Citrus Sinensis ID: 041585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
PGEEEHESRIGVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDHADVAASRS
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccccccEEEEEEcccccccccccEEEEHHHHHHcccccccccccccccccccccEEEEEEcccccEEEEEEEEEccccEEEEcccccHHHHHHcccccccEEEEEEEccccEEEEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccccEEccccccccEEEEEEcHcHccccccEEEcHHHHHHHccHcccHHHHHHHccccccEEEEEEEcccccEEEEEEEEEcccccEEEEccccHHHHHHcccccccEEEEEEcccccEEEEEEEEccccccEEEcccccEEEccc
Coil and Loop (DISEMBL)
pgeeehesrigvstkldlftypwsitkiltrsdlgHLSRLLVQTRLAEryvmpfldeasrsevignpeglrvsvwdcdtnsmhRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYsrfnfsilkrapaptiivqdhadvaasrs
Flexible Loop (DISEMBL)
pgeeehesrigvstkldlftypWSITKiltrsdlghlSRLLVQTRLAERYVMpfldeasrsevignpeGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKrapaptiivqdhadvaasrs
Low Complexity Region (SEG)
PGEEEHESRIGVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDHADVAASRS
Disordered region (IsUnstruct)
**********GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQD*********
Disordered Region (DISOPRED)
*****************LFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEA******GNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSIL*********************
Disordered Region (DISEMBL)
**********GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDHADVAASRS
Disordered Region (DISPRO)
*GEEEHESRIGVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDH*DV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PGEEEHESRIGVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTIIVQDHADVAASRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
O23659	326	B3 domain-containing prot	yes	no	0.851	0.404	0.377	2e-20
Q9SYL8	487	Putative B3 domain-contai	no	no	0.696	0.221	0.405	6e-14
Q9SY12	310	B3 domain-containing prot	no	no	0.754	0.377	0.322	6e-11
Q7F9W2	316	B3 domain-containing prot	yes	no	0.548	0.268	0.357	2e-07
Q3E922	156	B3 domain-containing prot	no	no	0.722	0.717	0.280	4e-06
Q8LMR9	311	B3 domain-containing prot	yes	no	0.529	0.263	0.369	5e-06
Q9M268	299	B3 domain-containing tran	no	no	0.587	0.304	0.346	7e-06
O82799	310	B3 domain-containing tran	no	no	0.516	0.258	0.355	4e-05
Q9MAN1	358	B3 domain-containing tran	no	no	0.516	0.223	0.344	4e-05
Q9AWS7	317	Putative AP2/ERF and B3 d	no	no	0.580	0.283	0.347	4e-05

>sp|O23659|Y2372_ARATH B3 domain-containing protein At2g33720 OS=Arabidopsis thaliana GN=At2g33720 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)

Query: 5   EHESRIGVSTKLDLFTY--PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSE 62
           + E +  VST+L L T   PW++   +T+S +G+L RL+++    + +++ +L       
Sbjct: 181 KEEEKYYVSTELTLLTVADPWTLKMAMTKSSIGNLYRLVLKASFVDIHILRYL-PLDDQM 239

Query: 63  VIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCW 122
           ++    GL V V+D DT+S+H L  KKWA S+S+VL++ W   FV RR L  GD IGM W
Sbjct: 240 MVKEDSGLAVEVYDHDTDSVHNLALKKWAKSSSFVLVSGWRKCFVDRRGLQVGDVIGMYW 299

Query: 123 DSFYSRFNFSILKRA 137
           D   S+ +F +L R+
Sbjct: 300 DRSESKLHFCVLSRS 314

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYL8|Y1786_ARATH Putative B3 domain-containing protein At1g78640 OS=Arabidopsis thaliana GN=At1g78640 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/116 (40%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 11  GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVM---PFLDEASRSEVIGNP 67
           G     +L  Y W+I K L  SD+ H  RLL+ T  AE ++M   P  D+    E IG  
Sbjct: 143 GTRVLTELPPYTWTIKKTLKESDINHQCRLLLNTTDAENHIMRHLPTDDQKKIQEGIG-- 200

Query: 68  EGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWTADFVRRRELAAGDEIGMCW 122
             + V  +D DT + H +VFK+   TS SYV    W   FV RREL  GD+IG+ W
Sbjct: 201 --VDVKAYDHDTYTEHDMVFKRHVKTSKSYVFNGGWAKAFVGRRELKEGDKIGLFW 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY12|Y4287_ARATH B3 domain-containing protein At4g02870 OS=Arabidopsis thaliana GN=ARF42 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 20  TYPWSITKILTRSDL-GHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCD 78
           T  W+I K L+  D+     RL++Q+     ++   L    + ++I    G+ V+V+D D
Sbjct: 188 TPQWTIKKKLSSYDIRPRCGRLILQSSSFNEHIGRHL---PKDQMIKINVGVNVNVYDYD 244

Query: 79  TNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAP 138
           T ++H L   +      Y L + W  DFVRRR L   DEIG+ WD   SR  F ++ R  
Sbjct: 245 TGTLHEL---RLEYQRQYGLAHGWQEDFVRRRHLKQKDEIGLLWDFSSSRLQFGVISRNT 301

Query: 139 APTI 142
            P +
Sbjct: 302 GPGL 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F9W2|Y4814_ORYSJ B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 27  KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
           K++T SD+G L+RL++  + AE+Y    LD A+      N +GL +S  D  T  + R  
Sbjct: 112 KVVTPSDVGKLNRLVIPKQHAEKYFP--LDSAA------NEKGLLLSFED-RTGKLWRFR 162

Query: 87  FKKWATSNSYVLINHWTADFVRRRELAAGDEIGMC 121
           +  W +S SYV+   W+  FV+ + L AGD +  C
Sbjct: 163 YSYWNSSQSYVMTKGWS-RFVKEKRLDAGDTVSFC 196

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q3E922|Y5680_ARATH B3 domain-containing protein At5g26805 OS=Arabidopsis thaliana GN=At5g26805 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 21  YPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTN 80
           +PW I K LT  ++    +L ++            ++  R++ +     + V   D DTN
Sbjct: 41  FPWEIIKTLTTDEIISKFQLPMEKIRDTMLRHASEEDIYRTKFMSCETNILVK--DLDTN 98

Query: 81  SMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSIL 134
           ++H+    K    N++ L   W  +FV+RR L  G  +GM WD     F FS+L
Sbjct: 99  TIHQGKLWKHPCENNFALRESWIEEFVKRRRLVVGMVVGMYWDFEACMFCFSVL 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LMR9|Y3209_ORYSJ B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 27  KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
           K++T SD+G L+RL++  + AE+Y    LD AS      N +GL +S  D  T    R  
Sbjct: 39  KVVTPSDVGKLNRLVIPKQHAEKYFP--LDAAS------NEKGLLLSFED-RTGKPWRFR 89

Query: 87  FKKWATSNSYVLINHWTADFVRRRELAAGDEI 118
           +  W +S SYV+   W+  FV+ + L AGD +
Sbjct: 90  YSYWNSSQSYVMTKGWS-RFVKEKRLDAGDTV 120

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M268|NGA2_ARATH B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 7/98 (7%)

Query: 27  KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
           K++T SD+G L+RL++  + AERY    LD ++ ++   + +GL ++  D   NS  R  
Sbjct: 25  KVVTPSDVGKLNRLVIPKQHAERYFP--LDNSTTND---SNKGLLLNFEDRSGNSW-RFR 78

Query: 87  FKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDS 124
           +  W +S SYV+   W+  FV+ ++L AGD +    DS
Sbjct: 79  YSYWNSSQSYVMTKGWSR-FVKDKKLDAGDIVSFQRDS 115

Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4.

