Citrus Sinensis ID: 041805

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSSIEQLWDGMKVCET
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHcccccEEEccccEEEccHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccEEEEEEccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHcEEEEEcccccEEHHHHHHHHcHHHHEcccccccccEEcccHHHHHHHHHHccccccccEEEEEEEEcccccHHHHHHcccEEEcc
Coil and Loop (DISEMBL)
MEALEYHLALERFSRhafkqnhpdvgyeeLSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYdgldnkekniFLDVACFFQGEDVNLVMKFLNasgfypklgrsvlVDKSLIVKSNNNKITMHDLLQELGRDIvskesnnpgncsllwhhEDIYEVLTynmslpsnisakklvflempnssiEQLWdgmkvcet
Flexible Loop (DISEMBL)
MEALEYHLALerfsrhafkqNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSsieqlwdgMKVCET
Low Complexity Region (SEG)
MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSSIEQLWDGMKVCET
Disordered region (IsUnstruct)
*****YHLALERFSRHAF******VGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSK***NPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSSIEQLWDG******
Disordered Region (DISOPRED)
MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSSIEQLWDGMKVCE*
Disordered Region (DISEMBL)
MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSSIEQLWDGMKVCET
Disordered Region (DISPRO)
*EALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSSIEQLWDGMKVC**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPNSSIEQLWDGMKVCET
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.837	0.157	0.381	5e-32
Q9FL92	1372	Probable WRKY transcripti	no	no	0.781	0.122	0.405	1e-27
O82500	1095	Putative disease resistan	no	no	0.804	0.157	0.394	1e-26
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.781	0.129	0.385	2e-25
Q9FH83	1288	Probable WRKY transcripti	no	no	0.762	0.127	0.397	4e-25
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.818	0.109	0.364	6e-23
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.781	0.088	0.357	1e-17
Q9LVT1	623	Putative disease resistan	no	no	0.493	0.170	0.309	2e-06
Q9FKZ1	809	Probable disease resistan	no	no	0.372	0.098	0.313	6e-06
Q8RXS5	888	Probable disease resistan	no	no	0.609	0.147	0.270	1e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 119/181 (65%), Gaps = 1/181 (0%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           + AL  H +++ F +HAF +  P+  +E+LS + + YA+G+PLALKV G  L+      W
Sbjct: 345 VTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEW 404

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           +SAI  ++   +  I++ LKISYDGL+ K++ +FLD+ACF +GE+ + +++ L +     
Sbjct: 405 KSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGA 464

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTY 180
           + G  +L+DKSL+  S  N++ MHDL+Q++G+ IV+ +  +PG  S LW  +++ EV++ 
Sbjct: 465 EYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQ-KDPGERSRLWLAKEVEEVMSN 523

Query: 181 N 181
           N
Sbjct: 524 N 524

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEV- 59
           ++ L    AL+ FS  A   +  +    E+S K +KYA G PLAL + G  L  +++   
Sbjct: 293 VQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPE 352

Query: 60  WESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFY 119
            E A  KL+       ++ +K SYD L+++EKNIFLD+ACFFQGE+V+ VM+ L   GF+
Sbjct: 353 MEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFF 412

Query: 120 PKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLW 169
           P +G  VLV+KSL+  S  N++ MH+L+Q++GR I+++E+      S LW
Sbjct: 413 PHVGIDVLVEKSLVTIS-ENRVRMHNLIQDVGRQIINRETRQTKRRSRLW 461

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 2/175 (1%)

Query: 9   ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
           AL  F +HAFKQ+ P    + L+ +    A  +PLAL+VLG F+  + KE WE ++  L+
Sbjct: 349 ALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLK 408

Query: 69  RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASG-FYPKLGRSVL 127
             L   + +VLK+ YDGL + EK++FL +AC F G+  N + + + A+   Y   G  VL
Sbjct: 409 SRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVL 468

Query: 128 VDKSLIVKSNNNKITMHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVLTYN 181
            DKSLI K  N +I MH LL++LG+++V K+S   PG    L + ++   VL+ N
Sbjct: 469 ADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNN 523

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 104/174 (59%), Gaps = 6/174 (3%)

Query: 7   HLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINK 66
           HLAL    R AF ++ P   ++EL+ +  K A  +PL L VLG  L  R KE W   + +
Sbjct: 343 HLALTMLCRSAFGKDSPPDDFKELAFEVAKLAGNLPLGLSVLGSSLKGRTKEWWMEMMPR 402

Query: 67  LQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSV 126
           L+  L+  I++ L++SYD L  K++++FL +AC F G +V+ V   L  +     +G ++
Sbjct: 403 LRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVKDLLKDN-----VGFTM 457

Query: 127 LVDKSLIVKSNNNKITMHDLLQELGRDI-VSKESNNPGNCSLLWHHEDIYEVLT 179
           L +KSLI  + +  I MH+LL++LGR+I  +K   NPG    L + EDI+EV+T
Sbjct: 458 LTEKSLIRITPDGYIEMHNLLEKLGREIDRAKSKGNPGKRRFLTNFEDIHEVVT 511

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 17  AFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREK-EVWESAINKLQRILHPSI 75
           + K++  +   +ELS + + YA G PLA+ V G  L  ++K    E+A  KL+R     I
Sbjct: 316 SIKEDMGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKI 375

Query: 76  LEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVK 135
           ++  K +YD L + EKNIFLD+ACFFQGE+VN V++ L   GF+P +   VLVDK L+  
Sbjct: 376 VDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTI 435

Query: 136 SNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYN 181
           S  N++ +H L Q++GR+I++ E+        LW    I  +L YN
Sbjct: 436 S-ENRVWLHKLTQDIGREIINGETVQIERRRRLWEPWSIKYLLEYN 480

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           ++ L  H AL+ FS+  F  N P+    +LS K + Y  G PLAL + G  L  ++ E+ 
Sbjct: 323 VQGLNVHEALQLFSQSVFGINEPEQNDRKLSMKVIDYVNGNPLALSIYGRELMGKKSEM- 381

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           E+A  +L+      I +VLK +Y  L + EKNI LD+A FF+GE VN VM+ L  S ++P
Sbjct: 382 ETAFFELKHCPPLKIQDVLKNAYSALSDNEKNIVLDIAFFFKGETVNYVMQLLEESHYFP 441

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTY 180
           +L   VLVDK ++  S N  + M++L+Q+  ++I + E      C+ +W    I  +L Y
Sbjct: 442 RLAIDVLVDKCVLTISENT-VQMNNLIQDTCQEIFNGEIE---TCTRMWEPSRIRYLLEY 497

Query: 181 N 181
           +
Sbjct: 498 D 498

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 11/179 (6%)

Query: 23   PDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKIS 82
            P+V Y+ LS + +K++ G P  L+ L     +RE       +     I  P I E    S
Sbjct: 994  PEV-YKTLSLELVKFSNGNPQVLQFLSSI--DREWNKLSQEVKTTSPIYIPGIFEK---S 1047

Query: 83   YDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKIT 142
              GLD+ E+ IFLD+ACFF   D + V   L+  GF   +G   LVDKSL+  S +N + 
Sbjct: 1048 CCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVD 1107

Query: 143  MHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVLTYNMSLPSNISAKKLVFLEMPN 200
            M   +Q  GR+IV +ES + PG+ S LW+ + I  V   +    +  SA + +FL+M N
Sbjct: 1108 MLSFIQATGREIVRQESADRPGDRSRLWNADYIRHVFIND----TGTSAIEGIFLDMLN 1162

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEE-LSSKAMKYAQGVPLALKVLGCFLYEREKEV 59
           +E L  H A   F   AF Q     G+ + L  + +  ++G+PL+LKVLG  L +R +  
Sbjct: 127 VELLNEHDATSLFCLSAFNQKSVPSGFSKSLVKQVVGESKGLPLSLKVLGASLNDRPETY 186

Query: 60  WESAINKLQRI-----LHPS-ILEVLKISYDGLDNKEKNIFLDVACFFQGEDV 106
           W  A+ +L R       H S +   ++ + + LD K K  FLD+  F +G+ +
Sbjct: 187 WAIAVERLSRGEPVDETHESKVFAQIEATLENLDPKTKECFLDMGAFPEGKKI 239

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 27  YEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAI---NKLQRIL---HPSILEVLK 80
           YE+L  K +K   G P+ ++V+G  L  R    W+  +   ++ ++IL   +P++LE L+
Sbjct: 343 YEDLLQKILKRCNGFPIVIEVVGVSLKGRSLNTWKGQVESWSEGEKILGKPYPTVLECLQ 402

Query: 81  ISYDGLDNKEKNIFLDVACFFQGEDV 106
            S+D LD   K  FLD+  F + + +
Sbjct: 403 PSFDALDPNLKECFLDMGSFLEDQKI 428

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 28/159 (17%)

Query: 21  NHPDVGYEELSSKAMKYAQGVPLALKVLG-CFLYEREKEVWESAINKLQRI------LHP 73
           +HP++    ++    K  +G+PLAL V+G    Y+R  + W SAI+ L         +  
Sbjct: 331 SHPEI--PTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMED 388

Query: 74  SILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNL----VMKFLNASGF----------- 118
            IL +LK SYD L +++  +       F  ED N+    ++ +    GF           
Sbjct: 389 EILPILKYSYDNLKSEQLKLCFQYCALFP-EDHNIEKNDLVDYWIGEGFIDRNKGKAENQ 447

Query: 119 -YPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVS 156
            Y  +G  +LV   L+++ N   + MHD+++E+   I S
Sbjct: 448 GYEIIG--ILVRSCLLMEENQETVKMHDVVREMALWIAS 484

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
359496026	1250	PREDICTED: TMV resistance protein N-like	0.790	0.136	0.533	6e-45
357515077	1266	NBS-LRR resistance-like protein 4G [Medi	0.846	0.143	0.480	4e-44
357471111	1264	NBS-LRR resistance-like protein 4G [Medi	0.846	0.143	0.480	4e-44
356524185	882	PREDICTED: TMV resistance protein N-like	0.804	0.196	0.497	6e-44
255561520	465	conserved hypothetical protein [Ricinus	0.860	0.397	0.502	7e-44
255537139	1137	leucine-rich repeat-containing protein,	0.841	0.159	0.510	8e-44
357499823	1437	NBS-containing resistance-like protein [	0.911	0.136	0.482	3e-43
297734814	872	unnamed protein product [Vitis vinifera]	0.841	0.207	0.489	4e-43
359493572	2338	PREDICTED: uncharacterized protein LOC10	0.841	0.077	0.489	6e-43
359496034	1132	PREDICTED: TMV resistance protein N-like	0.948	0.180	0.414	1e-42

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 129/180 (71%), Gaps = 10/180 (5%)

Query: 9   ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
           A+  FSRHAF+++HP   Y ELS+ A+ YA+G+PLALKVLG FL+ + K  W+S ++KLQ
Sbjct: 357 AVALFSRHAFEEDHPTEDYMELSNYAVSYAKGLPLALKVLGSFLFSKSKLEWKSQLDKLQ 416

Query: 69  RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLV 128
              H  I  VL++S+DGLD+ E++IFLDVACFF+GED + V+K L++ GFYP +G  VL+
Sbjct: 417 INPHMDIESVLRVSFDGLDDTEQDIFLDVACFFKGEDKDYVIKILDSCGFYPSIGIRVLI 476

Query: 129 DKSLIVKSNNNKITMHDLLQELGRDIVSKESN---------NPGNCSLLWHHEDIYEVLT 179
           DKSLI    +NK+ MHDLLQE+G DIV K S+         +PG  S LW  ED+Y+VLT
Sbjct: 477 DKSLITVV-HNKLWMHDLLQEMGWDIVRKTSHKNPSKRRRLDPGKHSRLWLQEDVYDVLT 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515077|ref|XP_003627827.1| NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|355521849|gb|AET02303.1| NBS-LRR resistance-like protein 4G [Medicago truncatula]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 127/183 (69%), Gaps = 1/183 (0%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           ++ L +H +L+ FS  AFK+  PD+GY++LS   + YA G+PLALKVLG     + KE+W
Sbjct: 346 VKPLNFHESLQLFSLSAFKKVCPDIGYQQLSESVVNYAGGIPLALKVLGSLFSYKSKEIW 405

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           +S + KL++I    I  +L++SYDGLD+ EK IFLD+ACF  G+D   V + L+A GFY 
Sbjct: 406 QSTMTKLKKIPCREIQNILRLSYDGLDDTEKEIFLDIACFLNGKDRQHVTRLLDACGFYA 465

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESN-NPGNCSLLWHHEDIYEVLT 179
             G   L++K+LI  SNNN++ MH L+QE+GR+IV +ES  +PG  S L+ HE++Y+VL 
Sbjct: 466 VPGLETLLEKALITFSNNNQVQMHALIQEMGREIVRQESTKDPGRRSRLYDHEEVYDVLK 525

Query: 180 YNM 182
            NM
Sbjct: 526 NNM 528

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471111|ref|XP_003605840.1| NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|355506895|gb|AES88037.1| NBS-LRR resistance-like protein 4G [Medicago truncatula]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 127/183 (69%), Gaps = 1/183 (0%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           ++ L +H +L+ FS  AFK+  PD+GY++LS   + YA G+PLALKVLG     + KE+W
Sbjct: 346 VKPLNFHESLQLFSLSAFKKVCPDIGYQQLSESVVNYAGGIPLALKVLGSLFSYKSKEIW 405

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           +S + KL++I    I  +L++SYDGLD+ EK IFLD+ACF  G+D   V + L+A GFY 
Sbjct: 406 QSTMTKLKKIPCREIQNILRLSYDGLDDTEKEIFLDIACFLNGKDRQHVTRLLDACGFYA 465

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESN-NPGNCSLLWHHEDIYEVLT 179
             G   L++K+LI  SNNN++ MH L+QE+GR+IV +ES  +PG  S L+ HE++Y+VL 
Sbjct: 466 VPGLETLLEKALITFSNNNQVQMHALIQEMGREIVRQESTKDPGRRSRLYDHEEVYDVLK 525

Query: 180 YNM 182
            NM
Sbjct: 526 NNM 528

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524185|ref|XP_003530712.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 122/173 (70%)

Query: 9   ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
           +L+ F   AF +  P+ GY +LS   + Y +G+PLALKVLG  L  R KE+WE  + KLQ
Sbjct: 346 SLQLFCLTAFGEKQPNDGYADLSRMVVSYCKGIPLALKVLGASLRSRSKEIWECELRKLQ 405

Query: 69  RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLV 128
           +I +  I +VLK+SYDGLD  E++IFLD+ACFF+G D   V + L A  F+P  G ++L+
Sbjct: 406 KIPNKEIHKVLKLSYDGLDRSEQDIFLDIACFFKGRDRCWVTRVLEAFEFFPAPGINILL 465

Query: 129 DKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYN 181
           DK+LI  S++N I MHDL+QE+GR+IV +ES +PG  + LW HE++++VL YN
Sbjct: 466 DKALITISDSNLILMHDLIQEMGREIVHQESKDPGRRTRLWRHEEVHDVLKYN 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561520|ref|XP_002521770.1| conserved hypothetical protein [Ricinus communis] gi|223538983|gb|EEF40580.1| conserved hypothetical protein [Ricinus communis]

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 129/187 (68%), Gaps = 2/187 (1%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           ++ L  + AL+ FS + F QNHP   + +LS + + YA+G PLALKVLGCFL ++ K+ W
Sbjct: 155 VDGLNLNEALQLFSINCFNQNHPLEEFMQLSKRVIYYAKGNPLALKVLGCFLLDKSKQDW 214

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           E A++KL+R  +  +  VL++SYDGL+ ++K IFLD+ACFF+GEDV  V + L+  GFY 
Sbjct: 215 EIALDKLKRTSNIGMKNVLRLSYDGLEIEDKEIFLDIACFFKGEDVCFVERILDGCGFYV 274

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNN-PGNCSLLWHHEDIYEVLT 179
            +G + LVDKSLI  S N K+ MHDL+QE+G + V +ES   PG  S LWHHEDIY VLT
Sbjct: 275 DIGLNNLVDKSLITVS-NGKLWMHDLIQEMGWETVQQESTGEPGERSRLWHHEDIYHVLT 333

Query: 180 YNMSLPS 186
            N    +
Sbjct: 334 KNTGTKA 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           ++ L +H AL+ F++  FK+      Y  LS   ++YA+GVPLALKVLG FL+ + K  W
Sbjct: 340 VKELVHHEALQLFNQTTFKKKCVPEDYSYLSDLVIEYAKGVPLALKVLGSFLFGKSKTEW 399

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           ESA++KL++  H +   VLKISYDGLD +EKNIFLD+ACFF+GE V +V K L+  GF  
Sbjct: 400 ESALDKLKKAPHRATQNVLKISYDGLDAEEKNIFLDIACFFRGESVEMVTKILDGCGFST 459

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTY 180
           K+G  +LVDKSLI    N+K+ MHDLLQE+G++IV +ES  P   + LW+HEDI  V + 
Sbjct: 460 KIGLCLLVDKSLITIL-NDKVEMHDLLQEMGKEIVLQESKQPSQRTRLWNHEDILHVFSR 518

Query: 181 NM 182
           N+
Sbjct: 519 NL 520

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499823|ref|XP_003620200.1| NBS-containing resistance-like protein [Medicago truncatula] gi|355495215|gb|AES76418.1| NBS-containing resistance-like protein [Medicago truncatula]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 131/201 (65%), Gaps = 5/201 (2%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           ++ L  H +LE FS +AF++N PD  Y E+    ++YA+G PLAL V+G  L+ +  E W
Sbjct: 378 VKELNDHESLELFSMNAFRKNVPDASYGEIVKCVVQYAKGHPLALNVIGSDLFGKTVEEW 437

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           +SA+NK + I +  IL VLK+SYD LD+ EK IFLD+ACFF+G     V K L+AS FY 
Sbjct: 438 KSALNKYETIPNKEILNVLKVSYDNLDDNEKEIFLDIACFFKGYPKADVEKTLDASRFYS 497

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESN-NPGNCSLLWHHEDIYEVLT 179
           K G  VLVDKSL+  S +N + MHDL+++LG+DI  KES  +P     LWHHED+ EVLT
Sbjct: 498 KYGIGVLVDKSLVTISESNSVKMHDLIEDLGKDIARKESPFDPSKRRRLWHHEDVLEVLT 557

Query: 180 YNMSLPSNISAKKLVFLEMPN 200
            NM         + + L+MPN
Sbjct: 558 ENMG----TDTIEGIVLDMPN 574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734814|emb|CBI17048.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 126/182 (69%), Gaps = 1/182 (0%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           +E L +H AL+ F R+AFKQ+HP  GY +LS + ++YA G+PLALKVLG  L+ +    W
Sbjct: 246 VEKLYFHEALQLFCRYAFKQHHPKEGYGDLSHQVVQYADGLPLALKVLGSLLFGKRLPDW 305

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           +S + KL+++ +  I++VLKIS+DGLD  ++ IFLD+ACFF+G+DV  V + L+AS F  
Sbjct: 306 KSELQKLEKVPNMEIVKVLKISFDGLDYTQRMIFLDIACFFRGDDVKRVSRILDASEFNA 365

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVLT 179
           + G + LVD+  I  S +N+I MHDLL ++G+ IV +E  N PG  S LW H DIY VL 
Sbjct: 366 ESGINALVDRCFITISKDNRIDMHDLLAQMGKGIVDQECPNEPGERSRLWRHIDIYRVLK 425

Query: 180 YN 181
            N
Sbjct: 426 RN 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493572|ref|XP_002270741.2| PREDICTED: uncharacterized protein LOC100261885 [Vitis vinifera]

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 126/182 (69%), Gaps = 1/182 (0%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           +E L +H AL+ F R+AFKQ+HP  GY +LS + ++YA G+PLALKVLG  L+ +    W
Sbjct: 347 VEKLYFHEALQLFCRYAFKQHHPKEGYGDLSHQVVQYADGLPLALKVLGSLLFGKRLPDW 406

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYP 120
           +S + KL+++ +  I++VLKIS+DGLD  ++ IFLD+ACFF+G+DV  V + L+AS F  
Sbjct: 407 KSELQKLEKVPNMEIVKVLKISFDGLDYTQRMIFLDIACFFRGDDVKRVSRILDASEFNA 466

Query: 121 KLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVLT 179
           + G + LVD+  I  S +N+I MHDLL ++G+ IV +E  N PG  S LW H DIY VL 
Sbjct: 467 ESGINALVDRCFITISKDNRIDMHDLLAQMGKGIVDQECPNEPGERSRLWRHIDIYRVLK 526

Query: 180 YN 181
            N
Sbjct: 527 RN 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/258 (41%), Positives = 140/258 (54%), Gaps = 54/258 (20%)

Query: 9   ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
           A+E   R+A KQ      + ELS+  + YAQG+PL LKVLG FL+   K  W S ++KL+
Sbjct: 345 AIEFLGRYASKQQIVIDEFMELSNSIITYAQGLPLVLKVLGSFLFSMSKHEWRSELDKLK 404

Query: 69  RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLV 128
              H  I EVL+ISYDGLD+KEKNIFLD+ACFF+GED + V+K L+  GF+   G   L+
Sbjct: 405 DTPHGRIQEVLRISYDGLDDKEKNIFLDIACFFKGEDKDHVIKILDGCGFFAVCGIRGLI 464

Query: 129 DKSLIVKSNNNKITMHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVLT-------- 179
           DKSLI  SNN+KI MHDLLQE+GR I+ + S   PG  S LW ++D Y VL+        
Sbjct: 465 DKSLITISNNDKIVMHDLLQEMGRKIIRQTSPKEPGKRSRLWIYKDAYHVLSKNTGTQEV 524

Query: 180 ----YNMS-----------------------------------------LPSNISAKKLV 194
               +N+S                                         LP + S K LV
Sbjct: 525 EGIFFNLSDIEEIHFTTKAFAGMDKLRLLKFYDYSPSTNSECTSKRKCKLPHDFSPKNLV 584

Query: 195 FLEMPNSSIEQLWDGMKV 212
            L +  S ++QLW G+KV
Sbjct: 585 DLSLSCSDVKQLWKGIKV 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.795	0.132	0.454	4.7e-39
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.827	0.155	0.385	1.8e-34
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.804	0.154	0.44	5.8e-33
TAIR|locus:2174900	968	AT5G40060 [Arabidopsis thalian	0.883	0.196	0.388	3.6e-31
TAIR|locus:2155347	1372	TTR1 "TOLERANT TO TOBACCO RING	0.781	0.122	0.405	4.7e-30
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.8	0.152	0.428	5.6e-30
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.786	0.141	0.421	6e-30
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.790	0.139	0.410	1.1e-29
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.786	0.142	0.383	3.5e-29
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.804	0.157	0.394	5.5e-29

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 4.7e-39, Sum P(2) = 4.7e-39
 Identities = 80/176 (45%), Positives = 122/176 (69%)

Query:     9 ALERFSRHAFKQNH--PDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINK 66
             AL+ F  +AF++    P  G+EELS +A+ YA G+PLAL+VLG FLY R +  WES + +
Sbjct:   348 ALQLFCNYAFREEIILPH-GFEELSVQAVNYASGLPLALRVLGSFLYRRSQIEWESTLAR 406

Query:    67 LQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSV 126
             L+   H  I+EVL++SYDGLD +EK IFL ++CF+  + V+ V K L+  G+  ++G ++
Sbjct:   407 LKTYPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKQVDYVRKLLDLCGYAAEIGITI 466

