Citrus Sinensis ID: 041499

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--

LLFCYTTFMHCTGKDVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYPSQEQTQDSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEPKLADRYSPITVAPHSIVFATLRDFKAPACA

cEEEcccccccccEEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccEEEEEcccccccccccccccccccccccEEEccccHHHHHHHHHccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHccccEEEEEccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEccccccccccEEEEccEEEEccccccccccccEEccccccEEEccccEEEEEEccccccccc

cEEEHHHHHHHccccEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEcccccccHHHHHHHHHccccEEEEccccccEEEEEcccccccccccccccHHccccccccccHHHHHHHHHHHHHcccEEEEEEHHHccccccccccccccccccHHHHHHHHHHHHHccccEcEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccEEEEEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccHHHHHHHHHHHccccEEEEEcccccEEEEEEEEccccccEEEEEEEEccccEEEEEEEccccccHHHcccccccccccEEEEEEccccccccccEEEEccEEEEEccccccccccccEccccccEEEcccEEEEEEEccccccccc

llfcyttfmhctgkdvKVTVQGVTSiantddnfvcatidwwpinkcdynqcpwgksgvlnLDLKNKILSNAIKAFqplrirvggslqDQVLYKVgnsakkcphfklrkdglfgfskgclsmnrWDEINDLFNQTGAMMTFGLNAligrkksktddtlwegdwnaqNARDLMKYTISkgykiesyELGNELCASGVSAKVSAEQYAKDIVALKNLVRemypdattqpkvlgpagffdkQWFNTFLEKSGQDVVDGLTHHIynlgpgndpelinriqdpyyLDQIAQTYKDISETVkefgpwsgawvgeaggafnsggkyvshtfadgfwfldqlgmtstfnHKVFCRQALiggnyallntttfipnpdyygSLLWHRLMgknvlattqnaspylrvyshcskekpgITVLLINlsnstsfdvsvindmnlypsqeqtqdsqgekpreeyhltpeggniqSDVVllngtplkltnsldipsmepkladryspitvaphsIVFAtlrdfkapaca

LLFCYTTfmhctgkdvkVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGnsakkcphfklrkdGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKksktddtlwegdwnaqnardLMKYTISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYPSQEQTQDSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEPKLADRYSPITVAPHSIVFATLRDFKAPACA

*LFCYTTFMHCTGKDVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNL*****************************SDVVLLNGTPLKLTNSLDI******LADRYSPITVAPHSIVFATLRDF******

LLFCYT*FMHCTGKDVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYPS*******QGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEPKLADRYSPITVAPHSIVFATLRDFKAPACA

LLFCYTTFMHCTGKDVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYPS**************EYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEPKLADRYSPITVAPHSIVFATLRDFKAPACA

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		512	2.2.26 [Sep-21-2011]
Q8L608		539	Heparanase-like protein 2	yes	no	0.962	0.914	0.528	1e-165
Q9FF10		543	Heparanase-like protein 1	no	no	0.996	0.939	0.517	1e-164
Q9FZP1		536	Heparanase-like protein 3	no	no	0.994	0.949	0.451	1e-139
Q9LRC8		527	Baicalin-beta-D-glucuroni	N/A	no	0.951	0.924	0.405	1e-109
Q9Y251		543	Heparanase OS=Homo sapien	yes	no	0.720	0.679	0.313	1e-32
Q71RP1		536	Heparanase OS=Rattus norv	yes	no	0.664	0.634	0.323	3e-32
Q6YGZ1		535	Heparanase OS=Mus musculu	yes	no	0.714	0.684	0.310	9e-32
Q9MYY0		545	Heparanase OS=Bos taurus	yes	no	0.761	0.715	0.279	5e-31
Q90YK5		523	Heparanase OS=Gallus gall	yes	no	0.695	0.680	0.301	1e-29
B2RY83		592	Inactive heparanase-2 OS=	no	no	0.716	0.619	0.254	3e-19

>sp\|Q8L608\|HPSE2_ARATH Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1	Back alignment and function desciption

 Score =  583 bits (1502), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 271/513 (52%), Positives = 359/513 (69%), Gaps = 20/513 (3%)

Query: 18  VTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQP 77
           + + G   IA TD+NF+CAT+DWWP  KC+Y+QCPWG + ++NL+L + +L+ AI+AF+ 
Sbjct: 29  LVIDGSRRIAETDENFICATLDWWPPEKCNYDQCPWGYASLINLNLASPLLAKAIQAFRT 88

Query: 78  LRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAM 137
           LRIR+GGSLQDQV+Y VG+    C  FK   DGLFGFS+GCL M RWDE+N  FN TGA+
Sbjct: 89  LRIRIGGSLQDQVIYDVGDLKTPCTQFKKTDDGLFGFSEGCLYMKRWDEVNHFFNATGAI 148

Query: 138 MTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSA 197
           +TFGLNAL GR  +K + T W GDW+  N +D M YT+SKGY I+S+E GNEL  SG+ A
Sbjct: 149 VTFGLNALHGR--NKLNGTAWGGDWDHTNTQDFMNYTVSKGYAIDSWEFGNELSGSGIWA 206

Query: 198 KVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTH 257
            VS E Y KD++ LKN+++ +Y ++ T+P V+ P GFF++QW++  L  SG  V+D LTH
Sbjct: 207 SVSVELYGKDLIVLKNVIKNVYKNSRTKPLVVAPGGFFEEQWYSELLRLSGPGVLDVLTH 266

Query: 258 HIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGK 317
           HIYNLGPGNDP+L+N+I DP YL  I++ + ++++T++E GPW+ AWVGEAGGAFNSGG+
Sbjct: 267 HIYNLGPGNDPKLVNKILDPNYLSGISELFANVNQTIQEHGPWAAAWVGEAGGAFNSGGR 326

Query: 318 YVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRL 377
            VS TF + FW+LDQLG++S  N KV+CRQAL+GG Y LL   TF+PNPDYY +LLWHRL
Sbjct: 327 QVSETFINSFWYLDQLGISSKHNTKVYCRQALVGGFYGLLEKETFVPNPDYYSALLWHRL 386

Query: 378 MGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYPSQEQTQ 437
           MGK +L     AS YLR Y HCSK + GIT+LLINLS  T+F V+V N + +    E  +
Sbjct: 387 MGKGILGVQTTASEYLRAYVHCSKRRAGITILLINLSKHTTFTVAVSNGVKVVLQAESMK 446

Query: 438 D------------------SQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPS 479
                              S G   REEYHL+P+ G+++S ++LLNG PL  T + DIP 
Sbjct: 447 RKSFLETIKSKVSWVGNKASDGYLNREEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPK 506

Query: 480 MEPKLADRYSPITVAPHSIVFATLRDFKAPACA 512
           +EP      SP+ + P SI F  L  F APAC+
Sbjct: 507 LEPVRHGVKSPVYINPLSISFIVLPTFDAPACS 539

Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme. Cleaves heparan sulfate proteoglycans (HSPGs) into heparan sulfate side chains and core proteoglycans.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -

>sp\|Q9FF10\|HPSE1_ARATH Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1	Back alignment and function description

>sp\|Q9FZP1\|HPSE3_ARATH Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2	Back alignment and function description

>sp\|Q9LRC8\|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS PE=1 SV=1	Back alignment and function description

>sp\|Q9Y251\|HPSE_HUMAN Heparanase OS=Homo sapiens GN=HPSE PE=1 SV=2	Back alignment and function description

>sp\|Q71RP1\|HPSE_RAT Heparanase OS=Rattus norvegicus GN=Hpse PE=2 SV=1	Back alignment and function description

>sp\|Q6YGZ1\|HPSE_MOUSE Heparanase OS=Mus musculus GN=Hpse PE=1 SV=3	Back alignment and function description

>sp\|Q9MYY0\|HPSE_BOVIN Heparanase OS=Bos taurus GN=HPSE PE=2 SV=2	Back alignment and function description

>sp\|Q90YK5\|HPSE_CHICK Heparanase OS=Gallus gallus GN=HPSE PE=1 SV=1	Back alignment and function description

