Citrus Sinensis ID: 041577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
PKPDTSVCGSKQKAATPPAGSGELPSTSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNVEDESVKANKTVVGLDQKLEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSNSIPSTSKKSTESRDGVGQEMKTKIQEESVNQKVEGGLDEHPQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEcccHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccEEEEEEEEEEccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEcccccccHHHHHccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
pkpdtsvcgskqkaatppagsgelpstssnkskeWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTskkatesrdsadqemkpnvedesvkaNKTVVgldqkleggqtlqvkpnsnpcgsdqktatppagsgelpltnsnkpkewscalcqvsaptergldehlQGRKHKAKVAGLlrdkkrcsnsipstskkstesrdgvgQEMKTKIQEESVNqkveggldehpq
Flexible Loop (DISEMBL)
pkpdtsvcgskqkaatppagsgelpstssnkskeWSCVLCQVSATterdldvhlqgkkhkakekllrdLKMCINstskkatesrdsadqemkpnvedesvkanKTVVGldqkleggqtlqvkpnsnpcgsdQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAPTErgldehlqgrkhkakvagllrdkkrcsnsipstskkstesrdgvgqemktkiqeesvnqkveggldehpq
Low Complexity Region (SEG)
PKPDTSVCGSKQKAATPPAGSGELPSTSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNVEDESVKANKTVVGLDQKLEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSNSIPSTSKKSTESRDGVGQEMKTKIQEESVNQKVEGGLDEHPQ
Disordered region (IsUnstruct)
**********************************WSCVLCQVSATTERDLDVHL****************************************************************************************************WSCALCQV***************************************************************************
Disordered Region (DISOPRED)
************************************CVLCQVSATTERDLD*******************************************************************************************************WSCALCQVSAPTERGLDEHLQGR************************************************************
Disordered Region (DISEMBL)
**********************************WSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINST*******************EDESVKANKTVVGLDQKLEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRC************************KIQE****************
Disordered Region (DISPRO)
*******************************SKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLK***************************ESVKANKTVVGLDQKLEGGQTLQVKP***************************KPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKK**********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PKPDTSVCGSKQKAATPPAGSGELPSTSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNVEDESVKANKTVVGLDQKLEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSNSIPSTSKKSTESRDGVGQEMKTKIQEESVNQKVEGGLDEHPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224091795	291	predicted protein [Populus trichocarpa]	0.755	0.615	0.374	3e-22
255577041	423	hypothetical protein RCOM_0623850 [Ricin	0.780	0.437	0.351	3e-13
357476193	508	hypothetical protein MTR_4g093510 [Medic	0.687	0.320	0.286	6e-12
255554613	989	conserved hypothetical protein [Ricinus	0.700	0.167	0.246	2e-09
357476189	357	hypothetical protein MTR_4g093280 [Medic	0.666	0.442	0.284	1e-08
356524790	386	PREDICTED: uncharacterized protein LOC10	0.594	0.365	0.283	3e-08
359494712	824	PREDICTED: uncharacterized protein LOC10	0.569	0.163	0.315	5e-08
357153688	638	PREDICTED: uncharacterized protein LOC10	0.725	0.269	0.317	1e-07
356500669	332	PREDICTED: uncharacterized protein LOC10	0.603	0.430	0.3	2e-07
357480033	556	hypothetical protein MTR_4g130690 [Medic	0.379	0.161	0.402	4e-07

>gi|224091795|ref|XP_002309354.1| predicted protein [Populus trichocarpa] gi|222855330|gb|EEE92877.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 24/203 (11%)

Query: 2   KPDTSVCGSKQKAATPPAGS-GELPSTSSNKS--KEWSCVLCQVSATTERDLDVHLQGKK 58
           KPD ++CG+K+KA TP A S GELP     K   +EWSC LCQVSAT+ER L+ HLQG++
Sbjct: 4   KPDPNLCGAKRKAVTPAAESVGELPFAGIKKKPKEEWSCALCQVSATSERGLNEHLQGRR 63

Query: 59  HKAKEKLLRDLKMCIN--------STSKKATESRDSADQEMKPNVEDESVKANKTVVGLD 110
           HKAKE  LR  KM  N         T+K A  +  +A  EM+  +EDES++ NK+    +
Sbjct: 64  HKAKEAGLRAQKMARNPNKASLPKETTKTAKVTIPTAGLEMEAKIEDESLQLNKSDNFSN 123

Query: 111 QKLEGGQTLQVKPNSNPCGSDQK----------TATPPAGSGELPLTNSNKPKEWSCALC 160
           +K+E  +    + N N    +QK           A         P     K  ++ C +C
Sbjct: 124 KKIENKEE---RGNRNDVQLEQKNQQLEDLNKSMAEAVQTKERTPEIKMKKKFKFWCEMC 180

Query: 161 QVSAPTERGLDEHLQGRKHKAKV 183
           Q+ A +E  ++ H +G+KH A++
Sbjct: 181 QIGAYSEMVMEAHKKGKKHLARL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577041|ref|XP_002529405.1| hypothetical protein RCOM_0623850 [Ricinus communis] gi|223531153|gb|EEF33001.1| hypothetical protein RCOM_0623850 [Ricinus communis]

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 105/202 (51%), Gaps = 17/202 (8%)

Query: 2   KPDTSVCGSKQKAATPPAG-SGELPSTSSNKS--KEWSCVLCQVSATTERDLDVHLQGKK 58
           KPD ++ G K+KAATPP G + ELP T   K   +EWSC LC+VSAT+E+ L+ HL+GKK
Sbjct: 173 KPDPNLFGVKRKAATPPVGGTHELPCTVLKKKPKEEWSCALCRVSATSEQGLNNHLRGKK 232

Query: 59  HKAKEKLLRDLKM----CINSTSKKATE----SRDSADQEMKPNVEDESVKANKTVVGLD 110
           HKAKE  LR  KM    C     KK+      +  +AD E++P  E ESV+ +K     D
Sbjct: 233 HKAKEARLRANKMAKTPCSRPLPKKSLRQTKLTVSTADLELEPEAEAESVQVDKNDDDTD 292

Query: 111 QKL------EGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSA 164
           +K+           LQV+ N +     +                  K  ++ C +C++ A
Sbjct: 293 KKMGNKVAENNNDKLQVQKNGSVKSKKKNVVKKVLKEERTAEFRMKKKFKFWCEMCRIGA 352

Query: 165 PTERGLDEHLQGRKHKAKVAGL 186
            +   ++ H +G+KH A++  L
Sbjct: 353 YSAVVMEAHEKGKKHLAQLQEL 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476193|ref|XP_003608382.1| hypothetical protein MTR_4g093510 [Medicago truncatula] gi|355509437|gb|AES90579.1| hypothetical protein MTR_4g093510 [Medicago truncatula]

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 15/178 (8%)

Query: 22  GELPSTSSNK--SKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKK 79
           GE+P +S+ K   +EW+C +C V+ + E+DL  HL G+KH       RD    + S  + 
Sbjct: 116 GEVPRSSTQKEVQREWTCAICLVTTSREKDLISHLNGRKH-------RDTSEALISKKQP 168

Query: 80  ATESRDSADQEMKPNVED-ESVKANKTVVGLDQKLEGGQTLQVKPNSNPCGSDQKTATPP 138
             + +  A+      +++ E  +  K  +   + ++  +    + +S    +     + P
Sbjct: 169 TRQKQKGAEATTNKTIKNGERFQTEKKNIKYLEAIDKKRNFCNQASSTIVETKGIDGSDP 228

Query: 139 AGSGELP----LTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKR 192
           AG GE+P     T    PKEW+CALC V+  ++  L+ H+ GRKH+A     L+ KK+
Sbjct: 229 AG-GEVPPSSTATQKEVPKEWTCALCLVTTSSQITLNSHINGRKHRAACEAALKAKKQ 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554613|ref|XP_002518345.1| conserved hypothetical protein [Ricinus communis] gi|223542565|gb|EEF44105.1| conserved hypothetical protein [Ricinus communis]

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 41/207 (19%)

Query: 12  QKAATPPAGSGELPSTSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKM 71
           Q+ AT     G LP  +   S+EW+C +CQV+ T E     HLQG++H+A  K+L+    
Sbjct: 453 QEMATVVEAGGNLPCKTPKNSQEWNCPICQVTVTDETSFISHLQGRRHEAASKMLKPKNQ 512

Query: 72  CIN-----------STSKKATESRDSADQEMKPNVED---------ESVKANKTVV---- 107
            +            + +K+  E+  + D   K    D         +   AN+T      
Sbjct: 513 ILRNENSLDPLETGAPNKEMPEAAVAGDLPTKSPCTDIKESTYSICQVTDANQTFFISHL 572

Query: 108 -------------GLDQKLEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKE 154
                          D   +   +L +   + P    ++ AT     G+ P       +E
Sbjct: 573 QGSQHEAASDKLKAEDWMFQSNNSLDLMETNAP----KEMATAMEVGGDFPYKEPKSIQE 628

Query: 155 WSCALCQVSAPTERGLDEHLQGRKHKA 181
           W+C +CQV+   +     HLQGR+H+A
Sbjct: 629 WNCPICQVTVTNKTNFISHLQGRRHEA 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476189|ref|XP_003608380.1| hypothetical protein MTR_4g093280 [Medicago truncatula] gi|355509435|gb|AES90577.1| hypothetical protein MTR_4g093280 [Medicago truncatula]

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 32/190 (16%)

Query: 22  GELPSTSSNKS--KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKK 79
           GE P   + K   K+W+C LC V+ T+ +DL+ HL G+KH       RD    ++  +K+
Sbjct: 122 GEFPKDCTQKEMQKKWTCALCLVTTTSNKDLNSHLTGRKH-------RDTIEALSIANKQ 174

Query: 80  AT--ESRDS-ADQEMKPNVEDESVKA--------NKTVVGLD----------QKLEGGQT 118
            T  + +D+    E+      E +KA        NK +  L+          +K      
Sbjct: 175 PTLQKQKDAEGTNEIMATDNKEILKANGERLETENKDIKDLEAIEKKEFPSTEKRTYANI 234

Query: 119 LQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKP--KEWSCALCQVSAPTERGLDEHLQG 176
           +  +  S+     + TA      GE+P +++ K   KEW+CALC V+   E+ L  HL+G
Sbjct: 235 VASQTASSAIIETKGTAESVTACGEVPQSSTQKAVQKEWTCALCLVTVTCEKTLISHLRG 294

Query: 177 RKHKAKVAGL 186
           R+H+  +  L
Sbjct: 295 RRHRETMEVL 304

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524790|ref|XP_003531011.1| PREDICTED: uncharacterized protein LOC100812073 [Glycine max]

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 25/166 (15%)

Query: 20  GSGELPSTSSNK--SKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTS 77
            SGELP +S++K   KEW+C LC V+ ++E+ L  HL G+KHKA              T 
Sbjct: 240 ASGELPESSTHKEVQKEWTCALCHVTTSSEKTLIDHLHGRKHKA--------------TC 285

Query: 78  KKATESRDSADQEMKPNVEDESVKANKTVVGLDQKLEGGQTLQVKPNSNPCGSDQKTATP 137
           +           ++K +   + +K    +  ++ K + G+ +  +   +     QK    
Sbjct: 286 ESLKAQNQPVPHKVKSDQSKDDLKQKNVIYQINSKTKSGEKVGKEAMDHKVQKLQKKLYE 345

Query: 138 PAGSGELPLTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKV 183
           PAG+     +NS    ++ C +C V  P E  L  H  G+KH AK+
Sbjct: 346 PAGT-----SNS----KFLCEVCNVYCPCEIALASHKNGKKHLAKI 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494712|ref|XP_003634825.1| PREDICTED: uncharacterized protein LOC100853636 [Vitis vinifera]

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 17/152 (11%)

Query: 33  KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMK 92
           K W+C LCQV+  +E  L+ HLQGK+H+A  + L+     I +    +      +D   K
Sbjct: 454 KVWACALCQVTTQSEATLNSHLQGKRHQATSEQLKAKNQAIKTNGSPSASMAKKSDGSTK 513

Query: 93  PNVEDESVKANKTVVGLDQK---LEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNS 149
               +E +K   T   L+ K   +    T++ KP+       QK A+           N 
Sbjct: 514 ----EEQLKC--TSNNLNSKNNGISAASTVK-KPDKTKEDKQQKCASSNG-------PNQ 559

Query: 150 NKPKEWSCALCQVSAPTERGLDEHLQGRKHKA 181
              K W+CALCQV+  +E  L+ HLQG++H+A
Sbjct: 560 KNNKNWACALCQVTTQSEATLNSHLQGKRHQA 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357153688|ref|XP_003576534.1| PREDICTED: uncharacterized protein LOC100829225 [Brachypodium distachyon]

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 14/186 (7%)

Query: 35  WSCVLCQVSATTERDLDVHLQGKKHKAK-EKLLRDLKMCINSTSKKATESRDSADQEMKP 93
           W+C +C+V  T+E+ L  H  GKKH++   KL   +K      +K A E      Q +K 
Sbjct: 192 WNCAICEVQETSEKSLQKHCAGKKHQSNIAKLESRIKAIGGQKAKTAAEPSPCTSQ-VKT 250