Arabidopsis thaliana (taxid: 3702)

>sp|O82799|NGA1_ARATH B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 27  KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
           K++T SD+G L+RL++  + AER+    LD +S      N +GL ++  D  T    R  
Sbjct: 37  KVVTPSDVGKLNRLVIPKQHAERFFP--LDSSS------NEKGLLLNFEDL-TGKSWRFR 87

Query: 87  FKKWATSNSYVLINHWTADFVRRRELAAGD 116
           +  W +S SYV+   W+  FV+ ++L AGD
Sbjct: 88  YSYWNSSQSYVMTKGWSR-FVKDKKLDAGD 116

Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAN1|NGA3_ARATH B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 27  KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
           K++T SD+G L+RL++  + AERY    LD ++      N  G  ++  D +   M R  
Sbjct: 58  KVVTPSDVGKLNRLVIPKQHAERYFP--LDSSN------NQNGTLLNFQDRN-GKMWRFR 108

Query: 87  FKKWATSNSYVLINHWTADFVRRRELAAGD 116
           +  W +S SYV+   W+  FV+ ++L AGD
Sbjct: 109 YSYWNSSQSYVMTKGWSR-FVKEKKLDAGD 137

Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AWS7|Y1407_ORYSJ Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 27  KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
           K +T SD+G L+RL+V  + AER+  PF      S+  G  +G+ ++  D D   + R  
Sbjct: 180 KAVTPSDVGKLNRLVVPKQQAERH-FPFPLRRHSSDAAG--KGVLLNFEDGD-GKVWRFR 235

Query: 87  FKKWATSNSYVLINHWTADFVRRRELAAGDEIGMC 121
           +  W +S SYVL   W+  FVR + L  GD +   
Sbjct: 236 YSYWNSSQSYVLTKGWS-RFVREKGLRPGDTVAFS 269

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224079307	188	predicted protein [Populus trichocarpa]	0.877	0.723	0.524	4e-33
357450741	181	B3 domain-containing protein [Medicago t	0.832	0.712	0.538	3e-31
224096928	269	predicted protein [Populus trichocarpa]	0.864	0.498	0.517	8e-30
387848908	174	e1-as protein [Glycine max] gi|387848912	0.793	0.706	0.527	8e-29
387848906	174	E1 protein [Glycine max] gi|387848910|db	0.793	0.706	0.527	8e-29
387848924	133	e1-fs protein [Glycine max]	0.793	0.924	0.527	1e-28
224073053	153	predicted protein [Populus trichocarpa]	0.864	0.875	0.517	3e-28
255583754	251	transcription factor, putative [Ricinus	0.858	0.529	0.443	5e-25
297815220	224	hypothetical protein ARALYDRAFT_347288 [	0.941	0.651	0.428	1e-24
255583752	261	transcription factor, putative [Ricinus	0.748	0.444	0.461	2e-23

>gi|224079307|ref|XP_002305818.1| predicted protein [Populus trichocarpa] gi|222848782|gb|EEE86329.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/143 (52%), Positives = 101/143 (70%), Gaps = 7/143 (4%)

Query: 2   GEEEHESRIGVSTKLDLFTY--PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEAS 59
           G+   ES  GVST L L+ +  P++I K +  SDLG+L RLLV + L E+Y++PFL+   
Sbjct: 45  GDLLEESSRGVSTHLSLYHHYDPFTIKKKMKPSDLGNLCRLLVPSDLVEKYILPFLNTDQ 104

Query: 60  RSEVIGNPE---GLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGD 116
             +V  N E   GL+VSVWD +T SMH+LVFK+W+TS SY+  + WT DFVRRR L  GD
Sbjct: 105 IKQV--NQETNLGLKVSVWDMNTQSMHQLVFKRWSTSRSYIFNDGWTKDFVRRRNLVEGD 162

Query: 117 EIGMCWDSFYSRFNFSILKRAPA 139
           EIG+ WD+++SRFNF++L RA A
Sbjct: 163 EIGLYWDTYHSRFNFNVLSRAAA 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450741|ref|XP_003595647.1| B3 domain-containing protein [Medicago truncatula] gi|355484695|gb|AES65898.1| B3 domain-containing protein [Medicago truncatula]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 83/130 (63%), Gaps = 1/130 (0%)

Query: 11  GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGL 70
            VST L L+  PW I K LT SDLG LSRLL+   L ++ ++P LD    +      EG 
Sbjct: 53  SVSTTLKLYDDPWKIKKSLTESDLGILSRLLLAADLVKKQILPMLD-VDDARAAETEEGS 111

Query: 71  RVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFN 130
            V+VWD +TNSMH LV K+W++S SYVLI  W  DFVRRREL  GDEIG  WD F   FN
Sbjct: 112 PVNVWDMETNSMHELVLKRWSSSKSYVLIGKWNQDFVRRRELKKGDEIGFQWDPFNRAFN 171

Query: 131 FSILKRAPAP 140
           F +LKRA  P
Sbjct: 172 FCVLKRAIPP 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096928|ref|XP_002334655.1| predicted protein [Populus trichocarpa] gi|222874067|gb|EEF11198.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 97/139 (69%), Gaps = 5/139 (3%)

Query: 5   EHESRIGVSTKLDLFTY-PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDE-ASRSE 62
           E  SR GVST+L L+ + P+ I K +  SDLG+L RLLV   L E++++PFL+E  ++  
Sbjct: 126 EERSR-GVSTQLSLYHHDPFEIKKKMKPSDLGNLCRLLVSADLVEKHILPFLNEDQTKQV 184

Query: 63  VIGNPE--GLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGM 120
           +I N E  GL+V VWD DT SMH+LVFK+W+TS SY+  + WT  FV+RR L   DEIG+
Sbjct: 185 IIPNQEINGLKVWVWDIDTGSMHQLVFKRWSTSKSYIFNDGWTKHFVKRRNLRESDEIGL 244

Query: 121 CWDSFYSRFNFSILKRAPA 139
            WD+  SRF+FS+L RA A
Sbjct: 245 YWDNDQSRFHFSVLSRAAA 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387848908|dbj|BAM15646.1| e1-as protein [Glycine max] gi|387848912|dbj|BAM15648.1| e1-as protein [Glycine max] gi|387848916|dbj|BAM15650.1| e1-as protein [Glycine max] gi|387848920|dbj|BAM15652.1| e1-as protein [Glycine max] gi|387848922|dbj|BAM15653.1| e1-as protein [Glycine max]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 6/129 (4%)

Query: 11  GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLD--EASRSEVIGNPE 68
           GVST L L+  PW I K LT SDLG LSRLL+   L ++ ++P L    A  +E  G P 
Sbjct: 46  GVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLGAYHARAAETEGTP- 104

Query: 69  GLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSR 128
              V VWD DT SMH+LV K+W++S SYVLI  W  DFVRRR+L  GDEIG  WD +   
Sbjct: 105 ---VRVWDMDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRDLRKGDEIGFHWDPYNCV 161

Query: 129 FNFSILKRA 137
           FNF +LK+A
Sbjct: 162 FNFCVLKQA 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387848906|dbj|BAM15645.1| E1 protein [Glycine max] gi|387848910|dbj|BAM15647.1| repressive flowering regulator (RFR) [Glycine max] gi|387848914|dbj|BAM15649.1| E1 protein [Glycine max] gi|387848918|dbj|BAM15651.1| E1 protein [Glycine max]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 6/129 (4%)

Query: 11  GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLD--EASRSEVIGNPE 68
           GVST L L+  PW I K LT SDLG LSRLL+   L ++ ++P L    A  +E  G P 
Sbjct: 46  GVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLGAYHARAAETEGTP- 104

Query: 69  GLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSR 128
              V VWD DT SMH+LV K+W++S SYVLI  W  DFVRRR+L  GDEIG  WD +   
Sbjct: 105 ---VRVWDMDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRDLRKGDEIGFHWDPYNCV 161

Query: 129 FNFSILKRA 137
           FNF +LK+A
Sbjct: 162 FNFCVLKQA 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387848924|dbj|BAM15654.1| e1-fs protein [Glycine max]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 6/129 (4%)

Query: 11  GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLD--EASRSEVIGNPE 68
           GVST L L+  PW I K LT SDLG LSRLL+   L ++ ++P L    A  +E  G P 
Sbjct: 5   GVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLGAYHARAAETEGTP- 63

Query: 69  GLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSR 128
              V VWD DT SMH+LV K+W++S SYVLI  W  DFVRRR+L  GDEIG  WD +   
Sbjct: 64  ---VRVWDMDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRDLRKGDEIGFHWDPYNCV 120

Query: 129 FNFSILKRA 137
           FNF +LK+A
Sbjct: 121 FNFCVLKQA 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073053|ref|XP_002303957.1| predicted protein [Populus trichocarpa] gi|222841389|gb|EEE78936.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 95/139 (68%), Gaps = 5/139 (3%)

Query: 5   EHESRIGVSTKLDLFTY-PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEV 63
           E  SR GVST+L L+ + P+ I K +  SDLG+L RLLV   L E++++PFL+E    +V
Sbjct: 12  EERSR-GVSTQLSLYHHDPFEIKKKMKPSDLGNLCRLLVSADLVEKHILPFLNEDQTKQV 70