>sp\|B2RY83\|HPSE2_MOUSE Inactive heparanase-2 OS=Mus musculus GN=Hpse2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		512
224108906		518	predicted protein [Populus trichocarpa]	0.984	0.972	0.709	0.0
255542100		596	Heparanase precursor, putative [Ricinus	0.964	0.828	0.712	0.0
225423535		522	PREDICTED: heparanase-like protein 2-lik	0.990	0.971	0.671	0.0
297738057		524	unnamed protein product [Vitis vinifera]	0.990	0.967	0.671	0.0
356502592		518	PREDICTED: heparanase-like protein 2-lik	0.972	0.961	0.668	0.0
449435316		496	PREDICTED: heparanase-like protein 1-lik	0.962	0.993	0.655	0.0
356502596		525	PREDICTED: heparanase-like protein 2-lik	0.962	0.939	0.663	0.0
357487449		505	Heparanase-like protein [Medicago trunca	0.958	0.972	0.636	0.0
449478642		1028	PREDICTED: probable S-acyltransferase At	0.777	0.387	0.660	1e-169
147815439		851	hypothetical protein VITISV_009131 [Viti	0.886	0.533	0.560	1e-167

>gi\|224108906\|ref\|XP_002315010.1\| predicted protein [Populus trichocarpa] gi\|222864050\|gb\|EEF01181.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/510 (70%), Positives = 426/510 (83%), Gaps = 6/510 (1%)

Query: 3   FCYTTFMHCTGKDVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLD 62
            C+++   C   DVKV VQGVTSIA TDDNF+CAT+DWWP  KCDYNQCPWGK+G+LNLD
Sbjct: 15  LCFSSL--CAADDVKVFVQGVTSIAKTDDNFICATLDWWPSEKCDYNQCPWGKAGLLNLD 72

Query: 63  LKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMN 122
           L NKIL+NAIKAF PLRIR+GGSLQDQ++Y+VG+  KK PHFK + DGLFGFSKG L M+
Sbjct: 73  LNNKILANAIKAFDPLRIRLGGSLQDQLVYQVGDFIKKFPHFKKQDDGLFGFSKGSLPMD 132

Query: 123 RWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIE 182
           RWD++NDLF QT A +TFGLNALIG++KS  + TLW G+WN++NARD MKYT SKGYKI+
Sbjct: 133 RWDQLNDLFKQTNAKITFGLNALIGKRKSD-NSTLWVGEWNSKNARDFMKYTASKGYKID 191

Query: 183 SYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNT 242
           SYELGNELCASGVSA++ A+QYAKDI+ LK +V+E+YPD  TQP+VLGPAGF+D +WF T
Sbjct: 192 SYELGNELCASGVSARLEADQYAKDIIQLKEIVKELYPDRETQPRVLGPAGFYDTEWFKT 251

Query: 243 FLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSG 302
           FLE SG   VDG+THHIYNLG   D  LIN+IQDPY+LD+IA+T+KD+   VKEFGPW+G
Sbjct: 252 FLEVSGPHAVDGVTHHIYNLGV--DKTLINKIQDPYFLDEIAETFKDLENVVKEFGPWAG 309

Query: 303 AWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTF 362
            WVGE+GGA+NSGGK VSHTF +GFW+LDQLGMT+TFNHKV+CRQ LIGGNY LLNTT+F
Sbjct: 310 PWVGESGGAYNSGGKDVSHTFVNGFWYLDQLGMTATFNHKVYCRQTLIGGNYGLLNTTSF 369

Query: 363 IPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVS 422
           IPNPDYYG+LLWHRLMGK VLAT    SPYLR Y+HCSK+KPGIT+L+IN+SNSTS DVS
Sbjct: 370 IPNPDYYGALLWHRLMGKTVLATNHFGSPYLRTYTHCSKQKPGITMLIINMSNSTSIDVS 429

Query: 423 VINDMNLYPSQEQTQDSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEP 482
           V ND N YP   +     G   REEYHLTP+ GNIQSDVVLLNGTPL+LT+S DIPS+ P
Sbjct: 430 VTNDENKYPHNYRMT-VNGSNQREEYHLTPKDGNIQSDVVLLNGTPLQLTSSQDIPSLSP 488

Query: 483 KLADRYSPITVAPHSIVFATLRDFKAPACA 512
            + D  SPI VAP SIV+ T+RDFKAPACA
Sbjct: 489 MIVDSSSPIRVAPDSIVYVTIRDFKAPACA 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542100\|ref\|XP_002512114.1\| Heparanase precursor, putative [Ricinus communis] gi\|223549294\|gb\|EEF50783.1\| Heparanase precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225423535\|ref\|XP_002274743.1\| PREDICTED: heparanase-like protein 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297738057\|emb\|CBI27258.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356502592\|ref\|XP_003520102.1\| PREDICTED: heparanase-like protein 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449435316\|ref\|XP_004135441.1\| PREDICTED: heparanase-like protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356502596\|ref\|XP_003520104.1\| PREDICTED: heparanase-like protein 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|357487449\|ref\|XP_003614012.1\| Heparanase-like protein [Medicago truncatula] gi\|355515347\|gb\|AES96970.1\| Heparanase-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449478642\|ref\|XP_004155378.1\| PREDICTED: probable S-acyltransferase At1g69420-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147815439\|emb\|CAN63833.1\| hypothetical protein VITISV_009131 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		512
TAIR\|locus:2163243		539	GUS1 "AT5G61250" [Arabidopsis	0.800	0.760	0.570	7.1e-154
TAIR\|locus:2142768		543	GUS2 "AT5G07830" [Arabidopsis	0.818	0.771	0.556	6.4e-153
TAIR\|locus:2183542		536	GUS3 "AT5G34940" [Arabidopsis	0.994	0.949	0.451	7.6e-128
UNIPROTKB\|Q9LRC8		527	SGUS "Baicalin-beta-D-glucuron	0.951	0.924	0.412	3.7e-103
UNIPROTKB\|E2RST8		545	HPSE "Uncharacterized protein"	0.716	0.673	0.323	1.5e-35
UNIPROTKB\|Q9Y251		543	HPSE "Heparanase" [Homo sapien	0.718	0.677	0.314	1.9e-35
UNIPROTKB\|F1RVE1		542	HPSE "Uncharacterized protein"	0.736	0.695	0.304	4e-35
RGD\|61969		536	Hpse "heparanase" [Rattus norv	0.673	0.643	0.324	7.5e-34
MGI\|MGI:1343124		535	Hpse "heparanase" [Mus musculu	0.720	0.689	0.310	3.1e-33
UNIPROTKB\|F1N1G1		545	HPSE "Heparanase" [Bos taurus	0.718	0.675	0.302	7.5e-31

TAIR\|locus:2163243 GUS1 "AT5G61250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1356 (482.4 bits), Expect = 7.1e-154, Sum P(2) = 7.1e-154
 Identities = 235/412 (57%), Positives = 310/412 (75%)

Query:    18 VTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQP 77
             + + G   IA TD+NF+CAT+DWWP  KC+Y+QCPWG + ++NL+L + +L+ AI+AF+ 
Sbjct:    29 LVIDGSRRIAETDENFICATLDWWPPEKCNYDQCPWGYASLINLNLASPLLAKAIQAFRT 88

Query:    78 LRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAM 137
             LRIR+GGSLQDQV+Y VG+    C  FK   DGLFGFS+GCL M RWDE+N  FN TGA+
Sbjct:    89 LRIRIGGSLQDQVIYDVGDLKTPCTQFKKTDDGLFGFSEGCLYMKRWDEVNHFFNATGAI 148

Query:   138 MTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSA 197
             +TFGLNAL GR  +K + T W GDW+  N +D M YT+SKGY I+S+E GNEL  SG+ A
Sbjct:   149 VTFGLNALHGR--NKLNGTAWGGDWDHTNTQDFMNYTVSKGYAIDSWEFGNELSGSGIWA 206

Query:   198 KVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTH 257
              VS E Y KD++ LKN+++ +Y ++ T+P V+ P GFF++QW++  L  SG  V+D LTH
Sbjct:   207 SVSVELYGKDLIVLKNVIKNVYKNSRTKPLVVAPGGFFEEQWYSELLRLSGPGVLDVLTH 266

Query:   258 HIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGK 317
             HIYNLGPGNDP+L+N+I DP YL  I++ + ++++T++E GPW+ AWVGEAGGAFNSGG+
Sbjct:   267 HIYNLGPGNDPKLVNKILDPNYLSGISELFANVNQTIQEHGPWAAAWVGEAGGAFNSGGR 326

Query:   318 YVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRL 377
              VS TF + FW+LDQLG++S  N KV+CRQAL+GG Y LL   TF+PNPDYY +LLWHRL
Sbjct:   327 QVSETFINSFWYLDQLGISSKHNTKVYCRQALVGGFYGLLEKETFVPNPDYYSALLWHRL 386

Query:   378 MGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNL 429
             MGK +L     AS YLR Y HCSK + GIT+LLINLS  T+F V+V N + +
Sbjct:   387 MGKGILGVQTTASEYLRAYVHCSKRRAGITILLINLSKHTTFTVAVSNGVKV 438

