Citrus Sinensis ID: 041814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccEEEEEEcccccccccccEEEEEcccccccccEEEEEEEcccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEEEcHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccEEEccccEEEEcEEEEEEEEccccccccccHHHHHcccccccHHHHHHHHHHccccEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcEEEEcccccccccccEEEEEEEEcccccccEEEEEEEcccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHcccHcEEEEEcccccEEEEEcHHHHHHHHcccccccHHHcccccccHcccccccccEEEEEEEccEEEccccEEEEEEEEEEEEEccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdhfdqlpDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRvdrvispdsdsdsLFVTFLKVFLKSLQDLLTnttskpqtrpqqtqnspAEILSQFLRIKNLqielpggdlnldkgvTVKWRAEFGKSLTSCVIIGfksgstateedvdIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLlvdrdgegtvvmdkegmRECRLEAAQVSeeegwgrirtrtrtrtmvpsvrmrmrhVPRLMLAGGIWVEGATLVVVRAnaggkddvEDAELALgafgdgssREAVLEMLKSRSYMLEMNSF
Flexible Loop (DISEMBL)
mdhfdqlpDALILLIFSSVSDVKTLIRCRSvskrfnslvsqteslslrvdrVISPDSDSDSLFVTFLKVFLKSLQDLLTNttskpqtrpqqtqnsPAEILSQFLRIKNLQIElpggdlnlDKGVTVKWRAEFGKSLTSCVIIgfksgstateedVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRleaaqvseeegwgrirtrtrtrtmvpsvrmrmrhvPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELAlgafgdgssreAVLEMLKSRSYMLEMNSF
Low Complexity Region (SEG)
MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGrirtrtrtrtmvpsvrmrmrHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF
Disordered region (IsUnstruct)
******LPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVI******DSLFVTFLKVFLKSLQDLL********************ILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMD******CR**********GWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVE*AELALGA**************************
Disordered Region (DISOPRED)
*DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVI*******SLFVTFLKVFLKSLQD**********************ILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKS********VDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRE*******************RTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRAN***********LALGAFGDGSSREAVLEMLKSRSYMLEMNSF
Disordered Region (DISEMBL)
MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTT*************PAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF
Disordered Region (DISPRO)
***FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTTS*********QNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEA******************RTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9C9S2	334	F-box protein At1g78100 O	yes	no	0.981	0.928	0.488	5e-80
Q9LM18	314	F-box protein At1g22220 O	no	no	0.965	0.971	0.492	8e-78
Q9C534	379	F-box protein At1g30200 O	no	no	0.962	0.802	0.368	6e-45
O49508	380	F-box protein At4g18380 O	no	no	0.674	0.560	0.394	6e-42
Q9FNK5	395	F-box protein At5g46170 O	no	no	0.674	0.539	0.380	1e-40

>sp|Q9C9S2|FB91_ARATH F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1

 Score =  298 bits (762), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 166/340 (48%), Positives = 216/340 (63%), Gaps = 30/340 (8%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISP---DS 57
           MD FD +PD +++ I + V DVKTLIRCRSVSKRFNSL +Q+ESL L++D+++     DS
Sbjct: 1   MDAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGATESDS 60

Query: 58  DSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQ---QTQNSPAEILSQFLRIKNLQIELP 114
           + DS   +F +   KS+  LL    SKP    +   ++  +PA+ILS F RI+NL++EL 
Sbjct: 61  EIDSPIASFFRSLFKSIHGLLPPIFSKPANSDEILTRSPKTPAQILSGFERIRNLEVELY 120

Query: 115 GGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT--------------EEDVDIAGG 160
           GGD+ L+KG  VKW+AEFGK+L SCVI+ F+S +  T              E D +   G
Sbjct: 121 GGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSEFVCG 180

Query: 161 LKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEA 220
           LK RV+WTIS+L+AAS RH++++++V DH EME L++ D DGEGTVVMD  GM+E R   
Sbjct: 181 LKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYR--- 237

Query: 221 AQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDD 280
              +E  G  +   R   RT+VPSVRM MRH P LML  GI +E ATLVVVR      DD
Sbjct: 238 --ETEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDD 295

Query: 281 VEDAELALGAF-GDGSS---REAVLEMLKSRSYMLEMNSF 316
             D EL   AF GDG      EAV  +LK R  +LEMNSF
Sbjct: 296 -NDVELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM18|FB303_ARATH F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1

 Score =  290 bits (743), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 160/325 (49%), Positives = 217/325 (66%), Gaps = 20/325 (6%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
           MD FD LPD +I+ I + V DVKTL+RC S+SKRFNSLV Q+ESL+LR+D  +S     D
Sbjct: 1   MDVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVS-----D 55

Query: 61  SLFVT-FLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLN 119
           S  VT   +     L  LL+   +KP T    + + P +ILS+F RI+NL +ELPGGD+ 
Sbjct: 56  SPVVTSIFRSLFNGLVSLLSKP-AKPITITTLSPSLPFKILSRFDRIRNLDVELPGGDVK 114

Query: 120 LDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT-------EEDVDIAGGLKMRVMWTISSL 172
           L+KG  VKW+AEFGK+L SCVI+ F+S  T +       E D +   GLK RV+WTIS+L
Sbjct: 115 LEKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGESDAEFVTGLKTRVVWTISAL 174

Query: 173 IAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRI 232
           +AAS+RH++++E+V +H E+ESL++ D++ EGTVVM++EG++E R   A+V +EE     
Sbjct: 175 MAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEE----- 229

Query: 233 RTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAF- 291
           R     R++VPSVRM MRH P L L  GI +E ATLV+VR +    +  +DAELA  AF 
Sbjct: 230 RVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSGADFEVGDDAELATEAFV 289

Query: 292 GDGSSREAVLEMLKSRSYMLEMNSF 316
           GD    EAV+ +LK +   LEMNSF
Sbjct: 290 GDCMYGEAVVALLKCKKNALEMNSF 314

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C534|FB19_ARATH F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 136/369 (36%), Positives = 195/369 (52%), Gaps = 65/369 (17%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
            DHFD LPD+L+LLIF  V+DVK L RC  VS+RF+SLV   E++ +RVD VIS D  S 
Sbjct: 23  FDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSS 82

Query: 61  SLFVTFLKVFLKSLQDL---------LTNTTSKPQTRPQQ-------------------- 91
           S       +   S+ D          L      P  +P Q                    
Sbjct: 83  SDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPKRSSSSFDASFS 142

Query: 92  --------TQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIG 143
                   T +SP ++L  F  I+ L+IELP G+L ++ G+ +KWRA+FG +L +C+I+G
Sbjct: 143 AINDEIGVTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILG 202

Query: 144 ----FKSGSTATEED-VD-----------IAGGLKMRVMWTISSLIAASARHFMLKEIVG 187
                +S S    E+ VD             GGLK+RV+WTISSLIAASARH++L+ I+ 
Sbjct: 203 ASSVIQSNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIN 262

