC-CCeeeeeeeEEeCCEEEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEH-DNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~l  117 (218)
                      ..++|++.+.||+|+||.||+|++..+++.||+|+++....    ...+.+|+++++.+.| +|++.+++++......++
T Consensus         3 ig~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~   78 (293)
T d1csna_           3 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   78 (293)
T ss_dssp             ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             CCCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC----cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEE
Confidence            35789999999999999999999999999999999864322    2346788888999965 899999999999999999


Q ss_pred             EEecCCCChHHHhhhcccC----------------------------Cccccc----------------ccc--------
Q 041487          118 VFEYLDLDLGSFIRKHTIT----------------------------SIRPHI----------------KEV--------  145 (218)
Q Consensus       118 v~E~~~~~L~~~~~~~~~~----------------------------~~~~~~----------------~~~--------  145 (218)
                      ||||++++|.+++......                            |++|.+                .+|        
T Consensus        79 vme~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~  158 (293)
T d1csna_          79 VIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  158 (293)
T ss_dssp             EEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             EEEecCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEccc
Confidence            9999988998887654322                            333332                111        


Q ss_pred             ----------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 ----------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 ----------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                                      | ..|+|||. ..+..++.++|||||||++|+|+||+.||.+..
T Consensus       159 ~~~~~~~~~~~~~~~~GT~~y~aPE~-~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~  217 (293)
T d1csna_         159 PVTKQHIPYREKKNLSGTARYMSINT-HLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  217 (293)
T ss_dssp             TTTCCBCCCCCCCCCCSCTTTCCHHH-HTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             CccccceeecccCceEEchhhcCHHH-hcCCCCChHHHHHHhhHHHHHHHhCCCcCCCcc
Confidence                            2 23999995 455668999999999999999999999998663

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.6e-28  Score=196.14  Aligned_cols=148  Identities=28%  Similarity=0.541  Sum_probs=116.3

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEeC-----CE
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTTG-----RY  114 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~  114 (218)
                      .++|++++.||+|+||+||+|.++.+++.||||++++.. .....+.+.+|+.++++++|||++++++++...     ..
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE-HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD   85 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT-CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc-ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence            357999999999999999999999999999999987432 233456788999999999999999999998654     34


Q ss_pred             EEEEEecCCCChHHHhhhcccC--------------------------Cccccc-----------ccc------------
Q 041487          115 VYLVFEYLDLDLGSFIRKHTIT--------------------------SIRPHI-----------KEV------------  145 (218)
Q Consensus       115 ~~lv~E~~~~~L~~~~~~~~~~--------------------------~~~~~~-----------~~~------------  145 (218)
                      .+++++++.++|.+++......                          |++|.+           .++            
T Consensus        86 ~~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~  165 (345)
T d1pmea_          86 VYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH  165 (345)
T ss_dssp             EEEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCB
T ss_pred             EEEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCcc
Confidence            6777777766999998765443                          444433           122            


Q ss_pred             --------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC
Q 041487          146 --------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK  188 (218)
Q Consensus       146 --------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~  188 (218)
                              |+ .|+|||.+.....++.++||||+||++|+|++|+.||.+.+
T Consensus       166 ~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~  217 (345)
T d1pmea_         166 TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH  217 (345)
T ss_dssp             CCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCC
Confidence                    22 39999977677778999999999999999999999998763

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=190.70  Aligned_cols=142  Identities=26%  Similarity=0.406  Sum_probs=106.8

Q ss_pred             eEEEEeeecCceEEEEEEEccCC---cEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCCeeeeeeeEEe-CCEEEEEE
Q 041487           44 KVVEKIGQGVFGEVYKCLNLETG---KKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDNIVRLLDVLTT-GRYVYLVF  119 (218)
Q Consensus        44 ~~~~~ig~G~~g~v~~~~~~~~~---~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~  119 (218)
                      ++.++||+|+||+||+|++..++   ..||||.++.. ......+.+.+|+.++++++||||+++++++.. ++..++||
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCC-CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcc-cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEE
Confidence            34678999999999999986543   36899998642 233446789999999999999999999999765 56899999


