Citrus Sinensis ID: 041579

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
METAVDKKNVYGGSLPVENVQALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDEDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLFVASKLDGKNLLSHVKLEP
cccHHccccccccccccccHHHHHcccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEccccccccccccccEEEEccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEccccccEEEEEEEEcccccccEEccccccccccccccccHHHHHHHHHHcccccccccccccccc
ccccccHHcccccccccccHHHHHHccccccHHcEccccccccccccccccccEEEHHHHccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEEEEccccccHHHHEEEEEcccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEcccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccHHHHHHHHHHHccccccHHHHEEccc
metavdkknvyggslpveNVQALAsnskeipsryirpelddeqvladgslhipvidmsklqdddeDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKlpleekmacaqlpnsiegygqafvvskdqkldwgdmlflltqpanirttslwptiptsLATIEEYSLELQKVTIFLLKLMAKnlgiepgklaslFEDGIqgirmnyyppyaqanrvigltphsdSVALTLLVQVNQvqglqvkkygkwvpvkpipgafiiNIGDIIEimsngeyksiehravvnpekerlsvaafdspnmnttigplpnsvedraiyknITHEEFIKLFVASkldgknllshvklep
metavdkknvyggslpvenvQALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDEDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTqpanirttslwPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVqglqvkkygkwvpvkpipGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSvaafdspnmnttigplpnsvEDRAIYKNITHEEFIKLFVaskldgknllshvklep
METAVDKKNVYGGSLPVENVQALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDEDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVAltllvqvnqvqglqvKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLFVASKLDGKNLLSHVKLEP
*******************************************VLADGSLHIPVIDM*********ELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVV***********************L*NSVEDRAIYKNITHEEFIKLFVASKLDGKNL********
****************V**VQALAS**KEIPSRYIR***************IPVIDMSKLQDDDEDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMA**Q*****EGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLFVASKLDGKNLLSHVKLEP
METAVDKKNVYGGSLPVENVQALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDEDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLFVASKLDGKNLLSHVKLEP
*************SLPVENVQALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDEDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLFVASKLDGKNLLSHVKLEP
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METAVDKKNVYGGSLPVENVQALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDEDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLFVASKLDGKNLLSHVKLEP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
A2A1A0352 S-norcoclaurine synthase N/A no 0.960 0.960 0.559 1e-101
Q39224358 Protein SRG1 OS=Arabidops yes no 0.960 0.944 0.469 5e-87
D4N501364 Probable 2-oxoglutarate/F N/A no 0.988 0.956 0.428 5e-77
D4N500364 Thebaine 6-O-demethylase N/A no 0.960 0.928 0.407 8e-73
D4N502360 Codeine O-demethylase OS= N/A no 0.988 0.966 0.403 2e-72
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.897 0.937 0.364 5e-47
Q07512348 Flavonol synthase/flavano N/A no 0.835 0.844 0.394 7e-47
Q9M547334 Flavonol synthase/flavano N/A no 0.863 0.910 0.385 1e-46
Q41452349 Flavonol synthase/flavano N/A no 0.849 0.856 0.383 2e-46
Q96323356 Leucoanthocyanidin dioxyg no no 0.892 0.882 0.363 2e-46
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/345 (55%), Positives = 242/345 (70%), Gaps = 7/345 (2%)

Query: 12  GGSLPVENVQALASNS-KEIPSRYIRPELD-DEQVLADGSLHIPVIDMSKLQDDDE--DE 67
           GGSLPVENVQ LA    K +P+RY+RPEL+ D+ V  D SL IPVID+S+L D     DE
Sbjct: 9   GGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSLEIPVIDLSRLLDQQYACDE 68

Query: 68  LAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQA 127
           LA+FH AC + GF QLINHGV E+ IEKMK D E+FF+LP +EK A  QLPN +EGYGQA
Sbjct: 69  LAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQA 128

Query: 128 FVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLA-TIEEYSLELQKVTIFLLKLMA 186
           FV S++QKLDW DM FL+T+P   R    WPT PTS   T+E+YS+ELQKV + L  +MA
Sbjct: 129 FVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMA 188