GO:0004566 "beta-glucuronidase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

TAIR\|locus:2142768 GUS2 "AT5G07830" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2183542 GUS3 "AT5G34940" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9LRC8 SGUS "Baicalin-beta-D-glucuronidase" [Scutellaria baicalensis (taxid:65409)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RST8 HPSE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y251 HPSE "Heparanase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVE1 HPSE "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|61969 Hpse "heparanase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1343124 Hpse "heparanase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N1G1 HPSE "Heparanase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L608	HPSE2_ARATH	3, ., 2, ., -, ., -	0.5282	0.9628	0.9146	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		512
pfam03662		320	pfam03662, Glyco_hydro_79n, Glycosyl hydrolase fam	0.0

>gnl\|CDD\|190706 pfam03662, Glyco_hydro_79n, Glycosyl hydrolase family 79, N-terminal domain	Back alignment and domain information

 Score =  528 bits (1363), Expect = 0.0
 Identities = 189/322 (58%), Positives = 238/322 (73%), Gaps = 2/322 (0%)

Query: 13  GKDVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAI 72
            ++  V V G  +IA TD+NFVCAT+DWWP  KCDY QCPWG + +LNLDL N IL NAI
Sbjct: 1   AEEATVVVDGRRAIAETDENFVCATLDWWPPEKCDYGQCPWGLASLLNLDLNNPILLNAI 60

Query: 73  KAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFN 132
           KAF PL+IR+GGSLQDQV+Y  G+    C  F     GLFGFS+GCL M+RWDE+N  F 
Sbjct: 61  KAFAPLKIRLGGSLQDQVIYDTGDLKTPCTPFTKNTSGLFGFSQGCLPMDRWDELNAFFQ 120

Query: 133 QTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCA 192
           +TGA++TFGLNAL GR  +K     W G W+  NA   ++YT+SKGYKI+S+ELGNEL  
Sbjct: 121 KTGAIITFGLNALRGR--NKLPKGTWGGAWDYTNAESFIRYTVSKGYKIDSWELGNELSG 178

Query: 193 SGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVV 252
           SGV A+VSAEQYAKD++ LKNLV+++Y +   +P V+ P GFFD+QWF   L+K+G  V+
Sbjct: 179 SGVGARVSAEQYAKDLIKLKNLVKDVYQNVRPKPLVIAPGGFFDQQWFTELLDKTGPSVL 238

Query: 253 DGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAF 312
           D LTHHIYNLGPG DP LI +I DP YLD  A+T+ D+ + ++  G W+ AWVGEAGGA+
Sbjct: 239 DVLTHHIYNLGPGVDPHLIEKILDPSYLDGEAKTFSDLQQIIQSHGTWAVAWVGEAGGAY 298

Query: 313 NSGGKYVSHTFADGFWFLDQLG 334
           NSGG  VS+TF + FW+LDQLG
Sbjct: 299 NSGGNLVSNTFINSFWYLDQLG 320

Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesised as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumour cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity. Length = 320

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		512
PF03662		319	Glyco_hydro_79n: Glycosyl hydrolase family 79, N-t	100.0
COG3534		501	AbfA Alpha-L-arabinofuranosidase [Carbohydrate tra	100.0
PF01229		486	Glyco_hydro_39: Glycosyl hydrolases family 39; Int	99.64
smart00813		189	Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminu	99.12
PF11790		239	Glyco_hydro_cc: Glycosyl hydrolase catalytic core;	98.87
PF06964		177	Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-termin	98.79
PF02055		496	Glyco_hydro_30: O-Glycosyl hydrolase family 30; In	98.49
PF00150		281	Cellulase: Cellulase (glycosyl hydrolase family 5)	98.43
PF12891		239	Glyco_hydro_44: Glycoside hydrolase family 44; Int	98.32
COG5520		433	O-Glycosyl hydrolase [Cell envelope biogenesis, ou	98.2
PF07745		332	Glyco_hydro_53: Glycosyl hydrolase family 53; Inte	98.0
PF12876		88	Cellulase-like: Sugar-binding cellulase-like; Inte	97.66
smart00633		254	Glyco_10 Glycosyl hydrolase family 10.	97.3
COG3867		403	Arabinogalactan endo-1,4-beta-galactosidase [Carbo	97.18
COG3664		428	XynB Beta-xylosidase [Carbohydrate transport and m	96.38
PRK10150		604	beta-D-glucuronidase; Provisional	95.8
PF14587		384	Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; P	95.71
PF02836		298	Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM	91.78
KOG2566		518	consensus Beta-glucocerebrosidase [Carbohydrate tr	91.13
PF00332		310	Glyco_hydro_17: Glycosyl hydrolases family 17; Int	90.11
PF03198		314	Glyco_hydro_72: Glucanosyltransferase; InterPro: I	89.7
COG5309		305	Exo-beta-1,3-glucanase [Carbohydrate transport and	89.2

>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3	Back alignment and domain information

Probab=100.00  E-value=2e-77  Score=591.64  Aligned_cols=318  Identities=56%  Similarity=1.061  Sum_probs=153.5

Q ss_pred             ceEEEEeCcccccccCCceeEEEeecCCCCcCCCCCCCCCCccccCCCcCcHHHHHHHHHcCCCEEeecccccceeeEec
Q 041499           15 DVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKV   94 (512)
Q Consensus        15 ~~~v~v~~~~~~~~i~~~f~g~sie~w~~~~~~y~~~~wg~~~~~~~~l~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~~   94 (512)
                      .++|.|+...+++++|++|+|.++||||++||+|++|+||++||+|+||+++.|++++|+|+|.+||+||+.||+.+|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~   81 (319)
T PF03662_consen    2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT   81 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHH
Q 041499           95 GNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYT  174 (512)
Q Consensus        95 ~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~  174 (512)
                      +...++|.|+.++++..|||+++|+++++||++++|++++|+++|||||++.|+...  .++++.+.|+++||+++++|+
T Consensus        82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~--~~~~~~g~WnssNA~~Ll~Yt  159 (319)
T PF03662_consen   82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQL--ADRDWDGSWNSSNAQSLLKYT  159 (319)
T ss_dssp             ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHH--HHHHHHHHHHHH-TTTEEEEE
T ss_pred             cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCC--CCCCcCCCCChHHHHHHHHHH
Confidence            987889999888888899999999999999999999999999999999999886311  023566899999999999999


Q ss_pred             HHcCceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCcce
Q 041499          175 ISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDG  254 (512)
Q Consensus       175 ~~~g~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~id~  254 (512)
                      .+++|+|++|||||||++++.+..+++++|++||.+++++|+++|+++..+|+++||+.+.+.+|+++||++.+++.||+
T Consensus       160 ~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~  239 (319)
T PF03662_consen  160 ASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDA  239 (319)
T ss_dssp             ESS-GGG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SE
T ss_pred             HHcCCCccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCE
Confidence            99999999999999999988889999999999999999999999887778899999999888999999999988656999


Q ss_pred             EEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCCCcchHHHHHHHHHHHHH
Q 041499          255 LTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLG  334 (512)
Q Consensus       255 vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~~vsdtf~aalw~lD~l~  334 (512)
                      ||||+|+.++|.++.++++|++|++|+.+..+++.+++++++++|++++|+|||+++|++|+++|||+|+++|||||+||
T Consensus       240 vT~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG  319 (319)
T PF03662_consen  240 VTWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG  319 (319)
T ss_dssp             EEEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred             EEEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence            99999999888778888999999999999999999999999999999999999999999999999999999999999997

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.