Query: 188 DHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRM 247
           +H  ++ L+L D DG+G + M++E + E R+     S              RT+VP++ M
Sbjct: 263 EHKSLDRLVLSDADGQGVLCMNREQLEELRVTPLSASS----------ASKRTLVPALNM 312

Query: 248 RMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSR 307
           R+ + P L L  G  ++GATLV +R +   K +V DA     AF +     A + ++K R
Sbjct: 313 RLWYAPELDLPDGTVLKGATLVAIRPSE-SKKEVCDASWLSDAFEEPFGTVAKM-LIKRR 370

Query: 308 SYMLEMNSF 316
           +Y LEMNSF
Sbjct: 371 TYCLEMNSF 379

Arabidopsis thaliana (taxid: 3702)

>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 140/246 (56%), Gaps = 33/246 (13%)

Query: 92  TQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT 151
           T +SP ++L  F  IK L+IELP G+L +D GV +KWRAEFG +L +CVI+G  S    T
Sbjct: 147 THHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSVIPPT 206

Query: 152 EEDVDIA---------------------GGLKMRVMWTISSLIAASARHFMLKEIVGDHH 190
             D   A                     GGLK+RV+WTISSLIAASARH++L+ I+ +H 
Sbjct: 207 NSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHK 266

Query: 191 EMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMR 250
            ++SL+L D DG+G + M+++ + E R++    S              RT+VP++ MR+ 
Sbjct: 267 TLDSLVLTDVDGQGVLCMNRDQLEELRVKPLSASS----------ASKRTLVPALNMRLW 316

Query: 251 HVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYM 310
           + P L L  G  ++GATLV +R +   K +V D      AF +     A + ++K R+Y 
Sbjct: 317 YAPSLELPDGTVLKGATLVAIRPSE-SKKEVCDVSWVSSAFDEPYGVAAKM-LVKRRTYC 374

Query: 311 LEMNSF 316
           LEMNSF
Sbjct: 375 LEMNSF 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 39/252 (15%)

Query: 92  TQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKS----- 146
           T +SP ++L  F  I+ L+IELP G+L +D GV +KWRAEFG +L +CVI+G  S     
Sbjct: 156 THHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVIPPN 215

Query: 147 -----------------GSTATE-----EDVDIAGGLKMRVMWTISSLIAASARHFMLKE 184
                            GS + +     E     GGLK+RV+WTISSLIAASARH++L+ 
Sbjct: 216 PMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQP 275

Query: 185 IVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPS 244
           I+ +H  ++SL+L D DG+G + M+++ + E R++    S              RT+VP+
Sbjct: 276 IIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASS----------ASKRTLVPA 325

Query: 245 VRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEML 304
           + MR+ + P L L  G  ++GATLV +R +   K +V D      AF +     A + ++
Sbjct: 326 LNMRLWYAPTLELPDGTVLKGATLVAIRPSE-SKKEVSDISWVSSAFEEPYETAAKM-LV 383

Query: 305 KSRSYMLEMNSF 316
           K R+Y LEMNSF
Sbjct: 384 KRRTYCLEMNSF 395

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
224084682	312	predicted protein [Populus trichocarpa]	0.949	0.961	0.641	2e-99
255545680	303	conserved hypothetical protein [Ricinus	0.958	1.0	0.588	6e-91
225459338	320	PREDICTED: F-box protein At1g78100-like	0.981	0.968	0.551	5e-85
18411823	334	F-box protein [Arabidopsis thaliana] gi|	0.981	0.928	0.488	3e-78
297839679	333	F-box family protein [Arabidopsis lyrata	0.977	0.927	0.476	2e-76
15219845	314	F-box protein [Arabidopsis thaliana] gi|	0.965	0.971	0.492	5e-76
297845238	317	hypothetical protein ARALYDRAFT_472458 [	0.968	0.965	0.486	2e-75
449532165	350	PREDICTED: F-box protein At1g78100-like	0.946	0.854	0.513	5e-72
449465894	349	PREDICTED: F-box protein At1g78100-like	0.946	0.856	0.513	5e-72
242090917	354	hypothetical protein SORBIDRAFT_09g02397	0.962	0.858	0.383	2e-61

>gi|224084682|ref|XP_002307387.1| predicted protein [Populus trichocarpa] gi|222856836|gb|EEE94383.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/324 (64%), Positives = 246/324 (75%), Gaps = 24/324 (7%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
           MD FD+LPD+LILLIF+S+SD+K LIRCRSVSKRFNSLV QTESLSL+VD VISP+SDSD
Sbjct: 5   MDGFDRLPDSLILLIFNSISDIKALIRCRSVSKRFNSLVPQTESLSLKVDCVISPESDSD 64

Query: 61  SLFVTFLKVFLKSLQDLLTNTTSKPQTRP---QQTQNSPAEILSQFLRIKNLQIELPGGD 117
           SLF T  K  LKS+ DL      KP  +P    QTQNSPA ILSQF RI++LQIELP GD
Sbjct: 65  SLF-TLFKSLLKSIHDLF-----KPDPKPTARNQTQNSPARILSQFDRIRDLQIELPAGD 118

Query: 118 LNLDKGVTVKWRAEFGKSLTSCVIIGFK-----SGSTATEEDVDIAGGLKMRVMWTISSL 172
           L L+KG  +KWRAEFGKSL SCVI+GF+      G++A EE +D  GGLK RV+W IS+L
Sbjct: 119 LKLEKGAVIKWRAEFGKSLKSCVILGFRRVANPEGNSADEE-IDFTGGLKTRVVWAISAL 177

Query: 173 IAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRI 232
           IAASARH++L ++V  H EME L+LVDR+GEGTV M+KEG+RECR EAA+  E E  G  
Sbjct: 178 IAASARHYLLNDVVKGHREMERLVLVDREGEGTVAMEKEGLRECR-EAARGGEWEEDG-- 234

Query: 233 RTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFG 292
                 RT+VPSVRMRMRH  R+ L  G+W+EG TLVVVR  +GG D  EDAELALGAFG
Sbjct: 235 -----GRTVVPSVRMRMRHEQRVQLKDGVWMEGVTLVVVRPCSGGGDG-EDAELALGAFG 288

Query: 293 DGSSREAVLEMLKSRSYMLEMNSF 316
            G   EAV  +LK++SY+LEMNSF
Sbjct: 289 GGIYGEAVQVLLKNKSYLLEMNSF 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545680|ref|XP_002513900.1| conserved hypothetical protein [Ricinus communis] gi|223546986|gb|EEF48483.1| conserved hypothetical protein [Ricinus communis]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 236/316 (74%), Gaps = 13/316 (4%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
           MD FD+LPD+LI+LIF+SVS +KTLIRCRSVSKRFNSLV QTESL L VDRVIS +SD++
Sbjct: 1   MDGFDRLPDSLIVLIFNSVSHIKTLIRCRSVSKRFNSLVPQTESLLLTVDRVISTESDTE 60

Query: 61  SLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNL 120
            L + FLK  LKS+ DL      KP      TQN+PA+ILS+F RI++L+IELP GDL L
Sbjct: 61  ILLLAFLKSLLKSIHDLFKPDEEKPIQNVNLTQNTPAQILSRFERIRDLEIELPAGDLKL 120