Query: 94  NVEDES---VKANKT-VVGLDQKLEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNS 149
           ++   S    +AN T +  L++  EG   LQ    S   GS+   A   A   E  L  S
Sbjct: 251 SLVTWSCSTCQANGTCLTDLEEHFEGSGHLQNIAASCQGGSNNGMANNVAQPQEAKLHES 310

Query: 150 NKPKEW-------SCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCS-NSIPSTS 201
             P+          C++CQV    E  L+ HL G+KH  K+  LL + KR + NS P  +
Sbjct: 311 YVPQHAQKPPSVSGCSICQVIYNHESDLETHLNGKKHLKKIQALLEESKRMAMNSDPCKN 370

Query: 202 KKSTES 207
           ++ T S
Sbjct: 371 QRKTSS 376

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500669|ref|XP_003519154.1| PREDICTED: uncharacterized protein LOC100786802 [Glycine max]

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 27/170 (15%)

Query: 2   KPDTSVCGSKQKAATPPAGSGELPSTSSNKSK---EWSCVLCQVSATTERDLDVHLQGKK 58
           KPD    G+K+KA  PP       S  S + K   EWSC LCQ++ T E+ L+ HL+GKK
Sbjct: 168 KPDVDPYGAKRKAGKPPTIDDNHHSGFSVEKKPKREWSCGLCQITTTNEKGLNNHLEGKK 227

Query: 59  HKAKEKLLRDLKMCINSTSKKATESRDSADQE---MKPNVEDESVKANKTVVGLDQKLEG 115
           HKAK   LR  K+ +++        R         ++P  ED+ V+ ++ + GLD     
Sbjct: 228 HKAKAS-LRTKKIGLDARLDGQKLQRGITSTNIGILEPRKEDQVVQNSQGLGGLD----- 281

Query: 116 GQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAP 165
                   N N   + ++T       GE       K  ++ CA  +   P
Sbjct: 282 --------NENEIATSKET-------GETNALTKRKKFKFYCAFVKFKLP 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480033|ref|XP_003610302.1| hypothetical protein MTR_4g130690 [Medicago truncatula] gi|355511357|gb|AES92499.1| hypothetical protein MTR_4g130690 [Medicago truncatula]

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 118 TLQVKPNSNPCGSDQKTATPPAGSGE-LPLTNSNKPKE-WSCALCQVSAPTERGLDEHLQ 175
            L  KP+ +  G+ +K  T  A + +   +    KPKE WSC LCQ+ A +E GL+ HL 
Sbjct: 217 ILLAKPDPDLYGAKRKALTLDAPNDDPYAIGMKKKPKEEWSCELCQIKATSESGLNAHLN 276

Query: 176 GRKHKAKVAGLLRDKKRCSNSIPSTSKKSTES 207
           G+KHKAK AG  R   +CS     T++K T++
Sbjct: 277 GKKHKAKEAGQKRKIDKCSRKSQKTAEKITDT 308

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
UNIPROTKB|I3LGA6	339	ZNF385B "Uncharacterized prote	0.869	0.607	0.260	1.3e-07
UNIPROTKB|I3LPH9	387	ZNF385B "Uncharacterized prote	0.869	0.532	0.260	1.7e-07
TAIR|locus:2047685	613	AT2G19380 [Arabidopsis thalian	0.257	0.099	0.295	2.6e-06
UNIPROTKB|E1BTY3	383	ZNF385B "Uncharacterized prote	0.852	0.527	0.265	3.5e-06
UNIPROTKB|E1BYY4	462	ZNF385B "Uncharacterized prote	0.852	0.437	0.265	4.9e-06
UNIPROTKB|E2QWE9	392	ZNF385D "Uncharacterized prote	0.805	0.487	0.220	0.00036
UNIPROTKB|F1RS58	395	ZNF385D "Uncharacterized prote	0.814	0.488	0.226	9.5e-05
UNIPROTKB|Q9H6B1	395	ZNF385D "Zinc finger protein 3	0.814	0.488	0.221	0.00062
UNIPROTKB|F1PRU5	470	ZNF385B "Uncharacterized prote	0.839	0.423	0.260	1.1e-05
UNIPROTKB|J9P8S6	491	ZNF385B "Uncharacterized prote	0.839	0.405	0.260	1.2e-05

UNIPROTKB|I3LGA6 ZNF385B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 58/223 (26%), Positives = 91/223 (40%)

Query:    26 STSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKK-ATESR 84
             S    K +  SC +CQ+   ++   + H +G KH  K K L   K      S K + ++ 
Sbjct:    16 SIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVSSKDSAKAN 75

Query:    85 DSAD-QEMKPNVEDESVKANKTVVGLDQKL---EGGQTLQVKPNSNPCGSDQKTATPPAG 140
              S     +  N  D+S +  K  V    +    EGG  L +KP + P      T+ P   
Sbjct:    76 PSCSITPITGNNSDKSEEKGKLKVNSSSQASSSEGGSFL-LKPGTTPLAPGAATS-PSKS 133

Query:   141 SGELPLTNSNKPKEWS-----CALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSN 195
             +   P T S   +E +     C+LC+V+  +   L+ H  G KHK  V          S 
Sbjct:   134 TNGAPSTISESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSY 193

Query:   196 SIPSTSKKSTESRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
               P +  K      G G + KT   +I +  VN +++  L +H
Sbjct:   194 PRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQ--LKQH 234

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|I3LPH9 ZNF385B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 58/223 (26%), Positives = 91/223 (40%)

Query:    26 STSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKK-ATESR 84
             S    K +  SC +CQ+   ++   + H +G KH  K K L   K      S K + ++ 
Sbjct:    64 SIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVSSKDSAKAN 123

Query:    85 DSAD-QEMKPNVEDESVKANKTVVGLDQKL---EGGQTLQVKPNSNPCGSDQKTATPPAG 140
              S     +  N  D+S +  K  V    +    EGG  L +KP + P      T+ P   
Sbjct:   124 PSCSITPITGNNSDKSEEKGKLKVNSSSQASSSEGGSFL-LKPGTTPLAPGAATS-PSKS 181

Query:   141 SGELPLTNSNKPKEWS-----CALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSN 195
             +   P T S   +E +     C+LC+V+  +   L+ H  G KHK  V          S 
Sbjct:   182 TNGAPSTISESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSY 241

Query:   196 SIPSTSKKSTESRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
               P +  K      G G + KT   +I +  VN +++  L +H
Sbjct:   242 PRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQ--LKQH 282

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

TAIR|locus:2047685 AT2G19380 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query:    35 WSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPN 94
             W C LC ++AT+E+ L  H  GKKH+ K +     +    ST     + +D + Q+++ +
Sbjct:   154 WFCSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVDKKDYSKQQIEVD 213

Query:    95 V 95
             +
Sbjct:   214 I 214

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BTY3 ZNF385B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 60/226 (26%), Positives = 93/226 (41%)

Query:    26 STSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCIN-STSKKATESR 84
             S    K +  SC +CQ+   ++   + H +G KH  K K L   K      +SK +T++ 
Sbjct:    63 SIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKVGSSKDSTKAN 122

Query:    85 DSADQEMKPNVEDES-----VKANKTVVGLDQKLEGGQTLQ------VKPNSNPCGSDQK 133
              S    +  N+ D+S     VK+N T        E G  L       V P + P  S   
Sbjct:   123 PSCSTPVTANISDKSEDKGKVKSNGT--SQHSSTEVGAFLPKTGVAAVAPVT-PAVSSNS 179

Query:   134 TATPPAGSGELPLTNSNKPKEWS-CALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKR 192
             T   P+ + E   +   K K+   C+LC+V+  +   L+ H  G KHK  V         
Sbjct:   180 TNGAPSTTSE---SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPI 236

Query:   193 CSNSIPSTSKKSTESRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
              S   P +  K      G G + KT   +I +  VN +++  L +H
Sbjct:   237 KSYPRPGSRLKVQNGSKGSGLQNKTFHCEICDVHVNSEIQ--LKQH 280

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BYY4 ZNF385B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 60/226 (26%), Positives = 93/226 (41%)

Query:    26 STSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCIN-STSKKATESR 84
             S    K +  SC +CQ+   ++   + H +G KH  K K L   K      +SK +T++ 
Sbjct:   142 SIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKVGSSKDSTKAN 201

Query:    85 DSADQEMKPNVEDES-----VKANKTVVGLDQKLEGGQTLQ------VKPNSNPCGSDQK 133
              S    +  N+ D+S     VK+N T        E G  L       V P + P  S   
Sbjct:   202 PSCSTPVTANISDKSEDKGKVKSNGT--SQHSSTEVGAFLPKTGVAAVAPVT-PAVSSNS 258

Query:   134 TATPPAGSGELPLTNSNKPKEWS-CALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKR 192
             T   P+ + E   +   K K+   C+LC+V+  +   L+ H  G KHK  V         
Sbjct:   259 TNGAPSTTSE---SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPI 315

Query:   193 CSNSIPSTSKKSTESRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
              S   P +  K      G G + KT   +I +  VN +++  L +H
Sbjct:   316 KSYPRPGSRLKVQNGSKGSGLQNKTFHCEICDVHVNSEIQ--LKQH 359

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2QWE9 ZNF385D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
 Identities = 47/213 (22%), Positives = 87/213 (40%)

Query:    36 SCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNV 95
             SC +CQ+   ++     H +G KH  K K L  +K       +K+  ++DSA        
Sbjct:    79 SCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMK-----NKQKSVTAKDSAKTTFTSIT 133

Query:    96 EDE-SVKANKTVVGLDQKLEGGQTLQVKPNS----NPCGSDQKTATPPAGSGELPLTNSN 150
              +  +  ++KT            T++++ +S          +K+ T   G+   P T + 
Sbjct:   134 TNTINTSSDKTDSTTGTPAISTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCPSTETE 193

Query:   151 KPKEWS---CALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSNSIP--STSKKST 205
             + K      C+LC+V+  +   L+ H  G KHK  +    R+      + P      K  
Sbjct:   194 EEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEA--RNGSGTIKAFPRAGVKGKGP 251

Query:   206 ESRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
              ++   G + KT   +I +  VN + +  L +H
Sbjct:   252 VNKGNTGLQNKTFHCEICDVHVNSETQ--LKQH 282

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RS58 ZNF385D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 119 (46.9 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 48/212 (22%), Positives = 86/212 (40%)

Query:    36 SCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNV 95
             SC +CQ+   ++     H +G KH  K K L  +K    S + K  +S  +    +  N 
Sbjct:    81 SCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAK--DSAKTTFTSITTNT 138

Query:    96 EDESVKANKTVVGLDQKLEGGQTLQVKPNS----NPCGSDQKTATPPAGSGELPLTNSNK 151
              + S     T  G    +    T++++ +S          +K+ T   G+   P T + +
Sbjct:   139 INTSSDKTDTTTGTPA-ISTTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCPSTETEE 197

Query:   152 PKEWS---CALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSNSIP--STSKKSTE 206
              K      C+LC+V+  +   L+ H  G KHK  +    R+      + P      K   
Sbjct:   198 EKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEA--RNGSGTIKAFPRAGVKGKGPV 255

Query:   207 SRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
             ++   G + KT   +I +  VN + +  L +H
Sbjct:   256 NKGNTGLQNKTFHCEICDVHVNSETQ--LKQH 285

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9H6B1 ZNF385D "Zinc finger protein 385D" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
 Identities = 47/212 (22%), Positives = 85/212 (40%)

Query:    36 SCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNV 95
             SC +CQ+   ++     H +G KH  K K L  +K    S + K  +S  +    +  N 
Sbjct:    81 SCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAK--DSAKTTFTSITTNT 138

Query:    96 EDESVKANKTVVGLDQKLEGGQTLQVKPNS----NPCGSDQKTATPPAGSGELPLTNSNK 151
              + S        G    +    T++++ +S          +K+ T   G+   P T + +
Sbjct:   139 INTSSDKTDGTAGTPA-ISTTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCPSTETEE 197

Query:   152 PKEWS---CALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRCSNSIP--STSKKSTE 206
              K      C+LC+V+  +   L+ H  G KHK  +    R+      + P      K   
Sbjct:   198 EKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEA--RNGSGTIKAFPRAGVKGKGPV 255

Query:   207 SRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
             ++   G + KT   +I +  VN + +  L +H
Sbjct:   256 NKGNTGLQNKTFHCEICDVHVNSETQ--LKQH 285

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PRU5 ZNF385B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 60/230 (26%), Positives = 95/230 (41%)

Query:    26 STSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRD 85
             S    K +  SC +CQ+   ++   + H +G KH  K K L   K        K   S+D
Sbjct:   148 SIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATK-----NKPKMVSSKD 202

Query:    86 SADQEMKPNVEDESVKANKTVVGLDQ-KLEGGQTLQVKPNSNPCGSD--QKTATP-PAGS 141
             SA  +  P+     +  N +    D+ KL+    +Q  P+S+  GS   +   TP P G+
Sbjct:   203 SA--KANPSCSITPITGNSSDKSEDKGKLKANSCIQ--PSSSEGGSFLLKSGTTPLPPGA 258

Query:   142 GELPLTNSN------------KPKEWS-CALCQVSAPTERGLDEHLQGRKHKAKVAGLLR 188
                P  ++N            K K+   C+LC+V+  +   L+ H  G KHK  V     
Sbjct:   259 ATSPSKSTNGAPGTVSESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNG 318