Query: 187 KNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQ 246
           KNLG+E   L       +        P  +     +GL+PHSD+  LTLL+QVN+V GL 
Sbjct: 189 KNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLH 247

Query: 247 VKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMN 306
           +KK  KWVP+KPI GAF++NIGD+IEIMSNG YKSIEHRAV+N +KERLS+AAF  P   
Sbjct: 248 IKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYG 307

Query: 307 TTIGPLPNSVEDRAI-YKNITHEEFIKLFVASKLDGKNLLSHVKL 350
           T IGPLP+ V++  + YK I +E+++      KLDGK+LL  +KL
Sbjct: 308 TKIGPLPDLVKENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352
Involved in the biosynthesis of the common precursor of all benzylisoquinoline alkaloids such as morphine, sanguinarine, codeine or berberine. Condenses dopamine and phenylacetaldehyde, 3,4-dihydrophenylacetaldehyde or 4-hydroxyphenylacetaldehyde.
Coptis japonica (taxid: 3442)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 7EC: 8
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q41452|FLS_SOLTU Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
255573431359 Flavonol synthase/flavanone 3-hydroxylas 0.994 0.974 0.663 1e-133
225427352355 PREDICTED: S-norcoclaurine synthase 1-li 0.963 0.954 0.673 1e-130
225427338353 PREDICTED: S-norcoclaurine synthase 1 [V 0.963 0.960 0.661 1e-128
225427354349 PREDICTED: S-norcoclaurine synthase 1 [V 0.960 0.968 0.661 1e-127
359474495373 PREDICTED: S-norcoclaurine synthase 1-li 0.991 0.935 0.623 1e-123
147788192344 hypothetical protein VITISV_016336 [Viti 0.960 0.982 0.631 1e-120
359474498353 PREDICTED: S-norcoclaurine synthase 1-li 0.963 0.960 0.626 1e-118
297742175 684 unnamed protein product [Vitis vinifera] 0.946 0.486 0.599 1e-115
359474493393 PREDICTED: LOW QUALITY PROTEIN: S-norcoc 0.963 0.862 0.587 1e-112
225427346352 PREDICTED: S-norcoclaurine synthase 1 [V 0.960 0.960 0.606 1e-111
>gi|255573431|ref|XP_002527641.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223532946|gb|EEF34712.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/357 (66%), Positives = 286/357 (80%), Gaps = 7/357 (1%)

Query: 1   METAVDKKNVYGGSLPVENVQALAS-NSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSK 59
           ME     KN +GGSLPVENVQAL+S N KE+P RYIRPEL+ ++   D SL IPVIDMSK
Sbjct: 1   MENKHGIKN-FGGSLPVENVQALSSKNLKEVPIRYIRPELEFDEFSMDESLQIPVIDMSK 59

Query: 60  LQDDDE---DELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQ 116
           L++D     DELA+ H+AC+  GF QLINHGV E+ +E MK DI+EFFKLP EEKMA AQ
Sbjct: 60  LKEDQSSHNDELAQLHIACRNWGFFQLINHGVSEEVMENMKMDIQEFFKLPFEEKMAFAQ 119

Query: 117 LPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLA-TIEEYSLELQ 175
           LPN+IEGYGQAFVVS +QKLDWGDMLFLL  PA+ R    WPT PTS   T ++YS ELQ
Sbjct: 120 LPNNIEGYGQAFVVSDEQKLDWGDMLFLLPLPASSRKMRFWPTNPTSFGETFDKYSSELQ 179

Query: 176 KVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTL 235
           ++ + +L+LMA+NLGI+P  +A++FEDG+QGIRMNYYPP  QAN+VIGLT HSD+  LTL
Sbjct: 180 RIAVCILRLMARNLGIDPEDVATMFEDGVQGIRMNYYPPCIQANKVIGLTTHSDATGLTL 239

Query: 236 LVQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERL 295
           L QVN+VQGLQ+KK G+WVP+ PIPGAFIIN+GDIIEIMSNGEY+SIEHRAVVNPEKERL
Sbjct: 240 LTQVNEVQGLQIKKDGRWVPITPIPGAFIINVGDIIEIMSNGEYRSIEHRAVVNPEKERL 299