Q ss_pred             ecCCC-ChHHHhhhcccC----------------------------Ccccc-----------ccccC-------------
Q 041487          120 EYLDL-DLGSFIRKHTIT----------------------------SIRPH-----------IKEVG-------------  146 (218)
Q Consensus       120 E~~~~-~L~~~~~~~~~~----------------------------~~~~~-----------~~~~g-------------  146 (218)
                      |||++ +|.+++......                            ++++.           +.+||             
T Consensus       109 E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~  188 (311)
T d1r0pa_         109 PYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  188 (311)
T ss_dssp             ECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred             EEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence            99997 887777644322                            22222           12222             


Q ss_pred             ---------CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          147 ---------SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       147 ---------~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                               ..|+|||.+.. ..++.++||||||+++|||+||+.||...
T Consensus       189 ~~~~~~~gt~~y~aPE~~~~-~~~~~ksDI~SfGivl~El~t~~~p~~~~  237 (311)
T d1r0pa_         189 HNKTGAKLPVKWMALESLQT-QKFTTKSDVWSFGVLLWELMTRGAPPYPD  237 (311)
T ss_dssp             TCTTCSSCCGGGSCHHHHHH-CCCCHHHHHHHHHHHHHHHHTTSCCSCC-
T ss_pred             eecccccccccccChHHHhc-CCCCChhHhhhhHHHHHHHHHCCCCCCCC
Confidence                     23999996554 45899999999999999999977777544

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.94  E-value=4.2e-27  Score=190.38  Aligned_cols=144  Identities=27%  Similarity=0.524  Sum_probs=115.0

Q ss_pred             hccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEe--CCEE
Q 041487           39 KDWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTT--GRYV  115 (218)
Q Consensus        39 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~--~~~~  115 (218)
                      ..++|++++.||+|+||+||+|+++.+++.||+|+++..     ..+.+.+|+.+++.+ .||||++++++|..  ...+
T Consensus        33 ~~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-----~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          33 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             CCcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH-----HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            456899999999999999999999999999999998632     356789999999999 49999999999974  4569


Q ss_pred             EEEEecCCC-ChHHHhhhcccC------------------------Cccccc------------ccc-------------
Q 041487          116 YLVFEYLDL-DLGSFIRKHTIT------------------------SIRPHI------------KEV-------------  145 (218)
Q Consensus       116 ~lv~E~~~~-~L~~~~~~~~~~------------------------~~~~~~------------~~~-------------  145 (218)
                      ++|||||++ +|.++.......                        +++|.+            .++             
T Consensus       108 ~~v~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~  187 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYN  187 (328)
T ss_dssp             EEEEECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCC
T ss_pred             eEEEeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCCccc
Confidence            999999987 565543321111                        344432            122             


Q ss_pred             ----CCcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ----GSPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ----g~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                          +..|+|||.+.....++.++||||+||++|++++|+.||...
T Consensus       188 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~  233 (328)
T d3bqca1         188 VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  233 (328)
T ss_dssp             SCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCC
Confidence                223999997777777899999999999999999999999765

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1e-26  Score=185.83  Aligned_cols=142  Identities=20%  Similarity=0.306  Sum_probs=111.8

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCCCCC-eeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELEHDN-IVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~  119 (218)
                      ++|++.+.||+|+||.||+|+++.+++.||||++.....    .+.+.+|+++++.++|++ |+.+.+++......++||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivm   82 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT----SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc----CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEE
Confidence            569999999999999999999999999999999875322    234788999999997766 555566678889999999


Q ss_pred             ecCCCChHHHhhhcccC----------------------------Cccccc--------------ccc------------
Q 041487          120 EYLDLDLGSFIRKHTIT----------------------------SIRPHI--------------KEV------------  145 (218)
Q Consensus       120 E~~~~~L~~~~~~~~~~----------------------------~~~~~~--------------~~~------------  145 (218)
                      ||+++++.+.+......                            |++|.+              .+|            
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (299)
T d1ckia_          83 ELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  162 (299)
T ss_dssp             ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTC
T ss_pred             EEcCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccc
Confidence            99988887766543221                            344432              122            


Q ss_pred             ------------C-CcccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 041487          146 ------------G-SPYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCG  187 (218)
Q Consensus       146 ------------g-~~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~  187 (218)
                                  | ..|+|||. ..+..++.++|||||||++|||+||+.||...
T Consensus       163 ~~~~~~~~~~~~gt~~y~aPE~-~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~  216 (299)
T d1ckia_         163 QHIPYRENKNLTGTARYASINT-HLGIEQSRRDDLESLGYVLMYFNLGSLPWQGL  216 (299)
T ss_dssp             CBCCCCBCCSCCCCSSSCCHHH-HTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             cceeccccCCcCCCccccCHHH-HhCCCCCChhhEEecCHHHHHHHhCCCccccc
Confidence                        2 23999994 55666899999999999999999999999875