Query: 64  -IGNPE--GLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGM 120
            I N E  GL+V V D DT SMH+LVFK+W+TS SY+  + WT  FV+RR L   DEIG+
Sbjct: 71  KIPNQERNGLKVWVRDIDTGSMHQLVFKRWSTSKSYIFNDGWTKHFVKRRNLRESDEIGL 130

Query: 121 CWDSFYSRFNFSILKRAPA 139
            WD+  SRF+FS+L RA A
Sbjct: 131 YWDNDQSRFHFSVLSRAAA 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583754|ref|XP_002532630.1| transcription factor, putative [Ricinus communis] gi|223527650|gb|EEF29761.1| transcription factor, putative [Ricinus communis]

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 84/142 (59%), Gaps = 9/142 (6%)

Query: 4   EEHESRIGVSTKLDLF--------TYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFL 55
           E  + R  VST+L L+         YP  I KIL  SDLG L RLL+ T L + +++PFL
Sbjct: 110 EREKHREKVSTELTLYGDPCKKIRKYPGIIKKILKESDLGSLCRLLISTALIKNHILPFL 169

Query: 56  DEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAG 115
                 EV  N  G  V +WD DT + H+L  KKW +  S+V  + WT +FV+RR L  G
Sbjct: 170 SNDVAEEVNSN-HGATVILWDIDTATEHKLTLKKWISCGSFVFNDGWTQNFVKRRNLKKG 228

Query: 116 DEIGMCWDSFYSRFNFSILKRA 137
           DEIG+ WD   SRFNF++++RA
Sbjct: 229 DEIGIVWDIASSRFNFTVIRRA 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815220|ref|XP_002875493.1| hypothetical protein ARALYDRAFT_347288 [Arabidopsis lyrata subsp. lyrata] gi|297321331|gb|EFH51752.1| hypothetical protein ARALYDRAFT_347288 [Arabidopsis lyrata subsp. lyrata]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 87/147 (59%), Gaps = 1/147 (0%)

Query: 3   EEEHESRIGVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSE 62
           E+  E   GVST+L LF  PW I K LT SDLG LSRLL+ T   E +++ +L+   ++ 
Sbjct: 79  EKAEEEWYGVSTELTLFKDPWIIKKELTNSDLGQLSRLLLHTGPIEDHIIKYLNNDDKNN 138

Query: 63  VIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCW 122
           V     G+ V V+D DT+S   L+ K+W T NSYVL   W   F+RRR L  GD+IG+ W
Sbjct: 139 V-QQGLGITVDVYDHDTDSTFELILKRWTTLNSYVLNGGWRMYFIRRRGLRKGDQIGLFW 197

Query: 123 DSFYSRFNFSILKRAPAPTIIVQDHAD 149
           D F SR +F +L RA     + + + +
Sbjct: 198 DRFASRLHFRVLSRASTEVFVDEKNPN 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583752|ref|XP_002532629.1| transcription factor, putative [Ricinus communis] gi|223527649|gb|EEF29760.1| transcription factor, putative [Ricinus communis]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)

Query: 22  PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNS 81
           P  I KIL  SDLG L RLLV T L + +++PF+     +E + +  G  V  WD DT +
Sbjct: 146 PGIIKKILKESDLGSLCRLLVSTDLVKNHILPFMSN-DVAENVNSNHGATVIFWDVDTAT 204

Query: 82  MHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAP 138
            H+L  KKW +  SY+  + WT +FV+RR L  GDEIG+ WD   SRFNF++++RAP
Sbjct: 205 EHKLTLKKWISCESYMFKDGWTQEFVKRRNLKKGDEIGIFWDITSSRFNFAVIRRAP 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2057579	326	AT2G33720 [Arabidopsis thalian	0.851	0.404	0.377	2.4e-21
TAIR|locus:2203005	487	AT1G78640 "AT1G78640" [Arabido	0.703	0.223	0.4	3.7e-14
TAIR|locus:2140275	310	AT4G02870 "AT4G02870" [Arabido	0.851	0.425	0.314	1.1e-11
TAIR|locus:4515103464	138	AT4G28775 "AT4G28775" [Arabido	0.767	0.862	0.325	8.4e-10
TAIR|locus:1006230475	156	AT5G26805 "AT5G26805" [Arabido	0.709	0.705	0.293	1.6e-08
TAIR|locus:2079537	299	NGA2 "NGATHA2" [Arabidopsis th	0.587	0.304	0.357	7.5e-08
TAIR|locus:2041404	310	NGA1 "NGATHA1" [Arabidopsis th	0.722	0.361	0.341	4.8e-07
TAIR|locus:2164215	282	DPA4 "DEVELOPMENT-RELATED PcG	0.580	0.319	0.308	1.8e-06
TAIR|locus:2015832	337	AT1G50680 [Arabidopsis thalian	0.561	0.258	0.326	2e-06
TAIR|locus:2080782	267	AT3G11580 [Arabidopsis thalian	0.729	0.423	0.272	2.1e-06

TAIR|locus:2057579 AT2G33720 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 51/135 (37%), Positives = 82/135 (60%)

Query:     5 EHESRIGVSTKLDLFTY--PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSE 62
             + E +  VST+L L T   PW++   +T+S +G+L RL+++    + +++ +L    +  
Sbjct:   181 KEEEKYYVSTELTLLTVADPWTLKMAMTKSSIGNLYRLVLKASFVDIHILRYLPLDDQM- 239

Query:    63 VIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCW 122
             ++    GL V V+D DT+S+H L  KKWA S+S+VL++ W   FV RR L  GD IGM W
Sbjct:   240 MVKEDSGLAVEVYDHDTDSVHNLALKKWAKSSSFVLVSGWRKCFVDRRGLQVGDVIGMYW 299

Query:   123 DSFYSRFNFSILKRA 137
             D   S+ +F +L R+
Sbjct:   300 DRSESKLHFCVLSRS 314

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2203005 AT1G78640 "AT1G78640" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 46/115 (40%), Positives = 62/115 (53%)

Query:    11 GVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGL 70
             G     +L  Y W+I K L  SD+ H  RLL+ T  AE ++M  L    + ++    EG+
Sbjct:   143 GTRVLTELPPYTWTIKKTLKESDINHQCRLLLNTTDAENHIMRHLPTDDQKKI---QEGI 199

Query:    71 RVSV--WDCDTNSMHRLVFKKWA-TSNSYVLINHWTADFVRRRELAAGDEIGMCW 122
              V V  +D DT + H +VFK+   TS SYV    W   FV RREL  GD+IG+ W
Sbjct:   200 GVDVKAYDHDTYTEHDMVFKRHVKTSKSYVFNGGWAKAFVGRRELKEGDKIGLFW 254

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140275 AT4G02870 "AT4G02870" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 44/140 (31%), Positives = 68/140 (48%)

Query:     3 EEEHESRIGVST-KLDLFTYPWSITKILTRSDLG-HLSRLLVQTRLAERYVMPFLDEASR 60
             E E E  + + T +    T  W+I K L+  D+     RL++Q+     ++   L    +
Sbjct:   170 EREKEKIVMIPTPRFGNATPQWTIKKKLSSYDIRPRCGRLILQSSSFNEHIGRHLP---K 226

Query:    61 SEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGM 120
              ++I    G+ V+V+D DT ++H L   +      Y L + W  DFVRRR L   DEIG+
Sbjct:   227 DQMIKINVGVNVNVYDYDTGTLHEL---RLEYQRQYGLAHGWQEDFVRRRHLKQKDEIGL 283

Query:   121 CWDSFYSRFNFSILKRAPAP 140
              WD   SR  F ++ R   P
Sbjct:   284 LWDFSSSRLQFGVISRNTGP 303

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:4515103464 AT4G28775 "AT4G28775" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 42/129 (32%), Positives = 64/129 (49%)

Query:    10 IGVSTK-LDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPE 68
             I ++ K +D  T  W I KILT    G L          E +++  L E+  S V    +
Sbjct:    12 ININQKVMDNKTSLWKIRKILTEKSDGWLD--FDNNNDIENHILRSLGESIISRV--KKD 67

Query:    69 GLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSR 128
              +++ + D DT S H + F     S++Y + + W     R +ELAAGDEIG+ +D     
Sbjct:    68 SIKIKIDDYDTGSQHEVTFGYNHESDTYYIGSLW-----RLKELAAGDEIGLFYDPISKN 122

Query:   129 FNFSILKRA 137
               FS+LK+A
Sbjct:   123 LCFSVLKQA 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230475 AT5G26805 "AT5G26805" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 34/116 (29%), Positives = 57/116 (49%)