Query: 296 SVAAFDSPNMNTTIGPLPNSVEDRA-IYKNITHEEFIKLFVASKLDGKNLLSHVKLE 351
           S+AAF +P++ T IGPL + V+ +   YK ITHEEF+KL V SKLDGK L+ H+K+ 
Sbjct: 300 SIAAFHNPDIKTMIGPLGDLVKGKKPNYKTITHEEFVKLVVTSKLDGKLLVGHMKVR 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225427352|ref|XP_002279610.1| PREDICTED: S-norcoclaurine synthase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427338|ref|XP_002279355.1| PREDICTED: S-norcoclaurine synthase 1 [Vitis vinifera] gi|297742171|emb|CBI33958.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427354|ref|XP_002279625.1| PREDICTED: S-norcoclaurine synthase 1 [Vitis vinifera] gi|297742182|emb|CBI33969.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474495|ref|XP_002282515.2| PREDICTED: S-norcoclaurine synthase 1-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147788192|emb|CAN69330.1| hypothetical protein VITISV_016336 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474498|ref|XP_002279422.2| PREDICTED: S-norcoclaurine synthase 1-like [Vitis vinifera] gi|297742176|emb|CBI33963.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742175|emb|CBI33962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474493|ref|XP_003631481.1| PREDICTED: LOW QUALITY PROTEIN: S-norcoclaurine synthase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427346|ref|XP_002279404.1| PREDICTED: S-norcoclaurine synthase 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.957 0.941 0.442 6.5e-74
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.982 0.971 0.418 1.3e-70
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.974 0.971 0.418 7e-70
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.980 0.955 0.404 8e-69
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.923 0.912 0.412 2.2e-66
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.948 0.917 0.398 5.8e-66
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.911 0.884 0.354 2.7e-52
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.948 0.946 0.353 3.5e-52
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.940 0.892 0.341 7.4e-50
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.875 0.885 0.355 7.7e-48
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 154/348 (44%), Positives = 216/348 (62%)

Query:    14 SLPVENVQALASNSK--EIPSRYIRPELDDEQVLADGS--LHIPVIDMSKLQDDD--EDE 67
             S+ V +VQ +        +P RY+R + D  +V  D    + IP+IDM +L      + E
Sbjct:    11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSE 70

Query:    68 LAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQA 127
             + +   ACKE GF QL+NHG+    ++K+K++I++FF LP+EEK    Q P+ IEG+GQA
Sbjct:    71 VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA 130

Query:   128 FVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLA-TIEEYSLELQKVTIFLLKLMA 186
             FVVS+DQKLDW D+ F   QP  +R   L+P +P     T+E YS E+Q V   L+  MA
Sbjct:   131 FVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMA 190

Query:   187 KNLGIEPGKLASLFED--GIQGIRMNYYPPYAQANRVIGLTPHSDSVAXXXXXXXXXXXX 244
             + L I+P +L  LF+D   +Q +RMNYYPP  Q ++VIGLTPHSDSV             
Sbjct:   191 RALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEG 250

Query:   245 XXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPN 304
                KK GKWVPVKP+P AFI+NIGD++EI++NG Y+SIEHR VVN EKERLS+A F +  
Sbjct:   251 LQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVG 310

Query:   305 MNTTIGPLPNSVEDRAI--YKNITHEEFIKLFVASKLDGKNLLSHVKL 350
             M   +GP  + VE + +  +K +T +E+     +  LDGK  L  +++
Sbjct:   311 MYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2A1A0NCS1_COPJA4, ., 2, ., 1, ., 7, 80.55940.96020.9602N/Ano
Q39224SRG1_ARATHNo assigned EC number0.46990.96020.9441yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.9LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015839001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (353 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-121
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-113
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-97
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-72
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-70
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-69
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-68
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-62
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-59
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-59
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-58
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-50
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-49
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-47
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 6e-45
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 9e-44
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-43
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-43
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-39
PLN02997325 PLN02997, PLN02997, flavonol synthase 7e-38
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 3e-37
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-35
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-35
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-34
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-31
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-26
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-21
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-07
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  354 bits (910), Expect = e-121
 Identities = 163/347 (46%), Positives = 229/347 (65%), Gaps = 10/347 (2%)