Query:   189 DKKRCSNSIPSTSKKSTESRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
                  S   P +  K      G G + KT   +I +  VN +++  L +H
Sbjct:   319 AGPIKSYPRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQ--LKQH 366

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P8S6 ZNF385B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 60/230 (26%), Positives = 95/230 (41%)

Query:    26 STSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRD 85
             S    K +  SC +CQ+   ++   + H +G KH  K K L   K        K   S+D
Sbjct:   169 SIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATK-----NKPKMVSSKD 223

Query:    86 SADQEMKPNVEDESVKANKTVVGLDQ-KLEGGQTLQVKPNSNPCGSD--QKTATP-PAGS 141
             SA  +  P+     +  N +    D+ KL+    +Q  P+S+  GS   +   TP P G+
Sbjct:   224 SA--KANPSCSITPITGNSSDKSEDKGKLKANSCIQ--PSSSEGGSFLLKSGTTPLPPGA 279

Query:   142 GELPLTNSN------------KPKEWS-CALCQVSAPTERGLDEHLQGRKHKAKVAGLLR 188
                P  ++N            K K+   C+LC+V+  +   L+ H  G KHK  V     
Sbjct:   280 ATSPSKSTNGAPGTVSESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNG 339

Query:   189 DKKRCSNSIPSTSKKSTESRDGVGQEMKT---KIQEESVNQKVEGGLDEH 235
                  S   P +  K      G G + KT   +I +  VN +++  L +H
Sbjct:   340 AGPIKSYPRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQ--LKQH 387

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI001245 hypothetical protein (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-05
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	2e-04
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	3e-04
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.003

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 35 WSCVLCQVSATTERDLDVHLQGKKH 59
          + C LC V+ T+E  L  HL+GKKH
Sbjct: 1  FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 35 WSCVLCQVSATTERDLDVHLQGKKHKAKEKLL 66
          + C LC V+ T E  ++ HL+GKKHK   K  
Sbjct: 4  FYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 155 WSCALCQVSAPTERGLDEHLQGRKH 179
           + C LC V+  +E  L  HL+G+KH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 37 CVLCQVSATTERDLDVHLQGKKHK 60
          CV C     +E  L+ HL+ KKHK
Sbjct: 4  CVACDKYFKSENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.64
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.56
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.56
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.44
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.28
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.09
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	97.68
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.36
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.28
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.14
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.03
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	96.46
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.24
PLN02748	468	tRNA dimethylallyltransferase	96.24
PF14968	336	CCDC84: Coiled coil protein 84	95.92
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	95.76
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.62
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	95.44
KOG3032	264	consensus Uncharacterized conserved protein [Funct	95.4
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	95.09
PLN02748	468	tRNA dimethylallyltransferase	95.01
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	95.0
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.98
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	94.97
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	94.77
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	94.6
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	94.48
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.23
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	93.78
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.65
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.44
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	92.96
KOG4722	672	consensus Zn-finger protein [General function pred	92.89
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	92.11
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.01
smart00355	26	ZnF_C2H2 zinc finger.	91.17
KOG3032	264	consensus Uncharacterized conserved protein [Funct	91.07
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	90.89
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	90.53
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	89.93
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	89.08
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	88.77
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	88.76
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	88.1
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	88.09
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	87.28
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	86.69
smart00355	26	ZnF_C2H2 zinc finger.	86.44
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	86.03
KOG4722	672	consensus Zn-finger protein [General function pred	85.53
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	84.81
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	84.18
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	83.96
KOG1146	1406	consensus Homeobox protein [General function predi	82.37
KOG1146	1406	consensus Homeobox protein [General function predi	81.59
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	80.89

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.64  E-value=2e-08  Score=58.57  Aligned_cols=25  Identities=36%  Similarity=0.820  Sum_probs=24.5

Q ss_pred             eeccccccccCCHHHHHHHhcChhH
Q 041577          155 WSCALCQVSAPTERGLDEHLQGRKH  179 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~GkkH  179 (237)
                      |+|.+|++.|+++.+|.+|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.56  E-value=5.8e-08  Score=60.74  Aligned_cols=32  Identities=38%  Similarity=0.755  Sum_probs=30.3

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHHHHHh
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKAKVAG  185 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~  185 (237)
                      .|+|++|++.|++...+..|++|++|+.+++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.56  E-value=4.2e-08  Score=57.18  Aligned_cols=25  Identities=40%  Similarity=0.765  Sum_probs=24.5

Q ss_pred             eeccccccccCCHHHHHHHhcChhh
Q 041577           35 WSCVLCQVSATTERDLDVHLQGKKH   59 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~GkKH   59 (237)
                      |+|+||+++|+++.+|+.|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.44  E-value=1.5e-07  Score=58.85  Aligned_cols=32  Identities=44%  Similarity=0.746  Sum_probs=29.9

Q ss_pred             ceeccccccccCCHHHHHHHhcChhhHHHHHH
Q 041577           34 EWSCVLCQVSATTERDLDVHLQGKKHKAKEKL   65 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~   65 (237)
                      .++|++|++.|+++..+..|+.|++|+.+++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58899999999999999999999999999874

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.28  E-value=3.9e-07  Score=54.38  Aligned_cols=27  Identities=30%  Similarity=0.700  Sum_probs=25.3

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHH
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHK  180 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~  180 (237)
                      .|+|.+|++.|+++.+|+.|++|++|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            489999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.09  E-value=1.5e-06  Score=51.84  Aligned_cols=26  Identities=35%  Similarity=0.676  Sum_probs=25.3

Q ss_pred             eeccccccccCCHHHHHHHhcChhhH
Q 041577           35 WSCVLCQVSATTERDLDVHLQGKKHK   60 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~GkKHk   60 (237)
                      +||.+|++.|+++.+|+.|+.|++|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            79999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=97.68  E-value=7.6e-05  Score=74.69  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=31.3

Q ss_pred             CCCCceeccccccccCCHHHHHHHhcChhHHHHHH
Q 041577          150 NKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVA  184 (237)
Q Consensus       150 k~~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~  184 (237)
                      ++...|.|.+|+..|+....-++||+|+||+-..+
T Consensus       355 gK~~~f~cKlcdckf~d~nak~mhl~grRhrLQYk  389 (816)
T KOG3792|consen  355 GKLLRFHCKLCDCKFNDPNAKEMHLKGRRHRLQYK  389 (816)
T ss_pred             cchHhhhhhhhcCCCCCcchHHhhhhcccccceec
Confidence            34558999999999999999999999999987766

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.36  E-value=0.0002  Score=46.45  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=20.6

Q ss_pred             ceecccccccc--CCHHHHHHHhcChhHHHHHHh
Q 041577          154 EWSCALCQVSA--PTERGLDEHLQGRKHKAKVAG  185 (237)
Q Consensus       154 ~~~C~lC~v~~--~s~~~l~~Hl~GkkH~~~~~~  185 (237)
                      .+||+.|++.+  ++...-..|..|.+|+.+++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            58999999999  455677999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.28  E-value=0.00019  Score=60.92  Aligned_cols=42  Identities=21%  Similarity=0.407  Sum_probs=36.2

Q ss_pred             CCCCCCCCCceeccccccccCCHHHHHHHhcChhhHHHHHHH
Q 041577           25 PSTSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLL   66 (237)
Q Consensus        25 ~~~~~kk~~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l   66 (237)
                      +..+..+.--+||+||+..+--..+|.+|++|++|+.++..+
T Consensus        66 k~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   66 KSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            344556667899999999999999999999999999998753

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.14  E-value=0.00031  Score=59.58  Aligned_cols=36  Identities=17%  Similarity=0.480  Sum_probs=32.7

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhHHHHHHhhh
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLL  187 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~  187 (237)
                      ...|||.||+..|-...+|..||+|++|+.++..+.
T Consensus        73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm  108 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM  108 (193)
T ss_pred             cCceeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence            458999999999999999999999999999987653

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.03  E-value=0.0007  Score=43.86  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             ceecccccccc--CCHHHHHHHhcChhhHHHHHH
Q 041577           34 EWSCVLCQVSA--TTERDLDVHLQGKKHKAKEKL   65 (237)
Q Consensus        34 ~~~C~vC~Vs~--tSe~~l~~Hl~GkKHk~k~~~   65 (237)
                      .+||+.|++.+  ++...-..|..|.+|+.+++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            47899999999  455666899999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=96.46  E-value=0.0034  Score=59.21  Aligned_cols=99  Identities=16%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             ceeccccccccCCHHHHHHHhcChhhHHHHHHHhhhhhccCCCCcccccccccccccCCCCcchhhhhcccccccccccc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNVEDESVKANKTVVGLDQKL  113 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~~k~~~~p~s~k~~~~~~~~~~e~~~~~~~~~~q~~~~~~~~~~~~  113 (237)
                      .++|.-|+|.|.+...-..||.--+|+=+|+..-++          +.+++            .+-++         ..+
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~----------lPPIt------------aE~F~---------~k~   51 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVAS----------LPPIT------------AEEFN---------EKV   51 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhc----------CCCcC------------HHHHh---------HHH
Confidence            478999999999999999999999999999864432          11111            11100         000


Q ss_pred             cCCcccccCCCCCCCCCCCccCCCCCCCCCCCccCCCCCCceeccccccccCCHHHHHHHhcChhHHHHHHhhh
Q 041577          114 EGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLL  187 (237)
Q Consensus       114 ~g~~~~Q~kp~~n~~g~~~k~~~~~~~~ge~~~~~~k~~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~  187 (237)
                            +.             ...     +...........++|.+|+..+-|...+..||..++|..++....
T Consensus        52 ------~s-------------~~~-----~~~~~~e~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~  101 (390)
T KOG2785|consen   52 ------LS-------------DDS-----EKEENLEEAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQ  101 (390)
T ss_pred             ------hh-------------hhh-----hhhhhhhhcccceehHHhhccccChhhHHHHHHHhhcchhhhhhh
Confidence                  00             000     000001123458999999999999999999999999999998864

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.24  E-value=0.0015  Score=48.57  Aligned_cols=32  Identities=22%  Similarity=0.616  Sum_probs=26.6

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHHHHHh
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKAKVAG  185 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~  185 (237)
                      .|.|.+|+..|.+...|..||+.+.|......
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~~   81 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNSE   81 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S--
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCcccc
Confidence            69999999999999999999999999887543

>PLN02748 tRNA dimethylallyltransferase

Probab=96.24  E-value=0.0036  Score=60.94  Aligned_cols=37  Identities=24%  Similarity=0.512  Sum_probs=33.3

Q ss_pred             Cceecccccc-ccCCHHHHHHHhcChhHHHHHHhhhhc
Q 041577          153 KEWSCALCQV-SAPTERGLDEHLQGRKHKAKVAGLLRD  189 (237)
Q Consensus       153 ~~~~C~lC~v-~~~s~~~l~~Hl~GkkH~~~~~~~~~~  189 (237)
                      ..+.|++|+. .++++.+++.|++|++|+++++.++..
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            4678999998 899999999999999999999988643

>PF14968 CCDC84: Coiled coil protein 84

Probab=95.92  E-value=0.0041  Score=58.11  Aligned_cols=38  Identities=21%  Similarity=0.459  Sum_probs=31.1

Q ss_pred             CCceeccccccccCCH------HHHHHHhcChhHHHHHHhhhhc
Q 041577          152 PKEWSCALCQVSAPTE------RGLDEHLQGRKHKAKVAGLLRD  189 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~------~~l~~Hl~GkkH~~~~~~~~~~  189 (237)
                      ...|||-.|...+.--      ..+..||.+..|++++++.-.+
T Consensus        56 ~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~   99 (336)
T PF14968_consen   56 RNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWWK   99 (336)
T ss_pred             cceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHHHHH
Confidence            4589999998777644      4789999999999999987443

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.0064  Score=58.79  Aligned_cols=36  Identities=33%  Similarity=0.576  Sum_probs=33.7

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHHHHHhhhhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRD  189 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~  189 (237)
                      .+||-+|+.+|-|+.+|..|.+.++|+.+|+.|+..
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999999999998744

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.62  E-value=0.0075  Score=48.61  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=34.1

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhhhh
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLR  188 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~  188 (237)
                      ..|||-.|-..|-++..|..|++++.|+++|+.|+.
T Consensus        56 GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   56 GQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             ceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            489999999999999999999999999999999974

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=95.44  E-value=0.0084  Score=41.05  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhHHHHHH
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQGRKHKAKVA  184 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~  184 (237)
                      ++.-||+.|.+.|.   .|+.|+.+++|+.-..
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            35678999999998   7999999999998654

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.031  Score=49.75  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=33.7

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhHHHHHHhhhhc
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRD  189 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~  189 (237)
                      ...+.|-||++-.- +..+..|.+|++|+..+..|+-.
T Consensus        33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~   69 (264)
T KOG3032|consen   33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSR   69 (264)
T ss_pred             CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhh
Confidence            34789999999999 99999999999999999999843

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=95.09  E-value=0.015  Score=50.38  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=34.9

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhHHHHHHhhhhccCC
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKR  192 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~~~k  192 (237)
                      ...|-|.||.-.-+++..|..|.+|+||+.+|..-.+...+
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~e~k   91 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAK   91 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHHHhh
Confidence            34799999999999999999999999999998776544433

>PLN02748 tRNA dimethylallyltransferase

Probab=95.01  E-value=0.019  Score=55.95  Aligned_cols=36  Identities=19%  Similarity=0.489  Sum_probs=32.3

Q ss_pred             Cceecccccc-ccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQV-SATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~V-s~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ...+|++|+. ++.++.+-+.|+.||+|+++++.++.
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            4557999998 89999999999999999999987764

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.00  E-value=0.02  Score=39.21  Aligned_cols=29  Identities=34%  Similarity=0.567  Sum_probs=25.1

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhHHHHH
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQGRKHKAKV  183 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~  183 (237)
                      ++.-||+.|.+.+.   .|+.|+.+.+|+.-.
T Consensus         3 ~k~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    3 KKPGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CCCccCccccchhh---hHHHHhCCHHHHHHH
Confidence            34668999999998   599999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.98  E-value=0.019  Score=31.80  Aligned_cols=21  Identities=24%  Similarity=0.692  Sum_probs=17.7

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577          155 WSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      |.|.+|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            689999999999999999985

...

