Citrus Sinensis ID: 041814

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF
ccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccEEEEECcccccccccccEEEEEcccccccccEEEEEEEcccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEEEcHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccEEEccccEEEEcEEEEEEEEccccccccccHHHHHcccccccHHHHHHHHHHccccEEccccc
*DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVI******DSLFVTFLKVFLKSLQDLL********************ILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECR*****************RTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVE*AELALGAFGDGSSREAVLEMLKSRSYMLEMNSF
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MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
F-box protein At1g78100 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.probableQ9C9S2

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1FS1, chain A
Confidence level:confident
Coverage over the Query: 4-40
View the alignment between query and template
View the model in PyMOL