Query:    21 YPWSITKILTRSDLGHLSRL-LVQTRLAERYVMPFLDE-ASRSEVIGNPEGLRVSVWDCD 78
             +PW I K LT  ++  +S+  L   ++ +  +    +E   R++ +     + V   D D
Sbjct:    41 FPWEIIKTLTTDEI--ISKFQLPMEKIRDTMLRHASEEDIYRTKFMSCETNILVK--DLD 96

Query:    79 TNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSIL 134
             TN++H+    K    N++ L   W  +FV+RR L  G  +GM WD     F FS+L
Sbjct:    97 TNTIHQGKLWKHPCENNFALRESWIEEFVKRRRLVVGMVVGMYWDFEACMFCFSVL 152

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2079537 NGA2 "NGATHA2" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 35/98 (35%), Positives = 58/98 (59%)

Query:    27 KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
             K++T SD+G L+RL++  + AERY  P LD ++ ++   + +GL ++  D   NS  R  
Sbjct:    25 KVVTPSDVGKLNRLVIPKQHAERY-FP-LDNSTTND---SNKGLLLNFEDRSGNSW-RFR 78

Query:    87 FKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDS 124
             +  W +S SYV+   W+  FV+ ++L AGD +    DS
Sbjct:    79 YSYWNSSQSYVMTKGWSR-FVKDKKLDAGDIVSFQRDS 115

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2041404 NGA1 "NGATHA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 44/129 (34%), Positives = 65/129 (50%)

Query:    27 KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
             K++T SD+G L+RL++  + AER+  P LD +S      N +GL ++  D  T    R  
Sbjct:    37 KVVTPSDVGKLNRLVIPKQHAERF-FP-LDSSS------NEKGLLLNFEDL-TGKSWRFR 87

Query:    87 FKKWATSNSYVLINHWTADFVRRRELAAGDEIGM--C-WDSFYSRFNFSILKRAPAPTII 143
             +  W +S SYV+   W+  FV+ ++L AGD +    C  DS      F   +R P     
Sbjct:    88 YSYWNSSQSYVMTKGWSR-FVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDWRRRPK---- 142

Query:   144 VQDHADVAA 152
             V DH   AA
Sbjct:   143 VPDHPHFAA 151

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2164215 DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 29/94 (30%), Positives = 53/94 (56%)

Query:    27 KILTRSDLGHLSRLLVQTRLAERY--VMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHR 84
             K LT SD+G L+RL++  + AE+Y  +   L  ++ ++   + +G+ +S  D ++    R
Sbjct:    48 KSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFED-ESGKSWR 106

Query:    85 LVFKKWATSNSYVLINHWTADFVRRRELAAGDEI 118
               +  W +S SYVL   W+  FV+ ++L  GD +
Sbjct:   107 FRYSYWNSSQSYVLTKGWSR-FVKDKQLDPGDVV 139

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010073 "meristem maintenance" evidence=IMP

GO:0010358 "leaf shaping" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048366 "leaf development" evidence=IGI

TAIR|locus:2015832 AT1G50680 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 32/98 (32%), Positives = 52/98 (53%)

Query:    27 KILTRSDLGHLSRLLVQTRLAERYVMPFLD----EASRSEVIGNPEGLRVSVWDCDTNSM 82
             K LT SD+G L+RL++  + A +Y MPF+     E    E++G+ E + V  +D    +M
Sbjct:   159 KELTPSDVGKLNRLVIPKKYAVKY-MPFISADQSEKEEGEIVGSVEDVEVVFYD---RAM 214

Query:    83 HRLVFKK--WATSNSYVLINHWTADFVRRRELAAGDEI 118
              +  F+   W +S S+V    W + FV+ + L   D I
Sbjct:   215 RQWKFRYCYWKSSQSFVFTRGWNS-FVKEKNLKEKDVI 251

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2080782 AT3G11580 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/132 (27%), Positives = 65/132 (49%)

Query:     6 HESRIGVSTKLDLFTYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDE----ASRS 61
             H++ + ++ +  LF       K LT SD+G L+RL++  + AE+Y  P  +      S  
Sbjct:    16 HQNDVAIAQRESLFE------KSLTPSDVGKLNRLVIPKQHAEKY-FPLNNNNNNGGSGD 68

Query:    62 EVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMC 121
             +V    +G+ +S  D ++    +  +  W +S SYVL   W+  +V+ + L AGD +   
Sbjct:    69 DVATTEKGMLLSFED-ESGKCWKFRYSYWNSSQSYVLTKGWSR-YVKDKHLDAGDVV--- 123

Query:   122 WDSFYSRFNFSI 133
                F+ R  F +
Sbjct:   124 ---FFQRHRFDL 132

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IV000570 hypothetical protein (188 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	3e-11

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 15/113 (13%)

Query: 23  WSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSM 82
               K+LT SD+  L RL++  + A+ +             +   EG+ V++ D D    
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAH-------------LPPKEGVEVTLEDPDGKK- 46

Query: 83  HRLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILK 135
             +  KK   S   VL   W  +FVR   L  GD +    D   S+F   I +
Sbjct: 47  WTVKLKKRKNSGRMVLSGGWK-EFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.76
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	99.43
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	96.78
PF02261	116	Asp_decarbox: Aspartate decarboxylase; InterPro: I	89.49
TIGR00223	126	panD L-aspartate-alpha-decarboxylase. Members of t	87.83
PRK05449	126	aspartate alpha-decarboxylase; Provisional	86.77
cd06919	111	Asp_decarbox Aspartate alpha-decarboxylase or L-as	85.53

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.76  E-value=1.1e-17  Score=117.99  Aligned_cols=97  Identities=24%  Similarity=0.310  Sum_probs=71.6

Q ss_pred             EEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCCchH
Q 041585           25 ITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWTA  104 (155)
Q Consensus        25 fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~~  104 (155)
                      |.|+|+++|+...++|.||++.++.|.++.            ..+..|.+.|. .|+.|.++++++.+++.|+|++||. 
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~~~~------------~~~~~v~l~~~-~g~~W~v~~~~~~~~~~~~l~~GW~-   66 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHGGNK------------RKSREVTLKDP-DGRSWPVKLKYRKNSGRYYLTGGWK-   66 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS--S------------S--CEEEEEET-TTEEEEEEEEEECCTTEEEEETTHH-
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhCCCc------------CCCeEEEEEeC-CCCEEEEEEEEEccCCeEEECCCHH-
Confidence            789999999988899999999999982111            14578999994 7899999999888888899999999 


Q ss_pred             hhhhhcCCCCCCEEEEEEcCCCCeE--EEEEEee
Q 041585          105 DFVRRRELAAGDEIGMCWDSFYSRF--NFSILKR  136 (155)
Q Consensus       105 ~fVr~~~Lk~GD~I~f~wd~~~~~l--~F~vl~r  136 (155)
                      +||++++|++||.|.|.++.. +.+  .+.|.++
T Consensus        67 ~Fv~~n~L~~GD~~~F~~~~~-~~~~~~v~i~~~   99 (100)
T PF02362_consen   67 KFVRDNGLKEGDVCVFELIGN-SNFTLKVHIFRK   99 (100)
T ss_dssp             HHHHHCT--TT-EEEEEE-SS-SCE-EEEEEE--
T ss_pred             HHHHHcCCCCCCEEEEEEecC-CCceEEEEEEEC
Confidence            999999999999999999854 455  6666543

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=99.43  E-value=4.1e-13  Score=99.28  Aligned_cols=84  Identities=27%  Similarity=0.434  Sum_probs=68.0

Q ss_pred             CCC-eEEEEEeecCCCCC-CCCEEeehHHHHHcCCCCCCcccccccc-------CCCCCeEEEEEECCCCcEEEEEEEEe
Q 041585           20 TYP-WSITKILTRSDLGH-LSRLLVQTRLAERYVMPFLDEASRSEVI-------GNPEGLRVSVWDCDTNSMHRLVFKKW   90 (155)
Q Consensus        20 ~~p-w~fkK~LT~SDV~~-~~RLvLPk~~~e~~ilP~l~~~~~~~~~-------~~~~gi~V~v~D~dt~~~w~~~~k~w   90 (155)
                      .+| .+|.|+|+.|||++ ++||.||..++..  ..||...+. +.+       ....|+.|.|.|+ .+..|.++|++|
T Consensus        18 ~d~kli~~K~L~~tDv~~~qsRLsmP~~qi~~--~dFLt~eE~-~~i~~~~~~~~~~~Gv~V~lvdp-~~~~~~m~lkkW   93 (114)
T PF03754_consen   18 EDPKLIIEKTLFKTDVDPHQSRLSMPFNQIID--NDFLTEEEK-RIIKEEKKNNDKKKGVEVILVDP-SLRKWTMRLKKW   93 (114)
T ss_pred             CCCeEEEeeeecccCCCCCCceeeccHHHhcc--cccCCHHHH-HHHHHhhccCcccCCceEEEECC-cCcEEEEEEEEe
Confidence            344 88999999999987 8999999999965  256665532 112       3469999999997 578999999999