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.5e-27  Score=186.59  Aligned_cols=167  Identities=22%  Similarity=0.375  Sum_probs=119.0

Q ss_pred             hhhhhccceeEEEEeeecCceEEEEEEEcc-----CCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeee
Q 041487           35 MEKVKDWNYKVVEKIGQGVFGEVYKCLNLE-----TGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDV  108 (218)
Q Consensus        35 ~~~~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~  108 (218)
                      ..++..++|++.+.||+|+||.||+|++..     +++.||+|.++... .....+.+.+|..++.++ .|+||+.++++
T Consensus         7 ~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~   85 (299)
T d1ywna1           7 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNLLGA   85 (299)
T ss_dssp             HHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC-----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEcccc-CcHHHHHHHHHHHHHHhhcCCCeEEEeeee
Confidence            344667899999999999999999999764     34689999986432 233356677788777777 68899999998


Q ss_pred             EEe-CCEEEEEEecCCC-ChHHHhhhccc-------------------------------------------CCccccc-
Q 041487          109 LTT-GRYVYLVFEYLDL-DLGSFIRKHTI-------------------------------------------TSIRPHI-  142 (218)
Q Consensus       109 ~~~-~~~~~lv~E~~~~-~L~~~~~~~~~-------------------------------------------~~~~~~~-  142 (218)
                      +.. ...+++|||||++ +|.+++.....                                           .|++|.+ 
T Consensus        86 ~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NI  165 (299)
T d1ywna1          86 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNI  165 (299)
T ss_dssp             ECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGE
T ss_pred             eccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccce
Confidence            764 5579999999986 99999864321                                           0333332 


Q ss_pred             ----------ccc-------------------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhC-CCCCCCCC-cc
Q 041487          143 ----------KEV-------------------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSG-KPLFPCGK-KD  190 (218)
Q Consensus       143 ----------~~~-------------------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg-~~Pf~~~~-~~  190 (218)
                                .+|                   |+ .|+|||.+. +..++.++|||||||++|||+|| .+||...+ .+
T Consensus       166 Ll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~-~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~  244 (299)
T d1ywna1         166 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE  244 (299)
T ss_dssp             EECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH
T ss_pred             eECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhh-cCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHH
Confidence                      222                   22 399999654 55689999999999999999996 57888763 34


Q ss_pred             hHHHHHHHhcccC
Q 041487          191 HLSLIVRYFTALT  203 (218)
Q Consensus       191 ~~~~~~~~~~~~~  203 (218)
                      .+...+.....++
T Consensus       245 ~~~~~~~~~~~~~  257 (299)
T d1ywna1         245 EFCRRLKEGTRMR  257 (299)
T ss_dssp             HHHHHHHHTCCCC
T ss_pred             HHHHHHhcCCCCC
Confidence            4444444433333

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-26  Score=184.98  Aligned_cols=140  Identities=24%  Similarity=0.381  Sum_probs=104.6

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHH--HHHHHhhCCCCCeeeeeeeEEeCC----
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIA--GVSLLKELEHDNIVRLLDVLTTGR----  113 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~--e~~~l~~l~h~~iv~~~~~~~~~~----  113 (218)
                      +.+|.+.+.||+|+||.||+|+.  +|+.||||.++..     ..+.+.+  |+..+..++||||+++++++...+    
T Consensus         2 ~~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~-----~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~   74 (303)
T d1vjya_           2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSE
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECcc-----chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcce
Confidence            46789999999999999999986  7899999998632     1233444  444556789999999999987543    


Q ss_pred             EEEEEEecCCC-ChHHHhhhcccC----------------------------------Ccccc-----------ccccC-
Q 041487          114 YVYLVFEYLDL-DLGSFIRKHTIT----------------------------------SIRPH-----------IKEVG-  146 (218)
Q Consensus       114 ~~~lv~E~~~~-~L~~~~~~~~~~----------------------------------~~~~~-----------~~~~g-  146 (218)
                      .+++|||||++ +|.+++.+....                                  +++|.           +.+|| 
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl  154 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCc
Confidence            68999999987 999998764432                                  22222           22333 


Q ss_pred             ---------------------CcccCcccccCCC-----CCCCcchHHHHHHHHHHHHhCCCCCCC
Q 041487          147 ---------------------SPYKAPESRIRSS-----VYSTPHDVWAVGCIFAEMVSGKPLFPC  186 (218)
Q Consensus       147 ---------------------~~y~aPE~~~~~~-----~~~~~~DiwSlG~~l~~l~tg~~Pf~~  186 (218)
                                           ..|+|||.+....     .++.++|||||||++|||+||..||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~  220 (303)
T d1vjya_         155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI  220 (303)
T ss_dssp             CEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTB
T ss_pred             cccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCc
Confidence                                 2399999654432     256689999999999999999988743

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.1e-22  Score=161.51  Aligned_cols=159  Identities=25%  Similarity=0.490  Sum_probs=107.8

Q ss_pred             ccceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC-----------CCCeeeeeee
Q 041487           40 DWNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE-----------HDNIVRLLDV  108 (218)
Q Consensus        40 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~~iv~~~~~  108 (218)
                      .++|+++++||+|+||+||+|+++.+|+.||||++++.   ....+.+.+|+.+++.+.           |+||++++++
T Consensus        12 ~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~---~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~   88 (362)
T d1q8ya_          12 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   88 (362)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             CCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc---ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence            45699999999999999999999999999999998643   223456778888887764           5789999998


Q ss_pred             EE--eCCEEEEEEecCCC--ChHH---------------------------Hhhh-ccc--CCccccc------------
Q 041487          109 LT--TGRYVYLVFEYLDL--DLGS---------------------------FIRK-HTI--TSIRPHI------------  142 (218)
Q Consensus       109 ~~--~~~~~~lv~E~~~~--~L~~---------------------------~~~~-~~~--~~~~~~~------------  142 (218)
                      +.  .....+++++++..  ....                           ++.. .+.  .|++|.+            
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~  168 (362)
T d1q8ya_          89 FNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENL  168 (362)
T ss_dssp             EEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTE
T ss_pred             eeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccccc
Confidence            85  34566666666532  1111                           1111 101  1334432            


Q ss_pred             -----ccc--------------CC-cccCcccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC-------cchHHHH
Q 041487          143 -----KEV--------------GS-PYKAPESRIRSSVYSTPHDVWAVGCIFAEMVSGKPLFPCGK-------KDHLSLI  195 (218)
Q Consensus       143 -----~~~--------------g~-~y~aPE~~~~~~~~~~~~DiwSlG~~l~~l~tg~~Pf~~~~-------~~~~~~~  195 (218)
                           .++              |+ .|+|||.+. ...++.++||||+||++++|++|+.||...+       .+.+...
T Consensus       169 ~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~  247 (362)
T d1q8ya_         169 IQIKIADLGNACWYDEHYTNSIQTREYRSPEVLL-GAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQI  247 (362)
T ss_dssp             EEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHH-TCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHH
T ss_pred             ceeeEeecccccccccccccccccccccChhhcc-ccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHH
Confidence                 112              22 399999655 5558999999999999999999999997552       2344555


Q ss_pred             HHHhccc
Q 041487          196 VRYFTAL  202 (218)
Q Consensus       196 ~~~~~~~  202 (218)
                      +..++.+
T Consensus       248 ~~~lg~~  254 (362)
T d1q8ya_         248 IELLGEL  254 (362)
T ss_dssp             HHHHCSC
T ss_pred             HHHhCCC
Confidence            5555543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.03  E-value=2.7e-10  Score=83.64  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             eeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCC----C------------CchHHHHHHHHHHhhCCCCCeeeee
Q 041487           43 YKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEP----E------------GVPSYLIAGVSLLKELEHDNIVRLL  106 (218)
Q Consensus        43 ~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~----~------------~~~~~~~~e~~~l~~l~h~~iv~~~  106 (218)
                      +.+.+.||+|+||.||+|.+ .+|+.||||+++.....    .            .......+|...+.++.|++++..+
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~-~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~   80 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVY   80 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred             chhCCEeeeCcceEEEEEEC-CCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEE
Confidence            45789999999999999987 47899999987643211    0            0122344677888999999998887


Q ss_pred             eeEEeCCEEEEEEecCCC
Q 041487          107 DVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus       107 ~~~~~~~~~~lv~E~~~~  124 (218)
                      +..  .  .+++|||+++
T Consensus        81 ~~~--~--~~lvme~~~~   94 (191)
T d1zara2          81 AWE--G--NAVLMELIDA   94 (191)
T ss_dssp             EEE--T--TEEEEECCCC
T ss_pred             Eec--C--CEEEEEeecc
Confidence            653  2  2699999975

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.43  E-value=0.035  Score=40.73  Aligned_cols=83  Identities=14%  Similarity=0.142  Sum_probs=59.2

Q ss_pred             cceeEEEEeeecCceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhC-CCCCeeeeeeeEEeCCEEEEEE
Q 041487           41 WNYKVVEKIGQGVFGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKEL-EHDNIVRLLDVLTTGRYVYLVF  119 (218)
Q Consensus        41 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~  119 (218)
                      ..|++.+..+.++.+.||+...  .+..+++|......  ......+.+|...+..+ .+--+.+++.+....+..++||
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~~--~~~~~vlk~~~~~~--~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~   89 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRY--KGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM   89 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEEC--SSCEEEEEEECGGG--TTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             hceEEEEcCCCCCCCcEEEEEe--CCCeEEEEEcCCCc--ccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEE
Confidence            5677777766666678998763  67778888875432  22233567788887776 3444678888888889999999


Q ss_pred             ecCCC-ChH
Q 041487          120 EYLDL-DLG  127 (218)
Q Consensus       120 E~~~~-~L~  127 (218)
                      +++++ .+.
T Consensus        90 ~~l~G~~~~   98 (263)
T d1j7la_          90 SEADGVLCS   98 (263)
T ss_dssp             ECCSSEEHH
T ss_pred             Eeccccccc
Confidence            99987 543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=93.19  E-value=0.13  Score=40.43  Aligned_cols=77  Identities=19%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             EEEeeecCceEEEEEEEccCCcEEEEEEeecCC-----CCCCchHHHHHHHHHHhhC-CC--CCeeeeeeeEEeCCEEEE
Q 041487           46 VEKIGQGVFGEVYKCLNLETGKKVAIKMINIQN-----EPEGVPSYLIAGVSLLKEL-EH--DNIVRLLDVLTTGRYVYL  117 (218)
Q Consensus        46 ~~~ig~G~~g~v~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~~~e~~~l~~l-~h--~~iv~~~~~~~~~~~~~l  117 (218)
                      .+.||.|....||++.....+..+++|......     ......++...|..+++.+ .+  ..+++++.+  +....++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            567899999999999877778899999865321     1122345677788887766 33  345666544  3444578


Q ss_pred             EEecCCC
Q 041487          118 VFEYLDL  124 (218)
Q Consensus       118 v~E~~~~  124 (218)
                      +||++++
T Consensus       109 vmE~L~~  115 (392)
T d2pula1         109 VMEDLSH  115 (392)
T ss_dssp             EECCCTT
T ss_pred             EEeccCC
Confidence            9999865

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=92.80  E-value=0.34  Score=34.84  Aligned_cols=71  Identities=15%  Similarity=0.049  Sum_probs=48.6

Q ss_pred             EeeecC-ceEEEEEEEccCCcEEEEEEeecCCCCCCchHHHHHHHHHHhhCC--CCCeeeeeeeEEeCCEEEEEEecCCC
Q 041487           48 KIGQGV-FGEVYKCLNLETGKKVAIKMINIQNEPEGVPSYLIAGVSLLKELE--HDNIVRLLDVLTTGRYVYLVFEYLDL  124 (218)
Q Consensus        48 ~ig~G~-~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~~~~~lv~E~~~~  124 (218)
                      .+..|. .+.||+... ..+..+++|..+...     ...+..|...++.+.  .-.+++++......+..++||+++++
T Consensus        17 ~~~~G~s~~~v~r~~~-~~~~~~vlK~~~~~~-----~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G   90 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSA-QGRPVLFVKTDLSGA-----LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPG   90 (255)
T ss_dssp             ECSCTTSSCEEEEEEC-TTSCCEEEEEECSCT-----TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSS
T ss_pred             EcCCcccCCeEEEEEe-CCCCEEEEEeCCccC-----HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeec
Confidence            344444 467888864 456678889865432     223677888777763  23367778877888889999999976