Query: 14  SLPVENVQALA--SNSKEIPSRYIRPELDDEQVLADGSL--HIPVIDMSKLQDDD--EDE 67
           S+ V +VQ +        +P RY+R + D  ++  D  L   IP+IDM +L      + E
Sbjct: 11  SIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSE 70

Query: 68  LAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQA 127
           + +   ACKE GF QL+NHG+    ++K+K++I++FF LP+EEK    Q P  IEG+GQA
Sbjct: 71  VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA 130

Query: 128 FVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLA-TIEEYSLELQKVTIFLLKLMA 186
           FVVS+DQKLDW DM FL  QP  +R   L+P +P     T+E YS E++ +   L   MA
Sbjct: 131 FVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMA 190

Query: 187 KNLGIEPGKLASLFEDGI-QGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGL 245
             L I+P ++  LF+D + Q IRMNYYPP  Q ++VIGLTPHSD+V LT+L+QVN+V+GL
Sbjct: 191 SALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGL 250

Query: 246 QVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNM 305
           Q+KK GKWV VKP+P A ++N+GDI+EI++NG Y+SIEHR VVN EKERLSVA F +  M
Sbjct: 251 QIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGM 310

Query: 306 NTTIGPLPNSVE--DRAIYKNITHEEFIKLFVASKLDGKNLLSHVKL 350
              IGP  + VE    A++K++T +E+     + +LDGK  L  +++
Sbjct: 311 GKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.91
PLN03176120 flavanone-3-hydroxylase; Provisional 99.87
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.42
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.94
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.31
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 88.11
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 84.47
TIGR02466201 conserved hypothetical protein. This family consis 84.25
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 81.32
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=2.3e-84  Score=618.68  Aligned_cols=334  Identities=48%  Similarity=0.865  Sum_probs=300.8

Q ss_pred             ccchHHHHhC-C-CCCCCcccCCCCCCcccccC--CCCCCceEeCCCCCCC--CHHHHHHHHHHHHhcCeEEEeecCCCH
Q 041579           17 VENVQALASN-S-KEIPSRYIRPELDDEQVLAD--GSLHIPVIDMSKLQDD--DEDELAEFHLACKESGFLQLINHGVPE   90 (352)
Q Consensus        17 ~~~v~~~~~~-~-~~~p~~y~~p~~~~~~~~~~--~~~~iPvIDls~l~~~--~~~~~~~l~~A~~~~GFF~l~nhGi~~   90 (352)
                      .+.|+.|+.. + ++||+.|++|++++|.....  ...+||||||+.+.++  +.+++++|++||++||||||+||||+.
T Consensus        14 ~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~   93 (357)
T PLN02216         14 VPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDS   93 (357)
T ss_pred             chhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCH
Confidence            4669999876 6 88999999999998753211  1257999999998655  356889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHhhhcCCCCCcccccccccccCCCccCcccccccccCCCcccCCCCCCCCCCcH-HHHHH
Q 041579           91 KAIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSL-ATIEE  169 (352)
Q Consensus        91 ~l~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~f-~~~~~  169 (352)
                      ++++++++++++||+||.|+|+++...++..+||+........+..||+|.+++...|.....+|.||+.++.| +.+++
T Consensus        94 ~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~  173 (357)
T PLN02216         94 SFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLET  173 (357)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHH
Confidence            99999999999999999999999976555678997665444456679999998876666566789999989999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhHHhhhcC-ccceeeeeecCCCCCCCCcccccCcccCCceeEEEecCCCCCceEE
Q 041579          170 YSLELQKVTIFLLKLMAKNLGIEPGKLASLFED-GIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQVNQVQGLQVK  248 (352)
Q Consensus       170 y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~-~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqv~  248 (352)
                      |+++|.+|+.+||++|+++||+++++|.+.+.. ..+.||++|||||+.++..+|+++|||+|+||||+|+++++||||+
T Consensus       174 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~  253 (357)
T PLN02216        174 YSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIK  253 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEE
Confidence            999999999999999999999999999998865 4568999999999999889999999999999999996479999999