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=94.97  E-value=0.014  Score=40.03  Aligned_cols=29  Identities=31%  Similarity=0.482  Sum_probs=24.8

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhhHHHH
Q 041577           32 SKEWSCVLCQVSATTERDLDVHLQGKKHKAKE   63 (237)
Q Consensus        32 ~~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~   63 (237)
                      ++..||++|.+.|.   +|..|+.+++|++=.
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA   31 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFA   31 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHH
Confidence            34679999999996   789999999999753

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=94.77  E-value=0.02  Score=46.24  Aligned_cols=36  Identities=28%  Similarity=0.525  Sum_probs=34.0

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ..+||-.|.--|-++..|..|+.++.|+++++.|+.
T Consensus        56 GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   56 GQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             ceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            578999999999999999999999999999999874

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.60  E-value=0.028  Score=38.47  Aligned_cols=29  Identities=34%  Similarity=0.559  Sum_probs=25.0

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhhHHHH
Q 041577           32 SKEWSCVLCQVSATTERDLDVHLQGKKHKAKE   63 (237)
Q Consensus        32 ~~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~   63 (237)
                      ++..||+.|.+.|.   +|..|+.+.+|+.=.
T Consensus         3 ~k~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    3 KKPGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CCCccCccccchhh---hHHHHhCCHHHHHHH
Confidence            45679999999997   589999999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.48  E-value=0.028  Score=31.48  Aligned_cols=22  Identities=23%  Similarity=0.682  Sum_probs=20.1

Q ss_pred             eeccccccccCCHHHHHHHhcC
Q 041577          155 WSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      |.|.+|+..|.+...|..|++-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6799999999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.031  Score=54.18  Aligned_cols=35  Identities=37%  Similarity=0.562  Sum_probs=32.8

Q ss_pred             ceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           34 EWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      .+||-||+-+|-|+.++..|.+.++|+.+|+.|+.
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999999998863

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=93.78  E-value=0.036  Score=46.84  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             ceeccccccccC--CHHHHHHHhcChhhHHHHHHH
Q 041577           34 EWSCVLCQVSAT--TERDLDVHLQGKKHKAKEKLL   66 (237)
Q Consensus        34 ~~~C~vC~Vs~t--Se~~l~~Hl~GkKHk~k~~~l   66 (237)
                      .+||+.|++-.|  |.++-..|+.|+||+.+++..
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~Y   37 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDY   37 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHH
Confidence            579999996655  889999999999999998753

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.65  E-value=0.058  Score=31.36  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             ceeccccccccCCHHHHHHHhcC
Q 041577          154 EWSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      .+.|.+|+..|.+...|..|++-
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            37899999999999999999953

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.44  E-value=0.062  Score=29.58  Aligned_cols=21  Identities=24%  Similarity=0.675  Sum_probs=17.4

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577           35 WSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      |.|++|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            679999999999999999974

...

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=92.96  E-value=0.068  Score=45.17  Aligned_cols=32  Identities=28%  Similarity=0.495  Sum_probs=27.1

Q ss_pred             ceeccccccccC--CHHHHHHHhcChhHHHHHHh
Q 041577          154 EWSCALCQVSAP--TERGLDEHLQGRKHKAKVAG  185 (237)
Q Consensus       154 ~~~C~lC~v~~~--s~~~l~~Hl~GkkH~~~~~~  185 (237)
                      .|||+.|++..|  |.+.-..|+.|++|+++++.
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~   36 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKD   36 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHH
Confidence            589999996554  66789999999999999764

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=92.89  E-value=0.061  Score=51.85  Aligned_cols=34  Identities=38%  Similarity=0.645  Sum_probs=31.5

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHHHHHhhh
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLL  187 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~  187 (237)
                      .-.|.+|||...|+.-|-+|..|++|+..|..+-
T Consensus       493 kkqcslcnvlissevylfshvkgrkhqqal~e~~  526 (672)
T KOG4722|consen  493 KKQCSLCNVLISSEVYLFSHVKGRKHQQALNELL  526 (672)
T ss_pred             hhccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence            5589999999999999999999999999998864

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=92.11  E-value=0.12  Score=44.93  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ..+-|.+|.-.-+++..+..|.+|+||+.+++...+
T Consensus        52 G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa   87 (222)
T KOG0227|consen   52 GKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA   87 (222)
T ss_pred             cceeehhhhhhhcchhhhhhhhccchhhHHHHHHHH
Confidence            577899999999999999999999999999875543

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.01  E-value=0.13  Score=29.78  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=19.5

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577           35 WSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      +.|++|+.+|.+...|..|..
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            579999999999999999984

>smart00355 ZnF_C2H2 zinc finger

Probab=91.17  E-value=0.17  Score=27.97  Aligned_cols=21  Identities=24%  Similarity=0.623  Sum_probs=19.4

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577          155 WSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|..|...|++...|..|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999987

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.07  E-value=0.24  Score=44.27  Aligned_cols=41  Identities=29%  Similarity=0.494  Sum_probs=35.8

Q ss_pred             CCCCCCCceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           27 TSSNKSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        27 ~~~kk~~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ........+.|-||+|-.- +.....|..|++|+.++..|+.
T Consensus        28 akyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   28 AKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             hccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            3344457899999999998 9999999999999999999984

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.89  E-value=0.17  Score=28.15  Aligned_cols=21  Identities=24%  Similarity=0.705  Sum_probs=19.3

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577           35 WSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      +.|.+|+..|.+...|..|..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            579999999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=90.53  E-value=0.16  Score=40.26  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=34.5

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhhhhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRD  189 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~  189 (237)
                      ..+||--|...|-++..|..|..|+-|+++++.|++-
T Consensus        54 GqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          54 GQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             ceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            4799999999999999999999999999999999754

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=89.93  E-value=0.33  Score=38.56  Aligned_cols=36  Identities=36%  Similarity=0.541  Sum_probs=33.9

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ..+||=-|.--|-++..|..|..|+-|+++++.|+.
T Consensus        54 GqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          54 GQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             ceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            678999999999999999999999999999998875

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=89.08  E-value=0.24  Score=45.89  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=28.0

Q ss_pred             ceeccccccccC-CHHHHHHHhcChhhHHHHHHH
Q 041577           34 EWSCVLCQVSAT-TERDLDVHLQGKKHKAKEKLL   66 (237)
Q Consensus        34 ~~~C~vC~Vs~t-Se~~l~~Hl~GkKHk~k~~~l   66 (237)
                      ..||++|+|.+- .......|-.|++|+.+|+..
T Consensus        10 kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen   10 KKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             chhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            457999999884 667778999999999999764

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=88.77  E-value=0.21  Score=47.20  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=29.7

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHh
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAG  185 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~  185 (237)
                      ..+||..|+..|.-...++.|+.|++|.+..+.
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~  269 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQG  269 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhh
Confidence            478999999999999999999999999987654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=88.76  E-value=0.21  Score=36.77  Aligned_cols=32  Identities=22%  Similarity=0.584  Sum_probs=26.7

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHH
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEK   64 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~   64 (237)
                      ..|.|.+|+..|.+...|..|+....|.....
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            46999999999999999999999999987643

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=88.10  E-value=0.25  Score=45.76  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=27.5

Q ss_pred             CceeccccccccC-CHHHHHHHhcChhHHHHHHh
Q 041577          153 KEWSCALCQVSAP-TERGLDEHLQGRKHKAKVAG  185 (237)
Q Consensus       153 ~~~~C~lC~v~~~-s~~~l~~Hl~GkkH~~~~~~  185 (237)
                      ...||++|+|.+- ....-..|-+|+||+.+|++
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~K   42 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAK   42 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHH
Confidence            3678999999885 45688899999999999854

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=88.09  E-value=0.47  Score=41.08  Aligned_cols=35  Identities=29%  Similarity=0.530  Sum_probs=31.6

Q ss_pred             CCceeccccccccCCHHHHHHHhcChhHHHHHHhh
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGL  186 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~  186 (237)
                      ...|-|.||+-.--++..+..|+.|+||..++..-
T Consensus        51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            35899999999999999999999999999987654

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=87.28  E-value=0.52  Score=40.81  Aligned_cols=36  Identities=31%  Similarity=0.544  Sum_probs=32.6

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ..+.|-+|+-.--++..+..|..|+||+.++....+
T Consensus        52 Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~   87 (222)
T COG5246          52 GKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSE   87 (222)
T ss_pred             CcEEeeeeccccccHHHHHHhhccchhhhhHHHHHH
Confidence            678999999999999999999999999999876644

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=86.69  E-value=0.6  Score=39.56  Aligned_cols=32  Identities=22%  Similarity=0.651  Sum_probs=29.5

Q ss_pred             eeccccccccCCHHHHHHHhcChhHHHHHHhh
Q 041577          155 WSCALCQVSAPTERGLDEHLQGRKHKAKVAGL  186 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~  186 (237)
                      |.|.+|..+.--+..|+.||.++=|+..++-+
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i   32 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYI   32 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHH
Confidence            67999999999999999999999999887665

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>smart00355 ZnF_C2H2 zinc finger

Probab=86.44  E-value=0.52  Score=25.89  Aligned_cols=21  Identities=19%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577           35 WSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      +.|.+|..+|++...|..|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            359999999999999999986

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=86.03  E-value=0.39  Score=45.42  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=30.4

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHH
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLL   66 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l   66 (237)
                      ...||.+|+--|....+|+.|+.|+.|.+.....
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~  270 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGK  270 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhh
Confidence            4679999999999999999999999999887644

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=85.53  E-value=0.51  Score=45.69  Aligned_cols=35  Identities=31%  Similarity=0.513  Sum_probs=30.6

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLR   67 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~   67 (237)
                      ..--|++|+|-..|+.-|-+|..|+||+..+..+-
T Consensus       492 rkkqcslcnvlissevylfshvkgrkhqqal~e~~  526 (672)
T KOG4722|consen  492 RKKQCSLCNVLISSEVYLFSHVKGRKHQQALNELL  526 (672)
T ss_pred             hhhccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence            34469999999999999999999999998887653

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=84.81  E-value=0.28  Score=42.71  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=0.0

Q ss_pred             Cceecccc-ccccCCHHHHHHHhcChhHHHHHHhhhhccC
Q 041577          153 KEWSCALC-QVSAPTERGLDEHLQGRKHKAKVAGLLRDKK  191 (237)
Q Consensus       153 ~~~~C~lC-~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~~~  191 (237)
                      ..|.|+|| |.++-....++.|++..||.--|+-|.-..-
T Consensus       100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~nt  139 (196)
T PF11931_consen  100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLGIPNT  139 (196)
T ss_dssp             ----------------------------------------
T ss_pred             CeeeeEeCCCcceecHHHHHHhcChhHHHccChhcCCCCc
Confidence            47899999 7777799999999999999999999876643

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=84.18  E-value=0.21  Score=45.58  Aligned_cols=39  Identities=21%  Similarity=0.474  Sum_probs=34.8

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhhhhccC
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKK  191 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~~~  191 (237)
                      -.|||-+|+..|+.+..|..|+...-|++.+........
T Consensus        24 lRwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~Np~   62 (309)
T KOG2837|consen   24 LRWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFALNPG   62 (309)
T ss_pred             HHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhCcc
Confidence            489999999999999999999999999999887765443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=83.96  E-value=0.87  Score=25.66  Aligned_cols=20  Identities=30%  Similarity=0.762  Sum_probs=16.1

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577          155 WSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      |.|..|+-.++ +..|..|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHH
Confidence            57999999998 999999986

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=82.37  E-value=1.8  Score=46.93  Aligned_cols=41  Identities=24%  Similarity=0.423  Sum_probs=36.7

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhhhhccCCC
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKKRC  193 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~~~k~  193 (237)
                      ..+.|..|++.++....|-.||+.-.|+.+++...+.....
T Consensus       517 ~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~  557 (1406)
T KOG1146|consen  517 KPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQ  557 (1406)
T ss_pred             CcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccc
Confidence            47899999999999999999999999999998887776643

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=81.59  E-value=0.79  Score=49.60  Aligned_cols=33  Identities=24%  Similarity=0.495  Sum_probs=28.0