Query: 121 DKGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHF 180
           +KGV +KWRAE+GK+L SCVI+GF+   T   +D D    LK RV+WTIS+LIAASARH+
Sbjct: 121 EKGVVIKWRAEYGKTLKSCVIMGFR---TRNSDDFD----LKARVVWTISALIAASARHY 173

Query: 181 MLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRT 240
           +LK++V +H EME L+L D+D EGTVVM+K+ +RECR++ A   ++E   + R     RT
Sbjct: 174 LLKDVVREHEEMERLVLKDKDEEGTVVMEKDDLRECRIDMAARGKDEWEWQAR-----RT 228

Query: 241 MVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAV 300
           +VPSVRMR+RH  R+ L+ G W+EGATLVVVR       DVEDAELA+ AFG     EAV
Sbjct: 229 VVPSVRMRVRHETRVRLSDGTWLEGATLVVVRPCVADA-DVEDAELAMDAFGGEVYGEAV 287

Query: 301 LEMLKSRSYMLEMNSF 316
             +LK++SY+LEMNSF
Sbjct: 288 KLLLKTKSYVLEMNSF 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459338|ref|XP_002284195.1| PREDICTED: F-box protein At1g78100-like [Vitis vinifera]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 176/319 (55%), Positives = 228/319 (71%), Gaps = 9/319 (2%)

Query: 2   DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDS 61
           D FD+LPD LIL+IF+SV+D+KTLIRCR+VSKRFNSLV Q E+L L+VDRVIS DSD  S
Sbjct: 7   DSFDRLPDPLILVIFNSVADIKTLIRCRAVSKRFNSLVPQAETLVLKVDRVISTDSDG-S 65

Query: 62  LFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNLD 121
            F++FLK   +SL  +++  +   Q RP    NSP +IL  F RI+NL+IELPGGDL L+
Sbjct: 66  FFLSFLKSIFRSLHHIISPKSLPIQPRPH---NSPTQILRGFDRIRNLEIELPGGDLCLE 122

Query: 122 KGVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDV--DIAGGLKMRVMWTISSLIAASARH 179
           KG  +KW+AEFGK L SCVI+G++      E D   D+ GGLK+RV+WTIS+LIAASARH
Sbjct: 123 KGAVLKWKAEFGKRLKSCVIMGYRGLGEGEELDFGGDMDGGLKVRVVWTISALIAASARH 182

Query: 180 FMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTR 239
           ++L+E++ +H E+E L+L DRDGEGTVVMD+E +RECR    +  +EE       R ++R
Sbjct: 183 YLLRELIREHRELERLVLRDRDGEGTVVMDREALRECRDGEGEEEQEEEAVEPGERDKSR 242

Query: 240 TMVPSVRMRMRHVPRLMLAG-GIWVEGATLVVVRA-NAGGKDDVEDAELALGAFGDGSSR 297
           T VP+V+MRMRH P L L G G+ + GATLVVV     G K   E+A L   AF +G   
Sbjct: 243 TKVPAVQMRMRHEPLLELEGCGVRMGGATLVVVTPIKDGRKTGTEEAGLVCDAF-EGMFG 301

Query: 298 EAVLEMLKSRSYMLEMNSF 316
           EA   +LK+R+Y+LEMNSF
Sbjct: 302 EAARTLLKTRTYLLEMNSF 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411823|ref|NP_565169.1| F-box protein [Arabidopsis thaliana] gi|75262248|sp|Q9C9S2.1|FB91_ARATH RecName: Full=F-box protein At1g78100 gi|12324249|gb|AAG52096.1|AC012680_7 unknown protein; 22671-23675 [Arabidopsis thaliana] gi|15450976|gb|AAK96759.1| Unknown protein [Arabidopsis thaliana] gi|20148731|gb|AAM10256.1| unknown protein [Arabidopsis thaliana] gi|332197946|gb|AEE36067.1| F-box protein [Arabidopsis thaliana]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/340 (48%), Positives = 216/340 (63%), Gaps = 30/340 (8%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISP---DS 57
           MD FD +PD +++ I + V DVKTLIRCRSVSKRFNSL +Q+ESL L++D+++     DS
Sbjct: 1   MDAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGATESDS 60

Query: 58  DSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQ---QTQNSPAEILSQFLRIKNLQIELP 114
           + DS   +F +   KS+  LL    SKP    +   ++  +PA+ILS F RI+NL++EL 
Sbjct: 61  EIDSPIASFFRSLFKSIHGLLPPIFSKPANSDEILTRSPKTPAQILSGFERIRNLEVELY 120

Query: 115 GGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT--------------EEDVDIAGG 160
           GGD+ L+KG  VKW+AEFGK+L SCVI+ F+S +  T              E D +   G
Sbjct: 121 GGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSEFVCG 180

Query: 161 LKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEA 220
           LK RV+WTIS+L+AAS RH++++++V DH EME L++ D DGEGTVVMD  GM+E R   
Sbjct: 181 LKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYR--- 237

Query: 221 AQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDD 280
              +E  G  +   R   RT+VPSVRM MRH P LML  GI +E ATLVVVR      DD
Sbjct: 238 --ETEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDD 295

Query: 281 VEDAELALGAF-GDGSS---REAVLEMLKSRSYMLEMNSF 316
             D EL   AF GDG      EAV  +LK R  +LEMNSF
Sbjct: 296 -NDVELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839679|ref|XP_002887721.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297333562|gb|EFH63980.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/340 (47%), Positives = 217/340 (63%), Gaps = 31/340 (9%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISP---DS 57
           MD FD +PD +++ I + V DVKTLIRCRSVSKRFNSL +Q++SL L++D+++     DS
Sbjct: 1   MDAFDAIPDPVVIDILNKVGDVKTLIRCRSVSKRFNSLATQSDSLLLQLDQILGATESDS 60

Query: 58  DSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQ---QTQNSPAEILSQFLRIKNLQIELP 114
           + DS   +F +   KS+  LL  + SKP    +   ++  +PA+IL+ F RI+NL++EL 
Sbjct: 61  EIDSPIASFFRSLFKSIYGLLP-SFSKPAKTDEILTRSPKTPAQILAGFERIRNLEVELY 119

Query: 115 GGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT--------------EEDVDIAGG 160
           GGD+ L+KG  VKW+AEFGK+L SCVI+ F+S +  T              E D +   G
Sbjct: 120 GGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATESTAVVDGGVESDSEFVCG 179

Query: 161 LKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEA 220
           LK RV+WTIS+L+AAS RH++++++V DH +ME L++ DR+GEGTVVMD  GM+E R   
Sbjct: 180 LKTRVVWTISALMAASTRHYLMRDLVKDHKDMEKLIVRDREGEGTVVMDAAGMKEYR--- 236

Query: 221 AQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDD 280
              +E  G  +   R   RT+VPSVRM MRH P LML  GI +E ATLVVVR      DD
Sbjct: 237 --ETEARGDDKTLERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDD 294