Q ss_pred             eCCeEEEccCCCCeEEEEecchhhhhhcCcccccccccccCCCCCcceeeeeeCCCCCcEEecCCCcc-cC-CCCCCccc
Q 041579          249 KYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTIGPLPNSV-ED-RAIYKNIT  326 (352)
Q Consensus       249 ~~g~W~~V~p~~g~~vVnvGd~l~~~SnG~~~s~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~~~-~~-p~~y~~~~  326 (352)
                      ++|+|++|+|+||++|||+||+||+||||+|||++|||+.++.++|||++||++|+.|++|.|+++|+ ++ |++|++++
T Consensus       254 ~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t  333 (357)
T PLN02216        254 KDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLT  333 (357)
T ss_pred             ECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcC
Confidence            99999999999999999999999999999999999999988888999999999999999999999999 77 99999999


Q ss_pred             HHHHHHHHHHccCCCCcccccccC
Q 041579          327 HEEFIKLFVASKLDGKNLLSHVKL  350 (352)
Q Consensus       327 ~~ey~~~~~~~~~~~~~~~~~~~~  350 (352)
                      |+||++.++++.+.+++.++.+||
T Consensus       334 ~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        334 TKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             HHHHHHHHHhcccCCcchhhhhcC
Confidence            999999999999999999998886

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-41
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-41
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-40
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-27
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-12
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 3e-05
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 174/344 (50%), Gaps = 30/344 (8%)
Query: 17  VENVQALA-SNSKEIPSRYIRP--ELDD------EQVLADGSLHIPVIDMSKLQDDDE-- 65
           VE V++LA S    IP  YIRP  EL+       E+   DG   +P ID+  ++ DDE  
Sbjct: 3   VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKI 61
Query: 66  --DELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACA--QLPNSI 121
             + + E   A  + G + LINHG+P   +E++K   EEFF L +EEK   A  Q    I
Sbjct: 62  RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKI 121
Query: 122 EGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTS-LATIEEYSLELQKVTIF 180
           +GYG     +   +L+W D  F L  P   R  S+WP  P+  +    EY+  L+ +   
Sbjct: 122 QGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 181
Query: 181 LLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPYAQANRVIGLTPHSDSVAXXXXX 237
           + K ++  LG+EP +L       E+ +  +++NYYP   Q    +G+  H+D  A     
Sbjct: 182 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 241
Query: 238 XXXXXXXXXXKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSV 297
                      + GKWV  K +P + +++IGD +EI+SNG+YKSI HR +VN EK R+S 
Sbjct: 242 HNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 300
Query: 298 AAF-DSPNMNTTIGPLPN--SVED------RAIYKNITHEEFIK 332
           A F + P     + PLP   SVE       R   ++I H+ F K
Sbjct: 301 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGK 344
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-148
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-138
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-90
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-84
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 9e-77
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 4e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  422 bits (1086), Expect = e-148
 Identities = 120/359 (33%), Positives = 182/359 (50%), Gaps = 26/359 (7%)

Query: 15  LPVENVQALASNS-KEIPSRYIRPELD-------DEQVLADGSLHIPVIDMSKLQDDD-- 64
           + VE V++LA +    IP  YIRP+ +         +   +    +P ID+  ++ DD  
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 65  --EDELAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACA--QLPNS 120
             E+ + E   A  + G + LINHG+P   +E++K   EEFF L +EEK   A  Q    
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 121 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSL-ATIEEYSLELQKVTI 179
           I+GYG     +   +L+W D  F L  P   R  S+WP  P+       EY+  L+ +  
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181

Query: 180 FLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLL 236
            + K ++  LG+EP +L       E+ +  +++NYYP   Q    +G+  H+D  ALT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241

Query: 237 VQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLS 296
           +  N V GLQ+   GKWV  K +P + +++IGD +EI+SNG+YKSI HR +VN EK R+S
Sbjct: 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300

Query: 297 VAAFDSPNMNTT-IGPLPNSVEDR--AIYKNITHEEFIKLFVASKLDGKNLLSHVKLEP 352
            A F  P  +   + PLP  V     A +   T  + I+     KL GK     V  + 
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKEQEELVSEKN 355
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.37
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.6
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 90.18
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.04
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 84.9
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 83.48
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 81.32
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-83  Score=609.75  Aligned_cols=327  Identities=35%  Similarity=0.617  Sum_probs=294.1