Q ss_pred             CC---CCceEEcCCchHhhhh
Q 041585           91 AT---SNSYVLINHWTADFVR  108 (155)
Q Consensus        91 ~~---~~syvL~~GW~~~fVr  108 (155)
                      ..   +.+|+|..||+ ++|+
T Consensus        94 ~mg~~~~~YvL~~gWn-~VV~  113 (114)
T PF03754_consen   94 NMGNGTSNYVLNSGWN-KVVE  113 (114)
T ss_pred             cccCCceEEEEEcChH-hhcc
Confidence            88   55799999999 8886

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=96.78  E-value=0.011  Score=45.91  Aligned_cols=93  Identities=15%  Similarity=0.272  Sum_probs=53.1

Q ss_pred             CCe-EEEEEeecCCCC----CCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCC--cEEEEEEEEeCC-
Q 041585           21 YPW-SITKILTRSDLG----HLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTN--SMHRLVFKKWAT-   92 (155)
Q Consensus        21 ~pw-~fkK~LT~SDV~----~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~--~~w~~~~k~w~~-   92 (155)
                      +-| .|-|.|+++|+|    ++..++|||..++.. ||.+....     ..+..+.|.+.+. ++  ..+.+|+.|-.+ 
T Consensus         5 ~~~~~~~K~LSaNDtGaTGgHQaGiyIpk~~~~~l-Fp~~~~~~-----~~Np~~~~~~~~~-s~~~~~~~~r~iYYnn~   77 (156)
T PF09217_consen    5 DSWAIYCKRLSANDTGATGGHQAGIYIPKSAAELL-FPSINHTK-----EENPDIWLKARWQ-SHFVTDSQVRFIYYNNR   77 (156)
T ss_dssp             SSEEEEEEE--CCCCTTTSSS--EEEE-HHHHHHH--GGG-SSS-----SSS-EEEEEEEET-TTT---EEEEEEEE-CC
T ss_pred             cceEEEEEEccCCCCCCcCcccceeEecccHHHHh-CCCCCccc-----ccCCceeEEEEEC-CCCccceeEEEEEEccc
Confidence            345 599999999997    378999999999885 78766432     1235577777763 33  457788887765 


Q ss_pred             -----CCceEEcCCchHhhhhhcCCCCCCEEEEE
Q 041585           93 -----SNSYVLINHWTADFVRRRELAAGDEIGMC  121 (155)
Q Consensus        93 -----~~syvL~~GW~~~fVr~~~Lk~GD~I~f~  121 (155)
                           .+.|-|+ +|-+.|--.+.=.+||..+|-
T Consensus        78 ~~~gTRNE~RIT-~~G~~~~~~~~~~tGaL~vla  110 (156)
T PF09217_consen   78 LFGGTRNEYRIT-RFGRGFPLQNPENTGALLVLA  110 (156)
T ss_dssp             CTTSS--EEEEE----TTSGGG-GGGTT-EEEEE
T ss_pred             ccCCCcCceEEe-eecCCCccCCccccccEEEEE
Confidence                 3449998 577555544445789988776

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase

Probab=89.49  E-value=7.1  Score=29.07  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCC-CCceEEcCCch
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWAT-SNSYVLINHWT  103 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~-~~syvL~~GW~  103 (155)
                      +-+.|..|++..|-+.|..+.++. -|+|+               -.|.|++..+|..|+-..-.-.. ++.-.|+|  .
T Consensus        12 ratVT~a~L~Y~GSitID~~Ll~aagi~p~---------------E~V~V~Nv~nG~Rf~TYvI~g~~GSg~I~lNG--a   74 (116)
T PF02261_consen   12 RATVTEADLNYEGSITIDEDLLDAAGILPY---------------EQVQVVNVNNGERFETYVIPGERGSGVICLNG--A   74 (116)
T ss_dssp             EEE--EEETTSTSCEEEEHHHHHHCT--TT---------------BEEEEEETTT--EEEEEEEEESTTTT-EEEEG--G
T ss_pred             ceEEeccccccceeeEECHHHHHHcCCCcC---------------CEEEEEECCCCcEEEEEEEEccCCCcEEEECC--H
Confidence            457899999989999999999874 34443               46889999988877654444332 45577776  2


Q ss_pred             HhhhhhcCCCCCCEEEEE
Q 041585          104 ADFVRRRELAAGDEIGMC  121 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~  121 (155)
                          -.+.-+.||.|.+.
T Consensus        75 ----AArl~~~GD~vII~   88 (116)
T PF02261_consen   75 ----AARLVQVGDRVIIM   88 (116)
T ss_dssp             ----GGGCS-TT-EEEEE
T ss_pred             ----HHhccCCCCEEEEE
Confidence                56778999988864

The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....

>TIGR00223 panD L-aspartate-alpha-decarboxylase

Probab=87.83  E-value=9.3  Score=28.84  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=54.0

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT  103 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~  103 (155)
                      +.+.|..|+...|-+.|..+.++. -|+|+               -.|.|+|.+.|..++-..-.-. .++.-.|+|  -
T Consensus        12 ratVT~a~L~Y~GSItID~~Lm~aagi~p~---------------E~V~V~Nv~NG~Rf~TYvI~G~~GSg~I~lNG--A   74 (126)
T TIGR00223        12 RATVTHANLNYEGSITIDEDLLDAAGILEN---------------EKVDIVNVNNGKRFSTYAIAGKRGSRIICVNG--A   74 (126)
T ss_pred             ceEEeccccccceeEEECHHHHHhcCCCCC---------------CEEEEEECCCCcEEEEEEEEcCCCCCEEEeCC--H
Confidence            457899999889999999999874 34443               4688999988887654333322 245577876  3


Q ss_pred             HhhhhhcCCCCCCEEEEE
Q 041585          104 ADFVRRRELAAGDEIGMC  121 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~  121 (155)
                          -.+--++||.|.+.
T Consensus        75 ----AArl~~~GD~VII~   88 (126)
T TIGR00223        75 ----AARCVSVGDIVIIA   88 (126)
T ss_pred             ----HHhcCCCCCEEEEE
Confidence                56778999988864

Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.

>PRK05449 aspartate alpha-decarboxylase; Provisional

Probab=86.77  E-value=11  Score=28.37  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=54.3

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCC--CCceEEcCCc
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWAT--SNSYVLINHW  102 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~--~~syvL~~GW  102 (155)
                      +-+.|..|+...|-+.|..+.++. -|+|+               -.|.||+...|..++- |-+.+.  ++.-.|+|  
T Consensus        12 ratVT~a~L~Y~GSitID~~Ll~aagi~p~---------------E~V~V~Nv~NG~Rf~T-YvI~g~~GSg~I~lNG--   73 (126)
T PRK05449         12 RATVTEADLNYEGSITIDEDLLDAAGILEN---------------EKVQIVNVNNGARFET-YVIAGERGSGVICLNG--   73 (126)
T ss_pred             ceEEeccccccceeEEECHHHHHhcCCCCC---------------CEEEEEECCCCcEEEE-EEEEcCCCCCEEEeCC--
Confidence            457899999889999999999874 34443               4688999988876654 333333  44577876  


Q ss_pred             hHhhhhhcCCCCCCEEEEEE
Q 041585          103 TADFVRRRELAAGDEIGMCW  122 (155)
Q Consensus       103 ~~~fVr~~~Lk~GD~I~f~w  122 (155)
                      -    -.+.-+.||.|.+.-
T Consensus        74 A----AAr~~~~GD~vII~a   89 (126)
T PRK05449         74 A----AARLVQVGDLVIIAA   89 (126)
T ss_pred             H----HHhcCCCCCEEEEEE
Confidence            2    567788999888753

>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production

Probab=85.53  E-value=13  Score=27.56  Aligned_cols=75  Identities=17%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCC--CCceEEcCCc
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWAT--SNSYVLINHW  102 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~--~~syvL~~GW  102 (155)
                      +-+.|..|+...|-+.|..+.++. -|+|               +-.|.||+...|..++-. -+.+.  ++.-.|+|  
T Consensus        11 ratVT~a~L~YeGSitID~~Ll~aagi~~---------------~E~V~I~Nv~NG~Rf~TY-vI~g~~gSg~I~lNG--   72 (111)
T cd06919          11 RATVTEADLNYEGSITIDEDLLEAAGILP---------------YEKVLVVNVNNGARFETY-VIPGERGSGVICLNG--   72 (111)
T ss_pred             ceEEeccccccceeEEECHHHHHhcCCCC---------------CCEEEEEECCCCcEEEEE-EEEcCCCCCEEEeCC--
Confidence            457899999889999999999875 3333               357889999888766543 33333  45577876  


Q ss_pred             hHhhhhhcCCCCCCEEEEEE
Q 041585          103 TADFVRRRELAAGDEIGMCW  122 (155)
Q Consensus       103 ~~~fVr~~~Lk~GD~I~f~w  122 (155)
                      -    -.+.-+.||.|.+.-
T Consensus        73 A----AAr~~~~GD~vII~s   88 (111)
T cd06919          73 A----AARLGQPGDRVIIMA   88 (111)
T ss_pred             H----HHhcCCCCCEEEEEE
Confidence            2    567788999988753

Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		3e-05

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 27  KILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLV 86
           K +T SD+G L+RL++    AE++        S   V+ N E +   VW        R  
Sbjct: 16  KAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVW--------RFR 67
Query: 87  FKKWATSNSYVLINHWTADFVRRRELAAGDEIGMC 121
           +  W +S SYVL   W+  FV+ + L AGD +   
Sbjct: 68  YSYWNSSQSYVLTKGWSR-FVKEKNLRAGDVVSFS 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	7e-12

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score = 58.2 bits (140), Expect = 7e-12
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 24  SITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMH 83
              K +T SD+G L+RL++    AE++               + +G+ ++  D     + 
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLP-------SSNVSVKGVLLNFEDV-NGKVW 64

Query: 84  RLVFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDS 124
           R  +  W +S SYVL   W+  FV+ + L AGD +     +
Sbjct: 65  RFRYSYWNSSQSYVLTKGWS-RFVKEKNLRAGDVVSFSRSN 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.93
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.61
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.51
1pqh_A	143	Aspartate 1-decarboxylase; pyruvoyl dependent deca	85.7
3oug_A	114	Aspartate 1-decarboxylase; structural genomics, ce	85.41
1na6_A	404	Ecorii, restriction endonuclease ecorii; site-spec	84.74
2c45_A	139	Aspartate 1-decarboxylase precursor; double-PSI be	82.46

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.93  E-value=3e-25  Score=165.50  Aligned_cols=107  Identities=26%  Similarity=0.479  Sum_probs=91.6

Q ss_pred             CeEEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCC
Q 041585           22 PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINH  101 (155)
Q Consensus        22 pw~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~G  101 (155)
                      ...|.|+||+|||+..+||+||+++|+.| ||.++...      ..+|+.|.+.|. .|+.|+|+|.+|.++++|+|++|
T Consensus        11 ~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~-lP~~~~~~------~~~~~~l~l~D~-~Gk~W~fr~~~~~~~~~~~Lt~G   82 (130)
T 1wid_A           11 EALFEKAVTPSDVGKLNRLVIPKHHAEKH-FPLPSSNV------SVKGVLLNFEDV-NGKVWRFRYSYWNSSQSYVLTKG   82 (130)
T ss_dssp             EEEEEEECCTTTTSSSCCEEECHHHHTTT-SCCCSSCC------SSCCEEEEEEET-TTEEEEEEEEEETTTTEEEEESS
T ss_pred             cceEEEEEehHHcCCCCEEEeCHHHHHhh-CCcccccc------CCCcEEEEEEeC-CCCEEEEEEEEECCCCceEEcCC
Confidence            36899999999998889999999999998 79877431      247899999996 78999999999988889999999


Q ss_pred             chHhhhhhcCCCCCCEEEEEEcCCC-CeEEEEEEeec
Q 041585          102 WTADFVRRRELAAGDEIGMCWDSFY-SRFNFSILKRA  137 (155)
Q Consensus       102 W~~~fVr~~~Lk~GD~I~f~wd~~~-~~l~F~vl~r~  137 (155)
                      |. .||++++|++||+|+|+++... ..|...+-++.
T Consensus        83 W~-~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~  118 (130)
T 1wid_A           83 WS-RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS  118 (130)
T ss_dssp             HH-HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCC
T ss_pred             hH-HHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECC
Confidence            99 9999999999999999999754 45655544444

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.61  E-value=8.8e-15  Score=110.93  Aligned_cols=93  Identities=17%  Similarity=0.151  Sum_probs=77.1

Q ss_pred             CCCeEEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEc
Q 041585           20 TYPWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLI   99 (155)
Q Consensus        20 ~~pw~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~   99 (155)
                      .+| .|.|+||+|||....+|.||++.++.| ||..+             ..|.+.|.  |+.|.+++.++.  .+++|+
T Consensus        45 ~~P-~Fvk~l~~S~v~~~~~L~IP~~Fa~~~-lp~~~-------------~~i~L~~~--gk~W~v~~~~~~--~~~~ls  105 (146)
T 4i1k_A           45 TNP-FFRVVLRPSYLYRGCIMYLPSGFAEKY-LSGIS-------------GFIKVQLA--EKQWPVRCLYKA--GRAKFS  105 (146)
T ss_dssp             SSC-EEEEECCGGGSSTTCCEECCHHHHHHH-CTTCC-------------SEEEEEET--TEEEEEEEEEET--TEEEEC
T ss_pred             CCC-EEEEEECchhcCCCcEEEeCHHHHHHh-CCCCC-------------eEEEEEEC--CcEEEEEEEEeC--CcEEEC
Confidence            567 688999999997667899999999999 67532             46778885  599999999976  379999


Q ss_pred             CCchHhhhhhcCCCCCCEEEEEEcCCCCeEEEEE
Q 041585          100 NHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSI  133 (155)
Q Consensus       100 ~GW~~~fVr~~~Lk~GD~I~f~wd~~~~~l~F~v  133 (155)
                      +||. .||++++|++||.|.|--... ..+.|.|
T Consensus       106 ~GW~-~Fv~dn~L~~GD~cvFeli~~-~~~~f~V  137 (146)
T 4i1k_A          106 QGWY-EFTLENNLGEGDVCVFELLRT-RDFVLKV  137 (146)
T ss_dssp             TTHH-HHHHHTTCCTTCEEEEEECSS-SSCEEEE
T ss_pred             CchH-HHHHHcCCCCCCEEEEEEecC-CceEEEE
Confidence            9999 999999999999999988754 3444555

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.51  E-value=1.4e-13  Score=98.10  Aligned_cols=92  Identities=17%  Similarity=0.273  Sum_probs=75.2

Q ss_pred             EEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCCch
Q 041585           24 SITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWT  103 (155)
Q Consensus        24 ~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~  103 (155)
                      .|-|+|+++|.  ..+|.||++.++.| .+.+             +..|.+.|. .|+.|.+++.++.  +.++|++||.
T Consensus        10 ~F~K~l~~~~~--~~~L~IP~~F~~~~-~~~~-------------~~~v~L~~~-~G~~W~v~~~~~~--~~~~l~~GW~   70 (104)
T 1yel_A           10 QFMKPFISEKS--SKSLEIPLGFNEYF-PAPF-------------PITVDLLDY-SGRSWTVRMKKRG--EKVFLTVGWE   70 (104)
T ss_dssp             EEEEECCHHHH--TTCEECCHHHHTTC-CCCC-------------CSEEEEEET-TSCEEEEEEEEET--TEEEECTTHH
T ss_pred             CEEEEECCCCc--cceEECCHHHHHhc-CccC-------------CCEEEEECC-CCCEEEEEEEEEC--CcEEEccChH
Confidence            68899999984  79999999999875 3432             246888895 6899999999864  5899999999


Q ss_pred             HhhhhhcCCCCCCEEEEEEcCCCCeEEEEEEee
Q 041585          104 ADFVRRRELAAGDEIGMCWDSFYSRFNFSILKR  136 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~r  136 (155)
                       +||++++|++||.+.|.-+. ++.|...|.++
T Consensus        71 -~Fv~~~~L~~GD~lvF~~~~-~~~f~V~If~~  101 (104)
T 1yel_A           71 -NFVKDNNLEDGKYLQFIYDR-DRTFYVIIYGH  101 (104)
T ss_dssp             -HHHHHHTCCTTCEEEEEECS-SSEEEEEEECS
T ss_pred             -HHHHHcCCCCCCEEEEEEcC-CCeEEEEEECC
Confidence             99999999999999998864 45666666654