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHHHHHhh
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKAKVAGL  186 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~  186 (237)
                      .++|.+|+|.+.++..|+.|++..-|+.+..--
T Consensus      1328 ~~~c~~c~~~~~~~~alqihm~~~~~~~kt~~~ 1360 (1406)
T KOG1146|consen 1328 TYHCLACEVLLSGREALQIHMRSSAHRRKTAPP 1360 (1406)
T ss_pred             cccchHHHhhcchhHHHHHHHHHhhhcccCCCC
Confidence            445999999999999999999999888765443

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=80.89  E-value=1.5  Score=37.17  Aligned_cols=33  Identities=27%  Similarity=0.683  Sum_probs=30.7

Q ss_pred             eeccccccccCCHHHHHHHhcChhhHHHHHHHh
Q 041577           35 WSCVLCQVSATTERDLDVHLQGKKHKAKEKLLR   67 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~   67 (237)
                      ++|++|+.+.--+..++.||.++=|+..++.+.
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~   33 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQ   33 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHHH
Confidence            479999999999999999999999999998874

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.69
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.32
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.55
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.22
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.1
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.71
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.55
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.21
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.17
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	95.08
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	94.92
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	94.91
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	94.75
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	94.61
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	94.44
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	94.42
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	94.42
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	94.31
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	94.29
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	93.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	93.58
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	93.54
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	93.49
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	93.31
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	93.25
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	92.99
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	92.9
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	92.61
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	92.59
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	92.58
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.46
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	92.24
1ard_A	29	Yeast transcription factor ADR1; transcription reg	92.22
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	92.14
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	92.14
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.99
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	91.94
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.89
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	91.86
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	91.82
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	91.59
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	91.58
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	91.56
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	91.55
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.43
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	91.22
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	91.2
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	91.13
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.09
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	91.04
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.02
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.0
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.94
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.84
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	90.77
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	90.74
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	90.1
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.18
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.06
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.92
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	89.59
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	89.59
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.53
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	89.53
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	89.53
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	89.46
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.36
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.33
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	89.32
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	89.28
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	89.26
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	89.24
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	89.2
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	89.19
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.11
2epa_A	72	Krueppel-like factor 10; transforming growth facto	89.1
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	89.05
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	89.04
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	88.5
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.82
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.77
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	88.76
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.75
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.75
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	88.66
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.63
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.62
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	88.6
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.57
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.52
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.38
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.37
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	88.37
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.36
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.33
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	88.29
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.28
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.28
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	88.22
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.18
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	87.93
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.13
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.12
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.07
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.02
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.0
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.0
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.98
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.95
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.91
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.88
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.85
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	87.85
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.84
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.83
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.83
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.8
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.78
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.72
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	87.71
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.69
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.69
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	87.68
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.68
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.67
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	87.63
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.59
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	87.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	87.55
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.49
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.45
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.45
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.42
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	87.38
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.38
1paa_A	30	Yeast transcription factor ADR1; transcription reg	87.38
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	87.37
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.3
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.29
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.26
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	87.21
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.19
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.17
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	87.16
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.15
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	87.13
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	87.07
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.04
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	87.03
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.0
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.99
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	86.99
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.99
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.98
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	86.95
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.92
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	86.89
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.84
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	86.83
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.79
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.69
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.66
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	86.64
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.63
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.55
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	86.5
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	86.47
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.4
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.34
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.27
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.02
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.96
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	85.85
1ard_A	29	Yeast transcription factor ADR1; transcription reg	85.69
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	85.47
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	85.31
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	85.14
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	85.08
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.08
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	85.05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	84.99
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	84.96
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	84.84
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.75
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.72
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	84.61
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	84.56
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	84.46
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.29
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	84.15
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	84.12
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	84.12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	83.93
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	83.91
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	83.6
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	83.49
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	83.06
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.02
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.89
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	82.82
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	82.72
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	82.64
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	82.52
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	82.5
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.38
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	82.23
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	82.15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	82.0
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	81.91
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.86
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	81.77
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.52
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	81.47
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	80.83
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	80.79
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.68
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	80.59
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	80.43
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	80.35
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.35
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.3
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	80.18

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.69  E-value=8.7e-17  Score=128.48  Aligned_cols=96  Identities=17%  Similarity=0.321  Sum_probs=68.6

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHhhhhhccCCCCcccccccccccccCCCCcchhhhhccccccccccc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRDLKMCINSTSKKATESRDSADQEMKPNVEDESVKANKTVVGLDQK  112 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~~k~~~~p~s~k~~~~~~~~~~e~~~~~~~~~~q~~~~~~~~~~~  112 (237)
                      ..|+|.||+|+|+|+.++..|+.|++|+++++.+........+.+                   +..             
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~-------------------~~~-------------   78 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVP-------------------AKK-------------   78 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCS-------------------CCC-------------
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCC-------------------CCc-------------
Confidence            569999999999999999999999999999987654210000000                   000             


Q ss_pred             ccCCcccccCCCCCCCCCCCccCCCCCCCCCCCccCCCCCCceeccccccccCCHHHHHHHhcChhHHHHHHhhh
Q 041577          113 LEGGQTLQVKPNSNPCGSDQKTATPPAGSGELPLTNSNKPKEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLL  187 (237)
Q Consensus       113 ~~g~~~~Q~kp~~n~~g~~~k~~~~~~~~ge~~~~~~k~~~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~  187 (237)
                      +                    ...+..       ........|||.+|++.|+|+.+|.+|++|++|+++++.++
T Consensus        79 ~--------------------~~~~~~-------~~~~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           79 F--------------------KAAPAE-------ISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             C--------------------SCCSSC-------CSSCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             c--------------------CCCccc-------cccCCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            0                    000000       01123458999999999999999999999999999998764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.32  E-value=2.9e-07  Score=73.06  Aligned_cols=36  Identities=19%  Similarity=0.407  Sum_probs=33.1

Q ss_pred             CCCceeccccccccCCHHHHHHHhcChhhHHHHHHH
Q 041577           31 KSKEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLL   66 (237)
Q Consensus        31 k~~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l   66 (237)
                      ....+||.||+++|+|+.+|+.|+.|++|+++++.+
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~  125 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR  125 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHh
Confidence            346889999999999999999999999999999865

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.55  E-value=4.7e-05  Score=60.47  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhhhh
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLR  188 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~  188 (237)
                      ..|+|.+|+..|.+...|..|+++++|+++++.++.
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            479999999999999999999999999999999863

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.22  E-value=0.00019  Score=57.00  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=33.6

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ..+||.+|+..|.+...|..|+.+++|+++++.|..
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            468999999999999999999999999999998863

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.10  E-value=0.00032  Score=51.27  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=28.6

Q ss_pred             ceecccccccc--CCHHHHHHHhcChhHHHHHHhh
Q 041577          154 EWSCALCQVSA--PTERGLDEHLQGRKHKAKVAGL  186 (237)
Q Consensus       154 ~~~C~lC~v~~--~s~~~l~~Hl~GkkH~~~~~~~  186 (237)
                      .|||+.|++.+  .|.+....|++|++|+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            58999999999  4577789999999999987664

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.71  E-value=0.00093  Score=48.79  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=28.7

Q ss_pred             ceecccccccc--CCHHHHHHHhcChhhHHHHHHH
Q 041577           34 EWSCVLCQVSA--TTERDLDVHLQGKKHKAKEKLL   66 (237)
Q Consensus        34 ~~~C~vC~Vs~--tSe~~l~~Hl~GkKHk~k~~~l   66 (237)
                      .+||+.|++.+  .|......|++|+||+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            57899999999  4677789999999999998764

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.55  E-value=0.0054  Score=57.42  Aligned_cols=37  Identities=27%  Similarity=0.511  Sum_probs=32.9

Q ss_pred             Cceecccccc------ccCCHHHHHHHhcChhHHHHHHhhhhc
Q 041577          153 KEWSCALCQV------SAPTERGLDEHLQGRKHKAKVAGLLRD  189 (237)
Q Consensus       153 ~~~~C~lC~v------~~~s~~~l~~Hl~GkkH~~~~~~~~~~  189 (237)
                      ..+.|++|+.      .+..+.+++.|++|++|+++++..+..
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4678999998      899999999999999999999877543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.21  E-value=0.008  Score=40.91  Aligned_cols=38  Identities=21%  Similarity=0.435  Sum_probs=33.4

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHHHHHhhhhccC
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRDKK  191 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~~~  191 (237)
                      ...|++|+|.++....++.|+-.+.|..+|+.+-....
T Consensus        13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~~ql   50 (55)
T 2yrk_A           13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQL   50 (55)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSSC
T ss_pred             CccccccCcccccccchhhhhccHHHHHHHHHHHHhhh
Confidence            35799999999999999999999999999997755443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.17  E-value=0.036  Score=37.91  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|+.
T Consensus        46 ~~~C~~C~~~f~~~~~L~~H~~   67 (77)
T 2cot_A           46 PYKCDECGKAFIQRSHLIGHHR   67 (77)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999984

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.08  E-value=0.03  Score=38.38  Aligned_cols=22  Identities=14%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|++
T Consensus        38 ~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           38 RFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999974

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.92  E-value=0.027  Score=37.84  Aligned_cols=22  Identities=18%  Similarity=0.643  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|++
T Consensus        37 ~~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A           37 PFKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CEeCCCCCCccCCHHHHHHHHH
Confidence            4899999999999999999974

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.91  E-value=0.057  Score=36.59  Aligned_cols=22  Identities=18%  Similarity=0.526  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.+...|..|++
T Consensus        45 ~~~C~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           45 PYRCNICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CEECCCCCchhCCHHHHHHHHH
Confidence            5889999999999999999984

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.75  E-value=0.031  Score=40.56  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             CceeccccccccC-CHHHHHHHh
Q 041577           33 KEWSCVLCQVSAT-TERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~t-Se~~l~~Hl   54 (237)
                      ..+.|.+|...|. ....|..|+
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~   45 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHM   45 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHH
T ss_pred             CCcCCCCCCCChhhhHHHHHHHH
Confidence            5688999999999 999999886

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.61  E-value=0.028  Score=38.08  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|++
T Consensus        42 ~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           42 PYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999984

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=94.44  E-value=0.046  Score=37.06  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|+....|..|++
T Consensus        32 p~~C~~C~k~F~~~~~L~~H~~   53 (60)
T 4gzn_C           32 PRSCPECGKCFRDQSEVNRHLK   53 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHGG
T ss_pred             CeECCCCCCCcCCHHHHHHHhC
Confidence            5899999999999999999985

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=94.42  E-value=0.034  Score=35.52  Aligned_cols=22  Identities=27%  Similarity=0.715  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|+.
T Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C           32 PYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcCCCCCcchhCCHHHHHHHHH
Confidence            4889999999999999999985

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.42  E-value=0.05  Score=39.49  Aligned_cols=22  Identities=23%  Similarity=0.637  Sum_probs=20.6

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|++
T Consensus        56 ~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           56 VFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             SEECTTSSCEESSHHHHHHHHH
T ss_pred             ccCCCCCCCEeCCHHHHHHhCc
Confidence            5899999999999999999985

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=94.31  E-value=0.038  Score=35.75  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.+...|..|++
T Consensus        30 ~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           30 PYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            5889999999999999999975

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=94.29  E-value=0.076  Score=33.77  Aligned_cols=24  Identities=25%  Similarity=0.678  Sum_probs=21.4

Q ss_pred             ceeccccccccCCHHHHHHHhcCh
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGR  177 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~Gk  177 (237)
                      .|.|.+|+..|.+...|..|++-.
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A           29 PYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CccCCCCCchhcCHHHHHHHHHHh
Confidence            589999999999999999998643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.17  E-value=0.03  Score=52.42  Aligned_cols=36  Identities=25%  Similarity=0.507  Sum_probs=31.8

Q ss_pred             Cceecccccc------ccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQV------SATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~V------s~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ...+|+||+.      .+.++.+-+.|+.|++|+++++..+.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k  400 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTR  400 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHH
Confidence            4568999998      89999999999999999999986543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=93.65  E-value=0.31  Score=34.84  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             CCCceeccccccccCCHHHHHHHh
Q 041577           31 KSKEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        31 k~~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      ....+.|.+|...|.+...|..|+
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~   37 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHE   37 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHH
Confidence            346788999999999999999996

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.58  E-value=0.053  Score=38.14  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CceECCCccchhCCHHHHHHHHH
Confidence            46999999999999999999984

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=93.54  E-value=0.037  Score=51.68  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhh
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGL  186 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~  186 (237)
                      ..+||..|+..|.++..+..||.|++|.+.++..
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            4789999999999999999999999999987553

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=93.49  E-value=0.067  Score=37.11  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999986

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=93.31  E-value=0.024  Score=38.52  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             eccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           36 SCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        36 ~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      -|.+|+|.++....+++|+--+.|..+|+.+-.
T Consensus        15 eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             cccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence            699999999999999999999999999986543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=93.25  E-value=0.088  Score=35.72  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A           56 KPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CCEECTTTSCEESSHHHHHHHHH
T ss_pred             CCCcCCCcchhhCChHHHHHHHH
Confidence            46999999999999999999985

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.99  E-value=0.067  Score=39.26  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           93 MPYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCccchhCCHHHHHHHHH
Confidence            46999999999999999999985

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.90  E-value=0.089  Score=37.02  Aligned_cols=23  Identities=22%  Similarity=0.647  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999986

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.61  E-value=0.08  Score=28.39  Aligned_cols=22  Identities=27%  Similarity=0.661  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            5889999999999999999974