Q ss_pred             CccchHHHHhCC-CCCCCcccCCCCCCccccc---C----CCCCCceEeCCCCCCCC----HHHHHHHHHHHHhcCeEEE
Q 041579           16 PVENVQALASNS-KEIPSRYIRPELDDEQVLA---D----GSLHIPVIDMSKLQDDD----EDELAEFHLACKESGFLQL   83 (352)
Q Consensus        16 ~~~~v~~~~~~~-~~~p~~y~~p~~~~~~~~~---~----~~~~iPvIDls~l~~~~----~~~~~~l~~A~~~~GFF~l   83 (352)
                      +.++||+|++++ .+||+.|++|+++++....   .    .+.+||||||+.+.+++    .+++++|.+||++||||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            356799999987 8999999999888775321   0    12469999999987542    4478999999999999999


Q ss_pred             eecCCCHHHHHHHHHHHHHHhcCCHHHHhhhcCCC--CCcccccccccccCCCccCcccccccccCCCcccCCCCCCCCC
Q 041579           84 INHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQLP--NSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIP  161 (352)
Q Consensus        84 ~nhGi~~~l~~~~~~~~~~fF~lp~eeK~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~  161 (352)
                      +||||+.++++++++.+++||+||.|+|+++....  ..++||+........+..||+|+|++...|......|.||+.+
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence            99999999999999999999999999999997643  4678998765555556789999999887665445678999999


Q ss_pred             CcH-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhc---CccceeeeeecCCCCCCCCcccccCcccCCceeEEE
Q 041579          162 TSL-ATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFE---DGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLV  237 (352)
Q Consensus       162 ~~f-~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  237 (352)
                      ++| +.+++|+++|.+++.+||++|+++||+++++|.+.+.   .+.+.||++|||||++++..+|+++|||+|+||||+
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~  242 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  242 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEE
Confidence            999 9999999999999999999999999999999999886   477899999999999988899999999999999999


Q ss_pred             ecCCCCCceEEeCCeEEEccCCCCeEEEEecchhhhhhcCcccccccccccCCCCCcceeeeeeCCCCCc-EEecCCCcc
Q 041579          238 QVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNT-TIGPLPNSV  316 (352)
Q Consensus       238 q~~~~~GLqv~~~g~W~~V~p~~g~~vVnvGd~l~~~SnG~~~s~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~p~~~~~  316 (352)
                      || .++||||+++|+|++|+|+||+|||||||+||+||||+|||+.|||+++++.+|||++||++|+.|+ +|.|+++++
T Consensus       243 qd-~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~  321 (356)
T 1gp6_A          243 HN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  321 (356)
T ss_dssp             EC-SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             Ec-CCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhc
Confidence            97 7999999999999999999999999999999999999999999999998888999999999999999 999999999


Q ss_pred             -cC-CCCCCcccHHHHHHHHHHccCCCCc
Q 041579          317 -ED-RAIYKNITHEEFIKLFVASKLDGKN  343 (352)
Q Consensus       317 -~~-p~~y~~~~~~ey~~~~~~~~~~~~~  343 (352)
                       ++ |++|+++||+||++.+++++++|+.
T Consensus       322 ~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          322 SVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCccCCCccHHHHHHHHHHhccCcch
Confidence             77 9999999999999999988776654
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-73
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-65
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-58
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-45
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  229 bits (585), Expect = 2e-73
 Identities = 120/353 (33%), Positives = 179/353 (50%), Gaps = 26/353 (7%)

Query: 15  LPVENVQALA-SNSKEIPSRYIRPELD-------DEQVLADGSLHIPVIDMSKLQDDDED 66
           + VE V++LA S    IP  YIRP+ +         +   +    +P ID+  ++ DDE 
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60

Query: 67  E----LAEFHLACKESGFLQLINHGVPEKAIEKMKTDIEEFFKLPLEEKMACA--QLPNS 120
                + E   A  + G + LINHG+P   +E++K   EEFF L +EEK   A  Q    
Sbjct: 61  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120