Query:   127 LVDKSLIVKSNNNKITMHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVLTYN 181
             L +KSLIV+SN   + +HDLL+++GR++V +++ NNP    LLW  EDI  +L+ N
Sbjct:   467 LTEKSLIVESNGC-VKIHDLLEQMGRELVRQQAVNNPAQRLLLWDPEDICHLLSEN 521

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 359 (131.4 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 69/179 (38%), Positives = 118/179 (65%)

Query:     3 ALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWES 62
             AL  H +++ F +HAF +  P+  +E+LS + + YA+G+PLALKV G  L+      W+S
Sbjct:   347 ALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKS 406

Query:    63 AINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKL 122
             AI  ++   +  I++ LKISYDGL+ K++ +FLD+ACF +GE+ + +++ L +     + 
Sbjct:   407 AIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEY 466

Query:   123 GRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYN 181
             G  +L+DKSL+  S  N++ MHDL+Q++G+ IV+ + + PG  S LW  +++ EV++ N
Sbjct:   467 GLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQKD-PGERSRLWLAKEVEEVMSNN 524

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 5.8e-33, Sum P(2) = 5.8e-33
 Identities = 77/175 (44%), Positives = 104/175 (59%)

Query:     8 LALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKL 67
             LALE F R+AF++N P  G+ ELSS+    A  +PL LKVLG +L  R+ E W   + +L
Sbjct:   352 LALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIEDWMDMMPRL 411

Query:    68 QRILHPSILEVLKISYDGLDNK-EKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSV 126
             Q  L   I + L++SYDGL+NK ++ IF  +AC F GE VN +   L  S     +G   
Sbjct:   412 QNDLDGKIEKTLRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIGLKN 471

Query:   127 LVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYN 181
             LVDKSLI    +  I MH LLQ++G++IV  +SN PG    L   + IY+VL  N
Sbjct:   472 LVDKSLIFVREDT-IEMHRLLQDMGKEIVRAQSNEPGEREFLVDSKHIYDVLEDN 525

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174900 AT5G40060 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
 Identities = 77/198 (38%), Positives = 112/198 (56%)

Query:     8 LALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKL 67
             LALE   R+AF+QN P  G+++L+ + +++A  +PL L VLG +L  R K  W   + +L
Sbjct:   160 LALEMLCRYAFRQNTPPDGFKKLAVEVVRHAGILPLGLNVLGSYLRGRNKRYWMDMLPRL 219

Query:    68 QRILHPSILEVLKISYDGLDNK-EKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSV 126
             ++ L   I + L++ YDGLDNK ++ IF  +AC F  E VN +   L  S     +G   
Sbjct:   220 RKGLDGKIQKALRVGYDGLDNKKDEAIFRHIACLFNFEKVNDIRLLLADSDLNFNIGLEN 279

Query:   127 LVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYNMSLPS 186
             LVDKSL V   +N + MH LLQE+GR+IV  +SN  G    L   EDI +VL        
Sbjct:   280 LVDKSL-VNVRSNIVEMHCLLQEMGREIVRAQSNEAGEREFLMDTEDICDVLD------D 332

Query:   187 NISAKKLVFLEMPNSSIE 204
             NI  KK++ + +    I+
Sbjct:   333 NIGTKKMLGISLDVDEID 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2155347 TTR1 "TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
 Identities = 69/170 (40%), Positives = 105/170 (61%)

Query:     1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEV- 59
             ++ L    AL+ FS  A   +  +    E+S K +KYA G PLAL + G  L  +++   
Sbjct:   293 VQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPE 352

Query:    60 WESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFY 119
              E A  KL+       ++ +K SYD L+++EKNIFLD+ACFFQGE+V+ VM+ L   GF+
Sbjct:   353 MEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFF 412

Query:   120 PKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLW 169
             P +G  VLV+KSL+  S N ++ MH+L+Q++GR I+++E+      S LW
Sbjct:   413 PHVGIDVLVEKSLVTISEN-RVRMHNLIQDVGRQIINRETRQTKRRSRLW 461

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009615 "response to virus" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
 Identities = 75/175 (42%), Positives = 100/175 (57%)

Query:     8 LALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKL 67
             LALE F R AFK+N P   + ELSS+    A  +PL L VLG  L    K  W   + +L
Sbjct:   355 LALEMFCRSAFKKNSPPDDFLELSSEVALRAGNLPLGLNVLGSNLRGINKGYWIDMLPRL 414

Query:    68 QRILHPSILEVLKISYDGLDN-KEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSV 126
             Q  L   I + L++SYDGL+N K++ IF  +AC F GE V+ +   L  S     +G   
Sbjct:   415 QG-LDGKIGKTLRVSYDGLNNRKDEAIFRHIACIFNGEKVSDIKLLLANSNLDVNIGLKN 473

Query:   127 LVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYN 181
             LVD+SLI +  N  + MH LLQELG++IV  +SN PG    L   +DI +VL +N
Sbjct:   474 LVDRSLICERFNT-LEMHSLLQELGKEIVRTQSNQPGEREFLVDLKDICDVLEHN 527

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
 Identities = 72/171 (42%), Positives = 105/171 (61%)

Query:     9 ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
             +LE FS HAF+ + P   + + S + + Y  G+PLA++VLG FL ER    WES +  L+
Sbjct:   352 SLELFSWHAFRTSEPPKEFLQHSEEVVTYCAGLPLAVEVLGAFLIERSIREWESTLKLLK 411

Query:    69 RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLV 128
             RI + +I   L+IS++ L  ++K++FLD+ACFF G D   V   L+    YP +  S+L+
Sbjct:   412 RIPNDNIQAKLQISFNALTIEQKDVFLDIACFFIGVDSYYVACILDGCNLYPDIVLSLLM 471

Query:   129 DKSLIVKSNNNKITMHDLLQELGRDIVSKESNNP-GNCSLLWHHEDIYEVL 178
             ++ LI  S NN I MHDLL+++GR IV + S    G  S LW H D+  VL
Sbjct:   472 ERCLITISGNN-IMMHDLLRDMGRQIVREISPKKCGERSRLWSHNDVVGVL 521

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 76/185 (41%), Positives = 110/185 (59%)

Query:     9 ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
             AL+ FS +AF  + P   +E L++  + YA+G PLALKVLG  L ER+   WE+ +++L+
Sbjct:   350 ALKLFSLNAFSNSFPLKEFEGLTNMVLDYAKGHPLALKVLGSDLCERDDLYWEAKLDRLK 409

Query:    69 RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLV 128
                H  I EVL+ SY+ L  ++KN+FLD+ACFF+ E+V+ V   LN+ G         LV
Sbjct:   410 SRSHGDIYEVLETSYEELTTEQKNVFLDIACFFRSENVDYVTSLLNSHGVDVSGVVKDLV 469

Query:   129 DKSLIVKSNNNKITMHDLLQELGRDIVSK-ES---------NNPGN-CSL---LWHHEDI 174
             DK LI  S+N +I MHD+LQ + ++I  K E+         +  GN C     LW  EDI
Sbjct:   470 DKCLITLSDN-RIEMHDMLQTMAKEISLKVETIGIRDCRWLSRHGNQCQWHIRLWDSEDI 528

Query:   175 YEVLT 179
              ++LT
Sbjct:   529 CDLLT 533

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 3.5e-29, Sum P(2) = 3.5e-29
 Identities = 66/172 (38%), Positives = 104/172 (60%)

Query:     9 ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
             AL+ F  +AF QN P  G++ L+ K +  A  +PL L+++G +     +E W+ ++ +L+
Sbjct:   402 ALQIFCMYAFGQNSPKDGFQNLAWKVINLAGNLPLGLRIMGSYFRGMSREEWKKSLPRLE 461

Query:    69 RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGR-SVL 127
               L   I  +LK SYD LD+++KN+FL +ACFF G+++ ++ + L A  F     R +VL
Sbjct:   462 SSLDADIQSILKFSYDALDDEDKNLFLHIACFFNGKEIKILEEHL-AKKFVEVRQRLNVL 520

Query:   128 VDKSLIVKSNNNKITMHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVL 178
              +KSLI  SN   I MH LL +LG +IV  +S + PG    L+  E+I +VL
Sbjct:   521 AEKSLISFSNWGTIEMHKLLAKLGGEIVRNQSIHEPGQRQFLFDGEEICDVL 572

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
 Identities = 69/175 (39%), Positives = 104/175 (59%)

Query:     9 ALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQ 68
             AL  F +HAFKQ+ P    + L+ +    A  +PLAL+VLG F+  + KE WE ++  L+
Sbjct:   349 ALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLK 408

Query:    69 RILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASG-FYPKLGRSVL 127
               L   + +VLK+ YDGL + EK++FL +AC F G+  N + + + A+   Y   G  VL
Sbjct:   409 SRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVL 468

Query:   128 VDKSLIVKSNNNKITMHDLLQELGRDIVSKES-NNPGNCSLLWHHEDIYEVLTYN 181
              DKSLI K  N +I MH LL++LG+++V K+S   PG    L + ++   VL+ N
Sbjct:   469 ADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNN 523

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021878001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (480 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-37
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-10

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  136 bits (343), Expect = 6e-37
 Identities = 77/175 (44%), Positives = 103/175 (58%), Gaps = 2/175 (1%)

Query: 8   LALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKL 67
           LALE F R AFK+N P  G+ EL+S+    A  +PL L VLG +L  R+KE W   + +L
Sbjct: 355 LALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414

Query: 68  QRILHPSILEVLKISYDGLDN-KEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSV 126
           +  L   I + L++SYDGL+N K+K IF  +AC F GE VN +   L  S     +G   
Sbjct: 415 RNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKN 474

Query: 127 LVDKSLIVKSNNNKITMHDLLQELGRDIVSKESNNPGNCSLLWHHEDIYEVLTYN 181
           LVDKSLI    +  + MH LLQE+G++IV  +SN PG    L   +DI +VL  N
Sbjct: 475 LVDKSLIHVREDI-VEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDN 528

syringae 6; Provisional. Length = 1153

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 1   MEALEYHLALERFSRHAFKQNHP-DVGYEELSSKAMKYAQGVPLALKVLGCFLYER-EKE 58
           +E+LE   + E FS   F++  P     EE++ + ++  +G+PLALKVLG  L  +   +
Sbjct: 153 VESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQ 212

Query: 59  VWESAINKLQRILHP-----SILEVLKISYDGLDNKEKNIFLDVACFFQGED--VNLVMK 111
            WE  + +L   L        +L +L +SYD L    K  FL +A F +  +     ++K
Sbjct: 213 EWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIK 272

Query: 112 FLNASGFYP 120
              A GF  
Sbjct: 273 LWIAEGFVI 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.85
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	98.58
PRK04841	903	transcriptional regulator MalT; Provisional	98.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.15
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.67
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.12
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.06
smart00370	26	LRR Leucine-rich repeats, outliers.	95.06
COG3903	414	Predicted ATPase [General function prediction only	94.55
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.51
KOG0617	264	consensus Ras suppressor protein (contains leucine	91.44
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	91.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	91.17
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.81
COG3899	849	Predicted ATPase [General function prediction only	89.2
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.54
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.33
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	82.44
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.14

>PLN03210 Resistant to P

Probab=100.00  E-value=7.8e-39  Score=309.51  Aligned_cols=214  Identities=42%  Similarity=0.673  Sum_probs=195.4

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCCchhHHHHHH
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLK   80 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~l~   80 (215)
                      |++|+++|||+||+++||+...+++++.+++++||++|+|+||||+++|+.|++++..+|+.++++++...+.+|..+|+
T Consensus       348 v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~  427 (1153)
T PLN03210        348 VCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLR  427 (1153)
T ss_pred             ecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHH
Confidence            56889999999999999988777778999999999999999999999999999999999999999999888889999999


Q ss_pred             HhhcCccH-HHHHHHHHHhhccCCCCHHHHHHHHHHcCCchhhhHHHHHhccCceeccCCeEEecHHHHHHHHHHHhhcc
Q 041805           81 ISYDGLDN-KEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDLLQELGRDIVSKES  159 (215)
Q Consensus        81 ~Sy~~L~~-~~k~~fl~~a~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~~~~~~mHdlvr~~a~~i~~~e~  159 (215)
                      +||++|++ ..|.||++||+||.+.+.+.+..++...|+.++..++.|+++||++.. +++++|||++|+||++++++++
T Consensus       428 ~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~  506 (1153)
T PLN03210        428 VSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS  506 (1153)
T ss_pred             HhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc
Confidence            99999987 699999999999999988888887777888888899999999999987 6789999999999999999998


Q ss_pred             CCCCCccccccccchhHhhhCCC---------------------------------------------------------
Q 041805          160 NNPGNCSLLWHHEDIYEVLTYNM---------------------------------------------------------  182 (215)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~l~~~~---------------------------------------------------------  182 (215)
                      .+|++++++|.++|+++++..+.                                                         
T Consensus       507 ~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~  586 (1153)
T PLN03210        507 NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY  586 (1153)
T ss_pred             CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhh
Confidence            88999999999988887764321                                                         


Q ss_pred             ----------------CCCCCCCCCCceEEEcCCCCccccccccccCCC
Q 041805          183 ----------------SLPSNISAKKLVFLEMPNSSIEQLWDGMKVCET  215 (215)
Q Consensus       183 ----------------~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l~~  215 (215)
                                      ++|+.|.+++|++|+|++|+|++||++++.|++
T Consensus       587 lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~  635 (1153)
T PLN03210        587 LPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTG  635 (1153)
T ss_pred             cCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCC
Confidence                            678888889999999999999999999987764

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=304.96  Aligned_cols=156  Identities=30%  Similarity=0.434  Sum_probs=140.0

Q ss_pred             CCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhcCCchhHHhhhcccCCC-CHHHHHHHHHHHhcC-------C
Q 041805            1 MEALEYHLALERFSRHAFKQN-HPDVGYEELSSKAMKYAQGVPLALKVLGCFLYER-EKEVWESAINKLQRI-------L   71 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k-~~~~w~~~l~~l~~~-------~   71 (215)
                      +.+|+++|||+||++.||+.. ...+.++++|++||++|+|||||++++|+.|+.| +..+|+.+.+.+...       .
T Consensus       314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~  393 (889)
T KOG4658|consen  314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM  393 (889)
T ss_pred             ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence            578999999999999998764 3445589999999999999999999999999997 678999999987664       1


Q ss_pred             chhHHHHHHHhhcCccHHHHHHHHHHhhccCCC--CHHHHHHHHHHcCCch------------hhhHHHHHhccCceecc
Q 041805           72 HPSILEVLKISYDGLDNKEKNIFLDVACFFQGE--DVNLVMKFLNASGFYP------------KLGRSVLVDKSLIVKSN  137 (215)
Q Consensus        72 ~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~w~~~g~~~------------~~~l~~L~~~~Ll~~~~  137 (215)
                      +..|..+|++|||.||++.|.||+|||+||+|+  +++.++.+|+|+||+.            ..|+.+|+++||+....
T Consensus       394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~  473 (889)
T KOG4658|consen  394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER  473 (889)
T ss_pred             hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence            467999999999999999999999999999998  8999999999999874            45799999999999875


Q ss_pred             C----CeEEecHHHHHHHHHHHh
Q 041805          138 N----NKITMHDLLQELGRDIVS  156 (215)
Q Consensus       138 ~----~~~~mHdlvr~~a~~i~~  156 (215)
                      .    ..|+|||+||+||.+++.
T Consensus       474 ~~~~~~~~kmHDvvRe~al~ias  496 (889)
T KOG4658|consen  474 DEGRKETVKMHDVVREMALWIAS  496 (889)
T ss_pred             cccceeEEEeeHHHHHHHHHHhc
Confidence            3    459999999999999999

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.85  E-value=1.7e-22  Score=168.52  Aligned_cols=121  Identities=28%  Similarity=0.518  Sum_probs=100.0

Q ss_pred             CCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhcCCchhHHhhhcccCCC-CHHHHHHHHHHHhcCC------c
Q 041805            1 MEALEYHLALERFSRHAFKQN-HPDVGYEELSSKAMKYAQGVPLALKVLGCFLYER-EKEVWESAINKLQRIL------H   72 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k-~~~~w~~~l~~l~~~~------~   72 (215)
                      |++|+++||++||++.++... ...+...+.+++|+++|+|+||||+++|+.|+.+ +..+|+.+++++....      .
T Consensus       154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~  233 (287)
T PF00931_consen  154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD  233 (287)
T ss_dssp             CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999997655 3445567789999999999999999999999654 5678999998865532      4


Q ss_pred             hhHHHHHHHhhcCccHHHHHHHHHHhhccCCC--CHHHHHHHHHHcCCchh
Q 041805           73 PSILEVLKISYDGLDNKEKNIFLDVACFFQGE--DVNLVMKFLNASGFYPK  121 (215)
Q Consensus        73 ~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~w~~~g~~~~  121 (215)
                      ..+..++.+||+.||++.|+||+|||+||.++  +.+.++.+|+++|++..
T Consensus       234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence            77999999999999999999999999999987  79999999999998864

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.58  E-value=2.7e-08  Score=48.64  Aligned_cols=20  Identities=55%  Similarity=1.036  Sum_probs=18.9

Q ss_pred             CceEEEcCCCCccccccccc
Q 041805          192 KLVFLEMPNSSIEQLWDGMK  211 (215)
Q Consensus       192 ~L~~L~L~~s~i~~L~~~~~  211 (215)
                      +|++|+|++|+|++||+|+|
T Consensus         1 ~LVeL~m~~S~lekLW~G~k   20 (20)
T PF07725_consen    1 NLVELNMPYSKLEKLWEGVK   20 (20)
T ss_pred             CcEEEECCCCChHHhcCccC
Confidence            68999999999999999986

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.22  E-value=1.5e-05  Score=76.45  Aligned_cols=147  Identities=14%  Similarity=0.181  Sum_probs=100.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCCchhHHHHHHHh
Q 041805            3 ALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKIS   82 (215)
Q Consensus         3 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~l~~S   82 (215)
                      +++.+|+.++|.... +..- +   .+...+|.+.|+|.|+++..++..+...+.. .......+...+...+...|.-.
T Consensus       185 ~f~~~e~~~ll~~~~-~~~~-~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  258 (903)
T PRK04841        185 AFDHQEAQQFFDQRL-SSPI-E---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEE  258 (903)
T ss_pred             CCCHHHHHHHHHhcc-CCCC-C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHH
Confidence            789999999998765 3221 2   2445789999999999999988776543210 11112222222234566655444


Q ss_pred             -hcCccHHHHHHHHHHhhccCCCCHHHHHHHHHHcCCchhhhHHHHHhccCcee-cc-C-CeEEecHHHHHHHHHHHhhc
Q 041805           83 -YDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVK-SN-N-NKITMHDLLQELGRDIVSKE  158 (215)
Q Consensus        83 -y~~L~~~~k~~fl~~a~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~-~~-~-~~~~mHdlvr~~a~~i~~~e  158 (215)
                       ++.||++.++.++..|+++ .++.+.+..+...  -.....++.|.+.+++.. .+ + ..|++|+++|++.+.....+
T Consensus       259 v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~  335 (903)
T PRK04841        259 VLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE  335 (903)
T ss_pred             HHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence             8899999999999999987 6666655544431  123678999999999764 22 2 36999999999998876433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.15  E-value=0.00021  Score=35.96  Aligned_cols=22  Identities=9%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             CceEEEcCCCCccccccccccC
Q 041805          192 KLVFLEMPNSSIEQLWDGMKVC  213 (215)
Q Consensus       192 ~L~~L~L~~s~i~~L~~~~~~l  213 (215)
                      +|++|||++|+|+.+|.++++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999998765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.67  E-value=0.0076  Score=51.44  Aligned_cols=132  Identities=14%  Similarity=0.075  Sum_probs=86.4

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCCc---hhHHH
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILH---PSILE   77 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~~---~~i~~   77 (215)
                      ++++++++..+++.+.+-....  .--.+....|++.|+|.|-.+..+...+     ..|..... -.....   .....
T Consensus       177 l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~~I~~~~v~~~l~  248 (328)
T PRK00080        177 LEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DGVITKEIADKALD  248 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CCCCCHHHHHHHHH
Confidence            4689999999999988732221  1224567899999999996554444322     12211110 000111   23445


Q ss_pred             HHHHhhcCccHHHHHHHH-HHhhccCCC-CHHHHHHHHHHcCCchhhhHH-HHHhccCceeccCCe
Q 041805           78 VLKISYDGLDNKEKNIFL-DVACFFQGE-DVNLVMKFLNASGFYPKLGRS-VLVDKSLIVKSNNNK  140 (215)
Q Consensus        78 ~l~~Sy~~L~~~~k~~fl-~~a~fp~~~-~~~~l~~~w~~~g~~~~~~l~-~L~~~~Ll~~~~~~~  140 (215)
                      .+...|..|++..+..+. ....|+.+. +.+.+...+.......+..++ .|++.+|++....|+
T Consensus       249 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr  314 (328)
T PRK00080        249 MLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR  314 (328)
T ss_pred             HhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence            567788999998888876 777787665 888887777665555666778 999999998665554

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.66  E-value=0.018  Score=48.35  Aligned_cols=132  Identities=18%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhc--CCc---hhH
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQR--ILH---PSI   75 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~--~~~---~~i   75 (215)
                      +++++++|..+++.+.+-....  .--.+....|++.|+|.|-.+..++..+       |..+ .....  ...   ...
T Consensus       156 l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~~~~it~~~v~~~  225 (305)
T TIGR00635       156 LEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRGQKIINRDIALKA  225 (305)
T ss_pred             eCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcCCCCcCHHHHHHH
Confidence            4689999999999988732221  1224566789999999997655444322       1111 00000  011   122


Q ss_pred             HHHHHHhhcCccHHHHHHHH-HHhhccCC-CCHHHHHHHHHHcCCchhhhHH-HHHhccCceeccCCeEE
Q 041805           76 LEVLKISYDGLDNKEKNIFL-DVACFFQG-EDVNLVMKFLNASGFYPKLGRS-VLVDKSLIVKSNNNKIT  142 (215)
Q Consensus        76 ~~~l~~Sy~~L~~~~k~~fl-~~a~fp~~-~~~~~l~~~w~~~g~~~~~~l~-~L~~~~Ll~~~~~~~~~  142 (215)
                      ...+..+|..+++..+..+. .++.+..+ .+.+.+...+.......+..++ .|++++|+.....|++.
T Consensus       226 l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~~  295 (305)
T TIGR00635       226 LEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRIA  295 (305)
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhhh
Confidence            23356678999998887776 55777654 4777777777766666677788 69999999866566543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.29  E-value=0.0023  Score=30.02  Aligned_cols=17  Identities=24%  Similarity=0.321  Sum_probs=11.8

Q ss_pred             CCceEEEcCCCCccccc
Q 041805          191 KKLVFLEMPNSSIEQLW  207 (215)
Q Consensus       191 ~~L~~L~L~~s~i~~L~  207 (215)
                      .+|++|+|++|+|+.||
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            37999999999999987

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.12  E-value=0.013  Score=34.70  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             CCCC-CCCCCCceEEEcCCCCccccc
Q 041805          183 SLPS-NISAKKLVFLEMPNSSIEQLW  207 (215)
Q Consensus       183 ~lP~-~~~~~~L~~L~L~~s~i~~L~  207 (215)
                      ++|. -.++++|++|+|++|+|+.++
T Consensus        15 ~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen   15 DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            6677 347889999999999888654

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.06  E-value=0.015  Score=30.15  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.7

Q ss_pred             CCCceEEEcCCCCcccccccc
Q 041805          190 AKKLVFLEMPNSSIEQLWDGM  210 (215)
Q Consensus       190 ~~~L~~L~L~~s~i~~L~~~~  210 (215)
                      +.+|++|+|++|+|+.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            468999999999999999875

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.06  E-value=0.015  Score=30.15  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.7

Q ss_pred             CCCceEEEcCCCCcccccccc
Q 041805          190 AKKLVFLEMPNSSIEQLWDGM  210 (215)
Q Consensus       190 ~~~L~~L~L~~s~i~~L~~~~  210 (215)
                      +.+|++|+|++|+|+.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            468999999999999999875

>COG3903 Predicted ATPase [General function prediction only]

Probab=94.55  E-value=0.086  Score=46.02  Aligned_cols=155  Identities=19%  Similarity=0.231  Sum_probs=103.3

Q ss_pred             CCCCH-HHHHHHHHHhhcCCC---CCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHH----HhcC---
Q 041805            2 EALEY-HLALERFSRHAFKQN---HPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINK----LQRI---   70 (215)
Q Consensus         2 ~~L~~-~ea~~Lf~~~af~~~---~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~----l~~~---   70 (215)
                      ++|+. +++.++|...+--..   ............|.++..|.|++|...+++.+.-...+-...++.    ++..   
T Consensus       139 ~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~  218 (414)
T COG3903         139 PSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARL  218 (414)
T ss_pred             CccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhccccc
Confidence            34443 378888887762111   112234567789999999999999999998887543333333222    2222   


Q ss_pred             ---CchhHHHHHHHhhcCccHHHHHHHHHHhhccCCCCHHHHHHHHHHcCCc-------hhhhHHHHHhccCceecc---
Q 041805           71 ---LHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFY-------PKLGRSVLVDKSLIVKSN---  137 (215)
Q Consensus        71 ---~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~~w~~~g~~-------~~~~l~~L~~~~Ll~~~~---  137 (215)
                         ..+.....+.+||.-|..-.+-.|..++.|...++.+  ...|.+.|-.       ....+..|++++++...+   
T Consensus       219 a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~  296 (414)
T COG3903         219 AVLRQQTLRASLDWSYALLTGWERALFGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLG  296 (414)
T ss_pred             chhHHHhccchhhhhhHhhhhHHHHHhcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhh
Confidence               2366889999999999999999999999999888555  2234443332       233467789999987654   


Q ss_pred             CCeEEecHHHHHHHHHHHhhc
Q 041805          138 NNKITMHDLLQELGRDIVSKE  158 (215)
Q Consensus       138 ~~~~~mHdlvr~~a~~i~~~e  158 (215)
                      .-+|+.-+-+|.|+.....+.
T Consensus       297 ~a~~Rl~eT~r~YalaeL~r~  317 (414)
T COG3903         297 RARYRLLETGRRYALAELHRS  317 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            223777777777777665443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.51  E-value=0.13  Score=26.87  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=16.6

Q ss_pred             CCceEEEcCCCCcccccc
Q 041805          191 KKLVFLEMPNSSIEQLWD  208 (215)
Q Consensus       191 ~~L~~L~L~~s~i~~L~~  208 (215)
                      .+|..|+.++|+++.||+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            578999999999999997

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=91.44  E-value=0.043  Score=42.81  Aligned_cols=32  Identities=31%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccccccccCC
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCE  214 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~  214 (215)
                      .+|.++ ++++|.+|++++++|++||..+..|.
T Consensus        47 ~vppnia~l~nlevln~~nnqie~lp~~issl~   79 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLP   79 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhhhcChhhhhch
Confidence            555555 56666666666666666665555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=91.22  E-value=0.2  Score=31.38  Aligned_cols=32  Identities=13%  Similarity=0.246  Sum_probs=24.0

Q ss_pred             CCCC-CC-CCCCceEEEcCCCCcccccccc-ccCC
Q 041805          183 SLPS-NI-SAKKLVFLEMPNSSIEQLWDGM-KVCE  214 (215)
Q Consensus       183 ~lP~-~~-~~~~L~~L~L~~s~i~~L~~~~-~~l~  214 (215)
                      .+|. .| .+++|++|+|++|+|+.++.+. +.|+
T Consensus        15 ~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~   49 (61)
T PF13855_consen   15 EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP   49 (61)
T ss_dssp             EECTTTTTTGTTESEEEETSSSESEEETTTTTTST
T ss_pred             ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC
Confidence            5665 45 6799999999999999998643 4443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=91.17  E-value=0.12  Score=30.51  Aligned_cols=25  Identities=24%  Similarity=0.248  Sum_probs=20.1

Q ss_pred             CCceEEEcCCCCccccccccccCCC
Q 041805          191 KKLVFLEMPNSSIEQLWDGMKVCET  215 (215)
Q Consensus       191 ~~L~~L~L~~s~i~~L~~~~~~l~~  215 (215)
                      ++|++|+|++|+|+.++..+++|++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~   25 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPN   25 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTT
T ss_pred             CcceEEEccCCCCcccCchHhCCCC
Confidence            5799999999999999987887764

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.81  E-value=0.26  Score=25.71  Aligned_cols=18  Identities=17%  Similarity=0.274  Sum_probs=15.2

Q ss_pred             CCCceEEEcCCCCccccc
Q 041805          190 AKKLVFLEMPNSSIEQLW  207 (215)
Q Consensus       190 ~~~L~~L~L~~s~i~~L~  207 (215)
                      +++|.+|+|++|+|+++-
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            468999999999997753

>COG3899 Predicted ATPase [General function prediction only]

Probab=89.20  E-value=2.4  Score=41.09  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCC-------CHHHHHHHHHHHhcCC-c
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYER-------EKEVWESAINKLQRIL-H   72 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k-------~~~~w~~~l~~l~~~~-~   72 (215)
                      |.||+..|...|..... +....  ...+....|+++..|.|+-+.-+-..+...       +...|..=...+...+ .
T Consensus       216 L~PL~~~d~~~lV~~~l-~~~~~--~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~  292 (849)
T COG3899         216 LAPLSRADTNQLVAATL-GCTKL--LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATT  292 (849)
T ss_pred             cCcCchhhHHHHHHHHh-CCccc--ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhh
Confidence            57999999999888876 54322  234567899999999999887666655442       2334433222322221 1


Q ss_pred             hhHHHHHHHhhcCccHHHHHHHHHHhhccCCCCHHHHHHHHHHcCCchhhhHHHHHhccCceecc----CC----eE---
Q 041805           73 PSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSN----NN----KI---  141 (215)
Q Consensus        73 ~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~----~~----~~---  141 (215)
                      .++.+.+..-.+.||...|+....-||+-..++.+.|..++...+......+-.....+++.+..    .+    ..   
T Consensus       293 ~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~  372 (849)
T COG3899         293 DAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYK  372 (849)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHH
Confidence            33666788899999999999999999999999999998888864444433333333344444321    11    12   


Q ss_pred             EecHHHHHHHHHH
Q 041805          142 TMHDLLQELGRDI  154 (215)
Q Consensus       142 ~mHdlvr~~a~~i  154 (215)
                      -.||.+++.|-..
T Consensus       373 F~H~~vqqaaY~~  385 (849)
T COG3899         373 FLHDRVQQAAYNL  385 (849)
T ss_pred             hhHHHHHHHHhcc
Confidence            3577777766543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.54  E-value=14  Score=35.61  Aligned_cols=143  Identities=12%  Similarity=0.110  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCC-CCHHHHHHHHHHHhcCCchhHHH-HHHH
Q 041805            4 LEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYE-REKEVWESAINKLQRILHPSILE-VLKI   81 (215)
Q Consensus         4 L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~-k~~~~w~~~l~~l~~~~~~~i~~-~l~~   81 (215)
                      ++.+|+-.+|...- +..    -...-.+.+.+..+|.+-|+..++=.+++ .+...--..++   .. .+.|.. ...-
T Consensus       194 f~~eE~~~fl~~~~-~l~----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~dYL~ee  264 (894)
T COG2909         194 FDTEEAAAFLNDRG-SLP----LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS---GA-ASHLSDYLVEE  264 (894)
T ss_pred             CChHHHHHHHHHcC-CCC----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc---ch-HHHHHHHHHHH
Confidence            57888988888754 111    11234567888899999999888877773 23222111111   10 111111 1223


Q ss_pred             hhcCccHHHHHHHHHHhhccCCCCHHHHHHHHHHcCCchhhhHHHHHhccCceec--c-CCeEEecHHHHHHHHHHHhhc
Q 041805           82 SYDGLDNKEKNIFLDVACFFQGEDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKS--N-NNKITMHDLLQELGRDIVSKE  158 (215)
Q Consensus        82 Sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~--~-~~~~~mHdlvr~~a~~i~~~e  158 (215)
                      -+|.||+++|..++-||+++.- . +.|..-... .-.....+++|.+++|+-..  + ++.|+.|.++.+|-+...+.+
T Consensus       265 Vld~Lp~~l~~FLl~~svl~~f-~-~eL~~~Ltg-~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~  341 (894)
T COG2909         265 VLDRLPPELRDFLLQTSVLSRF-N-DELCNALTG-EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE  341 (894)
T ss_pred             HHhcCCHHHHHHHHHHHhHHHh-h-HHHHHHHhc-CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence            4688999999999999998521 1 122221111 11234569999999998843  2 456999999999988776554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.33  E-value=0.57  Score=23.46  Aligned_cols=16  Identities=25%  Similarity=0.405  Sum_probs=11.0

Q ss_pred             CCCceEEEcCCCCccc
Q 041805          190 AKKLVFLEMPNSSIEQ  205 (215)
Q Consensus       190 ~~~L~~L~L~~s~i~~  205 (215)
                      +++|++|+|++|+|..
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            3689999999999853

...

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=82.44  E-value=7.2  Score=31.77  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHhhcCCC--CCCchHHHHHHHHHHHhcCCchhHHhhhccc
Q 041805            1 MEALEYHLALERFSRHAFKQN--HPDVGYEELSSKAMKYAQGVPLALKVLGCFL   52 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~--~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L   52 (215)
                      ++|++.+|..+++...+-...  ....--.+..+.|++.|+|.|..|..++..+
T Consensus       189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            478999999998887652211  1111224678899999999999998888765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.14  E-value=1.2  Score=23.40  Aligned_cols=14  Identities=21%  Similarity=0.342  Sum_probs=12.4

Q ss_pred             CCceEEEcCCCCcc
Q 041805          191 KKLVFLEMPNSSIE  204 (215)
Q Consensus       191 ~~L~~L~L~~s~i~  204 (215)
                      ++|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            57999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-18
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-14
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-05

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 82.0 bits (202), Expect = 2e-18
 Identities = 18/186 (9%), Positives = 57/186 (30%), Gaps = 30/186 (16%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           + +LE     +    +       +   E++ +K ++ + G P  L +       +  E  
Sbjct: 290 VTSLEIDECYDFLEAYGMPMPVGEK-EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM 348

Query: 61  ESAINKLQRIL-----------HPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLV 109
               NKL+              + S+   L+   + L +++++             V++ 
Sbjct: 349 AQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMP--PGVDIP 406

Query: 110 MKFLN---ASGFYPKLGRSV----------LVDKSLIVKSNNNKIT---MHDLLQELGRD 153
           +K  +              +          L  +  ++      +    +  ++    + 
Sbjct: 407 VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKH 466

Query: 154 IVSKES 159
           +V  ++
Sbjct: 467 VVDAQT 472

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 30/171 (17%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
             +L     LE  S         D    E +   +K  +G PL + ++G  L +     W
Sbjct: 283 ESSLGKEKGLEILSLFVN-MKKAD--LPEQAHSIIKECKGSPLVVSLIGALLRDFPNR-W 338

Query: 61  ESAINKLQRIL-----------HPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNLV 109
           E  + +LQ              + ++ E + IS + L    K+ + D++     +DV + 
Sbjct: 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSIL--QKDVKVP 396

Query: 110 MKFL----NASGFYPKLGRSV---LVDKSLIVKSNNNKIT---MHDLLQEL 150
            K L    +           +    V+KSL+    N K     +HDL  + 
Sbjct: 397 TKVLCILWDMETE---EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 24/167 (14%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
              L     LE  S      N         +   +K  +G PL + ++G  L +     W
Sbjct: 283 ESGLGREKGLEILSL---FVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRD-FPNRW 338

Query: 61  ESAINKLQR-----------ILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDVNL- 108
              + +LQ              + ++ E + IS + L    K+ + D++     +DV + 
Sbjct: 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSIL--QKDVKVP 396

Query: 109 ---VMKFLNASGFYPKLGRSVLVDKSLIVKSNNNK---ITMHDLLQE 149
              +    +      +      V+KSL+  + N K     +HDL  +
Sbjct: 397 TKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVD 443

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.86
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.82
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.95
2fna_A	357	Conserved hypothetical protein; structural genomic	97.84
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.84
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	94.3
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	88.23
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	87.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	87.14
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	87.04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	86.8
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	86.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	86.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	86.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	85.44
3e6j_A	229	Variable lymphocyte receptor diversity region; var	83.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	83.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	83.0
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	82.22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	81.93
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	81.08
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	80.55

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.95  E-value=1e-28  Score=222.26  Aligned_cols=155  Identities=11%  Similarity=0.078  Sum_probs=127.3

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHH-HhcCCchhHHHHH
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINK-LQRILHPSILEVL   79 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~-l~~~~~~~i~~~l   79 (215)
                      |++|+++|||+||.++||+... .+++.+++++|+++|+|+||||+++|+.|+.++ +.|...+.. ++.....++..+|
T Consensus       290 l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l  367 (549)
T 2a5y_B          290 VTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECIT  367 (549)
T ss_dssp             CCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHH
Confidence            6799999999999999987643 468889999999999999999999999998875 444444433 4443556789999


Q ss_pred             HHhhcCccHHHHHHHH-----------HHhhccCCCCHHHHHHHHHHc--CCch-----------hhhHHHHHhccCcee
Q 041805           80 KISYDGLDNKEKNIFL-----------DVACFFQGEDVNLVMKFLNAS--GFYP-----------KLGRSVLVDKSLIVK  135 (215)
Q Consensus        80 ~~Sy~~L~~~~k~~fl-----------~~a~fp~~~~~~~l~~~w~~~--g~~~-----------~~~l~~L~~~~Ll~~  135 (215)
                      .+||+.||++.|.||+           |||+||++++..  +.+|+++  |++.           ..+|++|+++||++.
T Consensus       368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~  445 (549)
T 2a5y_B          368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLS  445 (549)
T ss_dssp             SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSE
T ss_pred             hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence            9999999999999999           999999998555  8899999  7764           237999999999998


Q ss_pred             ccC---CeEEecHHHHHHHHHHHhhcc
Q 041805          136 SNN---NKITMHDLLQELGRDIVSKES  159 (215)
Q Consensus       136 ~~~---~~~~mHdlvr~~a~~i~~~e~  159 (215)
                      ...   ++|+|||+||+||+.++.+++
T Consensus       446 ~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          446 GKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             EECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             ecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            653   469999999999998887664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=1.2e-24  Score=209.68  Aligned_cols=152  Identities=18%  Similarity=0.225  Sum_probs=132.8

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCC-----------
Q 041805            3 ALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRIL-----------   71 (215)
Q Consensus         3 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~-----------   71 (215)
                      +|+++||++||...++..   .+++.+++++|+++|+|+||||+++|++|+.++ ..|+..++++....           
T Consensus       285 ~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~  360 (1249)
T 3sfz_A          285 GLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYD  360 (1249)
T ss_dssp             SCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTT
T ss_pred             CCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccc
Confidence            499999999999998433   234556789999999999999999999998866 47999998876532           


Q ss_pred             chhHHHHHHHhhcCccHHHHHHHHHHhhccCCC--CHHHHHHHHHHcCCchhhhHHHHHhccCceeccCCe---EEecHH
Q 041805           72 HPSILEVLKISYDGLDNKEKNIFLDVACFFQGE--DVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNK---ITMHDL  146 (215)
Q Consensus        72 ~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~~~~---~~mHdl  146 (215)
                      ...+..+|.+||+.||+++|+||+|||+||+++  +.+.++.+|.+++...+.++++|+++||++...+++   |+||++
T Consensus       361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l  440 (1249)
T 3sfz_A          361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL  440 (1249)
T ss_dssp             HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHH
Confidence            146999999999999999999999999999986  889999999988878889999999999999887665   999999


Q ss_pred             HHHHHHHHHhhc
Q 041805          147 LQELGRDIVSKE  158 (215)
Q Consensus       147 vr~~a~~i~~~e  158 (215)
                      ||+||++.+.++
T Consensus       441 ~~~~~~~~~~~~  452 (1249)
T 3sfz_A          441 QVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHTGGG
T ss_pred             HHHHHHhhhhHH
Confidence            999999987665

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.86  E-value=8.9e-22  Score=177.81  Aligned_cols=149  Identities=19%  Similarity=0.254  Sum_probs=126.0

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCC----------
Q 041805            2 EALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRIL----------   71 (215)
Q Consensus         2 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~----------   71 (215)
                      ++|+++||++||...++..   .....+.+.+|+++|+|+||||+.+|+.++.+. ..|+..++.+....          
T Consensus       284 ~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~  359 (591)
T 1z6t_A          284 SSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY  359 (591)
T ss_dssp             SSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred             CCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhcccc
Confidence            5899999999999998542   223346788999999999999999999998764 36888888876532          


Q ss_pred             -chhHHHHHHHhhcCccHHHHHHHHHHhhccCCC--CHHHHHHHHHHcCCchhhhHHHHHhccCceeccCC---eEEecH
Q 041805           72 -HPSILEVLKISYDGLDNKEKNIFLDVACFFQGE--DVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNN---KITMHD  145 (215)
Q Consensus        72 -~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~~~---~~~mHd  145 (215)
                       ...+..++..||+.||++.|.||++||+||+|+  +.+.++.+|.+++.....++++|+++||+....++   +|+||+
T Consensus       360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~  439 (591)
T 1z6t_A          360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHD  439 (591)
T ss_dssp             CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCH
T ss_pred             chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcH
Confidence             257999999999999999999999999999875  77889999987655667899999999999976533   599999


Q ss_pred             HHHHHHHHH
Q 041805          146 LLQELGRDI  154 (215)
Q Consensus       146 lvr~~a~~i  154 (215)
                      ++|++++..
T Consensus       440 lv~~~~~~~  448 (591)
T 1z6t_A          440 LQVDFLTEK  448 (591)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999887

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.82  E-value=5.7e-21  Score=179.57  Aligned_cols=133  Identities=14%  Similarity=0.128  Sum_probs=111.6

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCC--CHHHHHHHHHHHhcCCchhHHHHHH
Q 041805            3 ALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYER--EKEVWESAINKLQRILHPSILEVLK   80 (215)
Q Consensus         3 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k--~~~~w~~~l~~l~~~~~~~i~~~l~   80 (215)
                      +|+++|||+||++.. +..     ..++..+|   |+|+||||+++|+.|+++  +...|+..       ....+..+|.
T Consensus       297 ~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLe  360 (1221)
T 1vt4_I          297 TLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIE  360 (1221)
T ss_dssp             CCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHH
Confidence            799999999999984 433     12233333   999999999999999987  67888753       3578999999


Q ss_pred             HhhcCccHHH-HHHHHHHhhccCCC--CHHHHHHHHHHcCC-chhhhHHHHHhccCceecc-CCeEEecHHHHHHH
Q 041805           81 ISYDGLDNKE-KNIFLDVACFFQGE--DVNLVMKFLNASGF-YPKLGRSVLVDKSLIVKSN-NNKITMHDLLQELG  151 (215)
Q Consensus        81 ~Sy~~L~~~~-k~~fl~~a~fp~~~--~~~~l~~~w~~~g~-~~~~~l~~L~~~~Ll~~~~-~~~~~mHdlvr~~a  151 (215)
                      +||+.||++. |+||++||+||+++  +.+.++.+|+++|. .++.+|++|+++||++..+ .++|+|||++++++
T Consensus       361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence            9999999999 99999999999986  77889999999864 3577999999999999863 56799999998865

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.95  E-value=7.3e-05  Score=61.98  Aligned_cols=139  Identities=14%  Similarity=0.127  Sum_probs=86.2

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCC-CCHHHHHHHHHHHhcCCchhHHHHH
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYE-REKEVWESAINKLQRILHPSILEVL   79 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~-k~~~~w~~~l~~l~~~~~~~i~~~l   79 (215)
                      +.||+.+|+.+++.... +..... --.+.+..|++.|+|.|+++..++..+.. .+...+   ...+..    .+...+
T Consensus       200 l~pl~~~e~~~~l~~~~-~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~  270 (350)
T 2qen_A          200 VKPFDKDTSVEFLKRGF-REVNLD-VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLE----VAKGLI  270 (350)
T ss_dssp             CCCCCHHHHHHHHHHHH-HTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHH----HHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH-HHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHHH----HHHHHH
Confidence            57999999999998754 222111 11346788999999999999998875422 222222   111110    111111


Q ss_pred             HHhhcCc---cHHHHHHHHHHhhccCCCCHHHHHHHHHHc--CCch---hhhHHHHHhccCceeccCCeEEe-cHHHHHH
Q 041805           80 KISYDGL---DNKEKNIFLDVACFFQGEDVNLVMKFLNAS--GFYP---KLGRSVLVDKSLIVKSNNNKITM-HDLLQEL  150 (215)
Q Consensus        80 ~~Sy~~L---~~~~k~~fl~~a~fp~~~~~~~l~~~w~~~--g~~~---~~~l~~L~~~~Ll~~~~~~~~~m-Hdlvr~~  150 (215)
                      .-.+..+   ++..+..+..+|+  ...+...+.......  |...   ..+++.|.+.+||... +++|++ |.++|++
T Consensus       271 ~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~  347 (350)
T 2qen_A          271 MGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATV  347 (350)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHH
T ss_pred             HHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHH
Confidence            1122222   7889999999998  234666666655322  3332   5679999999999876 577876 5677765


Q ss_pred             H
Q 041805          151 G  151 (215)
Q Consensus       151 a  151 (215)
                      -
T Consensus       348 ~  348 (350)
T 2qen_A          348 L  348 (350)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.84  E-value=0.0001  Score=61.13  Aligned_cols=138  Identities=16%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCC-CCHHHHHH-HHHHHhcCCchhHHHH
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYE-REKEVWES-AINKLQRILHPSILEV   78 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~-k~~~~w~~-~l~~l~~~~~~~i~~~   78 (215)
                      ++||+.+|+.+++....-......+..    ..|++.|+|.|+++..++..+.. .+.+.|-. ..+..    ...+...
T Consensus       206 l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  277 (357)
T 2fna_A          206 LKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKE  277 (357)
T ss_dssp             ECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHH
Confidence            479999999999987541111112222    78999999999999999876532 23333321 11111    0112222


Q ss_pred             HH-Hhh--cCccHHHHHHHHHHhhccCCCCHHHHHHHHH-HcC--Cc---hhhhHHHHHhccCceeccCCeEEe-cHHHH
Q 041805           79 LK-ISY--DGLDNKEKNIFLDVACFFQGEDVNLVMKFLN-ASG--FY---PKLGRSVLVDKSLIVKSNNNKITM-HDLLQ  148 (215)
Q Consensus        79 l~-~Sy--~~L~~~~k~~fl~~a~fp~~~~~~~l~~~w~-~~g--~~---~~~~l~~L~~~~Ll~~~~~~~~~m-Hdlvr  148 (215)
                      +. +.+  ..|++..+..+..+|+-  . +...+..... ..|  ..   ...+++.|++.++|... ++.|++ |.+++
T Consensus       278 l~~~~~~~~~l~~~~~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~  353 (357)
T 2fna_A          278 FENFLHGREIARKRYLNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLIS  353 (357)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHH
T ss_pred             HHHHhhccccccHHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHH
Confidence            22 222  16889999999999982  2 5566554432 234  22   25689999999999876 467885 67888


Q ss_pred             HH
Q 041805          149 EL  150 (215)
Q Consensus       149 ~~  150 (215)
                      ++
T Consensus       354 ~~  355 (357)
T 2fna_A          354 LA  355 (357)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.84  E-value=0.002  Score=54.54  Aligned_cols=137  Identities=11%  Similarity=0.018  Sum_probs=79.7

Q ss_pred             CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc------CCchhHHhhhccc------CCC---CHHHHHH
Q 041805            1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ------GVPLALKVLGCFL------YER---EKEVWES   62 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~------GlPLal~~ig~~L------~~k---~~~~w~~   62 (215)
                      ++||+.++++++|...+   |......   .+....|++.|+      |.|..+..+....      .+.   +...+..
T Consensus       212 l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~  288 (412)
T 1w5s_A          212 LPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK  288 (412)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence            57999999999997654   3322222   356678888899      9997555443221      111   2344444


Q ss_pred             HHHHHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccC----CCCHHHHHHHH-----HHcCCc------hhhhHHHH
Q 041805           63 AINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQ----GEDVNLVMKFL-----NASGFY------PKLGRSVL  127 (215)
Q Consensus        63 ~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~----~~~~~~l~~~w-----~~~g~~------~~~~l~~L  127 (215)
                      ++.....      ...+.-+++.||++.+.++..+|.++.    .++...+...+     ...|..      ...+++.|
T Consensus       289 ~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  362 (412)
T 1w5s_A          289 AVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHL  362 (412)
T ss_dssp             HHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            3332110      234556788999999999999997652    22455444333     222322      14679999


Q ss_pred             HhccCceecc-----CCeEEecHH
Q 041805          128 VDKSLIVKSN-----NNKITMHDL  146 (215)
Q Consensus       128 ~~~~Ll~~~~-----~~~~~mHdl  146 (215)
                      ++.+||....     .|+|++|++
T Consensus       363 ~~~gli~~~~~~~~~~g~~~~~~l  386 (412)
T 1w5s_A          363 TSLGLVDAKPSGRGMRGRTTLFRL  386 (412)
T ss_dssp             HHTTSEEEECC-------CCEEEE
T ss_pred             HhCCCEEeecccCCCCCceeEEEe
Confidence            9999998653     344555544

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.30  E-value=0.88  Score=37.67  Aligned_cols=126  Identities=16%  Similarity=-0.038  Sum_probs=76.5

Q ss_pred             CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CCch-hHHhhhccc----C--CCCHHHHHHHHHHH
Q 041805            1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ---GVPL-ALKVLGCFL----Y--EREKEVWESAINKL   67 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~---GlPL-al~~ig~~L----~--~k~~~~w~~~l~~l   67 (215)
                      ++|++.++..++|...+   |.....++   +....+++.|+   |-|. |+.++-...    .  .-+...+..+++..
T Consensus       194 l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~  270 (384)
T 2qby_B          194 FKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY  270 (384)
T ss_dssp             ECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence            47899999999999875   33222222   34566777777   8776 443322211    1  12577777777654


Q ss_pred             hcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccCCCCH-HHHHHHHHHcCCch------hhhHHHHHhccCceec
Q 041805           68 QRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDV-NLVMKFLNASGFYP------KLGRSVLVDKSLIVKS  136 (215)
Q Consensus        68 ~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~~~-~~l~~~w~~~g~~~------~~~l~~L~~~~Ll~~~  136 (215)
                      .       ...+..+++.|+++.+..+..++....+-+. +....+....|..+      ..+++.|...++++..
T Consensus       271 ~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~  339 (384)
T 2qby_B          271 E-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR  339 (384)
T ss_dssp             H-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             h-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            2       2456778899999888888877761110111 12233333334222      4578899999999864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.28  E-value=2.3  Score=34.82  Aligned_cols=126  Identities=11%  Similarity=0.035  Sum_probs=75.1

Q ss_pred             CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CCchhH-Hhhhccc-----CC---CCHHHHHHHHH
Q 041805            1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ---GVPLAL-KVLGCFL-----YE---REKEVWESAIN   65 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~---GlPLal-~~ig~~L-----~~---k~~~~w~~~l~   65 (215)
                      ++|++.++..++|...+   +......   .++...+++.++   |.|..+ .++....     .+   -+...++.++.
T Consensus       194 l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~  270 (386)
T 2qby_A          194 FPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE  270 (386)
T ss_dssp             ECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence            47899999999999865   2222222   345566777777   988743 3322221     11   14556666655


Q ss_pred             HHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccC-C--C-CHHHH----HHHHHHcCCch------hhhHHHHHhcc
Q 041805           66 KLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQ-G--E-DVNLV----MKFLNASGFYP------KLGRSVLVDKS  131 (215)
Q Consensus        66 ~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~-~--~-~~~~l----~~~w~~~g~~~------~~~l~~L~~~~  131 (215)
                      ...       ...+.-++..+|+..+..+..++.+.+ +  . +...+    ..+-...|..+      ..+++.|.+.+
T Consensus       271 ~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~g  343 (386)
T 2qby_A          271 EIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVG  343 (386)
T ss_dssp             HHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHT
T ss_pred             HHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Confidence            432       245667788899988888888886432 2  1 34333    22222233322      45799999999


Q ss_pred             Cceec
Q 041805          132 LIVKS  136 (215)
Q Consensus       132 Ll~~~  136 (215)
                      +++..
T Consensus       344 li~~~  348 (386)
T 2qby_A          344 ILTAK  348 (386)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=88.23  E-value=0.41  Score=35.51  Aligned_cols=31  Identities=13%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             CCCCC-C-CCCCceEEEcCCCCccccccc-cccC
Q 041805          183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG-MKVC  213 (215)
Q Consensus       183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~-~~~l  213 (215)
                      .+|.. | .+.+|++|+|++|+|+.++.+ ++.|
T Consensus        71 ~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  104 (174)
T 2r9u_A           71 AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL  104 (174)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccChhHhCCcchhhEEECCCCccceeCHHHhccc
Confidence            55554 3 567777777777777777765 4443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=87.97  E-value=1.6  Score=36.02  Aligned_cols=148  Identities=13%  Similarity=0.048  Sum_probs=83.4

Q ss_pred             CCCCCHHHHHHHHHHhhc---CCCCCCchHHHHHHHHHHHh---------cCCchhHHhhhc-ccC-----C---CCHHH
Q 041805            1 MEALEYHLALERFSRHAF---KQNHPDVGYEELSSKAMKYA---------QGVPLALKVLGC-FLY-----E---REKEV   59 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~iv~~c---------~GlPLal~~ig~-~L~-----~---k~~~~   59 (215)
                      ++|++.++..+++...+-   ......   .+....+++.+         +|.|..+..+.. ...     +   -+...
T Consensus       190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~  266 (389)
T 1fnn_A          190 FSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED  266 (389)
T ss_dssp             CCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred             eCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence            478999999999988752   122222   35667788888         687644433222 111     1   13334


Q ss_pred             HHHHHHHHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhcc---CC--CCHHHHHHHHHH----cCCch------hhhH
Q 041805           60 WESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF---QG--EDVNLVMKFLNA----SGFYP------KLGR  124 (215)
Q Consensus        60 w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp---~~--~~~~~l~~~w~~----~g~~~------~~~l  124 (215)
                      ...+.......       .+.-.+..|+++.+.++..++.+.   .+  .+...+...+..    .|..+      ..++
T Consensus       267 v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l  339 (389)
T 1fnn_A          267 VRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYL  339 (389)
T ss_dssp             HHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            44444332211       122335668888888888888665   33  355555544432    33221      3579


Q ss_pred             HHHHhccCceeccC-------CeEE-------ecHHHHHHHHHHHhhc
Q 041805          125 SVLVDKSLIVKSNN-------NKIT-------MHDLLQELGRDIVSKE  158 (215)
Q Consensus       125 ~~L~~~~Ll~~~~~-------~~~~-------mHdlvr~~a~~i~~~e  158 (215)
                      +.|.+.+++.....       |+++       .|++++.+...+..+|
T Consensus       340 ~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~  387 (389)
T 1fnn_A          340 NDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE  387 (389)
T ss_dssp             HHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence            99999999997543       3322       4566666666555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=87.14  E-value=0.26  Score=40.46  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=24.1

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccccccccCC
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCE  214 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~  214 (215)
                      .+|..+ .+.+|++|+|++|+|..+|.++..|+
T Consensus       118 ~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~  150 (328)
T 4fcg_A          118 ELPDTMQQFAGLETLTLARNPLRALPASIASLN  150 (328)
T ss_dssp             CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred             chhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence            677766 66788888888888888887776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=87.04  E-value=0.26  Score=45.30  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccccccccCC
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCE  214 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~  214 (215)
                      ++|..| .+.+|++|+|++|+|..+|.+++.|+
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~  316 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC  316 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred             ccChhhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            556655 55666666666666666666655554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=86.80  E-value=0.52  Score=34.68  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             CCCCC-C-CCCCceEEEcCCCCccccccc-cccC
Q 041805          183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG-MKVC  213 (215)
Q Consensus       183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~-~~~l  213 (215)
                      .+|.. | .+.+|++|+|++|+|+.++.+ ++.|
T Consensus        68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  101 (170)
T 3g39_A           68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL  101 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccChhhccCCCCCCEEECCCCccCEeCHHHhcCC
Confidence            55554 3 567788888888888777764 4433

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=86.71  E-value=12  Score=30.55  Aligned_cols=126  Identities=14%  Similarity=0.070  Sum_probs=76.7

Q ss_pred             CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CCch-hHHhhhcccC-----C---CCHHHHHHHHH
Q 041805            1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ---GVPL-ALKVLGCFLY-----E---REKEVWESAIN   65 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~---GlPL-al~~ig~~L~-----~---k~~~~w~~~l~   65 (215)
                      ++|++.++..+++...+   +......+   +....+++.++   |.|- ++.++.....     +   -+...++.++.
T Consensus       198 l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~  274 (387)
T 2v1u_A          198 FPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA  274 (387)
T ss_dssp             BCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence            47899999999999874   33222222   34556777777   9983 3333222211     1   25666776666


Q ss_pred             HHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccCCC---CHHHHHH----HHHHcCCch------hhhHHHHHhccC
Q 041805           66 KLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGE---DVNLVMK----FLNASGFYP------KLGRSVLVDKSL  132 (215)
Q Consensus        66 ~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~---~~~~l~~----~w~~~g~~~------~~~l~~L~~~~L  132 (215)
                      ...       ...+.-++..|+++.+..++.++....+.   ....+.+    +....|..+      ..+++.|...++
T Consensus       275 ~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gl  347 (387)
T 2v1u_A          275 EIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGI  347 (387)
T ss_dssp             HHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTS
T ss_pred             HHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            542       23466678899999888888787543332   3443333    222334322      457899999999


Q ss_pred             ceec
Q 041805          133 IVKS  136 (215)
Q Consensus       133 l~~~  136 (215)
                      ++..
T Consensus       348 i~~~  351 (387)
T 2v1u_A          348 VKSR  351 (387)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9974

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=86.58  E-value=0.37  Score=44.32  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=27.7

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccccccccCCC
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCET  215 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~~  215 (215)
                      .+|..| .+.+|++|+|++|+|+.+|.++..|.+
T Consensus       261 ~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          261 ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            788877 778999999999999999988877653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=86.25  E-value=0.31  Score=39.98  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=28.7

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccccccccCCC
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCET  215 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~~  215 (215)
                      .+|..+ .+++|++|+|++|+|..+|.+++.|++
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~  128 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG  128 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTT
T ss_pred             hcChhhhhCCCCCEEECCCCCccchhHHHhccCC
Confidence            788876 789999999999999999998877653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=85.44  E-value=0.75  Score=33.99  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=12.7

Q ss_pred             CCCCceEEEcCCCCccccccc
Q 041805          189 SAKKLVFLEMPNSSIEQLWDG  209 (215)
Q Consensus       189 ~~~~L~~L~L~~s~i~~L~~~  209 (215)
                      .+++|++|+|++|+|+.++.+
T Consensus        55 ~l~~L~~L~Ls~N~l~~i~~~   75 (174)
T 2r9u_A           55 HLVNLQQLYFNSNKLTAIPTG   75 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcCCCEEECCCCCCCccChh
Confidence            456666666666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=83.68  E-value=0.85  Score=35.18  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=12.3

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccc
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLW  207 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~  207 (215)
                      ++|..+ .+.+|++|+|++|+|..++
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             ccCcccccCCCCCEEECCCCcCCccC
Confidence            444444 3455555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=83.20  E-value=0.98  Score=33.13  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=13.0

Q ss_pred             CCCCceEEEcCCCCccccccc
Q 041805          189 SAKKLVFLEMPNSSIEQLWDG  209 (215)
Q Consensus       189 ~~~~L~~L~L~~s~i~~L~~~  209 (215)
                      .+.+|++|+|++|+|+.++.+
T Consensus        52 ~l~~L~~L~Ls~N~l~~l~~~   72 (170)
T 3g39_A           52 RLTQLTRLDLDNNQLTVLPAG   72 (170)
T ss_dssp             TCTTCSEEECCSSCCCCCCTT
T ss_pred             CcccCCEEECCCCCcCccChh
Confidence            456666666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=83.00  E-value=0.55  Score=41.84  Aligned_cols=22  Identities=9%  Similarity=0.188  Sum_probs=9.3

Q ss_pred             CCCceEEEcCCCCccccccccc
Q 041805          190 AKKLVFLEMPNSSIEQLWDGMK  211 (215)
Q Consensus       190 ~~~L~~L~L~~s~i~~L~~~~~  211 (215)
                      +.+|++|+|++|+|+.+|.++.
T Consensus       462 l~~L~~L~Ls~N~l~~lp~~~~  483 (567)
T 1dce_A          462 LLLVTHLDLSHNRLRALPPALA  483 (567)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGG
T ss_pred             cccCcEeecCcccccccchhhh
Confidence            3444444444444444443333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=82.22  E-value=1.1  Score=34.34  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=13.6

Q ss_pred             CCCCC-C-CCCCceEEEcCCCCcccc
Q 041805          183 SLPSN-I-SAKKLVFLEMPNSSIEQL  206 (215)
Q Consensus       183 ~lP~~-~-~~~~L~~L~L~~s~i~~L  206 (215)
                      .+|.. | .+.+|++|+|++|+|..+
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEe
Confidence            44444 2 356666666666666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=81.93  E-value=1.3  Score=31.36  Aligned_cols=20  Identities=25%  Similarity=0.247  Sum_probs=12.2

Q ss_pred             CCCCceEEEcCCCCccc-ccc
Q 041805          189 SAKKLVFLEMPNSSIEQ-LWD  208 (215)
Q Consensus       189 ~~~~L~~L~L~~s~i~~-L~~  208 (215)
                      .+.+|++|+|++|+|.. +|.
T Consensus        62 ~l~~L~~L~Ls~n~i~~~~~~   82 (149)
T 2je0_A           62 KLNKLKKLELSDNRVSGGLEV   82 (149)
T ss_dssp             CCTTCCEEECCSSCCCSCTHH
T ss_pred             cCCCCCEEECCCCcccchHHH
Confidence            45666666666666665 443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=81.08  E-value=0.9  Score=34.13  Aligned_cols=26  Identities=12%  Similarity=0.204  Sum_probs=18.6

Q ss_pred             CCCC-CC-CCCCceEEEcCCCCcccccc
Q 041805          183 SLPS-NI-SAKKLVFLEMPNSSIEQLWD  208 (215)
Q Consensus       183 ~lP~-~~-~~~~L~~L~L~~s~i~~L~~  208 (215)
                      .+|. .| .+.+|++|+|++|+|+.++.
T Consensus        68 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   95 (193)
T 2wfh_A           68 TLSNQSFSNMTQLLTLILSYNRLRCIPP   95 (193)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             EeCHhHccCCCCCCEEECCCCccCEeCH
Confidence            4443 35 56888888888888888774

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=80.55  E-value=2.1  Score=32.18  Aligned_cols=48  Identities=10%  Similarity=-0.001  Sum_probs=35.3

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhc
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGC   50 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~   50 (215)
                      ++|++.+|..+++...+.......  -.+....|++.|+|.|..+..+..
T Consensus       182 l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~  229 (250)
T 1njg_A          182 LKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD  229 (250)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence            578999999999998874332211  135567899999999988876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-14

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 1   MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVW 60
           + +LE     +    +       +   E++ +K ++ + G P  L +       +  E  
Sbjct: 182 VTSLEIDECYDFLEAYGMPMPVGE-KEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM 240

Query: 61  ESAINKLQRILHPSILEVLKISYDGLDNKEKNIF 94
               NKL+      +  +   SY  L    +   
Sbjct: 241 AQLNNKLESRGLVGVECITPYSYKSLAMALQRCV 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.77
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	92.15
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	90.2
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	88.32
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	87.37
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	86.06
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	85.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	83.12
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	82.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	82.06
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	82.02

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=6.5e-20  Score=149.67  Aligned_cols=96  Identities=15%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCCchhHHHHHH
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLK   80 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~l~   80 (215)
                      |++|+.+|||+||++++|+.... +..++++++||++|+|+||||+++|+.|+.++.+.|.+..+++......++..++.
T Consensus       182 l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~  260 (277)
T d2a5yb3         182 VTSLEIDECYDFLEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITP  260 (277)
T ss_dssp             CCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSS
T ss_pred             CCCCCHHHHHHHHHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            57999999999999999866543 46688999999999999999999999999999999999999998877788999999


Q ss_pred             HhhcCccHHHHHHHHHH
Q 041805           81 ISYDGLDNKEKNIFLDV   97 (215)
Q Consensus        81 ~Sy~~L~~~~k~~fl~~   97 (215)
                      +||+.||+++|+||.++
T Consensus       261 ~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         261 YSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             SSSSSHHHHHHHHHHTS
T ss_pred             HHHhcccHHHHHHHHhC
Confidence            99999999999999763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.15  E-value=0.04  Score=37.23  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccccccccCC
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCE  214 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~  214 (215)
                      ++|+.| .+.+|++|+|++|+|+.++ +++.++
T Consensus        34 ~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~   65 (124)
T d1dcea3          34 ALPPALAALRCLEVLQASDNALENVD-GVANLP   65 (124)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred             cchhhhhhhhcccccccccccccccC-cccccc
Confidence            777666 5678888888888888775 355443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.20  E-value=0.071  Score=35.89  Aligned_cols=25  Identities=16%  Similarity=0.091  Sum_probs=18.2

Q ss_pred             CCCCCCCCCCceEEEcCCCCccccc
Q 041805          183 SLPSNISAKKLVFLEMPNSSIEQLW  207 (215)
Q Consensus       183 ~lP~~~~~~~L~~L~L~~s~i~~L~  207 (215)
                      ++|.-..+.+|++|++++|+|..++
T Consensus        57 ~l~~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3          57 NVDGVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             CCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred             ccCccccccccCeEECCCCccCCCC
Confidence            6665446778888888888887766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.17  Score=38.27  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=26.2

Q ss_pred             CCCCC-C-CCCCceEEEcCCCCccccccccccCC
Q 041805          183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDGMKVCE  214 (215)
Q Consensus       183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~~~~l~  214 (215)
                      .+|.. | .+.+|++|+|++|+|+.+|+++..++
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~  195 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH  195 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCccccccccccceeecccCCCcccChhHCCCC
Confidence            56554 5 57999999999999999999887654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=87.37  E-value=0.16  Score=39.08  Aligned_cols=30  Identities=23%  Similarity=0.149  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCceEEEcCCCCccccccccccCC
Q 041805          183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVCE  214 (215)
Q Consensus       183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l~  214 (215)
                      +||+.  +.+|++|+|++|+|+.+|...++|+
T Consensus        52 ~lp~~--~~~L~~L~Ls~N~l~~lp~~~~~L~   81 (353)
T d1jl5a_          52 SLPEL--PPHLESLVASCNSLTELPELPQSLK   81 (353)
T ss_dssp             CCCSC--CTTCSEEECCSSCCSSCCCCCTTCC
T ss_pred             CCCCC--CCCCCEEECCCCCCcccccchhhhh
Confidence            66653  3577777888777777777766664

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=86.06  E-value=0.25  Score=36.71  Aligned_cols=49  Identities=14%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccC
Q 041805            1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLY   53 (215)
Q Consensus         1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~   53 (215)
                      |+|++.+|+.+++.+..-......++    ..+|.+.++|.|..+..+|..+.
T Consensus       205 L~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~  253 (283)
T d2fnaa2         205 LKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYL  253 (283)
T ss_dssp             ECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHH
Confidence            47899999999998765211122222    35889999999999998887654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.22  Score=34.95  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=16.3

Q ss_pred             CCCCCCCCCCceEEEcCCCCccccccc
Q 041805          183 SLPSNISAKKLVFLEMPNSSIEQLWDG  209 (215)
Q Consensus       183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~  209 (215)
                      ++|.-..+++|++|+|++|+|+.++.+
T Consensus        55 ~l~~~~~l~~L~~L~ls~N~i~~l~~~   81 (162)
T d1a9na_          55 KLDGFPLLRRLKTLLVNNNRICRIGEG   81 (162)
T ss_dssp             EECCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             ccCCcccCcchhhhhcccccccCCCcc
Confidence            444322556677777777777766654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.12  E-value=0.32  Score=37.08  Aligned_cols=26  Identities=15%  Similarity=0.322  Sum_probs=17.9

Q ss_pred             CCCCCC-CCCCceEEEcCCCCcccccc
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLWD  208 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~  208 (215)
                      ++|+.| .+++|++|+|++|+|+.++.
T Consensus       233 ~lp~~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         233 KVPGGLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             ccccccccccCCCEEECCCCccCccCh
Confidence            666665 56777777777777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.39  E-value=0.41  Score=36.44  Aligned_cols=33  Identities=12%  Similarity=0.208  Sum_probs=26.2

Q ss_pred             CCCCC-C-CCCCceEEEcCCCCccccccccccCCC
Q 041805          183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDGMKVCET  215 (215)
Q Consensus       183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~~~~l~~  215 (215)
                      ++|.. | .+.+|++|+|++|+|+.+|.++..|++
T Consensus       209 ~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~  243 (305)
T d1xkua_         209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY  243 (305)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             ccccccccccccceeeecccccccccccccccccC
Confidence            55444 3 578999999999999999988877753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.06  E-value=0.36  Score=33.51  Aligned_cols=28  Identities=14%  Similarity=0.121  Sum_probs=20.7

Q ss_pred             CCCCC-C-CCCCceEEEcCCCCcccccccc
Q 041805          183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDGM  210 (215)
Q Consensus       183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~~  210 (215)
                      ++|.. | .+++|++|+|++|+|+.++.++
T Consensus        70 ~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~   99 (156)
T d2ifga3          70 FVAPDAFHFTPRLSRLNLSFNALESLSWKT   99 (156)
T ss_dssp             EECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred             CcccccccccccccceeccCCCCcccChhh
Confidence            55444 5 5678888888888888888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=82.02  E-value=0.18  Score=38.87  Aligned_cols=25  Identities=16%  Similarity=0.392  Sum_probs=14.3

Q ss_pred             CCCCCC-CCCCceEEEcCCCCccccc
Q 041805          183 SLPSNI-SAKKLVFLEMPNSSIEQLW  207 (215)
Q Consensus       183 ~lP~~~-~~~~L~~L~L~~s~i~~L~  207 (215)
                      ++|+.| ++.+|++|+|++|+|..++
T Consensus        92 ~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          92 PIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             ccccccccccccchhhhccccccccc
Confidence            455555 5566666666666655543