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.59  E-value=0.2  Score=35.15  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      ..+.|.+|...|.+...|..|+
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~   28 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHM   28 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHG
T ss_pred             cCeECCCCCCccCCHHHHHHHH
Confidence            4578999999999999999886

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=92.58  E-value=0.16  Score=36.39  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.+...|..|++
T Consensus        73 ~~~C~~C~~~f~~~~~L~~H~~   94 (106)
T 2ee8_A           73 PFKCQECGKGFCQSRTLAVHKT   94 (106)
T ss_dssp             TTSCSSSCCCCSSHHHHHHHHH
T ss_pred             CeECCCcCCcccCHHHHHHHHH
Confidence            4889999999999999999984

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.46  E-value=0.091  Score=28.25  Aligned_cols=22  Identities=18%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999975

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=92.24  E-value=0.13  Score=34.78  Aligned_cols=22  Identities=14%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.+...|..|+.
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~   50 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTF   50 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeeCCcCChhhCCHHHHHHHHH
Confidence            4889999999999999999985

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=92.22  E-value=0.089  Score=28.29  Aligned_cols=22  Identities=18%  Similarity=0.570  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=92.14  E-value=0.1  Score=27.71  Aligned_cols=21  Identities=29%  Similarity=0.662  Sum_probs=19.5

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577          155 WSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      |.|.+|+..|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            679999999999999999984

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.14  E-value=0.092  Score=28.37  Aligned_cols=22  Identities=23%  Similarity=0.807  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999975

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.99  E-value=0.093  Score=32.74  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577          153 KEWSCALCQVSAPTERGLDEHL  174 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl  174 (237)
                      ..++|+.|+++|++-..|..|.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            4789999999999999999995

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.94  E-value=0.077  Score=38.50  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        68 ~~~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           68 KKLTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHH
T ss_pred             CCccCccccchhCCHHHHHHHHH
Confidence            46999999999999999999975

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=91.89  E-value=0.1  Score=29.53  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            46999999999999999999975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.86  E-value=0.09  Score=36.92  Aligned_cols=22  Identities=18%  Similarity=0.579  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.+...|..|++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~   56 (95)
T 2yt9_A           35 PYSCPVCGLRFKRKDRMSYHVR   56 (95)
T ss_dssp             SEECSSSCCEESCHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999984

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=91.82  E-value=0.083  Score=28.51  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999985

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=91.59  E-value=0.17  Score=35.36  Aligned_cols=21  Identities=19%  Similarity=0.589  Sum_probs=19.3

Q ss_pred             ceeccccccccCCHHHHHHHh
Q 041577           34 EWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      .+.|.+|...|.+...|..|.
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~   23 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHI   23 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHH
Confidence            578999999999999999986

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.58  E-value=0.11  Score=27.73  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            5789999999999999999974

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.56  E-value=0.69  Score=33.22  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=20.0

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      ..+.|.+|...|.+...|..|.
T Consensus        15 ~~~~C~~C~~~f~~~~~l~~H~   36 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLLEQGSHE   36 (107)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHH
Confidence            4688999999999999999986

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=91.55  E-value=0.13  Score=29.24  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.43  E-value=0.14  Score=31.86  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=19.8

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      ...+|..|+|+|++-..|..|-
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            4679999999999999999984

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=91.22  E-value=0.099  Score=48.81  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=29.6

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHH
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKL   65 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~   65 (237)
                      ...+|..|+-.|.++..+..|+.|++|+++.+.
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            357799999999999999999999999987654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.20  E-value=0.25  Score=35.96  Aligned_cols=21  Identities=19%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             ceeccccccccCCHHHHHHHh
Q 041577          154 EWSCALCQVSAPTERGLDEHL  174 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl  174 (237)
                      .|.|.+|+..|.....|..|+
T Consensus        62 ~~~C~~Cgk~F~~~~~L~~H~   82 (96)
T 2ctd_A           62 MFTCHHCGKQLRSLAGMKYHV   82 (96)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHH
T ss_pred             CeECCCCCCeeCCHHHHHHHh
Confidence            477999999999999999994

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.13  E-value=0.19  Score=36.73  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~   87 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMV   87 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999984

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.09  E-value=0.14  Score=29.25  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.+...|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHH
Confidence            46899999999999999999974

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.04  E-value=0.15  Score=27.37  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|+.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999975

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.02  E-value=0.14  Score=29.18  Aligned_cols=23  Identities=26%  Similarity=0.673  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999984

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.00  E-value=0.16  Score=29.11  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.94  E-value=0.29  Score=37.85  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        77 k~~~C~~C~k~F~~~~~L~~H~~   99 (133)
T 2lt7_A           77 RRYQCLACGKSFINYQFMSSHIK   99 (133)
T ss_dssp             CCEEESSSCCEESSHHHHHHHHH
T ss_pred             ccccCCCCCCCcCCHHHHHHHhH
Confidence            46999999999999999999984

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.84  E-value=0.14  Score=29.32  Aligned_cols=23  Identities=26%  Similarity=0.765  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=90.77  E-value=0.14  Score=29.18  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999985

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=90.74  E-value=0.16  Score=29.23  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            46999999999999999999975

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.10  E-value=0.047  Score=29.11  Aligned_cols=22  Identities=18%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4789999999999999999975

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.18  E-value=0.18  Score=28.86  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            47999999999999999999974

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.06  E-value=0.39  Score=37.11  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             ceeccccccccCCHHHHHHHh
Q 041577           34 EWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      .+.|++|+.+|.+...|..|.
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~   42 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHF   42 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHH
Confidence            467999999999999998886

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.92  E-value=0.17  Score=29.13  Aligned_cols=23  Identities=26%  Similarity=0.743  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=89.59  E-value=0.15  Score=27.34  Aligned_cols=22  Identities=18%  Similarity=0.684  Sum_probs=19.9

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            4789999999999999999975

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=89.59  E-value=0.33  Score=36.12  Aligned_cols=23  Identities=13%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        99 ~~~~C~~C~k~f~~~~~l~~H~~  121 (129)
T 2wbt_A           99 HTKVCPVCKKEFTSTDSALDHVC  121 (129)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999975

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.53  E-value=0.18  Score=31.02  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             eeccccccccCCHHHHHHHh
Q 041577           35 WSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      +.|.+|.+.+++..+|..|+
T Consensus         6 FiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHH
Confidence            68999999999999999999

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.53  E-value=0.24  Score=29.45  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999986

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=89.53  E-value=0.2  Score=29.35  Aligned_cols=23  Identities=17%  Similarity=0.687  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=89.46  E-value=0.21  Score=30.49  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=20.8

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577          153 KEWSCALCQVSAPTERGLDEHL  174 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl  174 (237)
                      +.|.|..|..+|+..+.|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            4799999999999999999997

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.36  E-value=0.25  Score=29.97  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.33  E-value=0.26  Score=30.10  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            47999999999999999999985

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=89.32  E-value=0.13  Score=27.35  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=19.9

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|..|...|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.28  E-value=0.27  Score=29.02  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            46999999999999999999985

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=89.26  E-value=0.26  Score=29.18  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            46999999999999999999985

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.24  E-value=0.24  Score=29.30  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.9

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=89.20  E-value=0.2  Score=31.33  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|.+|...|.....|..|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            46999999999999999999985

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=89.19  E-value=0.38  Score=34.86  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             Cceec--cccccccCCHHHHHHHhc
Q 041577          153 KEWSC--ALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C--~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|  .+|+..|.+...|..|++
T Consensus        93 ~~~~C~~~~C~~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           93 KPFSCRWPSCQKKFARSDELVRHHN  117 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCCCccccCCHHHHHHHHh
Confidence            46899  899999999999999985

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.11  E-value=0.28  Score=29.69  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            47999999999999999999985

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=89.10  E-value=0.68  Score=30.74  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             CCCCceeccc--cccccCCHHHHHHHh
Q 041577           30 NKSKEWSCVL--CQVSATTERDLDVHL   54 (237)
Q Consensus        30 kk~~~~~C~v--C~Vs~tSe~~l~~Hl   54 (237)
                      .....+.|.+  |...|.....|..|.
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~   39 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHT   39 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHH
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHH
Confidence            3446889999  999999999998885

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.07  E-value=0.27  Score=29.85  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999985

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.05  E-value=0.27  Score=29.65  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            47999999999999999999985

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=89.04  E-value=0.2  Score=40.27  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=23.3

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHH
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKV  183 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~  183 (237)
                      +.=||++|.+.|.+   |+.|+.+.+|+.-+
T Consensus        86 k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           86 KKGYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             --CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            35689999999995   88999999998765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.50  E-value=0.08  Score=28.75  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            4789999999999999999985

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.82  E-value=0.25  Score=30.04  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46999999999999999999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.77  E-value=0.26  Score=29.92  Aligned_cols=23  Identities=22%  Similarity=0.570  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=88.76  E-value=0.26  Score=29.13  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhh
Confidence            46999999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.75  E-value=0.3  Score=29.60  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.75  E-value=0.26  Score=29.42  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            46899999999999999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.66  E-value=0.26  Score=29.25  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            46999999999999999999984

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.63  E-value=0.31  Score=29.60  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999985

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.62  E-value=0.29  Score=29.58  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.60  E-value=0.3  Score=29.52  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999985

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.57  E-value=0.28  Score=29.32  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHH
Confidence            46999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.52  E-value=0.31  Score=29.54  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            46999999999999999999985

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.38  E-value=0.31  Score=29.63  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            47999999999999999999985

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.37  E-value=0.29  Score=29.63  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999975

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.37  E-value=0.32  Score=29.48  Aligned_cols=23  Identities=26%  Similarity=0.570  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            46999999999999999999986

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.36  E-value=0.31  Score=29.57  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999984

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=88.33  E-value=0.29  Score=29.77  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.33  E-value=0.33  Score=29.50  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.29  E-value=0.34  Score=29.08  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.28  E-value=0.33  Score=29.53  Aligned_cols=23  Identities=17%  Similarity=0.420  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            47999999999999999999986

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.28  E-value=0.34  Score=29.44  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.22  E-value=0.29  Score=29.58  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            47999999999999999999985

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.18  E-value=0.34  Score=29.38  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            47999999999999999999985

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=87.93  E-value=0.094  Score=28.44  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            5789999999999999999975

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.13  E-value=0.32  Score=29.43  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.12  E-value=0.34  Score=29.26  Aligned_cols=23  Identities=22%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.07  E-value=0.31  Score=29.65  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHH
Confidence            47999999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.06  E-value=0.3  Score=29.53  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            47999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.02  E-value=0.32  Score=29.45  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            46999999999999999999985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.00  E-value=0.3  Score=29.70  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.00  E-value=0.31  Score=29.47  Aligned_cols=23  Identities=22%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999985

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.98  E-value=0.38  Score=29.15  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            47999999999999999999985

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.95  E-value=0.32  Score=29.51  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.91  E-value=0.38  Score=29.21  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.7

Q ss_pred             CceeccccccccCCHHHHHHHhcC
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      ..|.|.+|+..|.....|..|++-
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCcCCCccChhhCChHHHHHHHHH
Confidence            469999999999999999999863

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.88  E-value=0.33  Score=29.51  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.85  E-value=0.34  Score=29.35  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCChHHHHHHHh
Confidence            46999999999999999999986

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.85  E-value=0.26  Score=29.16  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.84  E-value=0.32  Score=29.51  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            47999999999999999999975

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.83  E-value=0.24  Score=28.52  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             CceeccccccccCCH-HHHHHHhc
Q 041577          153 KEWSCALCQVSAPTE-RGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~-~~l~~Hl~  175 (237)
                      ..|.|.+|...|... ..|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            469999999999999 99999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.83  E-value=0.33  Score=29.03  Aligned_cols=24  Identities=17%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             CceeccccccccCCHHHHHHHhcC
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      ..|.|.+|...|.....|..|+.-
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            469999999999999999999863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.80  E-value=0.36  Score=29.22  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeeCcccCcccCChHHHHHHHH
Confidence            47999999999999999999986

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.78  E-value=0.31  Score=29.67  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.72  E-value=0.29  Score=29.73  Aligned_cols=23  Identities=30%  Similarity=0.639  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=87.71  E-value=0.28  Score=28.87  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=20.6

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.||+.......+|+.|+.
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            6789999999999999999985

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.69  E-value=0.33  Score=29.34  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHH
Confidence            46999999999999999999974

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.69  E-value=0.33  Score=29.31  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            46999999999999999999985

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=87.68  E-value=0.39  Score=28.98  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999985

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.68  E-value=0.34  Score=29.39  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999985

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.67  E-value=0.34  Score=29.33  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            46899999999999999999985

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.63  E-value=0.39  Score=29.07  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            46999999999999999999986

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.59  E-value=0.4  Score=29.04  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            46899999999999999999985

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=87.57  E-value=0.97  Score=35.77  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus       160 ~~~~C~~C~~~f~~~~~L~~H~~  182 (190)
T 2i13_A          160 KPYKCPECGKSFSRRDALNVHQR  182 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999986

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=87.55  E-value=0.61  Score=31.46  Aligned_cols=20  Identities=25%  Similarity=0.524  Sum_probs=18.4