Query: 121 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSL-ATIEEYSLELQKVTI 179
           I+GYG     +   +L+W D  F L  P   R  S+WP  P+       EY+  L+ +  
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180

Query: 180 FLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLL 236
            + K ++  LG+EP +L       E+ +  +++NYYP   Q    +G+  H+D  ALT +
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 240

Query: 237 VQVNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLS 296
           +  N V GLQ+   GKWV  K +P + +++IGD +EI+SNG+YKSI HR +VN EK R+S
Sbjct: 241 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299

Query: 297 VAAFDSPNMNTTI-GPLPNSVEDR--AIYKNITHEEFIKLFVASKLDGKNLLS 346
            A F  P  +  +  PLP  V     A +   T  + I+     KL GK    
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKEQEE 348
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.36
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.1e-78  Score=575.38  Aligned_cols=320  Identities=35%  Similarity=0.626  Sum_probs=282.4

Q ss_pred             ccchHHHHhCC-CCCCCcccCCCCCCccccc-------CCCCCCceEeCCCCCCC----CHHHHHHHHHHHHhcCeEEEe
Q 041579           17 VENVQALASNS-KEIPSRYIRPELDDEQVLA-------DGSLHIPVIDMSKLQDD----DEDELAEFHLACKESGFLQLI   84 (352)
Q Consensus        17 ~~~v~~~~~~~-~~~p~~y~~p~~~~~~~~~-------~~~~~iPvIDls~l~~~----~~~~~~~l~~A~~~~GFF~l~   84 (352)
                      +..||+|+++| ++||+.|++|+.++|....       ....+||||||+.+.++    +.+++++|++||+++|||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            46799999999 9999999999999887521       35668999999999766    346788999999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHHHhcCCHHHHhhhcCC--CCCcccccccccccCCCccCcccccccccCCCcccCCCCCCCCCC
Q 041579           85 NHGVPEKAIEKMKTDIEEFFKLPLEEKMACAQL--PNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPT  162 (352)
Q Consensus        85 nhGi~~~l~~~~~~~~~~fF~lp~eeK~~~~~~--~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~  162 (352)
                      ||||+.++++++++++++||+||.|+|+++...  .+.+.||+...........+|.+.+.....+......|.||+.++
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            999999999999999999999999999999752  233455555444444555677776655545555567789999999


Q ss_pred             cH-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhhc---CccceeeeeecCCCCCCCCcccccCcccCCceeEEEe
Q 041579          163 SL-ATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFE---DGIQGIRMNYYPPYAQANRVIGLTPHSDSVALTLLVQ  238 (352)
Q Consensus       163 ~f-~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  238 (352)
                      .| +.+++|+++|.+++++|+++++++||+++++|.+.+.   ...+.||++|||+++.+...+|+++|||+|+||||+|
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence            99 9999999999999999999999999999999988773   4556899999999999889999999999999999999


Q ss_pred             cCCCCCceEEeCCeEEEccCCCCeEEEEecchhhhhhcCcccccccccccCCCCCcceeeeeeCCCCCcEE-ecCCCcc-
Q 041579          239 VNQVQGLQVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFDSPNMNTTI-GPLPNSV-  316 (352)
Q Consensus       239 ~~~~~GLqv~~~g~W~~V~p~~g~~vVnvGd~l~~~SnG~~~s~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~p~~~~~-  316 (352)
                      + .++||||+.+|+|++|+|.+|++|||+||+||+||||+|+||+|||+.+++++||||+||++|+.|++| .|+++|+ 
T Consensus       243 ~-~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~  321 (349)
T d1gp6a_         243 N-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  321 (349)
T ss_dssp             C-SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             c-CCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcC
Confidence            7 999999999999999999999999999999999999999999999999988999999999999999865 8999999 


Q ss_pred             cC-CCCCCcccHHHHHHHHHHc
Q 041579          317 ED-RAIYKNITHEEFIKLFVAS  337 (352)
Q Consensus       317 ~~-p~~y~~~~~~ey~~~~~~~  337 (352)
                      ++ |++|++||++||++.++..
T Consensus       322 ~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         322 VESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             SSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHhc
Confidence            77 9999999999999998743
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure