Citrus Sinensis ID: 041626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MERNIMSNSLKDHKIGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIKKWSALTGALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHccccccccccccccEEEcHccccccHHHHHcccHcHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccEEEEcccc
Coil and Loop (DISEMBL)
mernimsnslkdhkigsrftrdsisncngynnqnsgnkmkdSCQQRQQQSygeeylsgfswpprsytcsfcKREFRSAqalgghmnvhrrdrarlrispptpkdiivnnninnaspsEIKKWSAltgalrpkdsvkkneksfsgakefggfteeddgfklskkggeiVRLDLEigvisdskeDLDLELRLGYS
Flexible Loop (DISEMBL)
mernimsnslkdhkigsrftrdsisncNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFSWPPRSYTCSFCKREFRSaqalgghmnvhrrdrarlrispptpkdiivnnninnaspseIKKWSALTGalrpkdsvkkneksfsgakefggfteeddgfklskkggeivrldleigvisdskedldlelrlgys
Low Complexity Region (SEG)
MERNIMSNSLKDHKIGSRFTRDSIsncngynnqnsgnKMKDSCQQRQQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIKKWSALTGALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS
Disordered region (IsUnstruct)
*****************************************************EYLSGFSWPPRSYTCSFCKREFRSAQALGGHM********************IV********************************************************GGEIVRLDLEIGVIS***************
Disordered Region (DISOPRED)
****************************************************************SYTCSFCKREFRSAQALGGHMNV***************************************************************************************************ELRLGY*
Disordered Region (DISEMBL)
********SLKDHKIGSRFTRDSISNCNGYNNQNSG****************EEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIKKWSALTGALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS
Disordered Region (DISPRO)
*********LKDHKIGSRFTRDSISNC****************************LSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI****************************************************************************I**I*DS*EDLDLELRLGYS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERNIMSNSLKDHKIGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIKKWSALTGALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q38895	204	Transcriptional regulator	yes	no	0.746	0.705	0.440	5e-29
Q9LHS9	226	Probable transcriptional	no	no	0.362	0.309	0.512	3e-15
Q9SR34	172	Transcriptional regulator	no	no	0.658	0.738	0.345	5e-11
Q42485	228	Zinc finger protein 1 OS=	no	no	0.160	0.135	0.548	1e-05
Q39266	209	Zinc finger protein 7 OS=	no	no	0.160	0.148	0.548	2e-05
Q9FFX4	161	Zinc finger protein KNUCK	no	no	0.606	0.726	0.279	7e-05
Q39263	260	Zinc finger protein 4 OS=	no	no	0.150	0.111	0.551	0.0001
Q39261	150	Zinc finger protein 2 OS=	no	no	0.160	0.206	0.516	0.0001
Q39265	197	Zinc finger protein 6 OS=	no	no	0.170	0.167	0.515	0.0002
Q39262	235	Zinc finger protein 3 OS=	no	no	0.145	0.119	0.535	0.0003

>sp|Q38895|SUP_ARATH Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 104/186 (55%), Gaps = 42/186 (22%)

Query: 41  DSCQQRQQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI--- 97
           D+CQQ        +YL GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR+   
Sbjct: 28  DNCQQ------DHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQS 81

Query: 98  -----------------------SPPTPKDIIVNNNINNASPSEIKKWSALTGALRPK-- 132
                                  SPP P    +      + PS  +  + L  +L PK  
Sbjct: 82  PSSSSTPSPPYPNPNYSYSTMANSPP-PHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSK 140

Query: 133 ---DSVKKNEKS--FSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLE 187
              ++  K +KS     A E   FT +D    L  +  EI+ L+LEIG+I++S++DLDLE
Sbjct: 141 HTPENACKTKKSSLLVEAGEATRFTSKDACKIL--RNDEIISLELEIGLINESEQDLDLE 198

Query: 188 LRLGYS 193
           LRLG++
Sbjct: 199 LRLGFA 204

Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHS9|RBE_ARATH Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 10/80 (12%)

Query: 46  RQQQSYG--EEYLSG--FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPT 101
           R+++++   EEY  G    WPPRSY+CSFC REF+SAQALGGHMNVHRRDRARL+    +
Sbjct: 31  REERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLS 90

Query: 102 PKDIIVNNNINNASPSEIKK 121
           P      ++ + A+P E  +
Sbjct: 91  P------SSTDQATPPECDR 104

Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR34|TAC1_ARATH Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 9/136 (6%)

Query: 64  RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR--ISPPTPKDIIVNNNINNASPSEIKK 121
           RSY CSFC R F +AQALGGHMN+HRRDRA+LR  +      D++  ++ +     ++ +
Sbjct: 33  RSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQKLMEDNKDDVVAESDASEVVSLDLNE 92

Query: 122 WSALTG-ALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKL-SKKGGEIVRLDLEIGVISD 179
                G AL   D  +  +   S  ++   + +E    KL +   G++    ++    S 
Sbjct: 93  QQQQQGEALTCDDHDQYVDNDISPKQKLEFWVQE---SKLDTNDHGKVTEASIDGSSSSH 149

Query: 180 SK--EDLDLELRLGYS 193
            +  E LDLELRLG S
Sbjct: 150 HRDIEVLDLELRLGQS 165

Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 26/31 (83%)

Query: 63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA 93
          PR ++C++C+R+F S+QALGGH N H+R+R 
Sbjct: 65 PRVFSCNYCQRKFYSSQALGGHQNAHKRERT 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q39266|ZFP7_ARATH Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 26/31 (83%)

Query: 63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA 93
          PR ++C++C+R+F S+QALGGH N H+R+R 
Sbjct: 56 PRVFSCNYCRRKFYSSQALGGHQNAHKRERT 86

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFX4|KNU_ARATH Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1

 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 19/136 (13%)

Query: 64  RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI-------SPPTPKDIIVNNNINNASP 116
           R + C +C R+F ++QALGGH N H+R+RA  R        SPP     I+++N     P
Sbjct: 36  RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRNLGVLANSPP-----ILDDNNTFLRP 90

Query: 117 SEIKKWSALTGALRPKDSVKKNEK--SFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEI 174
                 +   G+    + +++     +  G   F  +      F LS    +     +E 
Sbjct: 91  YPCFYQNPFQGSTSGNEPLQEQPTMMTMDGYDPFHPYPYVYP-FALSGNNNDGGNGVME- 148

Query: 175 GVISDSKEDLDLELRL 190
               D   DLDL LRL
Sbjct: 149 ---EDEPLDLDLSLRL 161

May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39263|ZFP4_ARATH Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 25/29 (86%)

Query: 64  RSYTCSFCKREFRSAQALGGHMNVHRRDR 92
           R ++C++C+R+F S+QALGGH N H+R+R
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKRER 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q39261|ZFP2_ARATH Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 25/31 (80%)

Query: 63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA 93
          PR ++C++C+R+F S+QALGGH N H+ +R 
Sbjct: 49 PRVFSCNYCQRKFYSSQALGGHQNAHKLERT 79

Arabidopsis thaliana (taxid: 3702)

>sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 64 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 96
          R Y C +C REF ++QALGGH N H+++R  L+
Sbjct: 39 RKYECQYCCREFANSQALGGHQNAHKKERQLLK 71

Arabidopsis thaliana (taxid: 3702)

>sp|Q39262|ZFP3_ARATH Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 66 YTCSFCKREFRSAQALGGHMNVHRRDRA 93
          ++C++C+R F S+QALGGH N H+R+R 
Sbjct: 61 FSCNYCQRTFYSSQALGGHQNAHKRERT 88

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
224111022	213	predicted protein [Populus trichocarpa]	0.927	0.840	0.495	2e-39
224099899	215	predicted protein [Populus trichocarpa]	0.906	0.813	0.469	8e-39
255576864	230	Transcriptional regulator SUPERMAN, puta	0.958	0.804	0.483	2e-37
296083589	205	unnamed protein product [Vitis vinifera]	0.927	0.873	0.493	4e-37
225432985	207	PREDICTED: transcriptional regulator SUP	0.953	0.888	0.495	4e-36
225432983	228	PREDICTED: transcriptional regulator SUP	0.927	0.785	0.446	6e-36
296083590	202	unnamed protein product [Vitis vinifera]	0.927	0.886	0.488	4e-34
15228971	204	transcriptional regulator SUperMAN [Arab	0.746	0.705	0.440	2e-27
315661275	238	transcriptional regulator superman [Malu	0.870	0.705	0.388	6e-27
297831046	204	hypothetical protein ARALYDRAFT_479823 [	0.715	0.676	0.441	3e-26

>gi|224111022|ref|XP_002315719.1| predicted protein [Populus trichocarpa] gi|222864759|gb|EEF01890.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 128/222 (57%), Gaps = 43/222 (19%)

Query: 1   MERNIMSNSLKDHKIGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFS 60
           MERN  S++LKDH IGS             NN NS  K++DS      QS+GE+YL   S
Sbjct: 1   MERNSFSSNLKDHSIGSE----------ACNNTNSNKKLRDSWNLSSCQSFGEDYLDSLS 50

Query: 61  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNAS----- 115
           WPPRSYTCSFC+REF+SAQALGGHMNVHRRDRARLR SPP      V N   N S     
Sbjct: 51  WPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLRRSPPRDAQCPVPNLNPNPSLCPPF 110

Query: 116 --------------------PSEIKKWSALTGALRPKDS------VKKNEKSFSGAKEFG 149
                                SE+KKW+     L P  S           KSF   + FG
Sbjct: 111 TRTLPSLVSPPLSALSTPPLASEVKKWTIDGTPLDPSSSELSDLTTTGTRKSFFTTENFG 170

Query: 150 GFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLG 191
           GFT++ DGFK+ KK  EIVRLDLEIG++ DSK++LDLELRLG
Sbjct: 171 GFTQQ-DGFKIWKK-AEIVRLDLEIGLVRDSKDELDLELRLG 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099899|ref|XP_002311666.1| predicted protein [Populus trichocarpa] gi|222851486|gb|EEE89033.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/228 (46%), Positives = 133/228 (58%), Gaps = 53/228 (23%)

Query: 1   MERNIMSNSLKDHK-IGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGF 59
           MERN +S+++  H  IGSR            NN +   K++DS      QS G +YL G 
Sbjct: 1   MERNSLSSNVNGHSNIGSR----------ACNNNDKKKKLRDSWNFSSCQSNGHDYLGGL 50

Query: 60  SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDI-IVNNNINN----- 113
           SWPPRSYTC+FCKREF+SAQALGGHMNVHRRDRARLR+SPP      I+  N+N      
Sbjct: 51  SWPPRSYTCTFCKREFKSAQALGGHMNVHRRDRARLRLSPPRDDQCPILTLNLNPNPSFC 110

Query: 114 ----------ASP-----------SEIKKWSALTGALRPKD---------SVKKNEKSFS 143
                      SP           SE+KKW+   G  +P D         +  ++ KSF 
Sbjct: 111 TPFNRTIPSLVSPPLTAPSTPSLASEVKKWT--IGGGKPLDPSSPNLSDLTTNRSRKSF- 167

Query: 144 GAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLG 191
             + F GFT + DGFK+  K GEIVRLDL+IG++SDSK+DLDLELRLG
Sbjct: 168 -FENFDGFTRQ-DGFKIWNK-GEIVRLDLDIGLVSDSKDDLDLELRLG 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576864|ref|XP_002529318.1| Transcriptional regulator SUPERMAN, putative [Ricinus communis] gi|223531242|gb|EEF33087.1| Transcriptional regulator SUPERMAN, putative [Ricinus communis]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 136/238 (57%), Gaps = 53/238 (22%)

Query: 1   MERNIMSNSLKDHKIGSRFTRDSISNCNGY----NNQNSGNKMKDSCQQRQQQSYGEEYL 56
           ME+N ++NSLKDH I SR   ++ +N N        + S N   +S      QS+GE+YL
Sbjct: 1   MEKNSLNNSLKDHSIASRACNNNNNNNNNNNNNKQTRYSWNYNSNS------QSFGEDYL 54

Query: 57  SGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPP-----TPKDIIVNNNI 111
            GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR SPP     T  ++ +N N 
Sbjct: 55  GGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPRDGQCTMLNLNINPNP 114

Query: 112 NNASPS---------------------------------EIKKWSALTGALR-PKDSVKK 137
           NN +PS                                 E KKW       R P   + K
Sbjct: 115 NNRTPSSPFTCMIPSSAPAPPTTTTTISALSSPSFASSSETKKWVIDDSTFRDPISPITK 174

Query: 138 --NEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS 193
              +KS   A+EF   T+E DG K  KK  EIVRLDLEIG+ +DSKE+LDLELRLGYS
Sbjct: 175 ARTQKSLFDAEEFDELTQE-DGCKFLKK-SEIVRLDLEIGLFNDSKEELDLELRLGYS 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083589|emb|CBI23578.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 129/219 (58%), Gaps = 40/219 (18%)

Query: 1   MERNIMSNSLKDHKIGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFS 60
           MERN  +N+LKDH IG R  +D  +N          +K+KDS       SYGE+   GFS
Sbjct: 1   MERNNFNNNLKDHSIGCRGIKDCSNN----------HKVKDS-WNCNSGSYGEDCPDGFS 49

Query: 61  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIK 120
           WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR SPP      + N   N +P+   
Sbjct: 50  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPRDGQYPILNLNLNPNPNFST 109

Query: 121 KWSALTGALR--------------------------PKDSVKKNEKSFSGAKEFGGFTEE 154
             S+ +   R                          P D +K  + SF G  E+ GFT+E
Sbjct: 110 SPSSSSPPTRLPPFTRTLPSLVSSPLSSLSSPSSASPSDQMKTTQSSF-GVGEYHGFTQE 168

Query: 155 DDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS 193
           D+ +K+ KK  E VRLDLEIG++SD KEDLDLELRLGYS
Sbjct: 169 DE-YKVLKK-AEFVRLDLEIGLLSDLKEDLDLELRLGYS 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432985|ref|XP_002280772.1| PREDICTED: transcriptional regulator SUPERMAN-like [Vitis vinifera]

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 129/216 (59%), Gaps = 32/216 (14%)

Query: 1   MERNIMSNSLKDHKIGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFS 60
           MERN MSN LKDH IG R    ++ +CN   N N+   +KDS       S+ E+ L G+S
Sbjct: 1   MERNGMSNKLKDHSIGCR----AVEDCNISYNHNT---IKDSWNCYGSGSHDEDDLGGYS 53

Query: 61  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPP-----TPKDIIVNNNINNAS 115
           WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR SPP     T  ++ +  N N ++
Sbjct: 54  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRRSPPRDDQYTIPNLNLKPNPNLST 113

Query: 116 PSEIKKWSALTGALRPKDSVKKN------------------EKSFSGAKEFGGFTEEDDG 157
           PS     + L     P  S+  +                   +SFSG +EF G  +ED+ 
Sbjct: 114 PSPPSLPTRLPAFTCPLPSLAASPFSSLSSPSSASPSELNAAQSFSGVEEFNGVNQEDEC 173

Query: 158 FKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS 193
             L  K  E VRLDL+IG+ SD KEDLDLELRLGYS
Sbjct: 174 KVL--KMAEFVRLDLKIGLPSDLKEDLDLELRLGYS 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432983|ref|XP_002280764.1| PREDICTED: transcriptional regulator SUPERMAN-like [Vitis vinifera]

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 130/242 (53%), Gaps = 63/242 (26%)

Query: 1   MERNIMSNSLKDHKIGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFS 60
           MERN  +N+LKDH IG R  +D  +N          +K+KDS       SYGE+   GFS
Sbjct: 1   MERNNFNNNLKDHSIGCRGIKDCSNN----------HKVKDSWNC-NSGSYGEDCPDGFS 49

Query: 61  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRIS---------------------- 98
           WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR S                      
Sbjct: 50  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPRDGQYPILNLNLNPNPNFST 109

Query: 99  -----------PPTPKDIIVNNNINNASPS---------EIKKWSALTGALRPKDS---- 134
                      PP  + +    +   +S S         ++KKW      L P       
Sbjct: 110 SPSSSSPPTRLPPFTRTLPSLVSSPLSSLSSPSSASPSDQVKKWGVDGSMLNPLSPRVLD 169

Query: 135 ---VKKNEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLG 191
              +K  + SF G  E+ GFT+ED+ +K+ KK  E VRLDLEIG++SD KEDLDLELRLG
Sbjct: 170 LAKMKTTQSSF-GVGEYHGFTQEDE-YKVLKKA-EFVRLDLEIGLLSDLKEDLDLELRLG 226

Query: 192 YS 193
           YS
Sbjct: 227 YS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083590|emb|CBI23579.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/211 (48%), Positives = 125/211 (59%), Gaps = 32/211 (15%)

Query: 6   MSNSLKDHKIGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEEYLSGFSWPPRS 65
           MSN LKDH IG R    ++ +CN   N N+   +KDS       S+ E+ L G+SWPPRS
Sbjct: 1   MSNKLKDHSIGCR----AVEDCNISYNHNT---IKDSWNCYGSGSHDEDDLGGYSWPPRS 53

Query: 66  YTCSFCKREFRSAQALGGHMNVHRRDRARLRISPP-----TPKDIIVNNNINNASPSEIK 120
           YTCSFCKREFRSAQALGGHMNVHRRDRARLR SPP     T  ++ +  N N ++PS   
Sbjct: 54  YTCSFCKREFRSAQALGGHMNVHRRDRARLRRSPPRDDQYTIPNLNLKPNPNLSTPSPPS 113

Query: 121 KWSALTGALRPKDSVKKN------------------EKSFSGAKEFGGFTEEDDGFKLSK 162
             + L     P  S+  +                   +SFSG +EF G  +ED+   L  
Sbjct: 114 LPTRLPAFTCPLPSLAASPFSSLSSPSSASPSELNAAQSFSGVEEFNGVNQEDECKVL-- 171

Query: 163 KGGEIVRLDLEIGVISDSKEDLDLELRLGYS 193
           K  E VRLDL+IG+ SD KEDLDLELRLGYS
Sbjct: 172 KMAEFVRLDLKIGLPSDLKEDLDLELRLGYS 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228971|ref|NP_188954.1| transcriptional regulator SUperMAN [Arabidopsis thaliana] gi|30580511|sp|Q38895.1|SUP_ARATH RecName: Full=Transcriptional regulator SUPERMAN gi|1079669|gb|AAC49116.1| SUPERMAN [Arabidopsis thaliana] gi|7939521|dbj|BAA95724.1| SUPERMAN-like protein [Arabidopsis thaliana] gi|67633658|gb|AAY78753.1| superman protein [Arabidopsis thaliana] gi|225898673|dbj|BAH30467.1| hypothetical protein [Arabidopsis thaliana] gi|332643200|gb|AEE76721.1| transcriptional regulator SUperMAN [Arabidopsis thaliana] gi|1585427|prf||2124420A SUPERMAN gene

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 104/186 (55%), Gaps = 42/186 (22%)

Query: 41  DSCQQRQQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI--- 97
           D+CQQ        +YL GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR+   
Sbjct: 28  DNCQQ------DHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQS 81

Query: 98  -----------------------SPPTPKDIIVNNNINNASPSEIKKWSALTGALRPK-- 132
                                  SPP P    +      + PS  +  + L  +L PK  
Sbjct: 82  PSSSSTPSPPYPNPNYSYSTMANSPP-PHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSK 140

Query: 133 ---DSVKKNEKS--FSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLE 187
              ++  K +KS     A E   FT +D    L  +  EI+ L+LEIG+I++S++DLDLE
Sbjct: 141 HTPENACKTKKSSLLVEAGEATRFTSKDACKIL--RNDEIISLELEIGLINESEQDLDLE 198

Query: 188 LRLGYS 193
           LRLG++
Sbjct: 199 LRLGFA 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315661275|gb|ADU55566.1| transcriptional regulator superman [Malus x domestica]

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 124/260 (47%), Gaps = 92/260 (35%)

Query: 2   ERNIMSNSLKDHK-IGSRFTRDSISNCNGYNNQNSGNKMKDSCQQRQQQSYGEE--YLSG 58
           ++ ++SNSLKDH  I +R  R                        R + +Y E+     G
Sbjct: 3   KKGLVSNSLKDHAGIVTRAIR------------------------RSKTTYEEDDYNFDG 38

Query: 59  FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTP---KDIIVNNNIN--- 112
           F+WPPRSYTCSFCKREFRSAQALGGHMNVHR+DRARL+ SPP        I+N N+N   
Sbjct: 39  FAWPPRSYTCSFCKREFRSAQALGGHMNVHRKDRARLKGSPPRDSQYTSTILNLNLNKVP 98

Query: 113 NASP------------------------------------------SEIKKW----SALT 126
           N +P                                          SE  KW    +   
Sbjct: 99  NPNPNFSSTSSASSPSSPSSWISPISSTLPSLISPPAPPPVFLVPSSENMKWVVGDTLFN 158

Query: 127 GALRPKDS-----VKKNEKSFSGA--KEFGGFTEEDDGFKLSKKGGE-----IVRLDLEI 174
             L  K S     VKKN +SF G   ++  GF  E+ G   + K  +     IVRLDLEI
Sbjct: 159 HPLNFKASDFGTTVKKNAESFCGVGDRQCDGFIGEEHGCIKTVKAADHPHHPIVRLDLEI 218

Query: 175 GVISDS-KEDLDLELRLGYS 193
           G++ DS KEDLDLELRLGYS
Sbjct: 219 GMLGDSNKEDLDLELRLGYS 238

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831046|ref|XP_002883405.1| hypothetical protein ARALYDRAFT_479823 [Arabidopsis lyrata subsp. lyrata] gi|297329245|gb|EFH59664.1| hypothetical protein ARALYDRAFT_479823 [Arabidopsis lyrata subsp. lyrata] gi|336112101|gb|AEI17369.1| superman [Arabidopsis lyrata]

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 96/172 (55%), Gaps = 34/172 (19%)

Query: 54  EYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI---------------- 97
           EYL GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR+                
Sbjct: 35  EYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSSSSSSTPSPPYPN 94

Query: 98  ---------SPPTPKDIIVNNNINNASPSEIKKWSALTGALRPK-----DSVKKNEKS-- 141
                    + P P    +      + PS  +    L  +L PK     ++  + EKS  
Sbjct: 95  PNYSYSSMATSPPPHHSPLTLFPTLSPPSSPRYRPGLVRSLSPKSKHTPENACETEKSSL 154

Query: 142 FSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKEDLDLELRLGYS 193
              A E   FT +D    L  +  +I+ L+LEIG+I +S++DLDLELRLG++
Sbjct: 155 LVEAGEAKRFTSKDACKIL--RNDDIISLELEIGLIKESEQDLDLELRLGFA 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2086268	204	SUP "AT3G23130" [Arabidopsis t	0.331	0.313	0.68	3.3e-30
TAIR|locus:2053796	214	ZFP11 "AT2G42410" [Arabidopsis	0.471	0.425	0.475	4.1e-21
TAIR|locus:2040726	304	ZFP10 "AT2G37740" [Arabidopsis	0.259	0.164	0.7	1.4e-20
TAIR|locus:2129495	204	AT4G17810 "AT4G17810" [Arabido	0.248	0.235	0.72	3.9e-19
TAIR|locus:505006582	226	RBE "AT5G06070" [Arabidopsis t	0.647	0.553	0.380	2.3e-16
TAIR|locus:2083574	172	TAC1 "AT3G09290" [Arabidopsis	0.652	0.732	0.350	4.4e-13
TAIR|locus:2158367	137	AT5G43540 "AT5G43540" [Arabido	0.150	0.211	0.758	8.6e-13
TAIR|locus:2084390	142	AT3G53820 "AT3G53820" [Arabido	0.616	0.838	0.335	1.2e-10
TAIR|locus:2086193	172	URO "AT3G23140" [Arabidopsis t	0.316	0.354	0.409	2e-08
TAIR|locus:2054548	156	AT2G28710 "AT2G28710" [Arabido	0.621	0.769	0.312	1.2e-06

TAIR|locus:2086268 SUP "AT3G23130" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 51/75 (68%), Positives = 54/75 (72%)

Query:    41 DSCQQRQQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI--S 98
             D+CQQ        +YL GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR+  S
Sbjct:    28 DNCQQ------DHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQS 81

Query:    99 PP---TPKDIIVNNN 110
             P    TP     N N
Sbjct:    82 PSSSSTPSPPYPNPN 96

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP;TAS

GO:0003677 "DNA binding" evidence=IDA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009755 "hormone-mediated signaling pathway" evidence=IMP

GO:0010160 "formation of organ boundary" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IGI;RCA

GO:0048440 "carpel development" evidence=RCA

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2053796 ZFP11 "AT2G42410" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 48/101 (47%), Positives = 62/101 (61%)

Query:    53 EEYLSGF-SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISP-----PTPKDII 106
             + Y +G   WPP++YTCSFC+REFRSAQALGGHMNVHRRDRA+LR  P     P     I
Sbjct:    35 KNYEAGLIPWPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFEPHHHTPI 94

Query:   107 VNNNINNASPSEIKKWSALTGALRPKDSVKKNEKS-FSGAK 146
              N N N +S S     S  T  L P  + ++++ + F  A+
Sbjct:    95 ANPNPNFSSSSSS---STTTAHLEPSLTNQRSKTTPFPSAR 132

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2040726 ZFP10 "AT2G37740" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query:    47 QQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 96
             ++ ++ E+  +G  WPPRSYTCSFC+REF+SAQALGGHMNVHRRDRARL+
Sbjct:    20 EELAFAEDDAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLK 69

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2129495 AT4G17810 "AT4G17810" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query:    47 QQQSYGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 96
             +Q + G   +SG +WPPRSYTC+FC+REFRSAQALGGHMNVHRRDRA  R
Sbjct:    29 EQDTKGN--ISGTTWPPRSYTCNFCRREFRSAQALGGHMNVHRRDRASSR 76

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:505006582 RBE "AT5G06070" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 54/142 (38%), Positives = 79/142 (55%)

Query:    46 RQQQSYG--EEYLSGFS--WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPT 101
             R+++++   EEY  G    WPPRSY+CSFC REF+SAQALGGHMNVHRRDRARL+    +
Sbjct:    31 REERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLS 90

Query:   102 PKDIIVNNNINNASPSEIKKWSALTGALRPKDSVKKNEKSFSGAK-EFGGFTE----EDD 156
             P      ++ + A+P E  +   +   +  K  V++  +  +G K E          E  
Sbjct:    91 P------SSTDQATPPECDRQQQVLD-VGSKVLVQEETRKPNGTKREISDVCNNNVLESS 143

Query:   157 GFKLSKKGGEIVRLDLEIGVIS 178
               +     GE V+ DL +G++S
Sbjct:   144 MKRYEHDNGE-VKTDLSVGLLS 164

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009934 "regulation of meristem structural organization" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048441 "petal development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

GO:0009409 "response to cold" evidence=IEP

TAIR|locus:2083574 TAC1 "AT3G09290" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 48/137 (35%), Positives = 70/137 (51%)

Query:    64 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR--ISPPTPKDIIVNNNINNASPSEIKK 121
             RSY CSFC R F +AQALGGHMN+HRRDRA+LR  +      D++  ++ +     ++ +
Sbjct:    33 RSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQKLMEDNKDDVVAESDASEVVSLDLNE 92

Query:   122 WSALTG-ALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKG-GEIVRLDLEIGVISD 179
                  G AL   D  +  +   S  ++   + +E    KL     G++    ++ G  S 
Sbjct:    93 QQQQQGEALTCDDHDQYVDNDISPKQKLEFWVQES---KLDTNDHGKVTEASID-GSSSS 148

Query:   180 SKED---LDLELRLGYS 193
                D   LDLELRLG S
Sbjct:   149 HHRDIEVLDLELRLGQS 165

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0051973 "positive regulation of telomerase activity" evidence=IGI

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2158367 AT5G43540 "AT5G43540" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
 Identities = 22/29 (75%), Positives = 25/29 (86%)

Query:    64 RSYTCSFCKREFRSAQALGGHMNVHRRDR 92
             R Y C+FCKR F +AQALGGHMN+HRRDR
Sbjct:    33 RMYECTFCKRGFTNAQALGGHMNIHRRDR 61

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2084390 AT3G53820 "AT3G53820" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 49/146 (33%), Positives = 70/146 (47%)

Query:    54 EYLS--GFSWP---PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR---ISPPTPKDI 105
             +YL    +SW     R Y C FC+R F +AQALGGHMN+HR+DRA+LR   +     +D 
Sbjct:     4 KYLDRRSYSWSGSQARPYICEFCERGFSNAQALGGHMNIHRKDRAKLRQANLKEEDSEDA 63

Query:   106 IVNNNINNASPSEIKKWSALTGALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGG 165
             I   + N     E+ +       + P+   +K E   S  K  G   EE    ++ +K  
Sbjct:    64 ICTTSRNRFG-QELIELPFFVDTVGPR---RKGEDDKS-EKGLGD--EEKKNMRILQKA- 115

Query:   166 EIVRLDLEIGVISDSKEDLDLELRLG 191
                        +S S + +DLELRLG
Sbjct:   116 -----------LSQSADVIDLELRLG 130

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2086193 URO "AT3G23140" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query:    57 SGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASP 116
             SG     R+Y C  CKR F + QALGGH N+HRR+R R   S  +      +  + + SP
Sbjct:    12 SGSGENRRTYDCDICKRGFTNPQALGGHNNIHRRERERYPSSSSSSHSFPFSLPLPSQSP 71

Query:   117 S 117
             S
Sbjct:    72 S 72

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010252 "auxin homeostasis" evidence=IMP

TAIR|locus:2054548 AT2G28710 "AT2G28710" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 39/125 (31%), Positives = 53/125 (42%)

Query:    64 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIKKWS 123
             R + C  C +EF S QALGGH   HRR  A    +PP+PK +    +      +E     
Sbjct:    32 RVFACKTCNKEFPSFQALGGHRASHRRSAALEGHAPPSPKRVKPVKHECPICGAEFAVGQ 91

Query:   124 ALTGALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRLDLEIGVISDSKED 183
             AL G +R            S A      T +  G      G  ++ LDL +  + +  ED
Sbjct:    92 ALGGHMRKHRGGSGGGGGRSLAPATAPVTMKKSG---GGNGKRVLCLDLNLTPLEN--ED 146

Query:   184 LDLEL 188
             L LEL
Sbjct:   147 LKLEL 151

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_X000691 hypothetical protein (213 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	8e-05
cd11674	1166	cd11674, lambda-1, inner capsid protein lambda-1 o	0.002
smart00355	23	smart00355, ZnF_C2H2, zinc finger	0.002

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 38.0 bits (89), Expect = 8e-05
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 66 YTCSFCKREFRSAQALGGHMNVHRR 90
          +TC  C + F S QALGGH   H  
Sbjct: 2  HTCGVCGKTFSSLQALGGHKKSHCS 26

Length = 27

>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 12/75 (16%)

Query: 63  PRSYTCSFCKREFRSAQALGGHMNV-HRRDRARLRISPPTPKDIIVNNNINNASPSEIKK 121
           P SY C+ C  EF S   L  H    H    + L  SP           IN A  S +  
Sbjct: 71  PSSYVCNVCMAEFSSMDQLAEHQRTTHSIGASSLLTSP----------AINQAIESFLTS 120