Q ss_pred             eec--cccccccCCHHHHHHHh
Q 041577           35 WSC--VLCQVSATTERDLDVHL   54 (237)
Q Consensus        35 ~~C--~vC~Vs~tSe~~l~~Hl   54 (237)
                      +.|  .+|+..|.+...|..|.
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~   23 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQ   23 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHH
T ss_pred             ccCCCCCCCcccCCHHHHHHHH
Confidence            579  99999999999999996

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.49  E-value=0.4  Score=28.96  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CceeccccccccCCHHHHHHHhcC
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      ..|.|.+|+..|.....|..|+.-
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHH
Confidence            469999999999999999999853

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.45  E-value=0.36  Score=28.96  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.45  E-value=0.35  Score=29.37  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.42  E-value=0.39  Score=29.09  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             CceeccccccccCCHHHHHHHhcC
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      ..|.|.+|+..|.....|..|++-
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            479999999999999999999853

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=87.38  E-value=0.41  Score=28.96  Aligned_cols=23  Identities=26%  Similarity=0.637  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=87.38  E-value=0.39  Score=29.08  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            47999999999999999999985

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=87.38  E-value=0.28  Score=26.43  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=19.2

Q ss_pred             ceeccccccccCCHHHHHHHh
Q 041577          154 EWSCALCQVSAPTERGLDEHL  174 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl  174 (237)
                      .|.|..|+..|.....|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            478999999999999999994

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.37  E-value=0.42  Score=28.98  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            46999999999999999999986

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.30  E-value=0.37  Score=29.19  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999986

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.29  E-value=0.36  Score=29.14  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.26  E-value=0.3  Score=29.73  Aligned_cols=23  Identities=22%  Similarity=0.609  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46999999999999999999985

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=87.21  E-value=0.39  Score=25.50  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             ceecc--ccccccCCHHHHHHHhc
Q 041577          154 EWSCA--LCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~--lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.  .|+..|.....|..|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            47899  99999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.19  E-value=0.35  Score=29.36  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999974

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=87.17  E-value=0.44  Score=28.76  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            47999999999999999999985

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.16  E-value=0.38  Score=29.02  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHHH
Confidence            46899999999999999999974

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.15  E-value=0.39  Score=29.08  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=87.13  E-value=0.39  Score=29.61  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CCceeccccccccCCHHHHHHHhc
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ...|.|.+|...|.....|..|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH
Confidence            357999999999999999999985

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.07  E-value=0.36  Score=29.01  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=20.9

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.07  E-value=0.38  Score=29.20  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            47999999999999999999985

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=87.04  E-value=0.4  Score=29.10  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.03  E-value=0.37  Score=28.94  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.00  E-value=0.37  Score=29.35  Aligned_cols=23  Identities=17%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999984

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.99  E-value=0.31  Score=28.30  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.3

Q ss_pred             CceeccccccccCCHHHHHHH-h
Q 041577          153 KEWSCALCQVSAPTERGLDEH-L  174 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~H-l  174 (237)
                      ..|.|.+|...|.....|..| +
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~   30 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVI   30 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            469999999999999999999 5

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=86.99  E-value=0.46  Score=26.05  Aligned_cols=22  Identities=18%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             ceecc--ccccccCCHHHHHHHhc
Q 041577          154 EWSCA--LCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~--lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.  .|...|.....|..|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH
Confidence            47797  99999999999999985

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.99  E-value=0.39  Score=29.00  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.98  E-value=0.38  Score=29.13  Aligned_cols=23  Identities=17%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=86.95  E-value=0.44  Score=28.89  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.92  E-value=0.39  Score=29.16  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.89  E-value=0.45  Score=25.27  Aligned_cols=22  Identities=18%  Similarity=0.611  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|...|.....|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4679999999999999999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.84  E-value=0.37  Score=29.61  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.6

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|.+.+.+..+|..|+.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHH
Confidence            5999999999999999999983

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.83  E-value=0.4  Score=29.09  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=86.83  E-value=0.85  Score=33.34  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             Cceeccc--cccccCCHHHHHHHhc
Q 041577          153 KEWSCAL--CQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~l--C~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+  |+..|.+...|..|++
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~   85 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVR   85 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHH
Confidence            4699987  9999999999999984

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.79  E-value=0.29  Score=29.70  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHH
Confidence            46999999999999999999983

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.69  E-value=0.4  Score=29.01  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHH
Confidence            47999999999999999999974

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.66  E-value=0.41  Score=28.95  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHH
Confidence            47999999999999999999974

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.64  E-value=1.3  Score=31.69  Aligned_cols=32  Identities=13%  Similarity=0.315  Sum_probs=25.7

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhh
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGL  186 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~  186 (237)
                      ..|.|.+|+..|.....|..|++  .|.......
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~--~~~~~~~~~   95 (110)
T 2csh_A           64 KPYECNICAKRFMWRDSFHRHVT--SCTKSYEAA   95 (110)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeCCCCcchhcCHHHHHHHHH--Hccccccch
Confidence            46999999999999999999995  455554443

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.63  E-value=0.42  Score=28.94  Aligned_cols=23  Identities=26%  Similarity=0.535  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHH
Confidence            47999999999999999999974

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.55  E-value=0.43  Score=28.85  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.50  E-value=0.4  Score=25.37  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             ceeccccccccCCHHHHHHHh
Q 041577           34 EWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      .+.|.+|...|.....|..|.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~   23 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHL   23 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHH
Confidence            478999999999999999996

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=86.47  E-value=0.38  Score=30.52  Aligned_cols=23  Identities=26%  Similarity=0.606  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.40  E-value=0.42  Score=28.92  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.34  E-value=0.47  Score=28.61  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.27  E-value=0.39  Score=29.09  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHH
Confidence            47999999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.02  E-value=0.35  Score=29.40  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHH
Confidence            46999999999999999999985

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.96  E-value=0.46  Score=28.72  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=85.85  E-value=0.44  Score=28.75  Aligned_cols=23  Identities=22%  Similarity=0.600  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVR   31 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=85.69  E-value=0.55  Score=24.89  Aligned_cols=22  Identities=18%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|...|.....|..|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            3679999999999999999963

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.47  E-value=0.37  Score=28.87  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhH
Confidence            46999999999999999999974

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=85.31  E-value=0.48  Score=30.22  Aligned_cols=23  Identities=17%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             ceeccccccccCCHHHHHHHhcC
Q 041577          154 EWSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      .|.|.+|+..|.+...|..|++-
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCcCCCCccccCCHHHHHHHHHH
Confidence            58899999999999999999863

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=85.14  E-value=0.59  Score=24.44  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=18.9

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577           35 WSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      +.|.+|..+|.....|..|..
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            469999999999999999973

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=85.08  E-value=0.37  Score=38.74  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=23.0

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHH
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKE   63 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~   63 (237)
                      ...||++|.+.|..   |..|+...+|+.-+
T Consensus        86 k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           86 KKGYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             --CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            56799999999985   77999999997654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=85.08  E-value=0.5  Score=26.44  Aligned_cols=23  Identities=22%  Similarity=0.522  Sum_probs=20.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|...|.....|..|..
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            35789999999999999999963

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=85.05  E-value=0.47  Score=29.88  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~   25 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLR   25 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHH
Confidence            36899999999999999999985

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.99  E-value=1.1  Score=30.10  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             CCceeccccccccCCHHHHHHHhc
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ...|.|.+|+..|.....|..|++
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~   39 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRR   39 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCEECCCCCcccCCHHHHHHHHH
Confidence            457999999999999999999986

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=84.96  E-value=0.35  Score=29.37  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHH
Confidence            46999999999999999999975

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=84.84  E-value=0.47  Score=26.14  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             ceecc--ccccccCCHHHHHHHhc
Q 041577          154 EWSCA--LCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~--lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.  .|+..|.....|..|+.
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~   26 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHH
Confidence            57899  89999999999999985

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.75  E-value=0.4  Score=29.02  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCeECCcCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.72  E-value=0.32  Score=29.49  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999985

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=84.61  E-value=0.6  Score=26.24  Aligned_cols=23  Identities=26%  Similarity=0.585  Sum_probs=20.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|...|.....|..|..
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999974

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=84.56  E-value=0.51  Score=29.68  Aligned_cols=21  Identities=19%  Similarity=0.558  Sum_probs=19.5

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577          155 WSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      |.|.+|+..|.+...|..|++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~   22 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIR   22 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             CcCCCCcCcCCCHHHHHHHHH
Confidence            789999999999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=84.46  E-value=0.64  Score=24.75  Aligned_cols=22  Identities=18%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|...|.....|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            4679999999999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.29  E-value=0.64  Score=26.23  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      ..+.|++|...|.....|..|.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHK   29 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHH
Confidence            4578999999999999999996

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.15  E-value=0.46  Score=28.65  Aligned_cols=23  Identities=22%  Similarity=0.236  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=84.12  E-value=0.55  Score=31.57  Aligned_cols=23  Identities=22%  Similarity=0.580  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|.+|+..|+....|..|++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~   25 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRR   25 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHH
Confidence            46999999999999999999984

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.12  E-value=0.27  Score=29.49  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHH
T ss_pred             CCeECcccCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=83.93  E-value=1.7  Score=34.26  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus       132 ~~~~C~~C~~~f~~~~~L~~H~~  154 (190)
T 2i13_A          132 KPYKCPECGKSFSREDNLHTHQR  154 (190)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=83.91  E-value=0.62  Score=30.29  Aligned_cols=23  Identities=17%  Similarity=0.551  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|++
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999985

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.60  E-value=0.72  Score=30.50  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.+...|..|++
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~   30 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHER   30 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            57999999999999999999985

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.49  E-value=0.76  Score=24.19  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|.-.|.....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4679999999999999999863

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=83.06  E-value=0.81  Score=26.38  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             Cceeccc--cccccCCHHHHHHHhc
Q 041577          153 KEWSCAL--CQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~l--C~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+  |+..|.....|..|++
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~   31 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLR   31 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHH
Confidence            4689996  9999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.02  E-value=0.77  Score=26.00  Aligned_cols=22  Identities=27%  Similarity=0.797  Sum_probs=19.9

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      ..+.|.+|...|.....|..|.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHM   29 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHH
Confidence            4578999999999999999996

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.89  E-value=0.81  Score=27.92  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             Cceeccc--cccccCCHHHHHHHhc
Q 041577          153 KEWSCAL--CQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~l--C~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|..  |...|.....|..|++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r   32 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLK   32 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHH
Confidence            4799986  9999999999999984

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=82.82  E-value=0.6  Score=24.78  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|...|.....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            3679999999999999999974

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=82.72  E-value=0.75  Score=29.12  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.64  E-value=0.74  Score=30.71  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             CCceeccccccccCCHHHHHHHhc
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ...|.|.+|+..|.....|..|++
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~   35 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQR   35 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCccCCHHHHHHHHH
Confidence            357999999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=82.52  E-value=0.87  Score=24.07  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|..+|.....|..|..
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4779999999999999999963

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=82.50  E-value=0.84  Score=25.94  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|...|.....|..|..
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            35789999999999999999964

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.38  E-value=0.86  Score=25.81  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|...|.....|..|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=82.23  E-value=0.72  Score=29.98  Aligned_cols=23  Identities=13%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYV   31 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=82.15  E-value=1.4  Score=30.41  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CCceeccccccccCCHHHHHHHhc
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .+.|.|.+|...|.....|..|++
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r   34 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEA   34 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhh
Confidence            357999999999999999999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.00  E-value=0.79  Score=30.89  Aligned_cols=26  Identities=23%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHH
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHK  180 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~  180 (237)
                      ..|.|.+|+..|.....|..|++  .|.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~--~h~   31 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQR--KHA   31 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH--HHH
T ss_pred             cCeECCCCCCeeCCHHHHHHHHH--Hhh
Confidence            57999999999999999999984  454

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=81.91  E-value=1.1  Score=29.97  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             CCceeccccccccCCHHHHHHHhc
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ...|.|.+|+..|.+...|..|++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~   38 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKT   38 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHH
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH
Confidence            357999999999999999999984

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.86  E-value=0.89  Score=25.58  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=20.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|...|.....|..|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999963

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=81.77  E-value=0.92  Score=30.07  Aligned_cols=23  Identities=22%  Similarity=0.583  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|++
T Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           48 KPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999985

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.52  E-value=0.87  Score=25.86  Aligned_cols=22  Identities=27%  Similarity=0.709  Sum_probs=19.8

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|...|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            4789999999999999999964

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.47  E-value=0.85  Score=30.73  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=20.9

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|.....|..|+.
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=80.83  E-value=1  Score=25.34  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             eeccccccccCCHHHHHHHhc
Q 041577           35 WSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        35 ~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      +.|.+|...|.....|..|..
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            3 FACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             ccCCCCCchhCCHHHHHHHHH
Confidence            579999999999999999963

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=80.79  E-value=1.3  Score=26.80  Aligned_cols=22  Identities=18%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      +.+.|++|..+|+....|..|.
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            4678999999999999999996

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.68  E-value=1  Score=25.46  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|...|.....|..|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            45789999999999999999963

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.59  E-value=1.1  Score=25.68  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             Cceecc--ccccccCCHHHHHHHhc
Q 041577          153 KEWSCA--LCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~--lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.  .|+..|.....|..|++
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~   29 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKH   29 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCCCCcccCCHHHHHHHHH
Confidence            468999  59999999999999974