>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A

Probab=85.70  E-value=9.1  Score=28.39  Aligned_cols=75  Identities=9%  Similarity=0.103  Sum_probs=53.9

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT  103 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~  103 (155)
                      +-+.|..|++..|-+.|..+.++. -|+|               +-.|.|+|.+.|..++-..-.-. .++.-.|+|  .
T Consensus        29 RatVT~AdL~Y~GSITID~dLldaAgIl~---------------~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNG--A   91 (143)
T 1pqh_A           29 RVKVTHADLHYEGTCAIDQDFLDAAGILE---------------NEAIDIWNVTNGKRFSTYAIAAERGSRIISVNG--A   91 (143)
T ss_dssp             EEECCBCCSSSCCCEEEEHHHHHHHTCCT---------------TCEEEEEETTTCCEEEEEEEEECTTCCCEECCG--G
T ss_pred             ceEEeccccccceeEEECHHHHHHcCCCC---------------CCEEEEEECCCCceEEEEEEEccCCCceEEech--H
Confidence            457899999989999999999874 3444               35788999988876654333332 244467766  2


Q ss_pred             HhhhhhcCCCCCCEEEEE
Q 041585          104 ADFVRRRELAAGDEIGMC  121 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~  121 (155)
                          -.+..++||.|.+.
T Consensus        92 ----AArl~~~GD~VII~  105 (143)
T 1pqh_A           92 ----AAHCASVGDIVIIA  105 (143)
T ss_dssp             ----GGGTCCTTCEEEEE
T ss_pred             ----HHccCCCCCEEEEE
Confidence                56788999988864

>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0

Probab=85.41  E-value=8.2  Score=27.60  Aligned_cols=75  Identities=15%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT  103 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~  103 (155)
                      +-+.|..|+...|-+.|..+.++. .|+|               +-.|.|++.+.|..++-..-.-. .++.-.|+|  .
T Consensus        15 ratVT~a~L~Y~GSitID~~Ll~aA~i~~---------------~E~V~I~NvnNG~Rf~TYvI~GerGSg~I~lNG--A   77 (114)
T 3oug_A           15 YATVTGKDLFYVGSITIDSEIMKQANIIE---------------NEKVQVVNLNNGERLETYVIKGEPNSKTIALNG--P   77 (114)
T ss_dssp             EEECCEEESSCC-CEEEEHHHHHHTTCCT---------------TBEEEEEETTTCCEEEEEEEEECTTSCCEEEEG--G
T ss_pred             ceEEecccccccceEEECHHHHHHcCCCc---------------CCEEEEEECCCCceEEEEEEEccCCCCEEEeCC--H
Confidence            567899999989999999999875 3333               35788999988876654433332 244577776  2


Q ss_pred             HhhhhhcCCCCCCEEEEE
Q 041585          104 ADFVRRRELAAGDEIGMC  121 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~  121 (155)
                          -.|..++||.|.+.
T Consensus        78 ----AAr~~~~GD~vII~   91 (114)
T 3oug_A           78 ----AARRCEIGDQLFII   91 (114)
T ss_dssp             ----GGGGCCTTCEEEEE
T ss_pred             ----HHhccCCCCEEEEE
Confidence                56778899998864

>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A

Probab=84.74  E-value=1.3  Score=38.22  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=63.7

Q ss_pred             CCeEEEEEeecCCCC----CCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-----
Q 041585           21 YPWSITKILTRSDLG----HLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-----   91 (155)
Q Consensus        21 ~pw~fkK~LT~SDV~----~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-----   91 (155)
                      +-..+-|.|+..|+|    ++..+.+|+..+... ||.++.... +  .....+.+-+-|.+.... ..++.+-.     
T Consensus        17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~l-fp~lg~~~e-~--~~~~~~~~~l~d~d~p~t-d~~~twYn~R~~~   91 (404)
T 1na6_A           17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKL-FPSINHTRE-L--NPSVFLTAHVSSHDCPDS-EARAIYYNSAHFG   91 (404)
T ss_dssp             SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHH-CGGGCCCSS-S--SCEEEEEEEESSSCCCCE-EEEEEEECGGGTT
T ss_pred             cchheeEEcccccCCCCCCcccccCCchHHHHHh-cccCCCccc-c--CCcceeEEEeccCCCceE-EEEEEEecccccC
Confidence            345689999999996    378899999878885 898884421 1  011223344445455555 77776443     


Q ss_pred             -CCCceEEcCCchHhhhhhcCCCCCCEEEEEEc
Q 041585           92 -TSNSYVLINHWTADFVRRRELAAGDEIGMCWD  123 (155)
Q Consensus        92 -~~~syvL~~GW~~~fVr~~~Lk~GD~I~f~wd  123 (155)
                       ..+-|-|+. |-+.+.=.+...+||...|-..
T Consensus        92 ~tRnEyRLt~-~~~~~~~~~~a~~GDLlvia~~  123 (404)
T 1na6_A           92 KTRNEKRITR-WGRGSPLQDPENTGALTLLAFK  123 (404)
T ss_dssp             SCCCEEEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred             CCCCceEEee-cCCCCcccccCCCCCEEEEEEe
Confidence             223588983 6656666788999998887643

>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}

Probab=82.46  E-value=12  Score=27.68  Aligned_cols=75  Identities=15%  Similarity=0.133  Sum_probs=53.8

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT  103 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~  103 (155)
                      +-+.|..|++..|-+.|-.+.++. -|+|               +-.|.|+|.+.|..++-..-.-. .++.-.|+|  .
T Consensus        12 RatVT~AdL~Y~GSITID~dLldaAgIl~---------------~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNG--A   74 (139)
T 2c45_A           12 RATVTCADLHYVGSVTIDADLMDAADLLE---------------GEQVTIVDIDNGARLVTYAITGERGSGVIGING--A   74 (139)
T ss_dssp             EEECCCEESSSCCEEEEEHHHHHHTTCCS---------------SCCEEEEETTTCCEEEECEEEECTTTTCEEEES--S
T ss_pred             ceEEeccccccceeeEECHHHHHHcCCCC---------------CCEEEEEECCCCceEEEEEEEccCCCCEEEEch--H
Confidence            567899999989999999999875 3433               34678999988876654333322 244577876  2


Q ss_pred             HhhhhhcCCCCCCEEEEE
Q 041585          104 ADFVRRRELAAGDEIGMC  121 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~  121 (155)
                          -.|..+.||.|.+.
T Consensus        75 ----AArl~~~GD~vII~   88 (139)
T 2c45_A           75 ----AAHLVHPGDLVILI   88 (139)
T ss_dssp             ----TTTTSCTTCEEEEE
T ss_pred             ----HHccCCCCCEEEEE
Confidence                56778899998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	2e-12

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.1 bits (140), Expect = 2e-12
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 26  TKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRL 85
            K +T SD+G L+RL++    AE++  P            + +G+ ++  D +       
Sbjct: 8   EKAVTPSDVGKLNRLVIPKHHAEKH-FPLPSSN------VSVKGVLLNFEDVNGKVWR-F 59

Query: 86  VFKKWATSNSYVLINHWTADFVRRRELAAGDEIGMCWDSFYSRFNFSILKRAPAPTI 142
            +  W +S SYVL   W+  FV+ + L AGD +     +   +  +   K      +
Sbjct: 60  RYSYWNSSQSYVLTKGWS-RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.93
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.55
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.44
g1uhe.1	121	Pyruvoyl dependent aspartate decarboxylase, ADC {H	90.15
d1ppya_	118	Pyruvoyl dependent aspartate decarboxylase, ADC {E	80.24

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.5e-25  Score=161.78  Aligned_cols=108  Identities=26%  Similarity=0.470  Sum_probs=91.6