Query: 122 WSALTGALRPKDSVK 136
           W     A        
Sbjct: 121 WDDAR-ATSKSVLSV 134

The reovirus inner capsid protein lambda-1 displays nucleoside triphosphate phosphohydrolase (NTPase), RNA-5'-triphosphatase (RTPase), and RNA helicase activity and may play a role in the transcription of the virus genome, the unwinding or reannealing of double-stranded RNA during RNA synthesis. The RTPase activity constitutes the first step in the capping of RNA, resulting in a 5'-diphosphorylated RNA plus-strand. lambda1 is an Orthoreovirus core protein, VP3 is the homologous core protein in Aquareoviruses. Length = 1166

>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 66 YTCSFCKREFRSAQALGGHMNVH 88
          Y C  C + F+S  AL  HM  H
Sbjct: 1  YRCPECGKVFKSKSALREHMRTH 23

Length = 23

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	98.05
PHA00616	44	hypothetical protein	98.02
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.91
PHA02768	55	hypothetical protein; Provisional	97.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.67
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.56
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	97.54
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	97.48
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	97.45
smart00355	26	ZnF_C2H2 zinc finger.	97.29
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	96.87
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	96.72
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.37
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.29
KOG3576	267	consensus Ovo and related transcription factors [T	96.26
PHA00732	79	hypothetical protein	96.06
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.7
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	95.64
PHA00733	128	hypothetical protein	95.18
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.06
COG5189	423	SFP1 Putative transcriptional repressor regulating	94.59
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	93.74
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.68
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.65
PHA00733	128	hypothetical protein	92.24
KOG3576	267	consensus Ovo and related transcription factors [T	91.84
KOG3993	500	consensus Transcription factor (contains Zn finger	91.49
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	91.11
KOG3993	500	consensus Transcription factor (contains Zn finger	89.76
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	83.31
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	83.11
KOG3608	467	consensus Zn finger proteins [General function pre	81.15

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=98.05  E-value=2.1e-06  Score=76.89  Aligned_cols=35  Identities=20%  Similarity=0.498  Sum_probs=28.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+++||||.|+.|+|+|..+++|+.||++|.+.|.
T Consensus       209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~  243 (279)
T KOG2462|consen  209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK  243 (279)
T ss_pred             cccCCCCccCCcccchhcchHHHHHHHHhhcCCcc
Confidence            56788888888888888888888888888887764

>PHA00616 hypothetical protein

Probab=98.02  E-value=1.7e-06  Score=58.48  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=27.5

Q ss_pred             ccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ||+|..||+.|..++.|..|++.|+++++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            69999999999999999999999999875

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.91  E-value=3.4e-06  Score=47.64  Aligned_cols=23  Identities=39%  Similarity=0.856  Sum_probs=21.8

Q ss_pred             cccCcccccccCcchHHHHhhhc
Q 041626           66 YTCSFCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~H   88 (193)
                      |+|+.|++.|+++..|..||+.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA02768 hypothetical protein; Provisional

Probab=97.90  E-value=4.2e-06  Score=58.87  Aligned_cols=24  Identities=21%  Similarity=0.617  Sum_probs=23.5

Q ss_pred             cccCcccccccCcchHHHHhhhcC
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |+|+.|||.|++.++|..||++|+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            799999999999999999999999

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.67  E-value=1.7e-05  Score=46.40  Aligned_cols=26  Identities=31%  Similarity=0.598  Sum_probs=24.2

Q ss_pred             ccccCcccccccCcchHHHHhhhcCC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      ||+|..|++.|.+..+|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999999864

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.56  E-value=3e-05  Score=42.85  Aligned_cols=24  Identities=38%  Similarity=0.891  Sum_probs=20.3

Q ss_pred             cccCcccccccCcchHHHHhhhcC
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |.|++|++.|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999998873

...

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=97.54  E-value=2.8e-05  Score=69.72  Aligned_cols=30  Identities=23%  Similarity=0.617  Sum_probs=25.8

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      -+++|.+|||.|.+.--|++|+|+|+||||
T Consensus       186 l~c~C~iCGKaFSRPWLLQGHiRTHTGEKP  215 (279)
T KOG2462|consen  186 LPCECGICGKAFSRPWLLQGHIRTHTGEKP  215 (279)
T ss_pred             CCcccccccccccchHHhhcccccccCCCC
Confidence            467888888888888888888888988887

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=97.48  E-value=4e-05  Score=77.17  Aligned_cols=35  Identities=29%  Similarity=0.584  Sum_probs=32.1

Q ss_pred             CCCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           58 GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        58 ~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +.+.+||||+|++|||+|+++.+|+.||-+|....
T Consensus       626 rtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p  660 (958)
T KOG1074|consen  626 RTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKP  660 (958)
T ss_pred             hcccCcCccccccccchhccccchhhcccccccCc
Confidence            56889999999999999999999999999998554

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=97.45  E-value=4.4e-05  Score=76.30  Aligned_cols=35  Identities=26%  Similarity=0.578  Sum_probs=33.0

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+++.|||+|.+|.|+|..+.+|..|+|.|.||||
T Consensus       916 EHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP  950 (1007)
T KOG3623|consen  916 EHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP  950 (1007)
T ss_pred             hhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCc
Confidence            47889999999999999999999999999999998

>smart00355 ZnF_C2H2 zinc finger

Probab=97.29  E-value=0.00013  Score=40.34  Aligned_cols=24  Identities=42%  Similarity=0.823  Sum_probs=22.5

Q ss_pred             cccCcccccccCcchHHHHhhhcC
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |+|+.|++.|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999885

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=96.87  E-value=0.0003  Score=70.52  Aligned_cols=33  Identities=21%  Similarity=0.563  Sum_probs=30.8

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +..|.|+|..|+|+|.-+.+|+.|.|+|.||||
T Consensus       277 a~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKP  309 (1007)
T KOG3623|consen  277 ALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKP  309 (1007)
T ss_pred             hhhccccccccchhhhhHHHHHhhheeecCCCC
Confidence            455889999999999999999999999999998

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=96.72  E-value=0.00047  Score=40.87  Aligned_cols=18  Identities=22%  Similarity=0.800  Sum_probs=16.1

Q ss_pred             CCCCcccccCcccccccC
Q 041626           60 SWPPRSYTCSFCKREFRS   77 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~s   77 (193)
                      +.+++||+|++|+|.|.+
T Consensus         9 H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    9 HTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HSSSSSEEESSSSEEESS
T ss_pred             cCCCCCCCCCCCcCeeCc
Confidence            578999999999999974

...

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.37  E-value=0.0013  Score=37.64  Aligned_cols=23  Identities=26%  Similarity=0.767  Sum_probs=21.4

Q ss_pred             cccCcccccccCcchHHHHhhhc
Q 041626           66 YTCSFCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~H   88 (193)
                      |.|.+|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999999875

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.29  E-value=0.0019  Score=45.47  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=24.1

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ..-+.|..|++|+..+++..+|.+|+.++++.||
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3456788999999999999999999988777765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=96.26  E-value=0.001  Score=58.70  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=28.5

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +..-|.|.|.+|||.|...-+|.+|+|+|+|.||
T Consensus       140 h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp  173 (267)
T KOG3576|consen  140 HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP  173 (267)
T ss_pred             ccHHHHHHHhhccCcccchhhhhhhhccccCccc
Confidence            4455778888999999999999999999998887

>PHA00732 hypothetical protein

Probab=96.06  E-value=0.0031  Score=46.70  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=23.3

Q ss_pred             ccccCcccccccCcchHHHHhhh-cCC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNV-HRR   90 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~-Htg   90 (193)
                      ||.|+.|++.|.+...|..|++. |++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC
Confidence            68999999999999999999984 653

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.70  E-value=0.0034  Score=37.02  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=21.2

Q ss_pred             ccccCcccccccCcchHHHHhhhc
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~H   88 (193)
                      .|-|..|++.|.+..++..|++.+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            378999999999999999999753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=95.64  E-value=0.0054  Score=62.34  Aligned_cols=28  Identities=32%  Similarity=0.641  Sum_probs=23.0

Q ss_pred             cccCcccccccCcchHHHHhhhcCCcCc
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.|..|+|.|.+..+|..|||+|+++|+
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KP  907 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKP  907 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCC
Confidence            6788888888888888888888888877

>PHA00733 hypothetical protein

Probab=95.18  E-value=0.012  Score=46.87  Aligned_cols=28  Identities=25%  Similarity=0.514  Sum_probs=25.4

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~H   88 (193)
                      .+.+||.|+.|++.|.+...|..|++.|
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h   96 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYT   96 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcC
Confidence            3478999999999999999999999977

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.06  E-value=0.0076  Score=34.37  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=18.7

Q ss_pred             cccCcccccccCcchHHHHhhhcC
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |+|+.|..... ...|..|++.|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999998 889999998864

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=94.59  E-value=0.012  Score=54.79  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=31.8

Q ss_pred             cccccCCCCCCCcccccCcccccccCcchHHHHhh
Q 041626           52 GEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHMN   86 (193)
Q Consensus        52 ~~~~~~~~~~~eKpYkC~~CgKsF~skqaL~~Hmr   86 (193)
                      +++-+++|.+..|||.|++|+|.+....-|+-|+.
T Consensus       385 ~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         385 SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CccccccccccCCceeccccchhhccCccceeccc
Confidence            56678999999999999999999999999999954

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=93.74  E-value=0.033  Score=39.56  Aligned_cols=25  Identities=40%  Similarity=0.925  Sum_probs=21.9

Q ss_pred             ccccCcccccccCcchHHHHhhhcC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      .+.|.+|++.|.+..+|..||+.|.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            6899999999999999999999753

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.68  E-value=0.059  Score=31.90  Aligned_cols=21  Identities=29%  Similarity=0.741  Sum_probs=17.7

Q ss_pred             cccCcccccccCcchHHHHhhh
Q 041626           66 YTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      ..|+.|++.| ...+|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 67779999864

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.65  E-value=0.058  Score=32.66  Aligned_cols=23  Identities=17%  Similarity=0.605  Sum_probs=20.8

Q ss_pred             ccccCcccccccCcchHHHHhhh
Q 041626           65 SYTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      +|.|.+|++.|.+..++..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PHA00733 hypothetical protein

Probab=92.24  E-value=0.083  Score=42.04  Aligned_cols=27  Identities=26%  Similarity=0.541  Sum_probs=23.9

Q ss_pred             CcccccCcccccccCcchHHHHhhhcC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      +.+|.|+.|++.|....+|..|++.++
T Consensus        97 ~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         97 EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            457999999999999999999997654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=91.84  E-value=0.064  Score=47.59  Aligned_cols=32  Identities=31%  Similarity=0.631  Sum_probs=27.9

Q ss_pred             CCCCCCcccccCcccccccCcchHHHHhh-hcC
Q 041626           58 GFSWPPRSYTCSFCKREFRSAQALGGHMN-VHR   89 (193)
Q Consensus        58 ~~~~~eKpYkC~~CgKsF~skqaL~~Hmr-~Ht   89 (193)
                      -.+++-+||+|..|+|+|+++-.|..|.+ +|.
T Consensus       166 rthtgvrpykc~~c~kaftqrcsleshl~kvhg  198 (267)
T KOG3576|consen  166 RTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHG  198 (267)
T ss_pred             ccccCccccchhhhhHHHHhhccHHHHHHHHcC
Confidence            35778899999999999999999999975 453

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=91.49  E-value=0.1  Score=50.13  Aligned_cols=25  Identities=28%  Similarity=0.679  Sum_probs=23.7

Q ss_pred             ccccCcccccccCcchHHHHhhhcC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      -|+|+.|+|.|....+|--|+|.|.
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccC
Confidence            4999999999999999999999995

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=91.11  E-value=0.13  Score=30.28  Aligned_cols=14  Identities=29%  Similarity=0.544  Sum_probs=12.7

Q ss_pred             hHHHHhhhcCCcCc
Q 041626           80 ALGGHMNVHRRDRA   93 (193)
Q Consensus        80 aL~~Hmr~HtgER~   93 (193)
                      +|..||++|+++|+
T Consensus         1 ~l~~H~~~H~~~k~   14 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP   14 (26)
T ss_dssp             HHHHHHHHHSSSSS
T ss_pred             CHHHHhhhcCCCCC
Confidence            58999999999987

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=89.76  E-value=0.11  Score=49.77  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=27.7

Q ss_pred             CCCCCCCcccccCcccccccCcchHHHHhhhcCC
Q 041626           57 SGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        57 ~~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      .|..+..--|.|.+|+|.|++...|+.|+.+|..
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence            4444444479999999999999999999988763

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=83.31  E-value=0.84  Score=30.80  Aligned_cols=26  Identities=38%  Similarity=0.856  Sum_probs=17.1

Q ss_pred             ccccCcccccccCcchHHHHhh-hcCCc
Q 041626           65 SYTCSFCKREFRSAQALGGHMN-VHRRD   91 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr-~HtgE   91 (193)
                      .|.|++|++.| +...|..|.. .|..+
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~   28 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDEHRSE   28 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhHCcCC
Confidence            37788888844 4567888854 45544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=83.11  E-value=0.88  Score=30.69  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=17.0

Q ss_pred             ccCcccccccCcchHHHHhhhcC
Q 041626           67 TCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        67 kC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      .|++|...++.  .|..|++.+.
T Consensus        33 ~CPiC~~~~~~--~l~~Hl~~~H   53 (54)
T PF05605_consen   33 VCPICSSRVTD--NLIRHLNSQH   53 (54)
T ss_pred             cCCCchhhhhh--HHHHHHHHhc
Confidence            49999997664  8999998764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=81.15  E-value=0.78  Score=43.64  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             CCCCCCcccccCcccccccCcchHHHHhhhcC
Q 041626           58 GFSWPPRSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        58 ~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      -.++..|||+|..|++.|.+-+.|.+|..+|.
T Consensus       285 ~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  285 YRHSKDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             hhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence            34566788888888888888888888888886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2l1o_A	39	Zinc To Cadmium Replacement In The A. Thaliana Supe		9e-13

>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman Cys2his2 Zinc Finger Induces Structural Rearrangements Of Typical Dna Base Determinant Positions Length = 39

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 61 WPPRSYTCSFCKREFRSAQALGGHMNVH 88
          WPPRSYTCSFCKREFRSAQALGGHMNVH
Sbjct: 2  WPPRSYTCSFCKREFRSAQALGGHMNVH 29

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	5e-22

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 82.9 bits (205), Expect = 5e-22
 Identities = 36/37 (97%), Positives = 37/37 (100%)

Query: 61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI 97
          WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR+
Sbjct: 2  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.85
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.83
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.76
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.73
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.72
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.71
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.7
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.69
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.69
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.69
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.68
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.68
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.68
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.68
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.67
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.67
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.67
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.67
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.66
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.66
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.66
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.66
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.66
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.66
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.65
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.65
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.65
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.65
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.65
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.64
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.64
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.63
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.63
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.63
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.07
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.63
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.63
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.62
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.62
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.61
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.61
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.61
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.6
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.59
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.59
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.59
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.59
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.59
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.57
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.57
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.57
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.56
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.56
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.56
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.55
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.54
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.53
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.52
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.47
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.81
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.38
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.38
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.37
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.36
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.35
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.33
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.32
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.28
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.27
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.27
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.26
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.25
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.24
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.2
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.19
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.1
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.03
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.02
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.02
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.0
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.99
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	97.99
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	97.97
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	97.97
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.96
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.96
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	97.96
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.95
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	97.95
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.94
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.93
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	97.92
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.91
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	97.91
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.9
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.89
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.89
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	97.88
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	97.87
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	97.87
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	97.85
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.85
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.84
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	97.84
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	97.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	97.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	97.73
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.73
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.72
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	97.7
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.68
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	97.68
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.68
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.66
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	97.65
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.64
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	97.62
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	97.62
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	97.61
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.6
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.59
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	97.58
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.55
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	97.53
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.48
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.47
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	97.45
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.41
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.37
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.35
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.34
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.34
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.31
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.27
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.24
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	97.15
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	97.12
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	97.02
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.99
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	96.88
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.46
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.25
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	95.81
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	95.29
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	94.94
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	94.36
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.25
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	88.55
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.07
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	82.88
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	81.75