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=80.43  E-value=0.12  Score=29.29  Aligned_cols=22  Identities=18%  Similarity=0.549  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|...|.....|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~   23 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIK   23 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTT
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.35  E-value=1.1  Score=26.34  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=20.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|++|..+|.....|..|..
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.35  E-value=1.1  Score=26.92  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|++|...|.....|..|..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            45789999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.30  E-value=1.1  Score=27.04  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            45789999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=80.18  E-value=1.1  Score=26.27  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      ..+.|.+|..+|.....|..|..
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            45889999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.6
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.32
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.11
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.96
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.49
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.26
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.49
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.13
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.76
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	93.93
d1fu9a_	36	U-shaped transcription factor, different fingers {	93.8
d1fu9a_	36	U-shaped transcription factor, different fingers {	93.5
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.01
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.81
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	92.2
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.12
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	91.99
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	91.67
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	91.6
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.74
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	90.45
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.36
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	89.86
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.75
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	89.18
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	88.86
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	86.25
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.88
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	85.16
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	84.31
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	83.61
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	83.01
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.55
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	82.17
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	81.52
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	81.5
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	80.39
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	80.16

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.60  E-value=1.2e-08  Score=68.21  Aligned_cols=33  Identities=21%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHH
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKL   65 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~   65 (237)
                      ..-+|.||+++|+|+.++++||.|++|+++++.
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~   52 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRL   52 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHHHH
Confidence            445899999999999999999999999999874

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.32  E-value=1.8e-07  Score=62.34  Aligned_cols=35  Identities=14%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhhh
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLL  187 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~  187 (237)
                      ...+|.||+.+|||..+.++|+.|+.|.++|+..+
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            34489999999999999999999999999998653

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.9e-07  Score=61.86  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             CceeccccccccCCHHHHHHHhcChhHHHHHHhhhh
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLR  188 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~  188 (237)
                      ..|||-.|+..|.|+.+|+.|+++++|+++|+.|+.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            379999999999999999999999999999999964

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.3e-06  Score=59.43  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=33.6

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHhh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLRD   68 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~~   68 (237)
                      ..|||-+|...|.++.+|+.|..+++|+++++.|+.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            459999999999999999999999999999999864

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.49  E-value=2.5e-05  Score=53.97  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             CceeccccccccCCHHHHHHHhcChhhHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHLQGKKHKAKEKLLR   67 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l~   67 (237)
                      ...+|.||++...|+++-.+||.|+||..+++..-
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46689999999999999999999999999998643

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.26  E-value=8.7e-05  Score=51.20  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.7

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHHHHHhhh
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKAKVAGLL  187 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~  187 (237)
                      ..+|.+|++...|+++-.+|++|+||..+|+.+-
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999998764

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00099  Score=44.91  Aligned_cols=34  Identities=26%  Similarity=0.506  Sum_probs=29.3

Q ss_pred             ceeccccccccC--CHHHHHHHhcChhHHHHHHhhh
Q 041577          154 EWSCALCQVSAP--TERGLDEHLQGRKHKAKVAGLL  187 (237)
Q Consensus       154 ~~~C~lC~v~~~--s~~~l~~Hl~GkkH~~~~~~~~  187 (237)
                      .|+|+.|++.++  |.+.-..|++|++|+.+++..-
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy   38 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHT
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHH
Confidence            589999999995  4667789999999999998753

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0021  Score=43.20  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=29.2

Q ss_pred             ceeccccccccC--CHHHHHHHhcChhhHHHHHHHh
Q 041577           34 EWSCVLCQVSAT--TERDLDVHLQGKKHKAKEKLLR   67 (237)
Q Consensus        34 ~~~C~vC~Vs~t--Se~~l~~Hl~GkKHk~k~~~l~   67 (237)
                      ..||+.|++.++  |...-..|+.|++|+.+++..-
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy   38 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHT
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHH
Confidence            579999999996  5677789999999999988654

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.76  E-value=0.01  Score=34.76  Aligned_cols=24  Identities=25%  Similarity=0.620  Sum_probs=21.7

Q ss_pred             CCCceeccccccccCCHHHHHHHh
Q 041577          151 KPKEWSCALCQVSAPTERGLDEHL  174 (237)
Q Consensus       151 ~~~~~~C~lC~v~~~s~~~l~~Hl  174 (237)
                      ++..|.|.-|.++|.|.+.|+.|.
T Consensus         5 kparf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cccceeccccceeecChhHHHhhh
Confidence            356899999999999999999995

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.93  E-value=0.016  Score=34.42  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|.+|+..|+....|..|++
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             ccccCCCCCCcccChHHHHHHcc
Confidence            47999999999999999999984

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.80  E-value=0.021  Score=33.90  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.2

Q ss_pred             ceeccccccccCCHHHHHHHh
Q 041577           34 EWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      ..||..|+|+|++-..|..|-
T Consensus         8 ~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           8 KKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHH
T ss_pred             hhHHhhCCceehhHHHHHHHH
Confidence            579999999999999999984

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.50  E-value=0.017  Score=34.36  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=19.4

Q ss_pred             ceeccccccccCCHHHHHHHh
Q 041577          154 EWSCALCQVSAPTERGLDEHL  174 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl  174 (237)
                      ..||..|+|+||+...|..|-
T Consensus         8 ~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           8 KKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHH
T ss_pred             hhHHhhCCceehhHHHHHHHH
Confidence            578999999999999999994

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.01  E-value=0.028  Score=31.91  Aligned_cols=22  Identities=18%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|+..+.|..|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            5889999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.81  E-value=0.03  Score=31.58  Aligned_cols=23  Identities=22%  Similarity=0.583  Sum_probs=21.0

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|.+|+..|+..+.|..|++
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCC
Confidence            46899999999999999999984

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.03  Score=31.39  Aligned_cols=28  Identities=25%  Similarity=0.644  Sum_probs=25.3

Q ss_pred             ceeccccccccCCHHHHHHHhcChhHHH
Q 041577          154 EWSCALCQVSAPTERGLDEHLQGRKHKA  181 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~GkkH~~  181 (237)
                      .|.|..|+..|-....|.-||+.+-|.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            3789999999999999999999998853

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.039  Score=32.74  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|++|+..|+....|..|+.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHcc
Confidence            47999999999999999999975

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.029  Score=31.86  Aligned_cols=22  Identities=18%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|.|.+|+..|+..+.|..|++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            5889999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.052  Score=32.28  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|.+|..+|+..+.|..|++
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             cCeEeCCCCCEecCHHHHHHHHh
Confidence            57999999999999999999984

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.039  Score=34.84  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             eeccccccccCCHHHHHHHhcChhHHHHHHhhhhc
Q 041577          155 WSCALCQVSAPTERGLDEHLQGRKHKAKVAGLLRD  189 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~GkkH~~~~~~~~~~  189 (237)
                      --|.+|+|..++....+.|+-.++|.++|+..-..
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v~~   41 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVGS   41 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCS
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHHHHh
Confidence            35999999999999999999999999999876543

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.065  Score=32.37  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|++|+..|+....|..|++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCc
Confidence            57999999999999999999975

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.039  Score=34.84  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=28.9

Q ss_pred             eccccccccCCHHHHHHHhcChhhHHHHHHH
Q 041577           36 SCVLCQVSATTERDLDVHLQGKKHKAKEKLL   66 (237)
Q Consensus        36 ~C~vC~Vs~tSe~~l~~Hl~GkKHk~k~~~l   66 (237)
                      -|.+|+|..++....++|+--++|.++++..
T Consensus         8 eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~   38 (48)
T d2yrka1           8 ECTLCGVKYSARLSIRDHIFSKQHISKVRET   38 (48)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             cCcccceeeeeecchHhhhhhHHHHHHHHHH
Confidence            4999999999999999999999999999853

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.075  Score=31.37  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|.+|+.+|+..+.|..|++
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhCc
Confidence            47999999999999999999984

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.089  Score=30.60  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|..|+.+|+..+.|..|++
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCCCEeCchHHhHhhcc
Confidence            57999999999999999999974

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.75  E-value=0.14  Score=29.71  Aligned_cols=24  Identities=21%  Similarity=0.594  Sum_probs=21.0

Q ss_pred             CCCceeccccccccCCHHHHHHHh
Q 041577           31 KSKEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        31 k~~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      |...+.|.-|.|.|.|.+.|+.|.
T Consensus         5 kparf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cccceeccccceeecChhHHHhhh
Confidence            445678999999999999999995

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.12  Score=28.65  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577          154 EWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .|-|+.|+..|+..+.|..|.+
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCcc
Confidence            5889999999999999999964

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.13  Score=30.54  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=21.9

Q ss_pred             CCceeccccccccCCHHHHHHHhc
Q 041577          152 PKEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       152 ~~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      .+.|-|+.|+.+|+..+.|..|.+
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCEecCCCCceeeCHHHHHHhCc
Confidence            357999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.25  E-value=0.21  Score=28.36  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=20.2

Q ss_pred             ceeccc--cccccCCHHHHHHHhc
Q 041577          154 EWSCAL--CQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~l--C~v~~~s~~~l~~Hl~  175 (237)
                      .|.|..  |+..|+..+.|..|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcC
Confidence            588999  9999999999999984

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.88  E-value=0.23  Score=28.10  Aligned_cols=22  Identities=18%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             ceeccc--cccccCCHHHHHHHhc
Q 041577          154 EWSCAL--CQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~l--C~v~~~s~~~l~~Hl~  175 (237)
                      .|.|+.  |+.+|+..+.|..|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVR   25 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCcccc
Confidence            588988  9999999999999984

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.26  Score=27.40  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             eeccccccccCCHHHHHHHhcC
Q 041577          155 WSCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       155 ~~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      |.|+.|++.|--.+.|+-|++.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHHH
Confidence            6899999999999999999863

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.31  E-value=0.29  Score=28.65  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|.+|+..|+....|..|+.
T Consensus         7 Py~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           7 PFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             cccCCCCCCcccChHHHHHHcc
Confidence            4679999999999999999973

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.61  E-value=0.26  Score=28.31  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             Cceeccc--cccccCCHHHHHHHhc
Q 041577          153 KEWSCAL--CQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~l--C~v~~~s~~~l~~Hl~  175 (237)
                      +.|.|..  |+..|+..+.|..|++
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r   26 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhh
Confidence            3689999  9999999999999975

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=83.01  E-value=0.38  Score=26.86  Aligned_cols=22  Identities=18%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|++|+-+|+...+|..|..
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            4679999999999999999973

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.55  E-value=0.33  Score=30.52  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.8

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577          153 KEWSCALCQVSAPTERGLDEHL  174 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl  174 (237)
                      ..|.|.+|...|+.+..|.+|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HE   26 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHE   26 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhH
Confidence            3689999999999999999884

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=0.28  Score=30.51  Aligned_cols=23  Identities=17%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             CceeccccccccCCHHHHHHHhc
Q 041577          153 KEWSCALCQVSAPTERGLDEHLQ  175 (237)
Q Consensus       153 ~~~~C~lC~v~~~s~~~l~~Hl~  175 (237)
                      ..|.|.+|+..|+..+.|..|++
T Consensus        29 kpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          29 RPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHT
T ss_pred             cCCcCCCcCCEecCHHHHHHHHh
Confidence            46999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.52  E-value=0.44  Score=26.72  Aligned_cols=22  Identities=18%  Similarity=0.619  Sum_probs=20.1

Q ss_pred             ceeccc--cccccCCHHHHHHHhc
Q 041577          154 EWSCAL--CQVSAPTERGLDEHLQ  175 (237)
Q Consensus       154 ~~~C~l--C~v~~~s~~~l~~Hl~  175 (237)
                      .|.|..  |+..|+..+.|..|++
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r   25 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIR   25 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTH
T ss_pred             CeECCCCCCCcEECchhHhhhhcC
Confidence            588988  9999999999999974

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.50  E-value=0.47  Score=26.33  Aligned_cols=22  Identities=23%  Similarity=0.664  Sum_probs=19.1

Q ss_pred             CceeccccccccCCHHHHHHHh
Q 041577           33 KEWSCVLCQVSATTERDLDVHL   54 (237)
Q Consensus        33 ~~~~C~vC~Vs~tSe~~l~~Hl   54 (237)
                      +.++|++|+-.|...-.|..|.
T Consensus         3 qvftcs~cqe~f~rrmelr~hm   24 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHM   24 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             ceEEeHHHHHHHHHHHhheeee
Confidence            5789999999999888887775

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.39  E-value=0.45  Score=27.81  Aligned_cols=22  Identities=18%  Similarity=0.623  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHHhc
Q 041577           34 EWSCVLCQVSATTERDLDVHLQ   55 (237)
Q Consensus        34 ~~~C~vC~Vs~tSe~~l~~Hl~   55 (237)
                      .+.|++|+.+|+....|..|+.
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CEeCCCCcccccchHHHHHHcc
Confidence            4779999999999999999963

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.16  E-value=0.61  Score=25.13  Aligned_cols=21  Identities=19%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             eccccccccCCHHHHHHHhcC
Q 041577          156 SCALCQVSAPTERGLDEHLQG  176 (237)
Q Consensus       156 ~C~lC~v~~~s~~~l~~Hl~G  176 (237)
                      -|++|+.-|.-...|.+|++.
T Consensus         3 kc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGG
T ss_pred             ccchhhhHhcchhHHHHHhhc
Confidence            599999999999999999874