Q ss_pred             CeEEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCC
Q 041585           22 PWSITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINH  101 (155)
Q Consensus        22 pw~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~G  101 (155)
                      +-+|+|+||+|||+..+||+||++++++| ||.++...      ..+++.|.++|. .|+.|+|+|++|.++++|+|.+|
T Consensus         4 ~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~-lp~~~~~~------~~~~~~~~~~d~-~g~~W~~~~~~~~~~~~~~l~~G   75 (117)
T d1wida_           4 EALFEKAVTPSDVGKLNRLVIPKHHAEKH-FPLPSSNV------SVKGVLLNFEDV-NGKVWRFRYSYWNSSQSYVLTKG   75 (117)
T ss_dssp             EEEEEEECCTTTTSSSCCEEECHHHHTTT-SCCCSSCC------SSCCEEEEEEET-TTEEEEEEEEEETTTTEEEEESS
T ss_pred             ceEEEEEecchhcCCCCEEEECHHHHHHh-CCcccccc------CCCcEEEEEEeC-CCCEEEEEEEEECCCCceEEecC
Confidence            46899999999998889999999999998 68776442      247899999996 68999999999998889999999


Q ss_pred             chHhhhhhcCCCCCCEEEEEEcCCC-CeEEEEEEeecC
Q 041585          102 WTADFVRRRELAAGDEIGMCWDSFY-SRFNFSILKRAP  138 (155)
Q Consensus       102 W~~~fVr~~~Lk~GD~I~f~wd~~~-~~l~F~vl~r~~  138 (155)
                      |. +||++++|++||+|+|+|+... ..|.+.+.++..
T Consensus        76 W~-~Fv~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          76 WS-RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             HH-HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             HH-HHHHHcCCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            99 9999999999999999998654 456555544443

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2e-15  Score=115.09  Aligned_cols=109  Identities=11%  Similarity=0.059  Sum_probs=83.8

Q ss_pred             CCCeEEEEEeecCCCCCCCC----EEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCC--
Q 041585           20 TYPWSITKILTRSDLGHLSR----LLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATS--   93 (155)
Q Consensus        20 ~~pw~fkK~LT~SDV~~~~R----LvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~--   93 (155)
                      ...+.|.|.||+||++.++|    |+|||++++.+ ||.|+....   .....++.+.|.|. .|..|.||+.||.+.  
T Consensus        13 ~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~-FP~l~~~~e---~nP~~~l~~~i~d~-~g~~w~fR~iYyn~~~~   87 (175)
T d1na6a1          13 ENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKL-FPSINHTRE---LNPSVFLTAHVSSH-DCPDSEARAIYYNSAHF   87 (175)
T ss_dssp             SSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHH-CGGGCCCSS---SSCEEEEEEEESSS-CCCCEEEEEEEECGGGT
T ss_pred             CceEEEEEEcccccccccCCccceeeecHHHHHHh-CCCCCcccc---cCCCceEEEEEecC-CCCeeEEEEEEECCccC
Confidence            45689999999999998887    99999999997 798885521   01113456667795 789999999999874  


Q ss_pred             ----CceEEcCCchHhhhhhcCCCCCCEEEEEEc-CC--CCeEEEEEE
Q 041585           94 ----NSYVLINHWTADFVRRRELAAGDEIGMCWD-SF--YSRFNFSIL  134 (155)
Q Consensus        94 ----~syvL~~GW~~~fVr~~~Lk~GD~I~f~wd-~~--~~~l~F~vl  134 (155)
                          +.|.|+.+|. .|+..+.+++||.+.|..+ ..  ..+.++.|.
T Consensus        88 ggTRneyRiT~~g~-~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vw  134 (175)
T d1na6a1          88 GKTRNEKRITRWGR-GSPLQDPENTGALTLLAFKLDEQGGDCKEVNIW  134 (175)
T ss_dssp             TSCCCEEEEECCCT-TSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEE
T ss_pred             CCccccEEEEeccc-cccccCccccccEEEEEeecCCCCCceeEEEEE
Confidence                6799999999 7999999999999998775 22  244455443

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=3.6e-13  Score=94.45  Aligned_cols=91  Identities=18%  Similarity=0.277  Sum_probs=73.1

Q ss_pred             EEEEEeecCCCCCCCCEEeehHHHHHcCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeCCCCceEEcCCch
Q 041585           24 SITKILTRSDLGHLSRLLVQTRLAERYVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWATSNSYVLINHWT  103 (155)
Q Consensus        24 ~fkK~LT~SDV~~~~RLvLPk~~~e~~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~~~~syvL~~GW~  103 (155)
                      .|-|+|.+++.  ..+|.||+..+..| .+.++             -+|.+.|. .|+.|.+++.+..  +..+|.+||.
T Consensus         8 ~Ffkv~~~~~~--~~~L~IP~~F~~~~-~~~~~-------------~~i~L~d~-~G~~W~v~~~~~~--~~~~~~~GW~   68 (102)
T d1yela1           8 QFMKPFISEKS--SKSLEIPLGFNEYF-PAPFP-------------ITVDLLDY-SGRSWTVRMKKRG--EKVFLTVGWE   68 (102)
T ss_dssp             EEEEECCHHHH--TTCEECCHHHHTTC-CCCCC-------------SEEEEEET-TSCEEEEEEEEET--TEEEECTTHH
T ss_pred             eEEEEEcCccc--CCCEECCHHHHHhC-CCCCC-------------CEEEEEcC-CCCEEEEEEEEeC--CeEEEccCHH
Confidence            47789999987  67899999999986 34322             46788896 6899999998753  5678899999


Q ss_pred             HhhhhhcCCCCCCEEEEEEcCCCCeEEEEEEe
Q 041585          104 ADFVRRRELAAGDEIGMCWDSFYSRFNFSILK  135 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~wd~~~~~l~F~vl~  135 (155)
                       .||++++|++||.|.|--+. ++.|.+.|..
T Consensus        69 -~Fv~~n~L~~GD~~vF~~~~-~~~f~V~If~   98 (102)
T d1yela1          69 -NFVKDNNLEDGKYLQFIYDR-DRTFYVIIYG   98 (102)
T ss_dssp             -HHHHHHTCCTTCEEEEEECS-SSEEEEEEEC
T ss_pred             -HHHHHcCCCcCCEEEEEEcC-CcEEEEEEeC
Confidence             99999999999999998774 5666665554

>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: ADC-like
family: Pyruvoyl dependent aspartate decarboxylase, ADC
domain: Pyruvoyl dependent aspartate decarboxylase, ADC
species: Escherichia coli [TaxId: 562]

Probab=80.24  E-value=6.6  Score=26.54  Aligned_cols=75  Identities=9%  Similarity=0.081  Sum_probs=53.8

Q ss_pred             EEEeecCCCCCCCCEEeehHHHHH-cCCCCCCccccccccCCCCCeEEEEEECCCCcEEEEEEEEeC-CCCceEEcCCch
Q 041585           26 TKILTRSDLGHLSRLLVQTRLAER-YVMPFLDEASRSEVIGNPEGLRVSVWDCDTNSMHRLVFKKWA-TSNSYVLINHWT  103 (155)
Q Consensus        26 kK~LT~SDV~~~~RLvLPk~~~e~-~ilP~l~~~~~~~~~~~~~gi~V~v~D~dt~~~w~~~~k~w~-~~~syvL~~GW~  103 (155)
                      +-+.|..|+...|-+.|.++.++. -|+|+               -.|.|++...|..++-..-.-. .++.-.|+|.  
T Consensus        12 ra~VT~a~l~YeGSitID~~Lm~aagi~~~---------------EkV~V~Nv~NG~Rf~TYvI~g~~gSg~I~lNGa--   74 (118)
T d1ppya_          12 RVKVTHADLHYEGSCAIDQDFLDAAGILEN---------------EAIDIWNVTNGKRFSTYAIAAERGSRIISVNGA--   74 (118)
T ss_dssp             EEECCCCSSCCTTSEEEEHHHHHHHTCCTT---------------CEEEEEETTTCCEEEEEEEEECTTCCCEECTTT--
T ss_pred             CcEEeccccceeEEEEECHHHHHHcCCCCC---------------CEEEEEECCCCcEEEEEEEEcCCCCCEEEecCh--
Confidence            457899999999999999999874 34443               4688999988887654433332 3445777762  


Q ss_pred             HhhhhhcCCCCCCEEEEE
Q 041585          104 ADFVRRRELAAGDEIGMC  121 (155)
Q Consensus       104 ~~fVr~~~Lk~GD~I~f~  121 (155)
                          -.+.-++||.|.+.
T Consensus        75 ----AAr~~~~GD~vII~   88 (118)
T d1ppya_          75 ----AAHCASVGDIVIIA   88 (118)
T ss_dssp             ----TGGGCCTTCEEEEE
T ss_pred             ----hheecCCCCEEEEE
Confidence                45677899998864