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.85  E-value=1.2e-09  Score=62.85  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=31.3

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|.|.+|++.|.+...|..|+++|+++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            4678999999999999999999999999998874

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.85  E-value=1.3e-09  Score=63.06  Aligned_cols=34  Identities=24%  Similarity=0.503  Sum_probs=31.4

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.+++||.|.+|++.|.+...|..|+++|+++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            4678999999999999999999999999998875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.3e-09  Score=63.82  Aligned_cols=35  Identities=20%  Similarity=0.553  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|.+|++.|.+...|..|+++|+++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            35688999999999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.83  E-value=1.6e-09  Score=64.64  Aligned_cols=36  Identities=100%  Similarity=1.728  Sum_probs=32.9

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCcCCC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   96 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~~~~   96 (193)
                      ++++||.|++|++.|.+...|..|+++|+++++-.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            578999999999999999999999999999987554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=2.2e-09  Score=62.26  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=31.4

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .+.++++|.|++|++.|.+...|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4678899999999999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.7e-09  Score=62.67  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .+.+++||+|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4678899999999999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=62.75  Aligned_cols=35  Identities=29%  Similarity=0.563  Sum_probs=31.8

Q ss_pred             CCCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           58 GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        58 ~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ..+++++||+|++|++.|.+...|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            35678999999999999999999999999999875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.3e-09  Score=62.52  Aligned_cols=34  Identities=21%  Similarity=0.662  Sum_probs=31.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ...+++||.|++|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4567899999999999999999999999999875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.4e-09  Score=67.19  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             CCCCCCcccccCc--ccccccCcchHHHHhhhcCCcC
Q 041626           58 GFSWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        58 ~~~~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      |...+++||+|++  |+|.|.+++.|..||++|+++.
T Consensus         2 ~~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            2 SSGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CCSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            5677899999986  9999999999999999999863

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3e-09  Score=62.02  Aligned_cols=34  Identities=26%  Similarity=0.466  Sum_probs=31.0

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ...+++||+|.+|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3567899999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.76  E-value=3.4e-09  Score=61.71  Aligned_cols=31  Identities=19%  Similarity=0.495  Sum_probs=29.1

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDRAR   94 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER~~   94 (193)
                      +||.|++|++.|.....|..|+++|+++++-
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            5899999999999999999999999999874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.9e-09  Score=62.88  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.....|..|+++|+++++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            46688999999999999999999999999998875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.72  E-value=3.8e-09  Score=58.04  Aligned_cols=30  Identities=27%  Similarity=0.729  Sum_probs=27.9

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++||.|..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            478999999999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=4.5e-09  Score=61.60  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CCCCCcccccCcccccccCc-chHHHHhhhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSA-QALGGHMNVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~sk-qaL~~Hmr~HtgER   92 (193)
                      .+.+++||+|++|++.|.+. ..|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            45688999999999999999 99999999998875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.2e-09  Score=63.66  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            46788999999999999999999999999998875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9e-09  Score=63.29  Aligned_cols=35  Identities=23%  Similarity=0.568  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.++..|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP   40 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=7.4e-09  Score=62.01  Aligned_cols=35  Identities=26%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG   38 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=7.5e-09  Score=62.36  Aligned_cols=35  Identities=29%  Similarity=0.584  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            35678999999999999999999999999998875

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=6.7e-09  Score=62.22  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A            5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998875

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8.8e-09  Score=63.15  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enf_A            6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP   40 (46)
T ss_dssp             CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC
Confidence            45678999999999999999999999999998876

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.69  E-value=7.3e-09  Score=62.23  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            35678999999999999999999999999998875

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.69  E-value=6.7e-09  Score=62.21  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ...+++||+|++|++.|.+...|..|+++|+++++
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            46678999999999999999999999999998875

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8.6e-09  Score=63.38  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoh_A            6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS   40 (46)
T ss_dssp             SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.69  E-value=5.8e-09  Score=57.41  Aligned_cols=29  Identities=21%  Similarity=0.552  Sum_probs=27.2

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999875

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.4e-09  Score=63.03  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2emg_A            6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP   40 (46)
T ss_dssp             CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=6.5e-09  Score=63.67  Aligned_cols=35  Identities=20%  Similarity=0.544  Sum_probs=32.4

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS   40 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.68  E-value=3.7e-09  Score=71.93  Aligned_cols=32  Identities=25%  Similarity=0.535  Sum_probs=16.5

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .+++||.|++|+|.|.+...|..||++|++++
T Consensus        28 t~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           28 LGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             HTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            34555555555555555555555555555443

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.3e-09  Score=63.41  Aligned_cols=35  Identities=29%  Similarity=0.575  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP   40 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCC
Confidence            46788999999999999999999999999998875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1e-08  Score=62.83  Aligned_cols=35  Identities=23%  Similarity=0.510  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.++..|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq2_A            6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP   40 (46)
T ss_dssp             SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            36688999999999999999999999999998875

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.1e-08  Score=63.09  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP   40 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.2e-09  Score=62.16  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            36688999999999999999999999999998875

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=5.4e-09  Score=62.80  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP   39 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.8e-09  Score=62.95  Aligned_cols=35  Identities=20%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2yti_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP   40 (46)
T ss_dssp             CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC
T ss_pred             CCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCC
Confidence            35678999999999999999999999999998875

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.2e-08  Score=62.52  Aligned_cols=35  Identities=20%  Similarity=0.482  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytn_A            6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP   40 (46)
T ss_dssp             CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC
Confidence            35688999999999999999999999999998875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.2e-08  Score=62.65  Aligned_cols=35  Identities=20%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yth_A            6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP   40 (46)
T ss_dssp             CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC
T ss_pred             CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            35678999999999999999999999999998875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.67  E-value=1.3e-08  Score=62.35  Aligned_cols=35  Identities=26%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2em0_A            6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP   40 (46)
T ss_dssp             CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            35688999999999999999999999999998876

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=8.3e-09  Score=63.44  Aligned_cols=35  Identities=26%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytp_A            6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP   40 (46)
T ss_dssp             SSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC
T ss_pred             CcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.2e-08  Score=62.37  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep1_A            6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP   40 (46)
T ss_dssp             CCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998876

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.67  E-value=1.1e-08  Score=59.64  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++
T Consensus         5 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             cCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            356889999999999999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.67  E-value=8e-09  Score=56.64  Aligned_cols=29  Identities=31%  Similarity=0.753  Sum_probs=27.1

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +||.|++|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.2e-09  Score=62.89  Aligned_cols=35  Identities=20%  Similarity=0.438  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytf_A            6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP   40 (46)
T ss_dssp             SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS
T ss_pred             CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            36788999999999999999999999999998875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.67  E-value=1.7e-09  Score=62.47  Aligned_cols=30  Identities=23%  Similarity=0.465  Sum_probs=28.4

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +||+|++|+|.|.+...|..|+++|+++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            589999999999999999999999999876

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=8.6e-09  Score=63.37  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=32.4

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.....|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em4_A            6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP   40 (46)
T ss_dssp             CCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred             ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            46788999999999999999999999999998876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.66  E-value=1.4e-08  Score=62.45  Aligned_cols=35  Identities=20%  Similarity=0.446  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.++..|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ely_A            6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP   40 (46)
T ss_dssp             CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS
T ss_pred             CCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998875

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.1e-08  Score=62.60  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p   40 (46)
T 2yts_A            6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP   40 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS
T ss_pred             CCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC
Confidence            46678999999999999999999999999998875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.1e-08  Score=62.95  Aligned_cols=35  Identities=20%  Similarity=0.489  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2en9_A            6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP   40 (46)
T ss_dssp             SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998876

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=7.4e-09  Score=56.42  Aligned_cols=29  Identities=24%  Similarity=0.662  Sum_probs=27.2

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999998875

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=1e-08  Score=62.51  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS   38 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC
Confidence            35678999999999999999999999999998875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1e-08  Score=62.90  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emi_A            6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP   40 (46)
T ss_dssp             SCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC
T ss_pred             ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC
Confidence            35678999999999999999999999999998875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.1e-08  Score=62.15  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.....|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG   40 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC
Confidence            36788999999999999999999999999998875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.3e-08  Score=62.59  Aligned_cols=35  Identities=26%  Similarity=0.597  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em6_A            6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP   40 (46)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            35688999999999999999999999999998875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.66  E-value=4.5e-09  Score=71.49  Aligned_cols=31  Identities=32%  Similarity=0.714  Sum_probs=30.0

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ||||+|++|+|.|.+...|..|+++|+++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp   32 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRP   32 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcC
Confidence            7999999999999999999999999999986

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9.3e-09  Score=62.87  Aligned_cols=35  Identities=23%  Similarity=0.508  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eow_A            6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP   40 (46)
T ss_dssp             CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC
T ss_pred             CCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC
Confidence            36788999999999999999999999999998875

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.4e-08  Score=62.38  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT   40 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC
Confidence            46788999999999999999999999999998875

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9.9e-09  Score=62.20  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eoj_A            6 SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG   40 (44)
T ss_dssp             SSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS
T ss_pred             ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998875

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1e-08  Score=61.99  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eof_A            6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG   40 (44)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.66  E-value=9.6e-09  Score=63.15  Aligned_cols=35  Identities=17%  Similarity=0.482  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emj_A            6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP   40 (46)
T ss_dssp             CCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS
T ss_pred             CCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            45678999999999999999999999999998875

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.2e-08  Score=62.29  Aligned_cols=35  Identities=20%  Similarity=0.449  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP   40 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            35678999999999999999999999999998875

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.2e-08  Score=62.56  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP   40 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC
T ss_pred             CCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            46688999999999999999999999999998875

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.65  E-value=1.3e-08  Score=62.27  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2el4_A            6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP   40 (46)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC
T ss_pred             CCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            46688999999999999999999999999998875

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.4e-08  Score=62.06  Aligned_cols=35  Identities=23%  Similarity=0.442  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP   40 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC
Confidence            35688999999999999999999999999998875

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.3e-08  Score=62.44  Aligned_cols=35  Identities=23%  Similarity=0.522  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq1_A            6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP   40 (46)
T ss_dssp             CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC
T ss_pred             ccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.4e-08  Score=62.44  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP   40 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS
T ss_pred             CcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.3e-08  Score=62.34  Aligned_cols=35  Identities=17%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP   40 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC
Confidence            46688999999999999999999999999998875

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.3e-08  Score=62.15  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2epw_A            6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH   40 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC
T ss_pred             cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1e-08  Score=62.30  Aligned_cols=35  Identities=26%  Similarity=0.449  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP   38 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            35788999999999999999999999999998875

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.4e-08  Score=62.03  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eop_A            6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP   40 (46)
T ss_dssp             SCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC
T ss_pred             ccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            35688999999999999999999999999998875

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=3.1e-09  Score=58.75  Aligned_cols=30  Identities=30%  Similarity=0.770  Sum_probs=27.7

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++||.|+.|++.|.+...|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            478999999999999999999999998764

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.4e-08  Score=62.24  Aligned_cols=35  Identities=20%  Similarity=0.486  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.++..|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP   40 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC
Confidence            35688999999999999999999999999998875

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.2e-08  Score=62.67  Aligned_cols=35  Identities=17%  Similarity=0.457  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP   40 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998875

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.2e-08  Score=62.10  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.....|..|+++|+++++
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG   40 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC
Confidence            35678999999999999999999999999998875

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.64  E-value=1.4e-08  Score=62.41  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emk_A            6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP   40 (46)
T ss_dssp             CCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC
T ss_pred             ccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            45688999999999999999999999999998875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-08  Score=61.71  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.....|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2emb_A            6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG   40 (44)
T ss_dssp             CCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC
T ss_pred             ccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            35678999999999999999999999999998875

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-08  Score=62.46  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=32.4

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP   40 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998875

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.2e-08  Score=62.60  Aligned_cols=35  Identities=20%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.++..|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ep3_A            6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP   40 (46)
T ss_dssp             SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            35678999999999999999999999999998875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.64  E-value=1.6e-08  Score=57.24  Aligned_cols=30  Identities=27%  Similarity=0.571  Sum_probs=27.9

Q ss_pred             CcccccC--cccccccCcchHHHHhhhcCCcC
Q 041626           63 PRSYTCS--FCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        63 eKpYkC~--~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++||.|+  .|++.|.+...|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4799999  89999999999999999999875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.1e-08  Score=62.68  Aligned_cols=35  Identities=20%  Similarity=0.517  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2em3_A            6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP   40 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            35678999999999999999999999999998875

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.4e-08  Score=62.25  Aligned_cols=35  Identities=26%  Similarity=0.546  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eml_A            6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP   40 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC
T ss_pred             CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC
Confidence            35678999999999999999999999999998875

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.2e-08  Score=62.51  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.++..|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP   40 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            36688999999999999999999999999998875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=1.1e-08  Score=62.62  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+++++||+|++|++.|..+..|..|+++|+++++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   38 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG   38 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC
Confidence            46788999999999999999999999999998875

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.3e-08  Score=62.17  Aligned_cols=35  Identities=20%  Similarity=0.480  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yrj_A            6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP   40 (46)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            35678999999999999999999999999998875

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.4e-08  Score=62.29  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP   40 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC
T ss_pred             CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.07  E-value=3.6e-09  Score=58.62  Aligned_cols=29  Identities=24%  Similarity=0.634  Sum_probs=27.1

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +||.|++|++.|.....|..|+++|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999999999875

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.2e-08  Score=62.71  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yto_A            6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH   40 (46)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB
T ss_pred             ccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC
Confidence            35688999999999999999999999999998875

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=61.88  Aligned_cols=35  Identities=20%  Similarity=0.519  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytr_A            6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP   40 (46)
T ss_dssp             CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC
T ss_pred             CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            46688999999999999999999999999998875

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.4e-08  Score=62.25  Aligned_cols=35  Identities=23%  Similarity=0.533  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep2_A            6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP   40 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS
T ss_pred             CCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            36788999999999999999999999999998875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.63  E-value=6.6e-09  Score=56.80  Aligned_cols=29  Identities=21%  Similarity=0.622  Sum_probs=27.1

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +||.|++|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999998875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.62  E-value=1.5e-08  Score=55.52  Aligned_cols=30  Identities=17%  Similarity=0.549  Sum_probs=27.5

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +||.|++|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            579999999999999999999999998753

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.4e-08  Score=62.27  Aligned_cols=35  Identities=20%  Similarity=0.459  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytj_A            6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP   40 (46)
T ss_dssp             TTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred             CCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC
Confidence            36688999999999999999999999999998875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.2e-08  Score=62.80  Aligned_cols=35  Identities=23%  Similarity=0.548  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoz_A            6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL   40 (46)
T ss_dssp             CCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS
T ss_pred             cCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC
Confidence            35688999999999999999999999999998875

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.3e-08  Score=62.33  Aligned_cols=35  Identities=23%  Similarity=0.517  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ene_A            6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP   40 (46)
T ss_dssp             SCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC
T ss_pred             CCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC
Confidence            35688999999999999999999999999998875

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.3e-08  Score=62.38  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emy_A            6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP   40 (46)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC
T ss_pred             CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC
Confidence            46688999999999999999999999999998875

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.8e-08  Score=61.58  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=32.0

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eov_A            6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH   40 (46)
T ss_dssp             CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS
T ss_pred             CCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC
Confidence            35678999999999999999999999999998875

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.4e-08  Score=62.21  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.++..|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytd_A            6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP   40 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS
T ss_pred             ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC
Confidence            46688999999999999999999999999998875

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.62  E-value=1.7e-08  Score=61.64  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP   40 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCCCCC
Confidence            36688999999999999999999999999998875

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.4e-08  Score=62.03  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emm_A            6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP   40 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT
T ss_pred             CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            46688999999999999999999999999998875

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.7e-08  Score=62.05  Aligned_cols=35  Identities=20%  Similarity=0.517  Sum_probs=31.9

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCC-cCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRR-DRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg-ER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|++ +++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS   41 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTT
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCC
Confidence            35688999999999999999999999999998 765

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.3e-08  Score=62.43  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2yu8_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP   40 (46)
T ss_dssp             CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC
T ss_pred             CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC
Confidence            46688999999999999999999999999998875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.3e-08  Score=62.69  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytm_A            6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP   40 (46)
T ss_dssp             CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            46688999999999999999999999999998875

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.5e-08  Score=61.90  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC   40 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS
T ss_pred             cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC
Confidence            46688999999999999999999999999998875

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.61  E-value=1.4e-08  Score=62.20  Aligned_cols=35  Identities=20%  Similarity=0.488  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP   40 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC
T ss_pred             CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC
Confidence            35678999999999999999999999999998875

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.6e-08  Score=61.78  Aligned_cols=35  Identities=20%  Similarity=0.478  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.....|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP   40 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            35678999999999999999999999999998875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=62.28  Aligned_cols=35  Identities=20%  Similarity=0.551  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em2_A            6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP   40 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC
Confidence            36688999999999999999999999999998875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.1e-08  Score=62.11  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            46688999999999999999999999999998875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=62.04  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytg_A            6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP   40 (46)
T ss_dssp             CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            35678999999999999999999999999998875

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.1e-08  Score=62.49  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   40 (46)
T 2eor_A            6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP   40 (46)
T ss_dssp             SSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC
T ss_pred             CcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence            35678999999999999999999999999998875

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=62.04  Aligned_cols=35  Identities=20%  Similarity=0.488  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.++..|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytk_A            6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP   40 (46)
T ss_dssp             CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred             cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC
Confidence            46688999999999999999999999999998875

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.7e-08  Score=61.91  Aligned_cols=35  Identities=23%  Similarity=0.574  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP   40 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2e-08  Score=61.39  Aligned_cols=35  Identities=20%  Similarity=0.541  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eme_A            6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP   40 (46)
T ss_dssp             TTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC
Confidence            35678999999999999999999999999998875

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.7e-08  Score=62.00  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em5_A            6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP   40 (46)
T ss_dssp             CCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC
T ss_pred             CCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC
Confidence            45678999999999999999999999999998875

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.4e-08  Score=62.19  Aligned_cols=35  Identities=20%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2en6_A            6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP   40 (46)
T ss_dssp             CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.2e-08  Score=62.72  Aligned_cols=35  Identities=26%  Similarity=0.637  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emz_A            6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS   40 (46)
T ss_dssp             CSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.3e-08  Score=62.57  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoo_A            6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS   40 (46)
T ss_dssp             CCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS
T ss_pred             CCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC
Confidence            46788999999999999999999999999998875

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.3e-08  Score=62.37  Aligned_cols=35  Identities=20%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emp_A            6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP   40 (46)
T ss_dssp             CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC
T ss_pred             ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.6e-08  Score=62.02  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP   40 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            35688999999999999999999999999998875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.8e-08  Score=61.77  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN   40 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2e-08  Score=61.49  Aligned_cols=35  Identities=20%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2en1_A            6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP   40 (46)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            46688999999999999999999999999998875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=2.2e-08  Score=62.40  Aligned_cols=35  Identities=20%  Similarity=0.430  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ....+++|.|.+|++.|.+...|..|+++|+++++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP   40 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            46788999999999999999999999999998875

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.2e-08  Score=62.54  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2en3_A            6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP   40 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC
T ss_pred             ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC
Confidence            36688999999999999999999999999998875

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.3e-08  Score=62.32  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=32.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|+|.|.+...|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emh_A            6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP   40 (46)
T ss_dssp             SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            35688999999999999999999999999998875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.59  E-value=1.9e-08  Score=56.71  Aligned_cols=29  Identities=24%  Similarity=0.769  Sum_probs=27.1

Q ss_pred             cccccC--cccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCS--FCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~--~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +||.|+  .|++.|.+...|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  99999999999999999999875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.59  E-value=1.2e-08  Score=60.38  Aligned_cols=33  Identities=18%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHhhhcCCcC
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +.+++||.|.+  |+|.|.+.+.|..|+++|+++|
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56789999995  9999999999999999999875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.5e-08  Score=62.32  Aligned_cols=35  Identities=26%  Similarity=0.491  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP   40 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            46788999999999999999999999999998875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.5e-08  Score=62.27  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|++|++.|.+...|..|+++|+++++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL   40 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC
Confidence            46788999999999999999999999999998875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.1e-08  Score=60.54  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhh-hcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMN-VHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr-~HtgER~   93 (193)
                      .+.+++||+|++|++.|.+...|..|++ +|+++++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~   41 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP   41 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS
T ss_pred             ccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC
Confidence            4678899999999999999999999999 9998875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.57  E-value=2.8e-08  Score=54.99  Aligned_cols=29  Identities=28%  Similarity=0.701  Sum_probs=26.8

Q ss_pred             cccccCcccccccCcchHHHH-hhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGH-MNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~H-mr~HtgER   92 (193)
                      +||.|+.|++.|.+...|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 79999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.57  E-value=1.8e-08  Score=55.33  Aligned_cols=28  Identities=32%  Similarity=0.712  Sum_probs=26.1

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      ++||+|+.|++.|.+...|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4789999999999999999999999974

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.56  E-value=1.9e-08  Score=63.53  Aligned_cols=35  Identities=17%  Similarity=0.477  Sum_probs=29.4

Q ss_pred             CCCCcccccCcccccccCcchHHHHhh-hcCCcCcC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMN-VHRRDRAR   94 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr-~HtgER~~   94 (193)
                      +.+++||.|.+|+|.|.....|..|++ +|+++...
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            567899999999999999999999999 99988653

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.56  E-value=1.6e-08  Score=64.59  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|.|++|++.|.+...|..|+++|+++++
T Consensus        19 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A           19 SQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             HTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             cCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            4578999999999999999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=1.9e-08  Score=55.13  Aligned_cols=27  Identities=26%  Similarity=0.680  Sum_probs=25.4

Q ss_pred             CcccccCcccccccCcchHHHHhhhcC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      ++||.|+.|++.|.+...|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            578999999999999999999999985

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=1.1e-07  Score=66.25  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCcCC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   95 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~~~   95 (193)
                      -...++||+|.+|+|.|.++..|..||++|++++...
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~   43 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQL   43 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcccc
Confidence            3668899999999999999999999999999986544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.54  E-value=3.2e-08  Score=53.66  Aligned_cols=27  Identities=37%  Similarity=0.851  Sum_probs=24.2

Q ss_pred             ccccCcccccccCcchHHHHhhhcCCc
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      ||+|..|++.|.+...|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.53  E-value=1.9e-08  Score=55.54  Aligned_cols=27  Identities=26%  Similarity=0.618  Sum_probs=25.3

Q ss_pred             CcccccCcccccccCcchHHHHhhhcC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      ++||+|+.|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999985

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=2.5e-08  Score=58.63  Aligned_cols=33  Identities=18%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             CCCcccccC--cccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCS--FCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~--~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+++||.|.  .|++.|.+...|..|+++|+++++
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            468999999  599999999999999999998875

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=3.1e-08  Score=58.59  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             CCCCCcccccCcccccccCcchHHHH-hhhcCCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGH-MNVHRRD   91 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~H-mr~HtgE   91 (193)
                      .+.+++||+|+.|++.|.++..|..| +++|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            35678999999999999999999999 9999865

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.47  E-value=6.6e-08  Score=70.37  Aligned_cols=39  Identities=31%  Similarity=0.426  Sum_probs=34.2

Q ss_pred             CCCCCcccccCc--ccccccCcchHHHHh-hhcCCcCcCCCC
Q 041626           59 FSWPPRSYTCSF--CKREFRSAQALGGHM-NVHRRDRARLRI   97 (193)
Q Consensus        59 ~~~~eKpYkC~~--CgKsF~skqaL~~Hm-r~HtgER~~~~~   97 (193)
                      ...++|||+|.+  |+|+|.+.+.|..|+ ++|+++||..-+
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            467899999975  999999999999998 799999987643

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.6e-08  Score=54.11  Aligned_cols=26  Identities=27%  Similarity=0.726  Sum_probs=24.5

Q ss_pred             cccccCcccccccCcchHHHHhhhcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |||+|+.|++.|.+...|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999984

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.38  E-value=7.5e-08  Score=60.14  Aligned_cols=33  Identities=24%  Similarity=0.663  Sum_probs=30.2

Q ss_pred             CCCCcccccC--cccccccCcchHHHHhhhcCCcC
Q 041626           60 SWPPRSYTCS--FCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        60 ~~~eKpYkC~--~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +.+++||+|+  .|+|.|.....|..|+++|+++|
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            6688999996  79999999999999999999875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.8e-07  Score=57.36  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             CCCCCcccccC--cccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCS--FCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~--~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|+|.  .|++.|.....|..|+++|+++++
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   42 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP   42 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            46789999998  899999999999999999998875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.37  E-value=9.4e-08  Score=63.90  Aligned_cols=31  Identities=23%  Similarity=0.658  Sum_probs=15.2

Q ss_pred             CCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++++|+|.+|++.|.+...|..|+++|++++
T Consensus        42 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A           42 GEKPYRCNICGAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHCCSC
T ss_pred             CCCCEECCCCCchhCCHHHHHHHHHhcCCCC
Confidence            3444555555555555555555555554443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.36  E-value=1.9e-07  Score=58.20  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=29.7

Q ss_pred             CCCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           58 GFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        58 ~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      |...++|||+|+.|+|+|.+++.|..||..+..+|
T Consensus         1 ~~~~gekp~~C~~CgK~F~~~s~L~~H~py~C~~r   35 (36)
T 1fv5_A            1 GSLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHR   35 (36)
T ss_dssp             CCSSSCCCCEETTTTEECSCHHHHHHHHHHTSTTC
T ss_pred             CCCCCccCeECCCCCCccCCHhHccCcCCeECcCC
Confidence            45678999999999999999999999996655443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.35  E-value=2.3e-07  Score=61.35  Aligned_cols=32  Identities=31%  Similarity=0.372  Sum_probs=17.2

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .++++|+|.+|++.|.+...|..|+++|++++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~   36 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDR   36 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCC
Confidence            34455555555555555555555555555443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.33  E-value=1.3e-07  Score=59.68  Aligned_cols=32  Identities=31%  Similarity=0.585  Sum_probs=24.0

Q ss_pred             CCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +++||+|++|++.|.+...|..|+++|+++++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   32 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP   32 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC
Confidence            35788888888888888888888888887764

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=2.6e-07  Score=59.05  Aligned_cols=35  Identities=29%  Similarity=0.633  Sum_probs=31.7

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhh-hcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMN-VHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr-~HtgER~   93 (193)
                      ...+++||.|++|++.|.+...|..|++ +|+++++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~   41 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   41 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            4667899999999999999999999997 9998875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.28  E-value=3.4e-07  Score=61.55  Aligned_cols=34  Identities=26%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|.|++|++.|.....|..|+++|+++++
T Consensus        41 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p   74 (77)
T 2cot_A           41 HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP   74 (77)
T ss_dssp             TCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            4455666666666666666666666666665543

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.27  E-value=2.8e-07  Score=60.91  Aligned_cols=36  Identities=19%  Similarity=0.473  Sum_probs=33.0

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCcCC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   95 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~~~   95 (193)
                      +.++++|.|++|++.|.+...|..|+++|+++++.+
T Consensus        32 H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           32 HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             GCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             cCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            667899999999999999999999999999988754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.27  E-value=3.2e-07  Score=57.90  Aligned_cols=33  Identities=24%  Similarity=0.596  Sum_probs=28.4

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +.++++|.|++|++.|.+...|..|+++|++++
T Consensus        24 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           24 HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             TSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            456788999999999999999999999998775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.26  E-value=3.7e-07  Score=65.85  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=31.6

Q ss_pred             CCCCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           57 SGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        57 ~~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+..++.++|.|++|+|.|.++..|..|+++|+++++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~   56 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV   56 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc
Confidence            3456778889999999999999999999999988875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.25  E-value=2.8e-07  Score=50.26  Aligned_cols=27  Identities=30%  Similarity=0.662  Sum_probs=25.2

Q ss_pred             cccccC--cccccccCcchHHHHhhhcCC
Q 041626           64 RSYTCS--FCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        64 KpYkC~--~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            579999  999999999999999999974

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.24  E-value=4.9e-07  Score=60.21  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=28.5

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.++++|.|++|++.|.+...|..|+++|.++++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   42 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP   42 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            46677888888888888888888888888887654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.20  E-value=7.3e-07  Score=59.49  Aligned_cols=35  Identities=26%  Similarity=0.633  Sum_probs=31.8

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ...++++|+|++|++.|.+...|..|+++|+++++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   45 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP   45 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC
Confidence            45678999999999999999999999999998765

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.19  E-value=6.1e-07  Score=57.28  Aligned_cols=30  Identities=27%  Similarity=0.614  Sum_probs=14.5

Q ss_pred             CCCcccccCcccccccCcchHHHHh-hhcCC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHM-NVHRR   90 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hm-r~Htg   90 (193)
                      .++++|.|++|++.|.+...|..|+ ++|.+
T Consensus        26 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A           26 TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             TSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            3444455555555555555555553 34443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=7.1e-07  Score=63.38  Aligned_cols=33  Identities=18%  Similarity=0.463  Sum_probs=26.8

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcCcCC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   95 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~~~   95 (193)
                      +++|.|.+|+|.|.++..|..|+++|+++++..
T Consensus        52 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A           52 QDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             HHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            577888888888888888888888888887643

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=6.2e-07  Score=60.21  Aligned_cols=30  Identities=20%  Similarity=0.333  Sum_probs=16.0

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      .+++||+|.+|++.|.+...|..|+++|++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKHAE   32 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence            344555555555555555555555555543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.09  E-value=1.5e-06  Score=58.29  Aligned_cols=35  Identities=23%  Similarity=0.519  Sum_probs=31.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ...++++|.|++|++.|.+...|..|+++|+++++
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   46 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP   46 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC
Confidence            35578999999999999999999999999998764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.09  E-value=7.5e-07  Score=59.29  Aligned_cols=34  Identities=21%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|+|++|++.|.+...|..|+++|+++.+
T Consensus        37 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           37 HTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             GGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            5578999999999999999999999999987754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.05  E-value=2.7e-06  Score=58.48  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .+.++++|.|.+|++.|.+...|..|+++|.+++
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   35 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK   35 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCCC
Confidence            3455666667777777766666777766666544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.04  E-value=2.9e-06  Score=59.48  Aligned_cols=33  Identities=18%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .++++|.|.+|++.|.+...|..|+++|+++++
T Consensus        69 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  101 (106)
T 2ee8_A           69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS  101 (106)
T ss_dssp             CCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCC
T ss_pred             CCCCCeECCCcCCcccCHHHHHHHHHHhCCCCC
Confidence            344555555555555555555555555555443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.03  E-value=2e-06  Score=54.09  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=27.1

Q ss_pred             ccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ||.|++|++.|.+...|..|+++|+++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~   29 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP   29 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC
Confidence            69999999999999999999999998765

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.02  E-value=1.6e-06  Score=58.76  Aligned_cols=31  Identities=23%  Similarity=0.659  Sum_probs=18.5

Q ss_pred             CCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++++|.|++|++.|.+...|..|+++|++++
T Consensus        59 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           59 GEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            4556666666666666666666666666554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.02  E-value=1.6e-06  Score=64.33  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             CCCcccccCcccccccCcchHHHH-hhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGH-MNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~H-mr~HtgER~   93 (193)
                      .+++||.|.+|+|.|.++..|..| +++|+++++
T Consensus        46 ~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp   79 (102)
T 2ghf_A           46 VLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN   79 (102)
T ss_dssp             CCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            467889999999999999999999 789998876

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.00  E-value=9.2e-07  Score=63.63  Aligned_cols=35  Identities=23%  Similarity=0.562  Sum_probs=32.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.....|..|+++|+++++
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp   53 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ   53 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC
Confidence            46788999999999999999999999999998875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=2.2e-06  Score=58.95  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=22.2

Q ss_pred             cccCcccccccCcchHHHHhhhcCCcCc
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      |.|++|++.|.+...|..||++|+++++
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             cCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            7888888888888888888888877764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=4.3e-06  Score=56.06  Aligned_cols=35  Identities=17%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             CCcccccCcccccccCcchHHHHh-hhcCCcCcCCC
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHM-NVHRRDRARLR   96 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hm-r~HtgER~~~~   96 (193)
                      ++++|.|.+|++.|.+...|..|+ +.|.++++...
T Consensus        35 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A           35 AALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             TTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            478999999999999999999999 67877776543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.97  E-value=1.6e-06  Score=57.75  Aligned_cols=34  Identities=26%  Similarity=0.581  Sum_probs=29.2

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|.|++  |++.|.+...|..|+++|+++++
T Consensus        33 H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   68 (79)
T 2dlk_A           33 HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD   68 (79)
T ss_dssp             GGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             hCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC
Confidence            45678899998  99999999999999999988765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.97  E-value=2.9e-06  Score=58.32  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=17.9

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .++++|.|++|++.|.+...|..|+++|++++
T Consensus        60 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           60 SDERPFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CCCCCccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            34455555555555555555555555555543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.96  E-value=1.5e-06  Score=56.41  Aligned_cols=34  Identities=21%  Similarity=0.460  Sum_probs=25.6

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhh-c-CCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNV-H-RRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~-H-tgER~   93 (193)
                      +.+++||.|+.|++.|.+...|..|+++ | .++++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~   40 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV   40 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC
Confidence            3467888888888888888888888887 6 34443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=2.6e-06  Score=56.07  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=24.7

Q ss_pred             CCCcccccC-cccccccCcchHHHHhhhcCCcC
Q 041626           61 WPPRSYTCS-FCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        61 ~~eKpYkC~-~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .+++||+|+ .|++.|..+..|..|+++|...+
T Consensus        32 ~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A           32 CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            567788888 88888888888888888876554

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=97.96  E-value=1.2e-06  Score=66.91  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=23.6

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ..++++|.|++|++.|.+...|..||++|+++++
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~   50 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK   50 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC
Confidence            4466777777777777777777777777766654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.95  E-value=1.9e-06  Score=59.18  Aligned_cols=31  Identities=23%  Similarity=0.674  Sum_probs=23.9

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ++||.|++|++.|.+...|..|+++|+++++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   31 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP   31 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            4678888888888888888888888876654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.95  E-value=3e-06  Score=61.02  Aligned_cols=34  Identities=21%  Similarity=0.591  Sum_probs=30.4

Q ss_pred             CCCCCcccccCcccccccCcchHHHHh-hhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHM-NVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hm-r~HtgER   92 (193)
                      .+.+++||.|++|+|.|.++..|..|+ ++|.+|.
T Consensus        50 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           50 LLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             TTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             hccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            467899999999999999999999996 6898764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.94  E-value=2.6e-06  Score=53.57  Aligned_cols=31  Identities=23%  Similarity=0.525  Sum_probs=27.6

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      +.+++||.|++|++.|.+...|..|+++|++
T Consensus        27 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           27 HTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             HHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             cCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            4567899999999999999999999999864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.93  E-value=4.1e-06  Score=59.29  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CCCCcccccCcccccccCcchHHHHhh-hcCCcCcCC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMN-VHRRDRARL   95 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr-~HtgER~~~   95 (193)
                      +.++++|+|.+|++.|.+...|..|++ +|+++++-.
T Consensus        64 H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred             cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCC
Confidence            678899999999999999999999997 898887654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.92  E-value=7e-06  Score=55.12  Aligned_cols=33  Identities=18%  Similarity=0.438  Sum_probs=27.6

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcCcCC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   95 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~~~   95 (193)
                      +++|.|.+|++.|.+...|..|+++|+++++..
T Consensus        45 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A           45 PAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             CcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            478899999999999999999999888877643

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.91  E-value=4.9e-06  Score=57.03  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=17.5

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .++++|.|.+|++.|.+...|..|+++|.+++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   34 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEK   34 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCC
Confidence            34455555555555555555555555555443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=97.91  E-value=4.2e-06  Score=53.29  Aligned_cols=30  Identities=30%  Similarity=0.731  Sum_probs=28.0

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +||.|++|++.|.+...|..|+++|+++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   30 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP   30 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999998765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.90  E-value=6.6e-06  Score=54.32  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             CCCCCcccccCc--ccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .....++|.|..  |++.|.....|..|+++|+++++
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   47 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP   47 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC
Confidence            466778999998  99999999999999999998875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.89  E-value=3.4e-06  Score=55.70  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=23.8

Q ss_pred             CCCCCCcccccC--cccccccCcchHHHHhhhcCCcCc
Q 041626           58 GFSWPPRSYTCS--FCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        58 ~~~~~eKpYkC~--~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ....++++|.|+  .|++.|.+...|..|+++|.++++
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~   49 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP   49 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            345566667775  477777777777777777776654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.89  E-value=3.8e-06  Score=54.45  Aligned_cols=30  Identities=23%  Similarity=0.670  Sum_probs=27.8

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      .++++|.|++|++.|.+...|..|+++|++
T Consensus        36 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           36 RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             SSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            478999999999999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.88  E-value=5.4e-06  Score=59.67  Aligned_cols=29  Identities=21%  Similarity=0.405  Sum_probs=16.2

Q ss_pred             CcccccCcccccc-cCcchHHHHhhhcCCcC
Q 041626           63 PRSYTCSFCKREF-RSAQALGGHMNVHRRDR   92 (193)
Q Consensus        63 eKpYkC~~CgKsF-~skqaL~~Hmr~HtgER   92 (193)
                      +++|.|++|++.| .+...|..|+++| +++
T Consensus        32 ~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k   61 (96)
T 2ctd_A           32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQE   61 (96)
T ss_dssp             TSCEECTTTCSCEESSHHHHHHHHHHH-CCC
T ss_pred             CCCcCCCCCCCCcccCHHHHHHHHHHH-CCC
Confidence            4455555555555 5555555555555 443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=1.2e-06  Score=57.04  Aligned_cols=31  Identities=13%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +++|.|++|++.|.+...|..|+++|+++++
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            7899999999999999999999999998875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=2.5e-06  Score=60.47  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             CCCCCcccccCccccccc-CcchHHHHhhhcCC-cCc
Q 041626           59 FSWPPRSYTCSFCKREFR-SAQALGGHMNVHRR-DRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~-skqaL~~Hmr~Htg-ER~   93 (193)
                      .+.++++|.|.+|++.|. +...|..|+++|++ +++
T Consensus        18 ~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~   54 (98)
T 2gqj_A           18 AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA   54 (98)
T ss_dssp             TTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH
T ss_pred             HhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC
Confidence            467789999999999999 99999999999987 654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.85  E-value=4.8e-06  Score=57.41  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=21.8

Q ss_pred             CCCCcccccC--cccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCS--FCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~--~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|.|+  .|++.|.+...|..|+++|+++++
T Consensus        40 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   75 (100)
T 2ebt_A           40 HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP   75 (100)
T ss_dssp             HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS
T ss_pred             hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3445667774  477777777777777777766553

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=97.85  E-value=3.9e-06  Score=64.03  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=26.4

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.+++||+|++|++.|.+...|..|+++|+++++
T Consensus        45 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   78 (133)
T 2lt7_A           45 HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR   78 (133)
T ss_dssp             HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC
T ss_pred             cCCCCCeeCCccCeecccccchhhhccccCCCcc
Confidence            4567788888888888888888888888877764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.85  E-value=7.1e-06  Score=54.98  Aligned_cols=33  Identities=18%  Similarity=0.441  Sum_probs=25.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhh-hcCCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMN-VHRRD   91 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr-~HtgE   91 (193)
                      .+.+++||.|++|++.|.+...|..|++ .|.++
T Consensus         9 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~   42 (77)
T 2ct1_A            9 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN   42 (77)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCC
Confidence            3567788888888888888888888886 56543

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.84  E-value=6.6e-06  Score=54.30  Aligned_cols=30  Identities=23%  Similarity=0.610  Sum_probs=27.6

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      +.++++|.|++|++.|.+...|..|+++|+
T Consensus        44 h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           44 HTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             HHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            457789999999999999999999999985

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=97.84  E-value=4.7e-06  Score=55.34  Aligned_cols=32  Identities=22%  Similarity=0.693  Sum_probs=19.6

Q ss_pred             CCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ++++|.|+.|++.|.+...|..|+++|+++++
T Consensus        26 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   57 (82)
T 2kmk_A           26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP   57 (82)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHHHHTCCC
T ss_pred             CCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC
Confidence            34556666666666666666666666666543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.79  E-value=6.8e-06  Score=59.15  Aligned_cols=30  Identities=27%  Similarity=0.527  Sum_probs=28.0

Q ss_pred             CCcccccCcccccccCcchHHHH-hhhcCCc
Q 041626           62 PPRSYTCSFCKREFRSAQALGGH-MNVHRRD   91 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~H-mr~HtgE   91 (193)
                      ++++|.|.+|+|.|.++..|..| |++|+++
T Consensus        59 ~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           59 KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            78999999999999999999999 9999854

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=97.75  E-value=1.2e-05  Score=56.24  Aligned_cols=32  Identities=31%  Similarity=0.759  Sum_probs=20.2

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .++++|.|.+|++.|.+...|..|+++|++++
T Consensus        41 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   72 (106)
T 2ee8_A           41 TDERPYTCDICHKAFRRQDHLRDHRYIHSKEK   72 (106)
T ss_dssp             CCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCC
T ss_pred             CCCCCcCCCCccchhCCHHHHHHHHHHhCCCC
Confidence            34556666666666666666666666666554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=2.4e-05  Score=55.67  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++|.....
T Consensus        74 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           74 KEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             SCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             ccCCCcceECCCCCCccCCHHHHHHHHHHhCCccc
Confidence            36678999999999999999999999999875543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.73  E-value=8.1e-06  Score=62.95  Aligned_cols=32  Identities=22%  Similarity=0.570  Sum_probs=21.3

Q ss_pred             CCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ++++|.|++|++.|.+...|..|+++|+++++
T Consensus       130 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  161 (190)
T 2i13_A          130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKP  161 (190)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            45667777777777777777777766666553

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.72  E-value=1.5e-05  Score=56.52  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=26.9

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .++++|+|++|++.|.+...|..|+++|.++++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   35 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP   35 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCC
Confidence            467788888888888888888888888887654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=97.70  E-value=1e-05  Score=53.69  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=22.7

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      .++++|.|++|++.|.+...|..|+++|++
T Consensus        53 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           53 TGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             cCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            456778888888888888888888888764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.68  E-value=1.5e-05  Score=59.32  Aligned_cols=33  Identities=21%  Similarity=0.551  Sum_probs=20.8

Q ss_pred             CCCcccccCc--ccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSF--CKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .++++|.|.+  |++.|.+...|..|+++|+++++
T Consensus        86 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  120 (155)
T 2rpc_A           86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP  120 (155)
T ss_dssp             HCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCS
T ss_pred             CCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            3456666666  66666666666666666665543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.68  E-value=1.9e-05  Score=52.98  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=30.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .+.++++|.|.+|++.|.+...|..|+++|..+.
T Consensus         9 ~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~   42 (86)
T 1x6h_A            9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   42 (86)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             eecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc
Confidence            4678899999999999999999999999877653

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.68  E-value=1.1e-05  Score=54.61  Aligned_cols=33  Identities=21%  Similarity=0.605  Sum_probs=26.4

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .++++|.|++|++.|.+...|..|+++|+++++
T Consensus        30 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   62 (90)
T 1a1h_A           30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP   62 (90)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            356778888888888888888888888877654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.66  E-value=1.8e-05  Score=56.19  Aligned_cols=34  Identities=29%  Similarity=0.551  Sum_probs=26.2

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ...+++|.|++|++.|.+...|..|+++|+++++
T Consensus        61 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (124)
T 2dlq_A           61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP   94 (124)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCS
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            3456778888888888888888888888877654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.65  E-value=2.1e-05  Score=55.54  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +.++++|.| .|++.|.+...|..|+++|.+++
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~   36 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLR   36 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCC
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCc
Confidence            456666777 67777777777777777766554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.64  E-value=1.3e-05  Score=56.74  Aligned_cols=33  Identities=21%  Similarity=0.560  Sum_probs=22.8

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .++++|.|++|++.|.+...|..|+++|+++++
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP   94 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCC
Confidence            345667777777777777777777777766543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.64  E-value=1.8e-05  Score=53.40  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=24.0

Q ss_pred             CCCCcccccC--cccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCS--FCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~--~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|.|+  .|++.|.+...|..|+++|+++++
T Consensus        30 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   65 (89)
T 2wbs_A           30 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP   65 (89)
T ss_dssp             SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            4556677775  477777777777777777777654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=97.62  E-value=2.1e-05  Score=57.13  Aligned_cols=32  Identities=22%  Similarity=0.475  Sum_probs=26.2

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.+++||.|++|++.|.+...|..|+++|  +++
T Consensus        69 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~  100 (129)
T 2wbt_A           69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT  100 (129)
T ss_dssp             HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCC
T ss_pred             hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCC
Confidence            44578899999999999999999999888  554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.62  E-value=2.2e-05  Score=58.16  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=28.4

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhh-hcCC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMN-VHRR   90 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr-~Htg   90 (193)
                      ...+++||.|++|++.|.++..|..|++ +|++
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~   44 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN   44 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSS
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCC
Confidence            3568899999999999999999999997 5954

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.61  E-value=2.5e-05  Score=55.16  Aligned_cols=31  Identities=32%  Similarity=0.728  Sum_probs=18.9

Q ss_pred             CCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++++|.|++|++.|.+...|..|+++|.+++
T Consensus        34 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   64 (110)
T 2csh_A           34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK   64 (110)
T ss_dssp             CCCSEECTTTSCEESSSHHHHHHHTTTCCCC
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            4455666666666666666666666665544

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.60  E-value=1.7e-05  Score=52.07  Aligned_cols=32  Identities=22%  Similarity=0.423  Sum_probs=28.5

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .-+++||+|++|++.|. ...|..|+++ +++++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p   36 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP   36 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcC
Confidence            45789999999999999 9999999998 77765

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.59  E-value=2.5e-05  Score=53.42  Aligned_cols=32  Identities=19%  Similarity=0.502  Sum_probs=27.2

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      +.++++|.|++|++.|.+...|..|+++|+++
T Consensus        30 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A           30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             SCSSCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            45678899999999999999999999988865

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.58  E-value=2.9e-05  Score=55.19  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=30.3

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhh--cCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNV--HRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~--HtgER~   93 (193)
                      .+.+++||.|++|++.|.+...|..|+++  |.++++
T Consensus        13 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~   49 (115)
T 2dmi_A           13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN   49 (115)
T ss_dssp             CCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSC
T ss_pred             eeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCC
Confidence            46788999999999999999999999998  655543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.55  E-value=2.9e-05  Score=55.60  Aligned_cols=34  Identities=26%  Similarity=0.636  Sum_probs=25.7

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +.++++|.|.+  |++.|.+...|..|+++|+++++
T Consensus        57 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   92 (124)
T 1ubd_C           57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP   92 (124)
T ss_dssp             TSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC
T ss_pred             cCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc
Confidence            45667788865  88888888888888888877654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.54  E-value=3.1e-05  Score=51.81  Aligned_cols=28  Identities=18%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      +++|+|++|++.|.+...|..|+++|..
T Consensus        43 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           43 VAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            4899999999999999999999997553

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.53  E-value=3.8e-05  Score=50.96  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=29.7

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHhh-hcCCcCc
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHMN-VHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hmr-~HtgER~   93 (193)
                      ++++++|.|..  |++.|.+...|..|++ +|.++++
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~   38 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS   38 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC
Confidence            45678999987  9999999999999999 7987764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.48  E-value=4.4e-05  Score=54.61  Aligned_cols=32  Identities=28%  Similarity=0.555  Sum_probs=28.5

Q ss_pred             CCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ++++|.|++|++.|.+...|..|+++|.++++
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   62 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP   62 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            67889999999999999999999999987654

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.47  E-value=2.8e-05  Score=51.25  Aligned_cols=29  Identities=28%  Similarity=0.704  Sum_probs=26.4

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHhhhc
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHMNVH   88 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hmr~H   88 (193)
                      +.+++||+|.+  |++.|.....|..|+++|
T Consensus        42 H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           42 HTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             HSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            56789999975  999999999999999987

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=97.45  E-value=2.8e-05  Score=56.51  Aligned_cols=30  Identities=23%  Similarity=0.426  Sum_probs=28.0

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++||.|++|++.|.+...|..|+++|++.-
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            789999999999999999999999998763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.41  E-value=5.5e-05  Score=53.40  Aligned_cols=31  Identities=19%  Similarity=0.589  Sum_probs=18.8

Q ss_pred             CCcccccCc--ccccccCcchHHHHhhhcCCcC
Q 041626           62 PPRSYTCSF--CKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        62 ~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++++|.|.+  |++.|.+...|..|+++|.+++
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   35 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEK   35 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTC
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCC
Confidence            455666665  6666666666666666665443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.37  E-value=4.5e-05  Score=58.72  Aligned_cols=33  Identities=21%  Similarity=0.519  Sum_probs=26.1

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .++++|.|++|++.|.+...|..|+++|+++++
T Consensus       101 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  133 (190)
T 2i13_A          101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP  133 (190)
T ss_dssp             HTCCCEECTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            356778888888888888888888888887764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.35  E-value=3.7e-05  Score=50.51  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+.+++||.|+.|++.|....+|.   ++|+++++
T Consensus         8 ~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~   39 (62)
T 1vd4_A            8 DSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGT   39 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHH---HEETTTTE
T ss_pred             HcCCCCCccCCCCCchhccHHHhH---hhcCCCCC
Confidence            367889999999999999988886   88998875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.34  E-value=5.9e-05  Score=51.61  Aligned_cols=31  Identities=16%  Similarity=0.487  Sum_probs=28.1

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      +.+++||.|++|++.|.+...|..|+++|++
T Consensus        26 H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C           26 HTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             HHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            4567899999999999999999999999874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.34  E-value=4.7e-05  Score=50.55  Aligned_cols=30  Identities=27%  Similarity=0.534  Sum_probs=21.4

Q ss_pred             CCCcccccCc--ccccccCcchHHHHhhhcCC
Q 041626           61 WPPRSYTCSF--CKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        61 ~~eKpYkC~~--CgKsF~skqaL~~Hmr~Htg   90 (193)
                      .++++|+|++  |++.|.+...|..|+++|++
T Consensus        27 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A           27 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             HTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            3456777766  77777777777777777765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.31  E-value=9.9e-05  Score=52.05  Aligned_cols=29  Identities=21%  Similarity=0.438  Sum_probs=24.8

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~H   88 (193)
                      +.++++|.|.+|++.|.+...|..|+++|
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   39 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLC   39 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHC
Confidence            55778888988998888888888888888

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.27  E-value=6.5e-05  Score=49.86  Aligned_cols=29  Identities=24%  Similarity=0.511  Sum_probs=25.7

Q ss_pred             cccc--CcccccccCcchHHHHhhhcCCcCc
Q 041626           65 SYTC--SFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        65 pYkC--~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ||.|  +.|++.|.+...|..|+++|.++++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   31 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP   31 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            6889  8899999999999999999998765

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.24  E-value=0.00011  Score=49.44  Aligned_cols=32  Identities=19%  Similarity=0.615  Sum_probs=28.1

Q ss_pred             CCcccccCc--ccccccCcchHHHHhhhcCCcCc
Q 041626           62 PPRSYTCSF--CKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        62 ~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .+++|.|++  |++.|.+...|..|+++|.++++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   35 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP   35 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC
Confidence            357899999  99999999999999999987654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.17  E-value=0.00014  Score=54.01  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             cccCcccccccCcchHHHHhhhcCCcCc
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      |.|++|++.|.+...|..|+++|+++++
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~   90 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKP   90 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCS
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCc
Confidence            6777777777777777777777766654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.15  E-value=0.00019  Score=53.04  Aligned_cols=31  Identities=19%  Similarity=0.656  Sum_probs=19.1

Q ss_pred             CCcccccCc--ccccccCcchHHHHhhhcCCcC
Q 041626           62 PPRSYTCSF--CKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        62 ~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++++|.|++  |++.|.+...|..|+++|++++
T Consensus        64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   96 (155)
T 2gli_A           64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK   96 (155)
T ss_dssp             CCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCC
T ss_pred             CCCCccCCCCCCCCcccCHHHHHHHHHHcCCCC
Confidence            445666654  6666666666666666666554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.15  E-value=0.00021  Score=49.02  Aligned_cols=34  Identities=18%  Similarity=0.480  Sum_probs=29.8

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHhhhcCCcCc
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ....++|.|.+  |++.|.+...|..|+++|.++++
T Consensus        10 ~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   45 (100)
T 2ebt_A           10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP   45 (100)
T ss_dssp             CCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC
T ss_pred             cccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC
Confidence            44667899997  99999999999999999987764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.12  E-value=0.00018  Score=53.17  Aligned_cols=34  Identities=21%  Similarity=0.537  Sum_probs=30.0

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHh-hhcCCcCc
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHM-NVHRRDRA   93 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hm-r~HtgER~   93 (193)
                      +.++++|.|++  |++.|.+...|..|+ ++|.++++
T Consensus        92 h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A           92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             TTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             cCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            56788999998  999999999999998 89988765

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=97.02  E-value=0.00024  Score=54.56  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=23.9

Q ss_pred             CCCccccc--CcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTC--SFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC--~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      .++++|.|  +.|++.|.+...|..|+++|+++++
T Consensus       100 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~  134 (190)
T 1tf6_A          100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP  134 (190)
T ss_dssp             TTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCS
T ss_pred             CCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCC
Confidence            35667777  7777777777777777777776654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.99  E-value=0.0003  Score=54.04  Aligned_cols=29  Identities=21%  Similarity=0.511  Sum_probs=18.7

Q ss_pred             CCCCcccccC--cccccccCcchHHHHh-hhc
Q 041626           60 SWPPRSYTCS--FCKREFRSAQALGGHM-NVH   88 (193)
Q Consensus        60 ~~~eKpYkC~--~CgKsF~skqaL~~Hm-r~H   88 (193)
                      +.++++|.|+  .|++.|.+...|..|+ +.|
T Consensus        67 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h   98 (190)
T 1tf6_A           67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH   98 (190)
T ss_dssp             TTTCCCEECCSSSCCCEESCHHHHHHHHHTTS
T ss_pred             ccCCCceeCCCCCCCCccCCHHHHHHHHHHhc
Confidence            4455666666  6666666666666666 455

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.88  E-value=0.0005  Score=46.97  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=26.6

Q ss_pred             ccccCcccccccCcchHHHHhhh-cCCcCcC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNV-HRRDRAR   94 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~-HtgER~~   94 (193)
                      .|.|+.|++.|.+...|..|+++ |.++++.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   55 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ   55 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCC
Confidence            47899999999999999999998 8877653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.46  E-value=0.00067  Score=53.27  Aligned_cols=32  Identities=19%  Similarity=0.139  Sum_probs=28.0

Q ss_pred             CCCCCCcccccCcccccccCcchHHHHhhhcC
Q 041626           58 GFSWPPRSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        58 ~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      -...+++||.|..|+|.|.+..+|..|+++..
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            34678899999999999999999999998643

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.25  E-value=0.00086  Score=46.16  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=18.2

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      -+++||.|+.|++.|. ...|..|+++|.+++.
T Consensus        39 c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A           39 CGARTELCGNCGRNVL-VKDLKTHPEVCGREGS   70 (75)
T ss_dssp             HHHCEEECSSSCCEEE-TTGGGTHHHHBTTBSS
T ss_pred             cCCCceEcccCCCcCc-HHHHHHHHHHccCCcC
Confidence            3455566666666555 3556666666655543

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.81  E-value=0.0019  Score=44.47  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ...+++||.|.+|++.|. ...|..|+ .|.++++
T Consensus        11 ~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~   43 (75)
T 2d9k_A           11 TECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART   43 (75)
T ss_dssp             CCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE
T ss_pred             ccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc
Confidence            366889999999999995 89999999 8988876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.29  E-value=0.0078  Score=37.74  Aligned_cols=20  Identities=15%  Similarity=0.104  Sum_probs=17.3

Q ss_pred             CCCCCcccccCcccccccCc
Q 041626           59 FSWPPRSYTCSFCKREFRSA   78 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~sk   78 (193)
                      .+.+++||+|++|++.|.+.
T Consensus        35 ~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A           35 VHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             TSCCCCCCCSSSSCCSSCCC
T ss_pred             hcCCCCCccCCCCCCCCCCC
Confidence            46788999999999999863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=94.94  E-value=0.003  Score=41.14  Aligned_cols=26  Identities=19%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             CCCCCcccccCcccccccCcchHHHH
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGH   84 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~H   84 (193)
                      .+.+++||.|++|++.|.....+..|
T Consensus        33 ~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A           33 FDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             EETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             hcCCCCCEECCCCCCccccCcccccc
Confidence            46788999999999999988876654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.36  E-value=0.01  Score=37.94  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=22.4

Q ss_pred             CCCCCcccccCcccccccCcchHHH
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGG   83 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~   83 (193)
                      .+.+++||.|++|++.|.+...|..
T Consensus        12 ~h~~~~~~~C~~C~k~f~~~~~l~~   36 (73)
T 2ctu_A           12 IHLGDRSQKCSKCGIIFIRRSTLSR   36 (73)
T ss_dssp             CCCCCSEEECSSSCCEEECCCCCCC
T ss_pred             HhCCCCCeeCCcccchhCCHHHhCc
Confidence            4678899999999999999998877

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.25  E-value=0.027  Score=38.10  Aligned_cols=29  Identities=31%  Similarity=0.543  Sum_probs=24.7

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      -+|.|+.|++.|+-..+|.+||+--.++.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcch
Confidence            46899999999999999999999554443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.55  E-value=0.16  Score=30.52  Aligned_cols=15  Identities=7%  Similarity=0.000  Sum_probs=13.1

Q ss_pred             CCCCCcccccCcccc
Q 041626           59 FSWPPRSYTCSFCKR   73 (193)
Q Consensus        59 ~~~~eKpYkC~~CgK   73 (193)
                      .+.+++||.|++|+|
T Consensus        34 ~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           34 SHSGEKPYSSGPSSG   48 (48)
T ss_dssp             GSCSCCCCCSCCCCC
T ss_pred             hcCCCCCccCCCCCC
Confidence            467899999999987

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.07  E-value=0.59  Score=29.70  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=26.1

Q ss_pred             CCCCCCcccccCcccccccCcchHHHHhhhc
Q 041626           58 GFSWPPRSYTCSFCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        58 ~~~~~eKpYkC~~CgKsF~skqaL~~Hmr~H   88 (193)
                      |..++...+.|..|+-+|..-..+..|++--
T Consensus         1 ~~~~~~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            1 GSAAEVMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCCCCCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CCCCccCcCeeccccceehhhHHHhhhheec
Confidence            3456677899999999999999999998743

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=82.88  E-value=0.51  Score=29.38  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=21.3

Q ss_pred             cccCcccccccCcchHHHHh-hhcC
Q 041626           66 YTCSFCKREFRSAQALGGHM-NVHR   89 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hm-r~Ht   89 (193)
                      |.|++|-+.|.+...|..|- ..|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            89999999999999999996 4564

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=81.75  E-value=0.26  Score=30.43  Aligned_cols=22  Identities=0%  Similarity=0.033  Sum_probs=19.7

Q ss_pred             cccccCcchHHHHhhhcCCcCc
Q 041626           72 KREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        72 gKsF~skqaL~~Hmr~HtgER~   93 (193)
                      +|.|.....|..|+++|+++++
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~   24 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQP   24 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCC
Confidence            5789999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	5e-19
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	0.002

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.0 bits (182), Expect = 5e-19
 Identities = 36/37 (97%), Positives = 37/37 (100%)

Query: 61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRI 97
          WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR+
Sbjct: 1  WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL 37

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 66  YTCSFCKREFRSAQALGGHMN--VHRRDRARLRISPPTPKD 104
           + C  C R F  +  L  H     H++   +L + P + ++
Sbjct: 16  HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEE 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.1
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	99.07
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.07
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.05
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.04
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.0
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.0
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.92
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.82
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.79
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.79
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.79
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.76
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.75
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.68
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.55
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.55
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.46
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.43
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.31
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.29
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.15
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.88
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.87
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.64
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.47
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.44
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.3
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.23
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.15
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.72
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.51
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.27
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.25
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.1
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.98
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.89
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.7
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.11
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.83
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.45
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.44
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.09
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.09
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.54
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	91.95
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	91.23
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.95
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.18
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	86.5
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.63
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	84.07
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	82.08
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	80.18

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.10  E-value=1.1e-11  Score=74.04  Aligned_cols=29  Identities=31%  Similarity=0.753  Sum_probs=28.1

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      |||+|++|+|+|+.++.|..||++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999986

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=2.2e-11  Score=76.99  Aligned_cols=36  Identities=100%  Similarity=1.728  Sum_probs=33.4

Q ss_pred             CCCcccccCcccccccCcchHHHHhhhcCCcCcCCC
Q 041626           61 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   96 (193)
Q Consensus        61 ~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~~~~   96 (193)
                      |+.+.|+|.+|+|.|.+.|||++||+.|..+|.+++
T Consensus         1 ~p~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~~~k   36 (37)
T d1njqa_           1 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   36 (37)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCccCCCCCCCccCCcccccchHhhhcchHHHhc
Confidence            788999999999999999999999999999887764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2e-11  Score=74.99  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=30.7

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCc
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      ++++|||+|.+|+|+|..++.|..|+++|++|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            67999999999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.8e-11  Score=72.40  Aligned_cols=29  Identities=21%  Similarity=0.694  Sum_probs=28.0

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      |||.|++|+|+|..++.|..|+++|++||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4e-11  Score=75.02  Aligned_cols=33  Identities=24%  Similarity=0.520  Sum_probs=31.4

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      .+.++|||+|++|||+|...+.|..|+++|+||
T Consensus         6 ~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           6 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            478999999999999999999999999999987

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=6.2e-11  Score=73.63  Aligned_cols=33  Identities=24%  Similarity=0.507  Sum_probs=30.6

Q ss_pred             CCCCcccccCcccccccCcchHHHHhhhcCCcC
Q 041626           60 SWPPRSYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        60 ~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      ++++|||+|++|+|.|+++..|..||++|+.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            578999999999999999999999999998653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=2.9e-11  Score=71.91  Aligned_cols=28  Identities=25%  Similarity=0.705  Sum_probs=27.0

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      ||||+|++|+|.|..+..|..||++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.8e-10  Score=71.34  Aligned_cols=33  Identities=27%  Similarity=0.497  Sum_probs=30.9

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      .++++|||+|++|+|+|..++.|..||++|+.+
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            468999999999999999999999999999865

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.2e-10  Score=71.76  Aligned_cols=32  Identities=31%  Similarity=0.751  Sum_probs=29.9

Q ss_pred             CCcccccCcccccccCcchHHHHhh-hcCCcCc
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMN-VHRRDRA   93 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr-~HtgER~   93 (193)
                      -+|||+|.+|||.|+++.+|..||+ +|++|||
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp   34 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   34 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcC
Confidence            4799999999999999999999985 7999997

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3e-10  Score=66.66  Aligned_cols=26  Identities=27%  Similarity=0.655  Sum_probs=25.1

Q ss_pred             cccccCcccccccCcchHHHHhhhcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |||+|++|||+|..++.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999995

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=8.6e-10  Score=66.62  Aligned_cols=29  Identities=24%  Similarity=0.769  Sum_probs=27.2

Q ss_pred             cccccC--cccccccCcchHHHHhhhcCCcC
Q 041626           64 RSYTCS--FCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        64 KpYkC~--~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      |||.|+  .|+|.|+++++|..||++|++||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689996  69999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=1.1e-09  Score=68.00  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      .++++|||+|++|+|+|.+++.|..|+++|..
T Consensus         5 ~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             ccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            47899999999999999999999999999974

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=8.6e-10  Score=66.35  Aligned_cols=28  Identities=21%  Similarity=0.719  Sum_probs=26.9

Q ss_pred             cccccCc--ccccccCcchHHHHhhhcCCc
Q 041626           64 RSYTCSF--CKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        64 KpYkC~~--CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      |||.|++  |+|+|.++++|..|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            7999999  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=6.3e-10  Score=66.86  Aligned_cols=28  Identities=29%  Similarity=0.781  Sum_probs=26.7

Q ss_pred             cccccCc--ccccccCcchHHHHhhhcCCc
Q 041626           64 RSYTCSF--CKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        64 KpYkC~~--CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      |||.|++  |+|+|+++++|..|||+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            7999988  999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=8.7e-10  Score=71.99  Aligned_cols=33  Identities=27%  Similarity=0.786  Sum_probs=31.4

Q ss_pred             CCCCcccccCc--ccccccCcchHHHHhhhcCCcC
Q 041626           60 SWPPRSYTCSF--CKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        60 ~~~eKpYkC~~--CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +.+++||+|.+  |+|.|+.+++|..||++|++||
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            67899999987  9999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.9e-09  Score=65.92  Aligned_cols=32  Identities=19%  Similarity=0.434  Sum_probs=28.0

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhh-cCC
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNV-HRR   90 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~-Htg   90 (193)
                      .++++|||+|++|+|.|+++..|..|++. |+.
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            46899999999999999999999999854 543

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=9e-09  Score=66.68  Aligned_cols=30  Identities=27%  Similarity=0.584  Sum_probs=26.1

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      ||||+|+ |||.|..+++|..|+++|+++++
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekp   30 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP   30 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCS
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccC
Confidence            6889995 99999999999999999998876

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1.6e-08  Score=61.48  Aligned_cols=29  Identities=28%  Similarity=0.655  Sum_probs=27.0

Q ss_pred             CcccccCc--ccccccCcchHHHHhhhcCCc
Q 041626           63 PRSYTCSF--CKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        63 eKpYkC~~--CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      ||||.|++  |+|.|++...|..|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999998  999999999999999999853

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=1.1e-08  Score=61.06  Aligned_cols=27  Identities=33%  Similarity=0.844  Sum_probs=25.6

Q ss_pred             cccccCc--ccccccCcchHHHHhhhcCC
Q 041626           64 RSYTCSF--CKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        64 KpYkC~~--CgKsF~skqaL~~Hmr~Htg   90 (193)
                      |||.|++  |+|+|.+..+|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            7999988  99999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.9e-08  Score=57.54  Aligned_cols=26  Identities=27%  Similarity=0.566  Sum_probs=24.8

Q ss_pred             ccccCcccccccCcchHHHHhhhcCC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      |++|++|+|.|+++..|..|||.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.2e-08  Score=58.63  Aligned_cols=26  Identities=35%  Similarity=0.892  Sum_probs=24.8

Q ss_pred             cccccCc--ccccccCcchHHHHhhhcC
Q 041626           64 RSYTCSF--CKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        64 KpYkC~~--CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |||.|++  |+|+|.+..+|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999988  9999999999999999996

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.6e-08  Score=60.16  Aligned_cols=28  Identities=29%  Similarity=0.686  Sum_probs=26.6

Q ss_pred             cccCc--ccccccCcchHHHHhhhcCCcCc
Q 041626           66 YTCSF--CKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        66 YkC~~--CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      |.|++  |+|.|.++..|..||++|+++||
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp   31 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD   31 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC
Confidence            78987  99999999999999999999997

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8.1e-08  Score=62.02  Aligned_cols=30  Identities=33%  Similarity=0.785  Sum_probs=28.2

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~H   88 (193)
                      .+.+++||.|++|++.|.....|..||++|
T Consensus        24 ~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          24 MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             HHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             ccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            467899999999999999999999999998

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=3.4e-07  Score=54.12  Aligned_cols=27  Identities=22%  Similarity=0.674  Sum_probs=25.9

Q ss_pred             CcccccCcccccccCcchHHHHhhhcC
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      ||||.|.+||+.|..+....+|+++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999996

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.1e-06  Score=50.62  Aligned_cols=29  Identities=28%  Similarity=0.606  Sum_probs=27.4

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCc
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      ++||+|++|...-+.++.|..|.|.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            68999999999999999999999999974

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.4e-06  Score=50.12  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=25.8

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCc
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      |.+.|..|||+|..++.|.+|+.+|++|
T Consensus         1 r~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           1 RVHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             CcchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            3578999999999999999999999986

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.5e-06  Score=51.64  Aligned_cols=30  Identities=23%  Similarity=0.554  Sum_probs=28.3

Q ss_pred             cccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      |...|..|||.|+.-..|.+|+..|.+|||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            567899999999999999999999999997

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.2e-06  Score=49.88  Aligned_cols=29  Identities=21%  Similarity=0.612  Sum_probs=27.2

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCc
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      +|||+|++|...|..+.-|.-|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999999764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.64  E-value=1e-05  Score=46.31  Aligned_cols=24  Identities=42%  Similarity=0.938  Sum_probs=23.0

Q ss_pred             cccCcccccccCcchHHHHhhhcC
Q 041626           66 YTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |+|..|.++|..+++|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999995

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.4e-05  Score=45.96  Aligned_cols=28  Identities=25%  Similarity=0.497  Sum_probs=26.3

Q ss_pred             ccccCcccccccCcchHHHHhhhcCCcC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      .|.|++|+......+-|..|.|.|+++|
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3889999999999999999999999986

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=2.4e-05  Score=45.31  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=24.9

Q ss_pred             ccCcccccccCcchHHHHhhhcCCcC
Q 041626           67 TCSFCKREFRSAQALGGHMNVHRRDR   92 (193)
Q Consensus        67 kC~~CgKsF~skqaL~~Hmr~HtgER   92 (193)
                      +|+.|.|.|.++..|..|-|.|+|||
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999986

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=3.6e-05  Score=44.94  Aligned_cols=26  Identities=23%  Similarity=0.666  Sum_probs=25.0

Q ss_pred             cccccCcccccccCcchHHHHhhhcC
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999996

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=5.7e-05  Score=45.28  Aligned_cols=28  Identities=25%  Similarity=0.685  Sum_probs=25.3

Q ss_pred             cccccCc--ccccccCcchHHHHh-hhcCCc
Q 041626           64 RSYTCSF--CKREFRSAQALGGHM-NVHRRD   91 (193)
Q Consensus        64 KpYkC~~--CgKsF~skqaL~~Hm-r~HtgE   91 (193)
                      |||.|++  |.|+|+.+++-..|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6999988  999999999999998 899754

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=6.7e-05  Score=44.44  Aligned_cols=27  Identities=19%  Similarity=0.668  Sum_probs=24.2

Q ss_pred             cccccCc--ccccccCcchHHHHhhhcCC
Q 041626           64 RSYTCSF--CKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        64 KpYkC~~--CgKsF~skqaL~~Hmr~Htg   90 (193)
                      |||.|.+  |+|+++..+.|+.|++.|+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899987  99999999999999997654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00043  Score=40.83  Aligned_cols=28  Identities=21%  Similarity=0.704  Sum_probs=24.5

Q ss_pred             cccccCcccccccCcchHHHHhhh-cCCc
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNV-HRRD   91 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~-HtgE   91 (193)
                      |||+|.+|.......++|..|.++ |..|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            689999999999999999999875 5544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00048  Score=40.53  Aligned_cols=29  Identities=34%  Similarity=0.665  Sum_probs=26.9

Q ss_pred             CcccccCcccccccCcchHHHHhhhcCCc
Q 041626           63 PRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        63 eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      +..|.|..|...|+.+-.|..||-.|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45689999999999999999999999986

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00076  Score=39.54  Aligned_cols=23  Identities=30%  Similarity=0.821  Sum_probs=21.8

Q ss_pred             ccccCcccccccCcchHHHHhhh
Q 041626           65 SYTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      ||.|..|.-+|.++..|..||..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999975

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.25  E-value=0.00067  Score=39.94  Aligned_cols=28  Identities=25%  Similarity=0.578  Sum_probs=25.3

Q ss_pred             cccccC--cccccccCcchHHHHhhhcCCc
Q 041626           64 RSYTCS--FCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        64 KpYkC~--~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      |||.|.  -|.|.|.+-..|.+|-.+|++|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            578886  5999999999999999999986

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.10  E-value=0.0009  Score=39.92  Aligned_cols=26  Identities=31%  Similarity=0.736  Sum_probs=22.9

Q ss_pred             ccccCcccccccCcchHHHHh-hhcCC
Q 041626           65 SYTCSFCKREFRSAQALGGHM-NVHRR   90 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hm-r~Htg   90 (193)
                      ||.|.+|++.|+.+.-|-+|+ +.|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            799999999999999999997 45654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0014  Score=38.05  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             ccccCcccccccCcchHHHHhhhcCC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      |-+|+.|..+.+++.+|..|.|+|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            45899999999999999999999974

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0014  Score=41.71  Aligned_cols=25  Identities=20%  Similarity=0.604  Sum_probs=22.9

Q ss_pred             CCcccccCcccccccCcchHHHHhh
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMN   86 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr   86 (193)
                      +-|||.|..|+|.|-.+..+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5689999999999999999999964

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.70  E-value=0.0017  Score=38.00  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=23.1

Q ss_pred             cccccC--cccccccCcchHHHHhhhc
Q 041626           64 RSYTCS--FCKREFRSAQALGGHMNVH   88 (193)
Q Consensus        64 KpYkC~--~CgKsF~skqaL~~Hmr~H   88 (193)
                      .||+|+  -|+|.|...+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589996  6999999999999999998

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.11  E-value=0.003  Score=35.88  Aligned_cols=22  Identities=32%  Similarity=0.936  Sum_probs=20.5

Q ss_pred             cccCcccccccCcchHHHHhhh
Q 041626           66 YTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        66 YkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      |.|++|-|.|+++..+..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999865

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0043  Score=40.59  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             ccccCcccccccCcchHHHHhhhcCC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      -|.|..|+|.|+....|+.|...|--
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            48899999999999999999999864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0053  Score=37.01  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             cCcccccccCcchHHHHhhhcCCc
Q 041626           68 CSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        68 C~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      |+.=++.|..+..|..|||+|++|
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            555567899999999999999986

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0054  Score=35.84  Aligned_cols=24  Identities=25%  Similarity=0.729  Sum_probs=22.0

Q ss_pred             cccccCcccccccCcchHHHHhhh
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      |||+|.+|.---.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            689999999999999999999864

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.0091  Score=36.97  Aligned_cols=28  Identities=21%  Similarity=0.525  Sum_probs=25.5

Q ss_pred             CCccccc--CcccccccCcchHHHHhhhcC
Q 041626           62 PPRSYTC--SFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        62 ~eKpYkC--~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      .+|||.|  +-|+..|.+-..|..|+..|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4899999  689999999999999998884

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.09  E-value=0.0076  Score=34.09  Aligned_cols=22  Identities=36%  Similarity=0.776  Sum_probs=20.9

Q ss_pred             ccccCcccccccCcchHHHHhh
Q 041626           65 SYTCSFCKREFRSAQALGGHMN   86 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr   86 (193)
                      ||+|.-|...|-++..|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999985

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.54  E-value=0.026  Score=32.44  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             ccccCcccccccCcchHHHHhhh
Q 041626           65 SYTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      ||+|..|||.+-.+..|-.|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            79999999999999999999753

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.024  Score=32.64  Aligned_cols=23  Identities=22%  Similarity=0.595  Sum_probs=21.2

Q ss_pred             ccccCcccccccCcchHHHHhhh
Q 041626           65 SYTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      .|+|+.|+-...++++|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999974

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.034  Score=33.77  Aligned_cols=26  Identities=19%  Similarity=0.534  Sum_probs=22.1

Q ss_pred             ccccCcccccccCcchHHHHhhhcCC
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRR   90 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~Htg   90 (193)
                      .|.|..|+|.|+++..+.+|.-.-++
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            58999999999999999999765443

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.95  E-value=0.096  Score=31.46  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             CCcccccCcccccccCcchHHHHhhh
Q 041626           62 PPRSYTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        62 ~eKpYkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      ++..|.|.-||-.|++.+.|..|+.-
T Consensus         5 kparf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cccceeccccceeecChhHHHhhhhe
Confidence            44568999999999999999999863

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.18  E-value=0.079  Score=30.46  Aligned_cols=20  Identities=30%  Similarity=0.622  Sum_probs=18.4

Q ss_pred             cccccccCcchHHHHhhhcC
Q 041626           70 FCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        70 ~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      -|.|.|+..+++..|+-+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            69999999999999998883

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.50  E-value=0.1  Score=35.34  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             cccccCcccccccCcchHHHHhhh
Q 041626           64 RSYTCSFCKREFRSAQALGGHMNV   87 (193)
Q Consensus        64 KpYkC~~CgKsF~skqaL~~Hmr~   87 (193)
                      -.|-|-.|+|.|.+..+|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            458999999999999999999964

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.63  E-value=0.12  Score=30.25  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=24.5

Q ss_pred             cccccC--cccccccCcchHHHHhhhcCCc
Q 041626           64 RSYTCS--FCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        64 KpYkC~--~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      |.|-|+  .|+..|...-.|..|...|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            457775  6999999999999999999986

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=84.07  E-value=0.13  Score=29.29  Aligned_cols=24  Identities=29%  Similarity=0.630  Sum_probs=20.9

Q ss_pred             ccc--CcccccccCcchHHHHhhhcC
Q 041626           66 YTC--SFCKREFRSAQALGGHMNVHR   89 (193)
Q Consensus        66 YkC--~~CgKsF~skqaL~~Hmr~Ht   89 (193)
                      |.|  +-|+|.|.....|..|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            566  469999999999999998886

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.33  Score=33.26  Aligned_cols=33  Identities=24%  Similarity=0.630  Sum_probs=27.7

Q ss_pred             CCCCCcccccCcccccccCcchHHHHhhhcCCc
Q 041626           59 FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRD   91 (193)
Q Consensus        59 ~~~~eKpYkC~~CgKsF~skqaL~~Hmr~HtgE   91 (193)
                      ......-|+|..|.-.|-+-..|..|...|..|
T Consensus        12 ~~~~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          12 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             cccCCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            334445699999999999999999999999754

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=80.18  E-value=0.24  Score=39.71  Aligned_cols=27  Identities=22%  Similarity=0.541  Sum_probs=23.0

Q ss_pred             ccccCcccccccCcchHHHHhhhcCCcCc
Q 041626           65 SYTCSFCKREFRSAQALGGHMNVHRRDRA   93 (193)
Q Consensus        65 pYkC~~CgKsF~skqaL~~Hmr~HtgER~   93 (193)
                      -|+|..|+| +..-.+|..||+.|. ++.
T Consensus       146 FYKCe~CgK-YvDie~~~~H~k~HG-~~~  172 (218)
T d2czra1         146 FYKCEECGK-YVDIENLEAHLREHG-IKL  172 (218)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTT-CCG
T ss_pred             EeehhhcCc-eecHHHHHHHHHHcC-cch
Confidence            489999999 888999999999984 443