>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3	Back alignment and domain information

>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus	Back alignment and domain information

>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins	Back alignment and domain information

>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3	Back alignment and domain information

>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases	Back alignment and domain information

>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3	Back alignment and domain information

>smart00633 Glyco_10 Glycosyl hydrolase family 10	Back alignment and domain information

>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10150 beta-D-glucuronidase; Provisional	Back alignment and domain information

>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B	Back alignment and domain information

>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3	Back alignment and domain information

>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane	Back alignment and domain information

>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		512
3vny_A		488	Crystal Structure Of Beta-Glucuronidase From Acidob		6e-07

>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum Length = 488

Back alignment and structure

Iteration: 1

Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 77/344 (22%), Positives = 131/344 (38%), Gaps = 61/344 (17%) Query: 80 IRVGGSLQDQVLY-KVGNSAKKCPHFKLRKD-GLFGFSKGCLSMNRWDEINDLFNQTGAM 137 +R+GG+ + + + H D G ++ ++ + +++ ++TG Sbjct: 75 LRIGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVNNLSEFLDKTGWK 134 Query: 138 MTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISK--GYKIESYELGNE---LCA 192 + +GLN G +NA D Y + ++ +++LGNE Sbjct: 135 LIYGLNL---------------GKGTPENAADEAAYVMETIGADRLLAFQLGNEPDLFYR 179 Query: 193 SGVS-AKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDV 251 +G+ A YA D +R+ P+A GP ++ +W F +K DV Sbjct: 180 NGIRPASYDFAAYAGDWQRFFTAIRKRVPNA----PFAGPDTAYNTKWLVPFADKFKHDV 235 Query: 252 VDGLTHHIYNLGPGNDPEL-INRIQ--DPYYLDQIAQTYKDISETVKEFGPWSGAWVGEA 308 ++ H Y GP DP + I R+ +P L + A + ++T F + E Sbjct: 236 -KFISSHYYAEGPPTDPSMTIERLMKPNPRLLGETAGLKQVEADTGLPF------RLTET 288 Query: 309 GGAFNSGGKYVSHTFADGFWFLDQL------GMTSTFNHKVFCRQALIGGNYALLNTTT- 361 + G + VS TFA W D + G T H GG Y Sbjct: 289 NSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGSTGINFH---------GGGYGWYTPVAG 339 Query: 362 -----FIPNPDYYGSLLWHRLMGKNVLA---TTQNASPYLRVYS 397 FI P+YYG LL+ + +L T +A+P L Y+ Sbjct: 340 TPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTDNSAAPLLTAYA 383

PyMOL of 3vny

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		512
3vny_A		488	Beta-glucuronidase; TIM barrel, greek-KEY, glycosi	4e-67
3ug3_A		504	Alpha-L-arabinofuranosidase; TIM barrel, hydrolase	1e-23
1qw9_A		502	Arabinosidase, alpha-L-arabinofuranosidase; hydrol	7e-14
2c7f_A		513	Alpha-L-arabinofuranosidase; glycosidase, xylan, a	8e-13
1w91_A		503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	2e-09
2y2w_A		574	Arabinofuranosidase; hydrolase, arabinoxylan, glyc	6e-08
1uhv_A		500	Beta-xylosidase; family 39 glycoside hydrolase, xy	7e-08
2e4t_A		519	Endoglucanase, xyloglucanase; TIM barrel, TIM-like	2e-07
2yih_A		524	CEL44C, xyloglucanase; hydrolase, GH44, endo-gluca	6e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3ik2_A		517	Endoglucanase A; TIM-like barrel, hydrolase; 2.20A	1e-05
3ii1_A		535	Cellulase; CELM2, glucanase-xyanase, glucanase, xy	6e-05

>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Length = 488	Back alignment and structure

 Score =  223 bits (568), Expect = 4e-67
 Identities = 82/509 (16%), Positives = 159/509 (31%), Gaps = 75/509 (14%)

Query: 15  DVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKA 74
            V ++V           ++   + +       + N               N  L+  ++ 
Sbjct: 21  RVGLSVDASALGHTIPPDYTGLSYE--QAQMANPNY----------FSGANTQLAGFLRT 68

Query: 75  F-QPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRK--DGLFGFSKGCLSMNRWDEINDLF 131
             +   +R+GG+  +   +                   G    ++  ++    + +++  
Sbjct: 69  LGRQGVLRIGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVNNLSEFL 128

Query: 132 NQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISK--GYKIESYELGNE 189
           ++TG  + +GLN                G    +NA D   Y +      ++ +++LGNE
Sbjct: 129 DKTGWKLIYGLNL---------------GKGTPENAADEAAYVMETIGADRLLAFQLGNE 173

Query: 190 ---LCASGV-SAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLE 245
                 +G+  A      YA D       +R+  P+        GP   ++ +W   F +
Sbjct: 174 PDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVPN----APFAGPDTAYNTKWLVPFAD 229

Query: 246 KSGQDVVDGLTHHIYNLGPGNDPEL-INRIQDPYYLDQIAQTYKDISETVKEFGPWSGAW 304
           K     V  ++ H Y  GP  DP + I R+  P    ++      + +   + G      
Sbjct: 230 KFK-HDVKFISSHYYAEGPPTDPSMTIERLMKPN--PRLLGETAGLKQVEADTGLP--FR 284

Query: 305 VGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLN------ 358
           + E    +  G + VS TFA   W  D +   +             GG Y          
Sbjct: 285 LTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAG---STGINFHGGGYGWYTPVAGTP 341

Query: 359 TTTFIPNPDYYGSLLWHRLMGKNVLAT---TQNASPYLRVYSHCSKEKPGITVLLINLSN 415
              FI  P+YYG LL+ +     +L       +A+P L  Y+    +     + L N + 
Sbjct: 342 EDGFIARPEYYGMLLFAQAGAGQLLGAKLTDNSAAPLLTAYALRGTDGR-TRIALFNKNL 400

Query: 416 STSFDVSVINDMNLYPSQEQTQDSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSL 475
               +V++                          L     +  +D V   G P+  + S 
Sbjct: 401 DADVEVAI--------------SGVASPSGTVLRLEAPRADDTTD-VTFGGAPVGASGSW 445

Query: 476 DIPSMEPK-LADRYSPITVAPHSIVFATL 503
                E          + +   S      
Sbjct: 446 SPLVQEYVPGHSGQFVLHMRKASGALLEF 474

PyMOL of 3vny

>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Length = 504	Back alignment and structure

>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Length = 502	Back alignment and structure

>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Length = 513	Back alignment and structure

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Length = 503	Back alignment and structure

>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Length = 574	Back alignment and structure

>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Length = 500	Back alignment and structure

>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A* Length = 519	Back alignment and structure

>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A* Length = 524	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum} Length = 517	Back alignment and structure

>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A Length = 535	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		512
3vny_A		488	Beta-glucuronidase; TIM barrel, greek-KEY, glycosi	100.0
2vrq_A		496	Alpha-L-arabinofuranosidase; hydrolase, glycosidas	100.0
3ug3_A		504	Alpha-L-arabinofuranosidase; TIM barrel, hydrolase	100.0
1qw9_A		502	Arabinosidase, alpha-L-arabinofuranosidase; hydrol	100.0
2c7f_A		513	Alpha-L-arabinofuranosidase; glycosidase, xylan, a	100.0
2y2w_A		574	Arabinofuranosidase; hydrolase, arabinoxylan, glyc	100.0
2e4t_A		519	Endoglucanase, xyloglucanase; TIM barrel, TIM-like	100.0
2yih_A		524	CEL44C, xyloglucanase; hydrolase, GH44, endo-gluca	100.0
3ii1_A		535	Cellulase; CELM2, glucanase-xyanase, glucanase, xy	100.0
3ik2_A		517	Endoglucanase A; TIM-like barrel, hydrolase; 2.20A	99.97
1w91_A		503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	99.94
4ekj_A		500	Beta-xylosidase; TIM-barrel fold, hemicellulase, h	99.91
1uhv_A		500	Beta-xylosidase; family 39 glycoside hydrolase, xy	99.88
3clw_A		507	Conserved exported protein; structural genomics, u	99.51
2y24_A		383	Xylanase; hydrolase, GH5 family, aldotetraouronic	99.43
2nt0_A		497	Glucosylceramidase; cerezyme, glucocerebrosidase,	99.21
3kl0_A		401	Glucuronoxylanase XYNC; alpha beta barrel, (beta/a	99.21
2wnw_A		447	Activated by transcription factor SSRB; hydrolase,	99.17
4aw7_A		591	GH86A beta-porphyranase; hydrolase, porphyran-hexa	98.89
1ur4_A		399	Galactanase; hydrolase, beta-1, glycoside hydrolas	98.87
1fob_A		334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	98.79
3aof_A		317	Endoglucanase; glycosyl hydrolase family 5, cellul	98.55
1hjs_A		332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	98.52
3nco_A		320	Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1	98.41
3pzg_A		383	Mannan endo-1,4-beta-mannosidase. glycosyl hydrol	98.41
3zr5_A		656	Galactocerebrosidase; hydrolase, GALC, glycosyl hy	98.41
3pzt_A		327	Endoglucanase; alpha/beta barrel, glycosyl hydrola	98.3
3jug_A		345	Beta-mannanase; TIM-barrel, glycosidase, hydrolase	98.19
1qnr_A		344	Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt	98.19
1rh9_A		373	Endo-beta-mannanase; endo-beta-mannase, retaining,	98.11
1uuq_A		440	Mannosyl-oligosaccharide glucosidase; hydrolase, m	98.06
1bqc_A		302	Protein (beta-mannanase); glycosyl hydrolase, fami	98.06
2jep_A		395	Xyloglucanase; family 5, plant cell WALL, hydrolas	98.0
3qho_A		458	Endoglucanase, 458AA long hypothetical endo-1,4-be	97.98
2whl_A		294	Beta-mannanase, baman5; glycoside hydrolase, hydro	97.97
3icg_A		515	Endoglucanase D; cellulase, xylanase, carbohydrate	97.97
3ndz_A		345	Endoglucanase D; cellotriose, xylanase, carbohydra	97.97
1ceo_A		343	Cellulase CELC; glycosyl hydrolase, family A/5 of	97.94
1ece_A		358	Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.	97.9
7a3h_A		303	Endoglucanase; hydrolase, cellulose degradation, g	97.88
1tvn_A		293	Cellulase, endoglucanase G; glycoside hydrolase, C	97.88
4hty_A		359	Cellulase; (alpha/beta)8 barrel, family 5 endogluc	97.87
1wky_A		464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	97.86
1nq6_A		302	XYS1; glycoside hydrolase family 10, xylanase, xyl	97.82
2cks_A		306	Endoglucanase E-5; carbohydrate metabolism, polysa	97.81
1egz_A		291	Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL	97.79
3hn3_A		613	Beta-G1, beta-glucuronidase; lysosomal enzyme, aci	97.79
4awe_A		387	Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana	97.74
1vjz_A		341	Endoglucanase; TM1752, structural genomics, JCSG,	97.73
1edg_A		380	Endoglucanase A; family A, cellulases, xylanases,	97.65
3cui_A		315	EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine	97.64
3ayr_A		376	Endoglucanase; TIM barrel, hydrolase, carbohydrate	97.64
1h1n_A		305	Endo type cellulase ENGI; hydrolase, glycosyl hydr	97.61
3l55_A		353	B-1,4-endoglucanase/cellulase; putative beta-1,4-e	97.49
3vup_A		351	Beta-1,4-mannanase; TIM barrel, digestive fluid, H	97.46
2osx_A		481	Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel	97.46
2w61_A		555	GAS2P, glycolipid-anchored surface protein 2; glyc	97.43
1h4p_A		408	Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca	97.33
1n82_A		331	Xylanase, intra-cellular xylanase; hydrolase; 1.45	97.3
3civ_A		343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	97.25
1g01_A		364	Endoglucanase; alpha/beta barrel, TIM barrel, hydr	97.19
3lpf_A		605	Beta-glucuronidase; alpha/beta barrel, sugar-bindi	97.18
3qr3_A		340	Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A	97.11
1ur1_A		378	Endoxylanase; hydrolase, family 10, glycoside hydr	97.1
2y8k_A		491	Arabinoxylanase, carbohydrate binding family 6; hy	97.1
3n9k_A		399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	97.07
1xyz_A		347	1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrola	97.06
1v0l_A		313	Endo-1,4-beta-xylanase A; glycoside hydrolase fami	97.04
3ur8_A		323	Glucan endo-1,3-beta-D-glucosidase; glucoside hydr	97.0
2dep_A		356	Xylanase B, thermostable celloxylanase; glycosidas	96.9
3fn9_A		692	Putative beta-galactosidase; structural genomics,	96.83
1ta3_B		303	Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I),	96.74
1i1w_A		303	Endo-1,4-beta-xylanase; xylan degradation, hydrola	96.68
2uwf_A		356	Endoxylanase, alkaline active endoxylanase; hydrol	96.67
2c0h_A		353	Mannan endo-1,4-beta-mannosidase; hydrolase, signa	96.64
3cmg_A		667	Putative beta-galactosidase; structural genomics,	96.62
3em5_A		316	Beta-1,3-glucanase; glycoprotein, rossmann fold, (	96.38
1r85_A		379	Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A	96.18
3u7b_A		327	Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET	96.11
3emz_A		331	Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 ba	96.06
1w32_A		348	Endo-1,4-beta-xylanase A precursor; mutant, calciu	95.98
3niy_A		341	Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.5	95.81
1kwg_A		645	Beta-galactosidase; TIM barrel, glycoside hydrolas	95.45
3gm8_A		801	Glycoside hydrolase family 2, candidate beta-GLYC;	95.4
2cyg_A		312	Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be	95.39
2d1z_A		436	Endo-1,4-beta-D-xylanase; TIM-barrel, retaining en	95.26
1ghs_A		306	1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg	94.84
1aq0_A		306	1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl	94.63
1us2_A		530	Xylanase10C, endo-beta-1,4-xylanase; hydrolase, ca	94.15
4f8x_A		335	Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET	93.75
1yq2_A		1024	Beta-galactosidase; glycosyl hydrolase family 2, T	93.7
3tp4_A		475	Computational design of enzyme; structural genomic	92.41
2v3g_A		283	Endoglucanase H; beta-1 4 beta-1 3 glucanase, lich	91.52
2vx5_A		396	Cellvibrio japonicus mannanase cjman26C; hydrolase	91.52
3oba_A		1032	Beta-galactosidase; TIM barrel, tetramer, GH2, gly	91.2
1odz_A		386	Mannanase A; hydrolase, family 26, glycoside-hydro	90.96
2je8_A		848	Beta-mannosidase; glycoside hydrolase, hydrolase;	89.95
2ddx_A		333	Beta-1,3-xylanase; glycoside hydrolase, TIM barrel	84.95
1jz7_A		1023	Lactase, beta-galactosidase, LACZ; TIM barrel (alp	84.23
3tty_A		675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	82.12
3bga_A		1010	Beta-galactosidase; NYSGXRC, protein structure ini	81.63

>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A*	Back alignment and structure

Probab=100.00  E-value=7.2e-70  Score=579.72  Aligned_cols=441  Identities=19%  Similarity=0.264  Sum_probs=355.2

Q ss_pred             cCcceEEEEeCcccccccCCceeEEEeecCCCCcCCCCCCCCCCccccC---CCcCcHHHHHHHHHcCC-CEEeeccccc
Q 041499           12 TGKDVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLN---LDLKNKILSNAIKAFQP-LRIRVGGSLQ   87 (512)
Q Consensus        12 ~~~~~~v~v~~~~~~~~i~~~f~g~sie~w~~~~~~y~~~~wg~~~~~~---~~l~~~~l~~l~k~l~p-~~lR~GG~~~   87 (512)
                      ++.+++|+|++++++++||++|+|++||  +             +.+.+   +++.++.|++++|+|+| ++||+|||++
T Consensus        18 ~~~~~~v~v~~~~~~~~v~~~f~g~~~e--~-------------s~i~~~~~~~~~~~~v~~l~k~L~~~~~lR~GG~~~   82 (488)
T 3vny_A           18 SPVRVGLSVDASALGHTIPPDYTGLSYE--Q-------------AQMANPNYFSGANTQLAGFLRTLGRQGVLRIGGNTS   82 (488)
T ss_dssp             CCEEEEEEEEEEEEEEEECTTCCEEEEE--G-------------GGGGCTTTSSTTCHHHHHHHHHHCSSCEEEEESGGG
T ss_pred             CCCcEEEEEcCCCCCCccCccceEeeee--H-------------hhccCccccCcCCHHHHHHHHHhCCCeEEEeCcccc
Confidence            5778999999999999999999999999  2             22333   46778999999999999 9999999999


Q ss_pred             ceeeEecCCCCCccCCcc-cCCCCcc-cccccccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChH
Q 041499           88 DQVLYKVGNSAKKCPHFK-LRKDGLF-GFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQ  165 (512)
Q Consensus        88 D~~~~~~~~~~~~~~p~~-~~~~~~~-g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~  165 (512)
                      |.++|+++++|...+|.. .+....+ ..+..++++.+||+|++||+++|+++||+||++.+               +++
T Consensus        83 d~~~w~~g~~p~~~rp~~~~~~~~~~~~~~~~~~~~~~~def~~f~~~~G~~~~~~lN~g~~---------------~~~  147 (488)
T 3vny_A           83 EYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVNNLSEFLDKTGWKLIYGLNLGKG---------------TPE  147 (488)
T ss_dssp             GSEEECTTCCGGGSCTTCCCCCCCSSSCCCCEEECHHHHHHHHHHHHHHCCEEEEEECTTTS---------------CHH
T ss_pred             ceEEEcCCCCCcccCcccccCcchhhccccCceeCHHHHHHHHHHHHHhCCEEEEEEeCCCC---------------CHH
Confidence            999999998876666632 1111000 01246999999999999999999999999999865               579