Query: 281 VEDAELALGAF----GDGSSREAVLEMLKSRSYMLEMNSF 316
             D EL   AF    GD    EAV  +LK R  +LEMNSF
Sbjct: 295 -NDVELVTEAFAGDGGDCMYGEAVTALLKRRRNVLEMNSF 333

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219845|ref|NP_173641.1| F-box protein [Arabidopsis thaliana] gi|75264008|sp|Q9LM18.1|FB303_ARATH RecName: Full=F-box protein At1g22220 gi|9454528|gb|AAF87851.1|AC073942_5 Contains similarity to an unknown protein T11I11.4 gi|6587858 from Arabidopsis thaliana BAC T11I11 gb|AC012680. EST gb|AA395079 comes from this gene [Arabidopsis thaliana] gi|46931332|gb|AAT06470.1| At1g22220 [Arabidopsis thaliana] gi|51970616|dbj|BAD44000.1| unknown protein [Arabidopsis thaliana] gi|332192092|gb|AEE30213.1| F-box protein [Arabidopsis thaliana]

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/325 (49%), Positives = 217/325 (66%), Gaps = 20/325 (6%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
           MD FD LPD +I+ I + V DVKTL+RC S+SKRFNSLV Q+ESL+LR+D  +S     D
Sbjct: 1   MDVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVS-----D 55

Query: 61  SLFVT-FLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLN 119
           S  VT   +     L  LL+   +KP T    + + P +ILS+F RI+NL +ELPGGD+ 
Sbjct: 56  SPVVTSIFRSLFNGLVSLLSKP-AKPITITTLSPSLPFKILSRFDRIRNLDVELPGGDVK 114

Query: 120 LDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT-------EEDVDIAGGLKMRVMWTISSL 172
           L+KG  VKW+AEFGK+L SCVI+ F+S  T +       E D +   GLK RV+WTIS+L
Sbjct: 115 LEKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGESDAEFVTGLKTRVVWTISAL 174

Query: 173 IAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRI 232
           +AAS+RH++++E+V +H E+ESL++ D++ EGTVVM++EG++E R   A+V +EE     
Sbjct: 175 MAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEE----- 229

Query: 233 RTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAF- 291
           R     R++VPSVRM MRH P L L  GI +E ATLV+VR +    +  +DAELA  AF 
Sbjct: 230 RVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSGADFEVGDDAELATEAFV 289

Query: 292 GDGSSREAVLEMLKSRSYMLEMNSF 316
           GD    EAV+ +LK +   LEMNSF
Sbjct: 290 GDCMYGEAVVALLKCKKNALEMNSF 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845238|ref|XP_002890500.1| hypothetical protein ARALYDRAFT_472458 [Arabidopsis lyrata subsp. lyrata] gi|297336342|gb|EFH66759.1| hypothetical protein ARALYDRAFT_472458 [Arabidopsis lyrata subsp. lyrata]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 217/327 (66%), Gaps = 21/327 (6%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
           MD FD LPD +I+ I + V DVKTL+RC S+SKRF+SLV Q+ESL LR+D       DSD
Sbjct: 1   MDVFDGLPDPIIVDILNKVGDVKTLLRCTSLSKRFSSLVPQSESLILRLDH-----PDSD 55

Query: 61  SLFVTFLKVFLKSLQDL--LTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDL 118
           S F +  +   KS   L  L +  +KP      + + P++ILS F +I++L +EL GGD+
Sbjct: 56  SPFTSIFQSLFKSFHGLFSLFSKPAKPIPVTALSPSLPSKILSPFDKIRSLDVELHGGDV 115

Query: 119 NLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT-------EEDVDIAGGLKMRVMWTISS 171
            L+KG  VKW+AEFGK+L SCV++ F+S +T +       E D +   GLK RV+WTIS+
Sbjct: 116 KLEKGAAVKWKAEFGKTLKSCVVVAFRSAATVSSPVAVDGESDAEFVTGLKTRVVWTISA 175

Query: 172 LIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGR 231
           L+AAS+RH++++E+V +H EMESL++ D +GEGTVVMD EG++E R   A+V +EE    
Sbjct: 176 LMAASSRHYLMREVVKEHVEMESLIMRDVEGEGTVVMDAEGLKEFRNTEARVEDEE---- 231

Query: 232 IRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDV-EDAELALGA 290
            R    +R++VPSVRM MRH P L L  GI +E ATLV++R +    D V +DAELA  A
Sbjct: 232 -RVVKNSRSVVPSVRMSMRHAPSLKLKSGICLESATLVIIRPSGEYSDVVGDDAELATEA 290

Query: 291 F-GDGSSREAVLEMLKSRSYMLEMNSF 316
           F GD    EAV+ +LK +   LEMNSF
Sbjct: 291 FAGDCMYGEAVVALLKCKKNALEMNSF 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532165|ref|XP_004173053.1| PREDICTED: F-box protein At1g78100-like [Cucumis sativus]

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 173/337 (51%), Positives = 220/337 (65%), Gaps = 38/337 (11%)

Query: 2   DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVI----SPDS 57
           D F+ LPD+LILLIF+SVSDVKTLIRCR+VSKRFNSLV  ++SLSL+VD VI      DS
Sbjct: 30  DAFESLPDSLILLIFNSVSDVKTLIRCRAVSKRFNSLVPHSDSLSLKVDCVISSDSDSDS 89

Query: 58  DSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGD 117
             +S  ++F K  LKS  DLL+     P     ++QNSPA+IL QF RI++LQIE P  D
Sbjct: 90  HQNSFLLSFFKSVLKSFLDLLS-----PILLQSESQNSPAQILRQFRRIQHLQIEFPTTD 144

Query: 118 LNLDKGVTVKWRAEFGKSLTSCVIIGFKS-GSTATEE-----DVDIAGGLKMRVMWTISS 171
           L +++   VKWRAEFG +L SCVI+ F+     A EE     D+D  GGLK +V  TIS+
Sbjct: 145 LKVER--VVKWRAEFGDALKSCVILIFREIRKGAIEEDDVDSDLDFIGGLKSKVFMTIST 202

Query: 172 LIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRL----EAAQVSEEE 227
           +I ASARH +L E+V +H EMESL L DR GEG VVM+K+G+ E R     +  +V+E  
Sbjct: 203 VITASARHHVLGEVVEEHLEMESLALRDRGGEGVVVMEKKGLEELRRWRMGDGGEVAE-- 260

Query: 228 GWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKD------DV 281
            W       RTRT VPS  +RMRH  R+ +  G+W+E ATLVVV+ +  G+       D 
Sbjct: 261 -W------RRTRTRVPSTTVRMRHKGRVEVRRGMWMEDATLVVVKPSGNGRKSGDGEVDK 313

Query: 282 EDAELALGAF-GDGSSREAVLEML-KSRSYMLEMNSF 316
           EDAE+A+ AF GD   REAV  +L K + Y LEMNSF
Sbjct: 314 EDAEVAVRAFEGDDVYREAVEALLRKGKRYQLEMNSF 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465894|ref|XP_004150662.1| PREDICTED: F-box protein At1g78100-like [Cucumis sativus]

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 173/337 (51%), Positives = 220/337 (65%), Gaps = 38/337 (11%)

Query: 2   DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVI----SPDS 57
           D F+ LPD+LILLIF+SVSDVKTLIRCR+VSKRFNSLV  ++SLSL+VD VI      DS
Sbjct: 29  DAFESLPDSLILLIFNSVSDVKTLIRCRAVSKRFNSLVPHSDSLSLKVDCVISSDSDSDS 88

Query: 58  DSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGD 117
             +S  ++F K  LKS  DLL+     P     ++QNSPA+IL QF RI++LQIE P  D
Sbjct: 89  HQNSFLLSFFKSVLKSFLDLLS-----PILLQSESQNSPAQILRQFRRIQHLQIEFPTTD 143

Query: 118 LNLDKGVTVKWRAEFGKSLTSCVIIGFKS-GSTATEE-----DVDIAGGLKMRVMWTISS 171
           L +++   VKWRAEFG +L SCVI+ F+     A EE     D+D  GGLK +V  TIS+
Sbjct: 144 LKVER--VVKWRAEFGDALKSCVILIFREIRKGAIEEDDVDSDLDFIGGLKSKVFMTIST 201

Query: 172 LIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRL----EAAQVSEEE 227
           +I ASARH +L E+V +H EMESL L DR GEG VVM+K+G+ E R     +  +V+E  
Sbjct: 202 VITASARHHVLGEVVEEHLEMESLALRDRGGEGVVVMEKKGLEELRRWRMGDGGEVAE-- 259

Query: 228 GWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKD------DV 281
            W       RTRT VPS  +RMRH  R+ +  G+W+E ATLVVV+ +  G+       D 
Sbjct: 260 -W------RRTRTRVPSTTVRMRHKGRVEVRRGMWMEDATLVVVKPSGNGRKSGDGEVDK 312

Query: 282 EDAELALGAF-GDGSSREAVLEML-KSRSYMLEMNSF 316
           EDAE+A+ AF GD   REAV  +L K + Y LEMNSF
Sbjct: 313 EDAEVAVRAFEGDDVYREAVEALLRKGKRYQLEMNSF 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242090917|ref|XP_002441291.1| hypothetical protein SORBIDRAFT_09g023970 [Sorghum bicolor] gi|241946576|gb|EES19721.1| hypothetical protein SORBIDRAFT_09g023970 [Sorghum bicolor]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 201/352 (57%), Gaps = 48/352 (13%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
           +DHFD LPD+L+LLI + V DV++L RC +VSKR   LV     + +++DRV++ D D++
Sbjct: 15  VDHFDCLPDSLVLLILNKVEDVRSLGRCYAVSKRLCGLVPLVHDVYVKIDRVVAVDGDAE 74

Query: 61  -----------SLFVTFLKVFL----KSLQDLLT-NTTSKPQTRPQQTQNSPAEILSQFL 104
                      ++F  FLK+ L    K    +   N T +P   PQ +Q+SPA++L  F 
Sbjct: 75  DTLNLSSPKPRNIFSHFLKLMLLTIIKPFHSMRNPNGTGRP-LFPQLSQHSPAQVLRNFT 133

Query: 105 RIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFK---------------SGST 149
            ++NL+IELP GD+  ++GV +KWRAE+G +L +CVI+G                   + 
Sbjct: 134 HVRNLRIELPSGDVGTEEGVLLKWRAEYGSTLQNCVILGGTRVDRKPVGGEHEPSLEDNG 193

Query: 150 ATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMD 209
           +  E     GGLK+RV+WTISSLIAAS RH++L+ I+ DH  + SL+L D DG+GT+ M 
Sbjct: 194 SMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIINDHPTLRSLVLTDADGQGTLCMG 253

Query: 210 KEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLV 269
            E ++E R      S              RT VP+  M++++ P L L GG+ ++GATLV
Sbjct: 254 AEQLKEFRENQLSASA----------CSNRTQVPACNMKLKYAPYLELPGGMALQGATLV 303

Query: 270 VVR-----ANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF 316
            ++     +N G  +  E      GAF DG  + AV  ++K R+Y+LEMN F
Sbjct: 304 AIKPSPEGSNGGHPNRKEADGFVFGAF-DGPFKAAVKALMKRRTYLLEMNGF 354

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2015046	314	AUF2 "AT1G22220" [Arabidopsis	0.968	0.974	0.462	1.8e-64
TAIR|locus:2124524	380	AT4G18380 "AT4G18380" [Arabido	0.462	0.384	0.367	3.5e-53
TAIR|locus:2161383	395	AT5G46170 "AT5G46170" [Arabido	0.462	0.369	0.367	5.7e-52
TAIR|locus:2009822	379	AT1G30200 "AT1G30200" [Arabido	0.674	0.562	0.365	9.8e-48
TAIR|locus:2194719	334	AUF1 "AT1G78100" [Arabidopsis	0.955	0.904	0.398	6.2e-46

TAIR|locus:2015046 AUF2 "AT1G22220" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 150/324 (46%), Positives = 206/324 (63%)

Query:     1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
             MD FD LPD +I+ I + V DVKTL+RC S+SKRFNSLV Q+ESL+LR+D  +S   DS 
Sbjct:     1 MDVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVS---DSP 57

Query:    61 SLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLNL 120
              +   F  +F   L  LL+   +KP T    + + P +ILS+F RI+NL +ELPGGD+ L
Sbjct:    58 VVTSIFRSLF-NGLVSLLSKP-AKPITITTLSPSLPFKILSRFDRIRNLDVELPGGDVKL 115

Query:   121 DKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT-------EEDVDIAGGLKMRVMWTISSLI 173
             +KG  VKW+AEFGK+L SCVI+ F+S  T +       E D +   GLK RV+WTIS+L+
Sbjct:   116 EKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGESDAEFVTGLKTRVVWTISALM 175

Query:   174 AASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGXXX 233
             AAS+RH++++E+V +H E+ESL++ D++ EGTVVM++EG++E R   A+V +EE      
Sbjct:   176 AASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEE-----R 230

Query:   234 XXXXXXXXXXXXXXXXXHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAF-G 292
                              H P L L  GI +E ATLV+VR +    +  +DAELA  AF G
Sbjct:   231 VVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSGADFEVGDDAELATEAFVG 290

Query:   293 DGSSREAVLEMLKSRSYMLEMNSF 316
             D    EAV+ +LK +   LEMNSF
Sbjct:   291 DCMYGEAVVALLKCKKNALEMNSF 314

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2124524 AT4G18380 "AT4G18380" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
 Identities = 58/158 (36%), Positives = 87/158 (55%)

Query:   159 GGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRL 218
             GGLK+RV+WTISSLIAASARH++L+ I+ +H  ++SL+L D DG+G + M+++ + E R+
Sbjct:   235 GGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDVDGQGVLCMNRDQLEELRV 294

Query:   219 EAAQVSEEEGWGXXXXXXXXXXXXXXXXXXXXHVPRLMLAGGIWVEGATLVVVRANAGGK 278
             +    S                          + P L L  G  ++GATLV +R +   K
Sbjct:   295 KPLSASS----------ASKRTLVPALNMRLWYAPSLELPDGTVLKGATLVAIRPSES-K 343

Query:   279 DDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF 316
              +V D      AF +     A + ++K R+Y LEMNSF
Sbjct:   344 KEVCDVSWVSSAFDEPYGVAAKM-LVKRRTYCLEMNSF 380

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161383 AT5G46170 "AT5G46170" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
 Identities = 58/158 (36%), Positives = 87/158 (55%)

Query:   159 GGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRL 218
             GGLK+RV+WTISSLIAASARH++L+ I+ +H  ++SL+L D DG+G + M+++ + E R+
Sbjct:   250 GGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRV 309

Query:   219 EAAQVSEEEGWGXXXXXXXXXXXXXXXXXXXXHVPRLMLAGGIWVEGATLVVVRANAGGK 278
             +    S                          + P L L  G  ++GATLV +R +   K
Sbjct:   310 KPLAASS----------ASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRPSES-K 358

Query:   279 DDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNSF 316
              +V D      AF +     A + ++K R+Y LEMNSF
Sbjct:   359 KEVSDISWVSSAFEEPYETAAKM-LVKRRTYCLEMNSF 395

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010286 "heat acclimation" evidence=IEP

TAIR|locus:2009822 AT1G30200 "AT1G30200" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
 Identities = 88/241 (36%), Positives = 132/241 (54%)

Query:    92 TQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIG----FKSG 147
             T +SP ++L  F  I+ L+IELP G+L ++ G+ +KWRA+FG +L +C+I+G     +S 
Sbjct:   151 THHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGASSVIQSN 210

Query:   148 STATEED-VD-----------IAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESL 195
             S    E+ VD             GGLK+RV+WTISSLIAASARH++L+ I+ +H  ++ L
Sbjct:   211 SVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINEHKSLDRL 270

Query:   196 LLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGXXXXXXXXXXXXXXXXXXXXHVPRL 255
             +L D DG+G + M++E + E R+     S                          + P L
Sbjct:   271 VLSDADGQGVLCMNREQLEELRVTPLSASS----------ASKRTLVPALNMRLWYAPEL 320

Query:   256 MLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYMLEMNS 315
              L  G  ++GATLV +R +   K +V DA     AF +     A + ++K R+Y LEMNS
Sbjct:   321 DLPDGTVLKGATLVAIRPSES-KKEVCDASWLSDAFEEPFGTVAKM-LIKRRTYCLEMNS 378

Query:   316 F 316
             F
Sbjct:   379 F 379

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2194719 AUF1 "AT1G78100" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 134/336 (39%), Positives = 179/336 (53%)

Query:     1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
             +D  +++ D   L+   SVS      R  S++ +  SL+ Q + +    +     DS   
Sbjct:    13 IDILNRVGDVKTLIRCRSVSK-----RFNSLATQSESLLLQLDQILGATESDSEIDSPIA 67

Query:    61 SLFVTFLKVFLKSLQDLLTNTTSKPQ--TRPQQTQNSPAEILSQFLRIKNLQIELPGGDL 118
             S F +  K     L  + +   +  +  TR  +T   PA+ILS F RI+NL++EL GGD+
Sbjct:    68 SFFRSLFKSIHGLLPPIFSKPANSDEILTRSPKT---PAQILSGFERIRNLEVELYGGDV 124

Query:   119 NLDKGVTVKWRAEFGKSLTSCVIIGFKSG----STATE----------EDVDIAGGLKMR 164
              L+KG  VKW+AEFGK+L SCVI+ F+S     S ATE           D +   GLK R
Sbjct:   125 KLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSEFVCGLKTR 184

Query:   165 VMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVS 224
             V+WTIS+L+AAS RH++++++V DH EME L++ D DGEGTVVMD  GM+E R E    +
Sbjct:   185 VVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYR-E----T 239

Query:   225 EEEGWGXXXXXXXXXXXXXXXXXXXXHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDA 284
             E  G                      H P LML  GI +E ATLVVVR      DD  D 
Sbjct:   240 EVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDD-NDV 298

Query:   285 ELALGAF-GDGSS---REAVLEMLKSRSYMLEMNSF 316
             EL   AF GDG      EAV  +LK R  +LEMNSF
Sbjct:   299 ELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0010541 "acropetal auxin transport" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9S2	FB91_ARATH	No assigned EC number	0.4882	0.9810	0.9281	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000856 hypothetical protein (308 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam00646	48	pfam00646, F-box, F-box domain	2e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	4e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	5e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 2  DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRV 49
               LPD L+L I S + D K L+R   VSKR+ SLV   +    R+
Sbjct: 1  FSLLDLPDDLLLEILSRL-DPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 4  FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40
             LPD ++L IFS + D + L+R   V +R+  L S
Sbjct: 1  LSDLPDEILLQIFSYL-DPRDLLRLALVCRRWRELAS 36

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 36.6 bits (86), Expect = 5e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7  LPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40
          LPD ++  I S + D K L+R R VS+++ SL+ 
Sbjct: 1  LPDEILEEILSKL-DPKDLLRLRKVSRKWRSLID 33

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	97.85
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.27
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.14
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.03
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.32

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=97.85  E-value=6.1e-06  Score=56.86  Aligned_cols=35  Identities=34%  Similarity=0.654  Sum_probs=30.8

Q ss_pred             CCCCchHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814            4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV   39 (316)
Q Consensus         4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV   39 (316)
                      ...||+|++..||+-+ |+++|.+|+.|||+|+.++
T Consensus         1 i~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence            3689999999999988 9999999999999999987

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.27  E-value=0.00013  Score=47.29  Aligned_cols=34  Identities=41%  Similarity=0.675  Sum_probs=31.0

Q ss_pred             CchHHHHHHHhhccccchhhhhhhhhccccccccc
Q 041814            7 LPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQ   41 (316)
Q Consensus         7 LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~   41 (316)
                      ||++++..||+.+ |++.+.+|+.|||+|+.++..
T Consensus         1 lP~~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKL-PPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999888 679999999999999998754

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.14  E-value=8.5e-05  Score=50.56  Aligned_cols=37  Identities=41%  Similarity=0.598  Sum_probs=30.0

Q ss_pred             CCCCchHHHHHHHhhccccchhhhhhhhhccccccccc
Q 041814            4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQ   41 (316)
Q Consensus         4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~   41 (316)
                      |.+||++++..||+++. .+++.+|+.|||+|++++-.
T Consensus         3 ~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence            67899999999999985 66699999999999998743

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0046  Score=61.41  Aligned_cols=105  Identities=30%  Similarity=0.378  Sum_probs=66.8

Q ss_pred             cCCCCchHHHHHHHhhccccchhhhhhhhhcccccccccccceEEEEeeecCCCCC-ChhHHHHHHHHHHhhh----hhc
Q 041814            3 HFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSD-SDSLFVTFLKVFLKSL----QDL   77 (316)
Q Consensus         3 ~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~v~~v~vrvd~Vis~~~~-~~~~~~~~~k~i~Kpl----q~l   77 (316)
                      .||+||||+++.||+-+. -|+|.+-+.|+|||+.+... +++-.+.|-   ++.+ .|+.+..+++.=++-|    -++
T Consensus        97 ~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~d-e~lW~~lDl---~~r~i~p~~l~~l~~rgV~v~Rlar~~~  171 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASD-ESLWQTLDL---TGRNIHPDVLGRLLSRGVIVFRLARSFM  171 (419)
T ss_pred             CcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcccc-ccceeeecc---CCCccChhHHHHHHhCCeEEEEcchhhh
Confidence            489999999999999876 58899999999999999876 556677776   4444 4666666666511111    111


Q ss_pred             ccC--CCCC-C---------CCCCCCCCCChHHHhhcccccceeeEE
Q 041814           78 LTN--TTSK-P---------QTRPQQTQNSPAEILSQFLRIKNLQIE  112 (316)
Q Consensus        78 ~~~--~~~~-~---------~~~~~~s~hSP~eVLk~F~~ir~L~IE  112 (316)
                      ++|  ++-. +         ......+-.+---+|++-+.+++|.+|
T Consensus       172 ~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE  218 (419)
T KOG2120|consen  172 DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE  218 (419)
T ss_pred             cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccc
Confidence            222  1100 0         000111222333489999999999988

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.32  E-value=0.016  Score=57.33  Aligned_cols=38  Identities=26%  Similarity=0.410  Sum_probs=33.9

Q ss_pred             CcCCCCchHHHHHHHhhcc----ccchhhhhhhhhccccccc
Q 041814            2 DHFDQLPDALILLIFSSVS----DVKTLIRCRSVSKRFNSLV   39 (316)
Q Consensus         2 D~Fd~LPD~Lll~IfnKi~----D~KtL~RC~~VSKrf~sLV   39 (316)
                      ++|..|||++++.||.++=    |.++|++|+.|||.|.-.+
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~  146 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA  146 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence            5688999999999999875    8999999999999997554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	5e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 72/229 (31%)

Query: 6   QLPDALILLIFSSVSDVKTL----IRCRS-VSKRFNSLVSQTESLSLRVDRVISPD---- 56
              + L  L+  +V + K      + C+  ++ RF  +   T+ LS      IS D    
Sbjct: 242 PYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHSM 296

Query: 57  ----SDSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSP------AEILSQFL-R 105
                +  SL + +L       QDL            +    +P      AE +   L  
Sbjct: 297 TLTPDEVKSLLLKYLDC---RPQDL----------PREVLTTNPRRLSIIAESIRDGLAT 343

Query: 106 IKNLQIELPGGDLNLDK-------GVTVKWRAEFGKSLTSCVIIGFKSGSTATEEDVDIA 158
             N +       +N DK        + V   AE+ K      +  F            I 
Sbjct: 344 WDNWK------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--F-------PPSAHIP 388

Query: 159 GGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDG-EGTV 206
             L + ++W    +I +     +        +++    LV++   E T+
Sbjct: 389 TIL-LSLIW--FDVIKSDVMVVV--------NKLHKYSLVEKQPKESTI 426

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 58/341 (17%), Positives = 113/341 (33%), Gaps = 118/341 (34%)

Query: 1   MDHFD----QLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVI-SP 55
           MD F+    Q     IL +F           C+ V     S++S+ E     +D +I S 
Sbjct: 7   MD-FETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEE-----IDHIIMSK 58

Query: 56  DSDSDS--LFVTFL-------KVFLKSLQDLLTN---TTSKPQTRPQQTQNSPAEILSQF 103
           D+ S +  LF T L       + F++ +  L  N     S  +T  +Q        + Q 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 104 LRIKN------------------LQIELPGGDLNLD--KGVTVKWRAEFGKS-LTSCVII 142
            R+ N                  L+  L    L L   K V +      GK+ +   V  
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVALDVC- 171

Query: 143 GFKSGSTATEEDVDIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDG 202
                         +   +  ++ W ++               + + +  E++L      
Sbjct: 172 ----------LSYKVQCKMDFKIFW-LN---------------LKNCNSPETVL------ 199

Query: 203 EGTVVMDKEGMRE-C-RLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGG 260
                   E +++   +++    S  +    I+ R        S++  +R   RL+ +  
Sbjct: 200 --------EMLQKLLYQIDPNWTSRSDHSSNIKLRIH------SIQAELR---RLLKS-- 240

Query: 261 IWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVL 301
                  L+V+        +V++A+    AF + S +  +L
Sbjct: 241 -KPYENCLLVL-------LNVQNAKA-WNAF-NLSCK--IL 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 33/160 (20%), Positives = 49/160 (30%), Gaps = 47/160 (29%)

Query: 47  LRVDRVISPDSDSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEI------L 100
           L +    SP++             L+ LQ LL        +R   + N    I      L
Sbjct: 187 LNLKNCNSPETV------------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 101 SQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLT-SCVIIGFKSGSTATEEDVDIAG 159
            + L+ K  +  L    L L   V     A+   +   SC I+        T     +  
Sbjct: 235 RRLLKSKPYENCL----LVLL-NV---QNAKAWNAFNLSCKIL-------LTTRFKQVT- 278

Query: 160 GLKMRVMWTISSLIAASARHFMLKEIVG--DHHEMESLLL 197
                       L AA+  H  L          E++SLLL
Sbjct: 279 ----------DFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 16/144 (11%)

Query: 1   MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
           +++  +LP+ L+L + + +   + +  CR V  R+  LV       L+  +       S 
Sbjct: 48  VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSA 107

Query: 61  SLFVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKN-----LQIELPG 115
                  + F               + R    +N   E   +            ++E   
Sbjct: 108 DEERDHWQQFYF-----------LSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELP 156

Query: 116 GDLNLDKGVTVKWRAEFGKSLTSC 139
           GD  ++       +  F  S   C
Sbjct: 157 GDNGVEFTQDDSVKKYFASSFEWC 180

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 3  HFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESL 45
           +D LPD L+L IFS +  +  L++   V KR+  L +  ESL
Sbjct: 8  SWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRL-ASDESL 48

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 3  HFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSDSL 62
           +D LPD L+L IFS +     L++   V KR+  L +  ESL   +D          + 
Sbjct: 8  SWDSLPDELLLGIFSCLCL-PELLKVSGVCKRWYRL-ASDESLWQTLDLTGKNLHPDVTG 65

Query: 63 FVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQN 94
           +    V          +        P + Q+
Sbjct: 66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 5  DQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTE-SLSLRVDRVISPDS 57
             P+ ++  +FS +   K       V K +  +       + +     +SP +
Sbjct: 7  LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 3  HFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQT-ESLSLRVDRVISPDS 57
                D +I  + + ++D K       V +R+  + S+T E +++ +    +PD 
Sbjct: 12 SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDR 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.02
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.23
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.12
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.02
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.53
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	93.48

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.02  E-value=1.8e-06  Score=59.39  Aligned_cols=38  Identities=39%  Similarity=0.619  Sum_probs=33.7

Q ss_pred             CcCCCCchHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814            2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS   40 (316)
Q Consensus         2 D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp   40 (316)
                      +.|..||++++..||..+ |+++|.+|+.|||+|+.++.
T Consensus         7 ~~~~~LP~eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             --CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred             CCHHHCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999998 58999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.23  E-value=4.4e-05  Score=66.85  Aligned_cols=39  Identities=26%  Similarity=0.475  Sum_probs=36.2

Q ss_pred             CcCCCCchHHHHHHHhhccccchhhhhhhhhccccccccc
Q 041814            2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQ   41 (316)
Q Consensus         2 D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~   41 (316)
                      |.+..||+|+++.||+-+ |+++|.+|+.|||+|+.++-.
T Consensus        13 d~~~~lp~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred             CChHHCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence            778889999999999988 999999999999999998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.12  E-value=0.00014  Score=63.91  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=36.1

Q ss_pred             CCcCCCCchHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814            1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS   40 (316)
Q Consensus         1 ~D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp   40 (316)
                      +|.|+.||+++++.||.-+ |+++|.||+.|||+|+.++.
T Consensus        16 ~d~~~~lp~e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHT
T ss_pred             CChhHHCCHHHHHHHHHhC-CHHHHHHHHHHhHHHHhhcC
Confidence            4899999999999999988 79999999999999998874

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.02  E-value=0.00022  Score=66.34  Aligned_cols=37  Identities=30%  Similarity=0.642  Sum_probs=34.2

Q ss_pred             cCCCCchHHHHHHHhhccccchhh-hhhhhhcccccccc
Q 041814            3 HFDQLPDALILLIFSSVSDVKTLI-RCRSVSKRFNSLVS   40 (316)
Q Consensus         3 ~Fd~LPD~Lll~IfnKi~D~KtL~-RC~~VSKrf~sLVp   40 (316)
                      ....|||+|++.||..+ ++++|. ||+.|||+|+.|+.
T Consensus        50 ~~~~LP~ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           50 YLAELPEPLLLRVLAEL-PATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CTTSSCHHHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhc
Confidence            56789999999999998 789999 99999999999974

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.80  E-value=0.0003  Score=64.60  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             CcCCCCchHHHHHHHhhccccchhhhhhhhhcccccc
Q 041814            2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSL   38 (316)
Q Consensus         2 D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sL   38 (316)
                      |.|+.|||+++..||..+.+.+.+.+|+.|||||+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.67  E-value=0.00025  Score=62.51  Aligned_cols=38  Identities=29%  Similarity=0.388  Sum_probs=34.9

Q ss_pred             CcCCCCchH----HHHHHHhhccccchhhhhhhhhcccccccc
Q 041814            2 DHFDQLPDA----LILLIFSSVSDVKTLIRCRSVSKRFNSLVS   40 (316)
Q Consensus         2 D~Fd~LPD~----Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp   40 (316)
                      |.+..||++    +++.||.-+ |+++|.||+.|||+|+.++.
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~   50 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS   50 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence            788899999    999999887 79999999999999998874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.15  E-value=0.0015  Score=55.85  Aligned_cols=37  Identities=41%  Similarity=0.661  Sum_probs=33.3

Q ss_pred             cCCCCchHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814            3 HFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS   40 (316)
Q Consensus         3 ~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp   40 (316)
                      .|+.|||+++..||..+ +.+.+.+|+.|||||+.++.
T Consensus         8 ~~~~LP~eil~~If~~L-~~~d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             CSSSSCHHHHHHHHTTS-CHHHHHHTTSSCHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999988 55689999999999999983

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.53  E-value=0.0029  Score=58.25  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=32.4

Q ss_pred             CCchHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814            6 QLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV   39 (316)
Q Consensus         6 ~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV   39 (316)
                      .|||+++..||..+.+.+.+.+|+.|||||+.+.
T Consensus        15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            6999999999999999999999999999999884

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=93.48  E-value=0.013  Score=55.59  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             CCCCchHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814            4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV   39 (316)
Q Consensus         4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV   39 (316)
                      ||.||+++++.||+-+ ++|.|.||+.|||+|+.++
T Consensus         5 l~~LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la   39 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFL-SPHDLCQLGSTNHYWNETV   39 (312)
T ss_dssp             HHHSCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHH
T ss_pred             hHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Confidence            6889999999999877 5777999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-07
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	5e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (105), Expect = 2e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 4  FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40
          +D LPD L+L IFS +  +  L++   V KR+  L S
Sbjct: 1  WDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS 36

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 1  MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRV---DRVISPDS 57
           D    LP  + L IF+ +   + +I    VS+ +N ++ ++ SL  ++   +  +SP  
Sbjct: 3  RDLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKG 61

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 1  MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV 39
           D    LP  L L + S + + K L++     + +  L 
Sbjct: 16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILA 53

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 1  MDHFDQLP----DALILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40
           D    LP    D +   I S + D K+L     V K +  + S
Sbjct: 8  RDFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.14
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.1
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.5e-09  Score=68.36  Aligned_cols=36  Identities=42%  Similarity=0.682  Sum_probs=34.2

Q ss_pred             CCCCchHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814            4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS   40 (316)
Q Consensus         4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp   40 (316)
                      |+.|||+++..||..+ |+++|.||+.|||||+.++.
T Consensus         1 f~~LP~eil~~If~~L-~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence            8999999999999999 89999999999999999864

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=1.2e-07  Score=71.03  Aligned_cols=40  Identities=25%  Similarity=0.449  Sum_probs=36.9

Q ss_pred             CCcCCCCchHHHHHHHhhccccchhhhhhhhhccccccccc
Q 041814            1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQ   41 (316)
Q Consensus         1 ~D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~   41 (316)
                      .|.|..||+||++.||+-+ |+++|++|+.|||+|+.++..
T Consensus         3 ~D~~~~LP~Ell~~I~s~L-d~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTS-CHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHC
Confidence            3889999999999999998 999999999999999998753

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.8e-07  Score=67.41  Aligned_cols=37  Identities=24%  Similarity=0.450  Sum_probs=35.5

Q ss_pred             CcCCCCchHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814            2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV   39 (316)
Q Consensus         2 D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV   39 (316)
                      |.|..||+|++..||.-+ |+++|++|+.|||+|++++
T Consensus        17 D~i~~LP~Eil~~Ils~L-d~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             STTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998 9999999999999999975

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.3e-06  Score=63.21  Aligned_cols=38  Identities=32%  Similarity=0.430  Sum_probs=34.4

Q ss_pred             CcCCCCc----hHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814            2 DHFDQLP----DALILLIFSSVSDVKTLIRCRSVSKRFNSLVS   40 (316)
Q Consensus         2 D~Fd~LP----D~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp   40 (316)
                      |.+..||    |||++.||+-+ |+++|++|+.|||+|+.++.
T Consensus         9 D~i~~LP~~l~~EI~~~Ils~L-d~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1           9 DFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred             cHHHHCCCCChHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHc
Confidence            6667788    69999999999 99999999999999999874