Q ss_pred             HHHHHHHHHHH--cCceeeEeeeccccCCC---C-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhH
Q 041499          166 NARDLMKYTIS--KGYKIESYELGNELCAS---G-VSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQW  239 (512)
Q Consensus       166 ~A~~~~~y~~~--~g~~v~~wElGNEp~~~---~-~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w  239 (512)
                      +|+++++|+..  ++++|++||||||||++   + ++.+|++++|+++|++++++||+++|+.    +++||+...+..|
T Consensus       148 ~a~~~v~y~~~~~~~~~l~~welGNEpd~~~~~G~~~~~~t~~~Y~~~~~~~a~a~k~~~p~~----~l~gp~~~~~~~w  223 (488)
T 3vny_A          148 NAADEAAYVMETIGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVPNA----PFAGPDTAYNTKW  223 (488)
T ss_dssp             HHHHHHHHHHHHHCTTTEEEEEESSCGGGHHHHSSSCTTCCHHHHHHHHHHHHHHHHHHCTTC----CEEEEEESSCGGG
T ss_pred             HHHHHHHHHhhcccCCceeEEEecCcccccccCCccCCCCCHHHHHHHHHHHHHHHHhhCCCC----eEEeCCCCCCchh
Confidence            99999999986  99999999999999963   3 4678999999999999999999998764    7899998767899


Q ss_pred             HHHHHhhhCCCCcceEEEEecCCCCCCCh-hhhhccCChHH-HHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCC
Q 041499          240 FNTFLEKSGQDVVDGLTHHIYNLGPGNDP-ELINRIQDPYY-LDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGK  317 (512)
Q Consensus       240 ~~~~l~~~~~~~id~vs~H~Y~~~~g~~~-~~~~~~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~  317 (512)
                      ++.||+..+ ..||++|+|+|+.+++.++ .+++++|+++. ++.+   ++.+++++++  +++|+||||||+++|+|.+
T Consensus       224 ~~~~l~~~~-~~vd~vS~H~Y~~g~~~~~~~t~~~ll~~~~~l~~~---~~~~~~~~~~--~g~p~~lgEtnsa~~~G~~  297 (488)
T 3vny_A          224 LVPFADKFK-HDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLGE---TAGLKQVEAD--TGLPFRLTETNSCYQGGKQ  297 (488)
T ss_dssp             HHHHHHHTG-GGCSEEEEEEEEECCTTCTTCCHHHHTSCCHHHHHH---HHHHHHHHHH--HCCCEEEEEEEEESTTCCT
T ss_pred             hHHHHHhcC-ccCCEEEEeeCCCCCCCCCCcCHHHHcCchHHHHHH---HHHHHHHHhc--CCCCEEEeccccCCCCCCC
Confidence            999999776 4899999999997654333 34678888863 4443   3344444443  4789999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHhhccceeeeeecccCCccccccCCC---CccCCcchHHHHHHHhcCCceEEeecC-CC--C
Q 041499          318 YVSHTFADGFWFLDQLGMTSTFNHKVFCRQALIGGNYALLNTTT---FIPNPDYYGSLLWHRLMGKNVLATTQN-AS--P  391 (512)
Q Consensus       318 ~vsdtf~aalw~lD~l~~~a~~g~~v~~~q~l~gg~Y~l~~~~~---~~p~P~Yy~~ll~~~~~G~~vl~~~~~-~~--~  391 (512)
                      ++||+|++|||++|+++++|+.|++++++|.++|+.|+++..+.   +.|+|+||+++||++++|.+++.+++. ..  .
T Consensus       298 ~vs~tf~aalw~~D~~~~~a~~g~~~v~~h~g~g~~y~~l~~~~~~g~~~~P~Yy~~~l~~~~~G~~vl~~~~~~~~~~~  377 (488)
T 3vny_A          298 GVSDTFAAALWAGDLMYQQAAAGSTGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTDNSAAP  377 (488)
T ss_dssp             TTTTSTHHHHHHHHHHHHHHHHTCCCEEEECCTTCTTCSEEEETTTEEEECHHHHHHHHHHHHCSEEEEEEEEESCTTST
T ss_pred             CcCHHHHHHHHHHHHHHHHHHcCCcEEEEEcccCCCcceeecCCCcccccCCcHHHHHHHHHHcCCceEeEeeccCCCCc
Confidence            99999999999999999999999998888888899999988763   789999999999999999999988763 23  3


Q ss_pred             ceEEEEEEecCCCCEEEEEEeCCCCceeEEEEeeCCCCCCcccccccCCCCCceEEEEEecCCCCcccceEEECCeeccc
Q 041499          392 YLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYPSQEQTQDSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKL  471 (512)
Q Consensus       392 ~v~~YA~~~~~~g~v~l~liN~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNg~~l~~  471 (512)
                      .+.+||.+.+ ++.++|+|||++.++.++|+|+  |.            ..+.+....|++++.+.. .+|+++|++++.
T Consensus       378 ~~~ayA~~~~-~~~~~vlliN~~~~~~~~v~l~--G~------------~~~~~~v~rLta~~~~a~-~~it~~G~s~~~  441 (488)
T 3vny_A          378 LLTAYALRGT-DGRTRIALFNKNLDADVEVAIS--GV------------ASPSGTVLRLEAPRADDT-TDVTFGGAPVGA  441 (488)
T ss_dssp             TEEEEEEEET-TSCEEEEEEECCSSCCEEEEEE--SC------------CCSEEEEEEEECSSTTCS-SCCEETTBCCCG
T ss_pred             cEEEEEEEcC-CCcEEEEEEECCCCccEEEEec--CC------------CCceEEEEEEECCCcccc-cCceECCEEecC
Confidence            4555555543 5789999999999876555554  53            235788899999853333 479999999986


Q ss_pred             CCCCCCCCCCccccCCC-CceEEcCceEEEEEecCCCC
Q 041499          472 TNSLDIPSMEPKLADRY-SPITVAPHSIVFATLRDFKA  508 (512)
Q Consensus       472 ~~~~~~p~l~~~~~~~~-~~i~lpp~S~~f~vl~~~~~  508 (512)
                      +.+..+|.-....+..+ .+++|||.|++++.|+...+
T Consensus       442 ~~~~~~~~~~~~~v~~g~~~v~v~a~sa~lv~f~~~~~  479 (488)
T 3vny_A          442 SGSWSPLVQEYVPGHSGQFVLHMRKASGALLEFAKLAA  479 (488)
T ss_dssp             GGCCCCSCCEEEECBTTBEEEEECSSEEEEEEECCTTC
T ss_pred             CCceeecCeEEEEecCCeEEEEEcCCeEEEEEehhhhh
Confidence            54554454444444433 46899999999999977654

PyMOL of 3vny

>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A	Back alignment and structure

>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A	Back alignment and structure

>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A	Back alignment and structure

>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A	Back alignment and structure

>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum}	Back alignment and structure

>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A*	Back alignment and structure

>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A*	Back alignment and structure

>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A	Back alignment and structure

>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum}	Back alignment and structure

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A*	Back alignment and structure

>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}	Back alignment and structure

>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A	Back alignment and structure

>3clw_A Conserved exported protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Bacteroides fragilis}	Back alignment and structure

>2y24_A Xylanase; hydrolase, GH5 family, aldotetraouronic acid; HET: XYP GCV PG4 PGE; 1.39A {Erwinia chrysanthemi} PDB: 1nof_A*	Back alignment and structure

>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ...	Back alignment and structure

>3kl0_A Glucuronoxylanase XYNC; alpha beta barrel, (beta/alpha)8 barrel (beta/alpha)8 + beta motif family, hydrolase; HET: TAR HIS; 1.64A {Bacillus subtilis} PDB: 3gtn_A* 3kl3_A* 3kl5_A*	Back alignment and structure

>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}	Back alignment and structure

>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}	Back alignment and structure

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*	Back alignment and structure

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A	Back alignment and structure

>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*	Back alignment and structure

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*	Back alignment and structure

>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*	Back alignment and structure

>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*	Back alignment and structure

>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*	Back alignment and structure

>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A	Back alignment and structure

>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}	Back alignment and structure

>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*	Back alignment and structure

>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3	Back alignment and structure

>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*	Back alignment and structure

>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*	Back alignment and structure

>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*	Back alignment and structure

>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*	Back alignment and structure

>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A	Back alignment and structure

>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*	Back alignment and structure

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A	Back alignment and structure

>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A	Back alignment and structure

>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A	Back alignment and structure

>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*	Back alignment and structure

>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*	Back alignment and structure

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3	Back alignment and structure

>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3	Back alignment and structure

>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*	Back alignment and structure

>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3	Back alignment and structure

>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*	Back alignment and structure

>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}	Back alignment and structure

>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3	Back alignment and structure

>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3	Back alignment and structure

>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*	Back alignment and structure

>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*	Back alignment and structure

>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A	Back alignment and structure

>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}	Back alignment and structure

>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*	Back alignment and structure

>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*	Back alignment and structure

>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3	Back alignment and structure

>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A	Back alignment and structure

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}	Back alignment and structure

>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*	Back alignment and structure

>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A	Back alignment and structure

>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}	Back alignment and structure

>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A*	Back alignment and structure

>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}	Back alignment and structure

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A	Back alignment and structure

>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3	Back alignment and structure

>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A	Back alignment and structure

>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A	Back alignment and structure

>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium}	Back alignment and structure

>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}	Back alignment and structure

>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3	Back alignment and structure

>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A	Back alignment and structure

>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*	Back alignment and structure

>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3	Back alignment and structure

>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}	Back alignment and structure

>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A*	Back alignment and structure

>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A	Back alignment and structure

>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum}	Back alignment and structure

>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*	Back alignment and structure

>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A	Back alignment and structure

>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A	Back alignment and structure

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*	Back alignment and structure

>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus}	Back alignment and structure

>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3	Back alignment and structure

>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A	Back alignment and structure

>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3	Back alignment and structure

>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A	Back alignment and structure

>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A	Back alignment and structure

>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}	Back alignment and structure

>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3	Back alignment and structure

>3tp4_A Computational design of enzyme; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.98A {Synthetic construct} PDB: 2x2y_A 2bvy_A 2bvt_A	Back alignment and structure

>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A*	Back alignment and structure

>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A*	Back alignment and structure

>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A	Back alignment and structure

>1odz_A Mannanase A; hydrolase, family 26, glycoside-hydrolase, glycosynthase, manno-oligosaccharide; HET: MAN BMA; 1.4A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1r7o_A* 2whm_A* 1j9y_A 1gvy_A* 1gw1_A*	Back alignment and structure

>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*	Back alignment and structure

>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel, hydrola; 0.86A {Vibrio SP}	Back alignment and structure

>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...	Back alignment and structure

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*	Back alignment and structure

>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		512
d1uhva2		346	c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic do	4e-06
d1qw9a2		367	c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, ca	2e-04
d1ur4a_		387	c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus lichen	4e-04

>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Length = 346	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-D-xylosidase, catalytic domain
species: Thermoanaerobacterium saccharolyticum [TaxId: 28896]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 42/283 (14%), Positives = 82/283 (28%), Gaps = 34/283 (12%)

Query: 123 RWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWE-------------GDWNAQNARD 169
             D I D F + G      +  +  +  S T    +               D        
Sbjct: 68  YIDRIFDSFLEIGIRPFVEIGFMPKKLASGTQTVFYWEGNVTPPKDYEKWSDLVKAVLHH 127

Query: 170 LMKYTISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVL 229
            +     +      +E+ NE            ++Y K        ++E+  +     KV 
Sbjct: 128 FISRYGIEEVLKWPFEIWNEPNLKEFWKDADEKEYFKLYKVTAKAIKEVNENL----KVG 183

Query: 230 GPAGFF-DKQWFNTFLE--KSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQT 286
           GPA       W   FL         VD ++ H Y    G     +   Q+    + +   
Sbjct: 184 GPAICGGADYWIEDFLNFCYEENVPVDFVSRHAYTSKQGEYTPHLIY-QEIMPSEYMLNE 242

Query: 287 YKDISETVKEFG-PWSGAWVGEAGGAFNSGGKYVSHTFADGFWF------LDQLGMTSTF 339
           +K + E +K    P     + E   +++         F   +         D +   S +
Sbjct: 243 FKTVREIIKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAYIARILSEGGDYVDSFSYW 302

Query: 340 N-----HKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRL 377
                  +    ++   G + L+     IP P +Y    ++ +
Sbjct: 303 TFSDVFEERDVPRSQFHGGFGLV-ALNMIPKPTFYTFKFFNAM 344

PyMOL of d1uhva2

>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 367	Back information, alignment and structure

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Length = 387	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		512
d1qw9a2		367	Alpha-L-arabinofuranosidase, catalytic domain {Bac	100.0
d1uhva2		346	Beta-D-xylosidase, catalytic domain {Thermoanaerob	99.81
d1ur4a_		387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	98.95
d1foba_		334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	98.87
d1xyza_		320	Xylanase {Clostridium thermocellum, XynZ [TaxId: 1	98.66
d1qw9a1		130	Alpha-l-arabinofuranosidase {Bacillus stearothermo	98.64
d1hjsa_		332	Beta-1,4-galactanase {Thielavia heterothallica, ak	98.61
d1vbua1		324	Xylanase {Thermotoga maritima [TaxId: 2336]}	98.59
d1uuqa_		410	Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	98.42
d2c7fa1		131	Alpha-l-arabinofuranosidase {Clostridium thermocel	98.41
d1fh9a_		312	Xylanase A, catalytic core {Cellulomonas fimi [Tax	98.38
d1ceoa_		340	Endoglucanase CelC {Clostridium thermocellum [TaxI	98.36
d1nq6a_		302	Xylanase A, catalytic core {Streptomyces halstedii	98.35
d1rh9a1		370	Beta-mannanase {Tomato (Lycopersicon esculentum) [	98.23
d1nofa2		277	Glycosyl hydrolase family 5 xylanase, catalytic do	98.09
d1egza_		291	Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId:	98.08
d1v0la_		302	Xylanase A, catalytic core {Streptomyces lividans	98.08
d1ecea_		358	Endocellulase E1 {Acidothermus cellulolyticus [Tax	98.05
d1qnra_		344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	98.03
d1n82a_		330	Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId	98.02
d1tvna1		293	Endoglucanase Cel5a {Pseudoalteromonas haloplankti	98.01
d1vjza_		325	Endoglucanase homologue TM1752 {Thermotoga maritim	97.99
d1bqca_		302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	97.97
d7a3ha_		300	Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId	97.93
d1wkya2		297	Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449	97.88
d1edga_		380	Endoglucanase CelA {Clostridium cellulolyticum [Ta	97.81
d1h1na_		305	Endocellulase EngI {Thermoascus aurantiacus [TaxId	97.66
d1bhga3		304	beta-Glucuronidase, domain 3 {Human (Homo sapiens)	97.59
d2nt0a2		354	Glucosylceramidase, catalytic domain {Human (Homo	97.49
d1g01a_		357	Alkaline cellulase K catalytic domain {Bacillus sp	97.39
d1ta3b_		301	Xylanase A, catalytic core {Emericella nidulans (A	97.39
d1us3a2		364	Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]	97.31
d1ghsa_		306	Plant beta-glucanases {Barley (Hordeum vulgare), 1	97.07
d2c0ha1		350	endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed	96.9
d2cyga1		312	Plant beta-glucanases {Banana (Musa acuminata), 1,	96.86
d1i1wa_		303	Xylanase A, catalytic core {Thermoascus aurantiacu	96.47
d2pb1a1		394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	96.13
d1nofa1		106	Glycosyl hydrolase family 5 xylanase {Erwinia chry	96.12
d2v3ga1		273	Endoglucanase H N-terminal domain {Clostridium the	95.9
d1r85a_		371	Xylanase {Bacillus stearothermophilus, Xt6 [TaxId:	95.53
d1h4pa_		408	Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom	95.45
d1aq0a_		306	Plant beta-glucanases {Barley (Hordeum vulgare), 1	94.8
d1ur1a_		350	Xylanase {Cellvibrio mixtus [TaxId: 39650]}	94.07
d1w32a_		346	Xylanase A, catalytic core {Pseudomonas fluorescen	92.95
d2je8a5		348	Five-domain beta-mannosidase, domain 3 {Bacteroide	91.85
d2bvya2		366	Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]	91.62
d1m7xa2		106	1,4-alpha-glucan branching enzyme {Escherichia col	89.99
d1odza_		381	Mannanase A, ManA {Pseudomonas cellulosa (Cellvibr	88.11
d1tg7a5		354	Beta-galactosidase LacA, N-terminal domain {Penici	87.23
d1ea9c2		80	Maltogenic amylase {Bacillus sp., cyclomaltodextri	87.05
d1h3ga2		83	Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId	86.83
d2vzsa5		339	Exochitosanase CsxA {Amycolatopsis orientalis [Tax	86.69
d1ji1a2		83	Maltogenic amylase {Thermoactinomyces vulgaris, TV	86.21
d1yq2a5		297	beta-Galactosidase, domain 3 {Arthrobacter sp. c2-	85.72
d1wzla2		83	Maltogenic amylase {Thermoactinomyces vulgaris, TV	83.55
d1j0ha2		83	Neopullulanase {Bacillus stearothermophilus [TaxId	83.3

>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7.3e-39  Score=324.71  Aligned_cols=316  Identities=16%  Similarity=0.116  Sum_probs=221.8

Q ss_pred             ccCCceeEEEeecCCCCcCCCCCCCCCCccccCCCcCcHHHHHHHHHcCCCEEee-cccccceeeEecCCCCCccCCccc
Q 041499           28 NTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRV-GGSLQDQVLYKVGNSAKKCPHFKL  106 (512)
Q Consensus        28 ~i~~~f~g~sie~w~~~~~~y~~~~wg~~~~~~~~l~~~~l~~l~k~l~p~~lR~-GG~~~D~~~~~~~~~~~~~~p~~~  106 (512)
                      .|+|+++|+|+|  +.++|||+|++-+.++++|.+..++.|++++|.|+|++||+ |||++|.|+|+++++|...||...
T Consensus         1 ~i~~~i~g~f~E--~lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~   78 (367)
T d1qw9a2           1 EIDKRIYGSFIE--HLGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRL   78 (367)
T ss_dssp             ECCGGGGEEECC--SSTTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEE
T ss_pred             CCChhhccchhh--hccCcccCceeCCCCCCCCCcccHHHHHHHHHhcCCCEEeeCCccccCccccccccCChHHCCCcc
Confidence            389999999999  88999999996577888889866667999999999999996 999999999999999887777442


Q ss_pred             C------CCCcccccccccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHH-----
Q 041499          107 R------KDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTI-----  175 (512)
Q Consensus       107 ~------~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~-----  175 (512)
                      +      +++.||+          +||++||+++|+++++++|++.+               .+++|++|++|++     
T Consensus        79 ~~~w~~~~~~~~G~----------~Ef~~~~~~~gaep~~~vn~g~~---------------~~~~a~d~vey~n~~~~t  133 (367)
T d1qw9a2          79 DLAWKSVETNEIGL----------NEFMDWAKMVGAEVNMAVNLGTR---------------GIDAARNLVEYCNHPSGS  133 (367)
T ss_dssp             ETTTTEEECCSSCH----------HHHHHHHHHHTCEEEEEECCSSC---------------CHHHHHHHHHHHHCCSSS
T ss_pred             CCCCCCcCcCCCCH----------HHHHHHHHHhCCeEEEEEeCCCc---------------cHHHHHHHHHHHccCCCC
Confidence            2      3344665          99999999999999999999977               3789999999985     


Q ss_pred             -----------HcCceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCC-----CchhH
Q 041499          176 -----------SKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGF-----FDKQW  239 (512)
Q Consensus       176 -----------~~g~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~-----~~~~w  239 (512)
                                 .++++|+|||||||+|++...+.+++++|++.+++++++||+++|+.    ++++.+..     ....|
T Consensus       134 ~~~~~R~~~G~~~P~~v~yweIGNE~~g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i----~lia~g~~~~~~~~~~~w  209 (367)
T d1qw9a2         134 YYSDLRIAHGYKEPHKIKTWCLGNAMDGPWQIGHKTAVEYGRIACEAAKVMKWVDPTI----ELVVCGSSNRNMPTFAEW  209 (367)
T ss_dssp             HHHHHHHHTTCCSCCCCCEEEESSCCCSTTSTTCCCHHHHHHHHHHHHHHHHHHCTTC----EEEECCCSCTTSTTTTHH
T ss_pred             HHHHHHHHcCCCCCCCceEEEeccccccccccCCCCHHHHHHHHHHHHHHHhhcCCCe----eEEEEeCCCCCCcccchH
Confidence                       24689999999999998543345799999999999999999999864    67655532     12469


Q ss_pred             HHHHHhhhCCCCcceEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHH-HHHHHh--CCCCceEEeccccccCC--
Q 041499          240 FNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDIS-ETVKEF--GPWSGAWVGEAGGAFNS--  314 (512)
Q Consensus       240 ~~~~l~~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~~~~--~~~~~~wl~Etns~~~~--  314 (512)
                      ++.+++..+. .+|++|.|+|+.+...+....  +-....++...+.+..+. .+..+.  .++.++.++|+|.++..  
T Consensus       210 ~~~vl~~~~~-~iD~is~H~Y~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~wy~~~~  286 (367)
T d1qw9a2         210 EATVLDHTYD-HVDYISLHQYYGNRDNDTANY--LALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSNE  286 (367)
T ss_dssp             HHHHHHHHGG-GCSEEEEEEEECCTTCCHHHH--TTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEEEECCTTHH
T ss_pred             HHHHHhhccc-cCCcccccCCCCCCccchhhh--hhhHHHHHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccc
Confidence            9999998874 899999999986533222111  111112222222222222 222222  34567899999987631  


Q ss_pred             ------------CCCCcchHHHHHHHHHHHHHHHhhccceeee--eecccC--Ccccccc-CCCCccCCcchHHHHHHHh
Q 041499          315 ------------GGKYVSHTFADGFWFLDQLGMTSTFNHKVFC--RQALIG--GNYALLN-TTTFIPNPDYYGSLLWHRL  377 (512)
Q Consensus       315 ------------G~~~vsdtf~aalw~lD~l~~~a~~g~~v~~--~q~l~g--g~Y~l~~-~~~~~p~P~Yy~~ll~~~~  377 (512)
                                  +.-.-..++.+||..+-+|....+++-.|-+  --.++.  +.. +++ .+....+|.||++.|++++
T Consensus       287 ~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~~R~sD~V~mA~~A~lvNvl~~i-~~~~~~~~~~~~~y~v~~~~s~~  365 (367)
T d1qw9a2         287 ADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVIAPI-MTEKNGPAWKQTIYYPFMHASVY  365 (367)
T ss_dssp             HHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHHHHTTTTEEEEEEECSBSSSCSE-EECTTSCEEECTTHHHHHHHHHH
T ss_pred             ccccccccccCcccccccCcHHHHHHHHHHHHHHHHccCeeeeeehhHhhhhhcce-EecCCCCeeeCcchHHHHHHHHh
Confidence                        1001112444555545555555554422211  111221  110 223 2335678999999999988


Q ss_pred             c
Q 041499          378 M  378 (512)
Q Consensus       378 ~  378 (512)
                      +
T Consensus       366 ~  366 (367)
T d1qw9a2         366 G  366 (367)
T ss_dssp             C
T ss_pred             c
Confidence            4

PyMOL of d1qw9a2

>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]}	Back information, alignment and structure

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}	Back information, alignment and structure

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}	Back information, alignment and structure

>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ [TaxId: 1515]}	Back information, alignment and structure

>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}	Back information, alignment and structure

>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	Back information, alignment and structure

>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces halstedii [TaxId: 1944]}	Back information, alignment and structure

>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]}	Back information, alignment and structure

>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase, catalytic domain {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces lividans [TaxId: 1916]}	Back information, alignment and structure

>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]}	Back information, alignment and structure

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]}	Back information, alignment and structure

>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]}	Back information, alignment and structure

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}	Back information, alignment and structure

>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]}	Back information, alignment and structure

>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]}	Back information, alignment and structure

>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}	Back information, alignment and structure

>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]}	Back information, alignment and structure

>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]}	Back information, alignment and structure

>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]}	Back information, alignment and structure

>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}	Back information, alignment and structure

>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]}	Back information, alignment and structure

>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]}	Back information, alignment and structure

>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]}	Back information, alignment and structure

>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus aurantiacus [TaxId: 5087]}	Back information, alignment and structure

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d1nofa1 b.71.1.2 (A:31-43,A:321-413) Glycosyl hydrolase family 5 xylanase {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d2v3ga1 c.1.8.3 (A:8-280) Endoglucanase H N-terminal domain {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}	Back information, alignment and structure

>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}	Back information, alignment and structure

>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}	Back information, alignment and structure

>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]}	Back information, alignment and structure

>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]}	Back information, alignment and structure

>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]}	Back information, alignment and structure

>d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}	Back information, alignment and structure

>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}	Back information, alignment and structure

>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}	Back information, alignment and structure

>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]}	Back information, alignment and structure

>d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}	Back information, alignment and structure

>d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure